Started by upstream project "Trigger" build number 109 originally caused by: Started by user devspace [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/e9d96de4efbb3e39a2ce24824e54985c7c2760a6ed46c5415ea0aa1fd1e18d41/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.52.0' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c (refs/remotes/origin/master) > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10 Commit message: "Merge pull request #434 from will-moore/figure" > git rev-list --no-walk 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git config --get submodule.figure.url # timeout=10 > git config -f .gitmodules --get submodule.figure.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 > git submodule update --init --recursive figure # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 89 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + tar -zxf - + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-26.2.1 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pyjwt-2.15.0-py3-none-any.whl.metadata (3.5 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-50.0.1-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.3 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (45 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB) Collecting certifi>=2023.5.7 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.10.0-py3-none-any.whl (455 kB) Using cached pyjwt-2.15.0-py3-none-any.whl (33 kB) Using cached cryptography-50.0.1-cp311-abi3-manylinux_2_34_x86_64.whl (4.7 MB) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.34.2-py3-none-any.whl (73 kB) Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB) Using cached idna-3.20-py3-none-any.whl (69 kB) Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-3.0-py3-none-any.whl (48 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 certifi-2026.7.22 cffi-2.1.1 charset_normalizer-3.5.1 cryptography-50.0.1 future-1.0.0 idna-3.20 pycparser-3.0 pyjwt-2.15.0 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-09-25 13:29:09,684 [ scc.config] DEBUG Found github.token 2026-09-25 13:29:09,686 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-09-25 13:29:09,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:29:10,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:29:10,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-09-25 13:29:10,831 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 14:09 2026-09-25 13:29:10,831 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:29:10,841 [ scc.git] DEBUG Check current status 2026-09-25 13:29:10,841 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:29:10,869 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure 2026-09-25 13:29:10,870 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:29:11,099 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-09-25 13:29:11,207 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-09-25 13:29:11,262 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-09-25 13:29:11,325 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-09-25 13:29:11,384 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-09-25 13:29:11,464 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-09-25 13:29:11,524 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-09-25 13:29:11,582 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-09-25 13:29:11,672 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46) 2026-09-25 13:29:11,726 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-09-25 13:29:11,780 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-09-25 13:29:11,841 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-09-25 13:29:11,886 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-09-25 13:29:11,948 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-09-25 13:29:12,000 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-09-25 13:29:12,061 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-09-25 13:29:12,103 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-09-25 13:29:12,145 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-09-25 13:29:12,205 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-09-25 13:29:12,246 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-09-25 13:29:12,291 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-09-25 13:29:12,335 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-09-25 13:29:12,360 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-09-25 13:29:12,372 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:29:12,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-09-25 13:29:13,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:29:13,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:29:14,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:29:14,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:29:14,757 [ scc.git] DEBUG Resetting... 2026-09-25 13:29:14,757 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-09-25 13:29:15,095 [ scc.git] DEBUG HEAD is now at 6c8647e Merge pull request #434 from will-moore/figure 2026-09-25 13:29:15,097 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-09-25 13:29:16,326 [ scc.git] DEBUG Check current status 2026-09-25 13:29:16,326 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:29:16,352 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure 2026-09-25 13:29:16,354 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:29:16,564 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-09-25 13:29:16,651 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-09-25 13:29:16,688 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-09-25 13:29:16,726 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-09-25 13:29:16,768 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-09-25 13:29:16,829 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-09-25 13:29:16,865 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-09-25 13:29:16,901 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-09-25 13:29:16,967 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46) 2026-09-25 13:29:17,005 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-09-25 13:29:17,052 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-09-25 13:29:17,094 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-09-25 13:29:17,128 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-09-25 13:29:17,165 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-09-25 13:29:17,205 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-09-25 13:29:17,242 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-09-25 13:29:17,277 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-09-25 13:29:17,316 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-09-25 13:29:17,357 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-09-25 13:29:17,397 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-09-25 13:29:17,437 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-09-25 13:29:17,486 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-09-25 13:29:17,510 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-09-25 13:29:17,511 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-09-25 13:29:17,511 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-09-25 13:29:17,511 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-09-25 13:29:17,511 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-09-25 13:29:17,511 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-09-25 13:29:17,511 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:29:17,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-09-25 13:29:18,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-09-25 13:29:18,432 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:29:18,432 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-09-25 13:29:18,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-09-25 13:29:18,943 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:29:18,943 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-09-25 13:29:19,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-09-25 13:29:19,456 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:29:19,456 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-09-25 13:29:19,456 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:29:19,456 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:29:19,456 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:29:19,469 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:29:19,487 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:29:19,487 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:29:19,510 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:29:19,557 [ scc.git] DEBUG Already up to date. 2026-09-25 13:29:19,557 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-09-25 13:29:20,084 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-09-25 13:29:20,085 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-09-25 13:29:20,131 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-09-25 13:29:20,611 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-09-25 13:29:20,612 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-09-25 13:29:20,646 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-09-25 13:29:21,118 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-09-25 13:29:21,118 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-09-25 13:29:21,154 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:29:21,154 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:29:21,154 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:29:21,167 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-09-25 13:29:21,196 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:29:21,207 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-09-25 13:29:21,923 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:29:21,989 [ scc.git] DEBUG scripts | 2 +- 2026-09-25 13:29:21,989 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:29:22,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:29:22,211 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-09-25 13:29:22,247 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:29:22,257 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-09-25 13:29:22,968 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:29:23,032 [ scc.git] DEBUG omero-figure | 2 +- 2026-09-25 13:29:23,032 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:29:23,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:29:23,230 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-09-25 13:29:23,265 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:29:23,275 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-09-25 13:29:24,004 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:29:24,068 [ scc.git] DEBUG omero-iviewer | 2 +- 2026-09-25 13:29:24,068 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:29:24,070 [urllib3.conn] DEBUG Resetting dropped connection: api.github.com 2026-09-25 13:29:24,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:29:24,321 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:29:25,347 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-09-25 13:29:26,418 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-09-25 13:29:26,720 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-09-25 13:29:26,721 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:29:26,721 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:29:26,732 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:29:29,253 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f723a9be4d0> has no local changes 2026-09-25 13:29:29,253 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:29:30,755 [ scc.git] DEBUG [detached HEAD efa6a10] merge master -Dorg -Snone 2026-09-25 13:29:30,757 [ scc.merge] INFO Repository: ome/omero-plugins 2026-09-25 13:29:30,757 [ scc.merge] INFO Already up to date. 2026-09-25 13:29:30,757 [ scc.merge] INFO 2026-09-25 13:29:30,757 [ scc.merge] INFO Merged PRs: 2026-09-25 13:29:30,757 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-09-25 13:29:30,757 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-09-25 13:29:30,757 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-09-25 13:29:30,757 [ scc.merge] INFO 2026-09-25 13:29:30,757 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-09-25 13:29:30,757 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'figure' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' From https://github.com/ome/figure e2251e2..db28d7f gh-pages -> origin/gh-pages 3935875..5ea7e20 master -> origin/master Submodule path 'figure': checked out '5ea7e201a13b2172288fdf0c0751e71e569979ab' Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8' Submodule path 'omero-cli-zarr': checked out 'd5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' Submodule path 'omero-figure': checked out '3195c3df4e7bf2507d9c942d5d8c9a8566498147' Submodule path 'omero-iviewer': checked out '6c554250ea1528ff339ac06c3fe1e0621fe48576' Submodule path 'omero-metadata': checked out '6a653e49e3589ccb463166506896639f6f0a5a2b' Submodule path 'omero-rois': checked out 'fc9ff96901ce7b92e3ba51327ba7ba64fff76959' Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368' Submodule path 'scripts': checked out '5b4d76862a7141257c9ff221ff7f009f7ec416c0' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2026-09-25 13:29:54,693 [ scc.config] DEBUG Found github.token 2026-09-25 13:29:54,695 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-09-25 13:29:54,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:29:55,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:29:55,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-09-25 13:29:55,861 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 14:09 2026-09-25 13:29:55,862 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:29:55,872 [ scc.git] DEBUG Check current status 2026-09-25 13:29:55,872 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:29:55,896 [ scc.git] DEBUG efa6a10 merge master -Dorg -Snone 2026-09-25 13:29:55,897 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:29:56,121 [ scc.git] DEBUG +5ea7e201a13b2172288fdf0c0751e71e569979ab figure (remotes/origin/HEAD) 2026-09-25 13:29:56,203 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-09-25 13:29:56,237 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-09-25 13:29:56,273 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303) 2026-09-25 13:29:56,320 [ scc.git] DEBUG +d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 omero-cli-zarr (v0.9.0-1-gd5f88d8) 2026-09-25 13:29:56,387 [ scc.git] DEBUG +3195c3df4e7bf2507d9c942d5d8c9a8566498147 omero-figure (v8.0.1-1-g3195c3df) 2026-09-25 13:29:56,421 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-09-25 13:29:56,459 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-09-25 13:29:56,518 [ scc.git] DEBUG +6c554250ea1528ff339ac06c3fe1e0621fe48576 omero-iviewer (v0.19.0-1-g6c554250) 2026-09-25 13:29:56,558 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-09-25 13:29:56,601 [ scc.git] DEBUG +6a653e49e3589ccb463166506896639f6f0a5a2b omero-metadata (v0.14.0-2-g6a653e4) 2026-09-25 13:29:56,638 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-09-25 13:29:56,671 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-09-25 13:29:56,705 [ scc.git] DEBUG +fc9ff96901ce7b92e3ba51327ba7ba64fff76959 omero-rois (v0.4.1-1-gfc9ff96) 2026-09-25 13:29:56,742 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-09-25 13:29:56,795 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015) 2026-09-25 13:29:56,833 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-09-25 13:29:56,868 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2026-09-25 13:29:56,901 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685) 2026-09-25 13:29:56,937 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-09-25 13:29:56,969 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-09-25 13:29:57,003 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-09-25 13:29:57,025 [ scc.git] DEBUG +5b4d76862a7141257c9ff221ff7f009f7ec416c0 scripts (v5.10.0-1-g5b4d768) 2026-09-25 13:29:57,036 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:29:57,036 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2026-09-25 13:29:57,039 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2026-09-25 13:29:57,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-09-25 13:29:57,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:29:58,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:29:58,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:29:59,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:29:59,270 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:29:59,458 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-09-25 13:29:59,458 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:29:59,471 [ scc.git] DEBUG Check current status 2026-09-25 13:29:59,471 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:29:59,505 [ scc.git] DEBUG 5ea7e20 Merge pull request #17 from Rdornier/fix-panel-rotation-export 2026-09-25 13:29:59,506 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:29:59,624 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:29:59,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure HTTP/1.1" 200 None 2026-09-25 13:30:00,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:00,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:01,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:01,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:01,854 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:01,987 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:01,989 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-09-25 13:30:01,989 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:02,002 [ scc.git] DEBUG Check current status 2026-09-25 13:30:02,002 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:02,024 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2026-09-25 13:30:02,025 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:02,161 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:02,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2026-09-25 13:30:03,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:03,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:04,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:04,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:04,575 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:04,700 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:04,701 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-09-25 13:30:04,701 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:04,714 [ scc.git] DEBUG Check current status 2026-09-25 13:30:04,714 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:04,738 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2026-09-25 13:30:04,739 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:04,867 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:05,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2026-09-25 13:30:05,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:06,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:06,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:07,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:07,138 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:07,258 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:07,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-09-25 13:30:07,259 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:07,276 [ scc.git] DEBUG Check current status 2026-09-25 13:30:07,276 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:07,295 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease 2026-09-25 13:30:07,296 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:07,417 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:07,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2026-09-25 13:30:08,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:08,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:09,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:09,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:09,699 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:09,825 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:09,826 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-09-25 13:30:09,833 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:09,849 [ scc.git] DEBUG Check current status 2026-09-25 13:30:09,849 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:09,874 [ scc.git] DEBUG d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-09-25 13:30:09,875 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:10,011 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:10,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2026-09-25 13:30:10,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:11,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:11,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:12,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:12,282 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:12,448 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:12,449 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-09-25 13:30:12,449 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:12,466 [ scc.git] DEBUG Check current status 2026-09-25 13:30:12,466 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:12,504 [ scc.git] DEBUG 3195c3df Bump version: 8.0.1 → 8.0.2.dev0 2026-09-25 13:30:12,510 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:12,672 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:12,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2026-09-25 13:30:13,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:14,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:14,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:14,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:14,963 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:15,094 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:15,095 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-09-25 13:30:15,095 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:15,124 [ scc.git] DEBUG Check current status 2026-09-25 13:30:15,124 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:15,144 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2026-09-25 13:30:15,145 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:15,263 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:15,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2026-09-25 13:30:16,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:16,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:17,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:17,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:17,619 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:17,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:17,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-09-25 13:30:17,729 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:17,740 [ scc.git] DEBUG Check current status 2026-09-25 13:30:17,740 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:17,763 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2026-09-25 13:30:17,765 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:17,896 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:18,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2026-09-25 13:30:18,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:19,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:19,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:20,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:20,138 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:20,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:20,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-09-25 13:30:20,255 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:20,268 [ scc.git] DEBUG Check current status 2026-09-25 13:30:20,268 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:20,295 [ scc.git] DEBUG 6c554250 add dev 2026-09-25 13:30:20,297 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:20,427 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:20,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2026-09-25 13:30:21,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:21,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:22,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:22,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:22,644 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:22,771 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:22,772 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-09-25 13:30:22,772 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:22,788 [ scc.git] DEBUG Check current status 2026-09-25 13:30:22,788 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:22,809 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2026-09-25 13:30:22,810 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:22,946 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:23,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2026-09-25 13:30:23,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:24,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:24,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:25,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:25,354 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:25,475 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:25,476 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-09-25 13:30:25,476 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:25,490 [ scc.git] DEBUG Check current status 2026-09-25 13:30:25,490 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:25,522 [ scc.git] DEBUG 6a653e4 Fix workflow permission indentation 2026-09-25 13:30:25,523 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:25,649 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:25,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2026-09-25 13:30:26,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:26,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:27,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:27,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:27,883 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:28,020 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:28,020 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-09-25 13:30:28,020 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:28,033 [ scc.git] DEBUG Check current status 2026-09-25 13:30:28,033 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:28,052 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2026-09-25 13:30:28,053 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:28,191 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:28,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2026-09-25 13:30:29,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:29,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:30,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:30,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:30,537 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:30,696 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:30,696 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-09-25 13:30:30,697 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:30,721 [ scc.git] DEBUG Check current status 2026-09-25 13:30:30,721 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:30,757 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2026-09-25 13:30:30,759 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:30,931 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:31,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2026-09-25 13:30:31,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:32,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:32,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:33,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:33,125 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:33,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:33,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-09-25 13:30:33,254 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:33,267 [ scc.git] DEBUG Check current status 2026-09-25 13:30:33,267 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:33,286 [ scc.git] DEBUG fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0 2026-09-25 13:30:33,287 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:33,420 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:33,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2026-09-25 13:30:34,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:34,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:35,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:35,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:35,685 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:35,815 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:35,815 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-09-25 13:30:35,816 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:35,837 [ scc.git] DEBUG Check current status 2026-09-25 13:30:35,837 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:35,859 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build 2026-09-25 13:30:35,860 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:35,995 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:36,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2026-09-25 13:30:36,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:37,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:37,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:38,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:38,400 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:38,529 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:38,530 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-09-25 13:30:38,531 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:38,544 [ scc.git] DEBUG Check current status 2026-09-25 13:30:38,544 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:38,563 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme 2026-09-25 13:30:38,565 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:38,690 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:38,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-09-25 13:30:38,888 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-09-25 13:30:39,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2026-09-25 13:30:39,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:40,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:40,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:41,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:41,416 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:41,566 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:41,566 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-09-25 13:30:41,567 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:41,584 [ scc.git] DEBUG Check current status 2026-09-25 13:30:41,584 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:41,607 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2026-09-25 13:30:41,608 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:41,744 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:42,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2026-09-25 13:30:42,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:43,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:43,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:43,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:43,905 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:44,029 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:44,029 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-09-25 13:30:44,030 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:44,044 [ scc.git] DEBUG Check current status 2026-09-25 13:30:44,044 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:44,066 [ scc.git] DEBUG 160d894 Fix display of code 2026-09-25 13:30:44,067 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:44,193 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:44,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2026-09-25 13:30:44,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:45,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:45,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:46,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:46,397 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:46,515 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:46,515 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-09-25 13:30:46,516 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:46,531 [ scc.git] DEBUG Check current status 2026-09-25 13:30:46,531 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:46,558 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-09-25 13:30:46,559 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:46,691 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:46,691 [ scc.git] DEBUG Repository configuration: base-branch: main 2026-09-25 13:30:46,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2026-09-25 13:30:47,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:47,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:48,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:48,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:48,894 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:49,017 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:49,019 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-09-25 13:30:49,019 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:49,032 [ scc.git] DEBUG Check current status 2026-09-25 13:30:49,032 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:49,057 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2026-09-25 13:30:49,058 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:49,185 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:49,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-09-25 13:30:49,401 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-09-25 13:30:49,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2026-09-25 13:30:50,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:50,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:51,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:51,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:51,652 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:51,768 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:51,769 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-09-25 13:30:51,770 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:51,785 [ scc.git] DEBUG Check current status 2026-09-25 13:30:51,785 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:51,807 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2026-09-25 13:30:51,808 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:51,930 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:52,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-09-25 13:30:52,162 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-09-25 13:30:52,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2026-09-25 13:30:52,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:53,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:53,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:54,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:54,383 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:54,513 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:54,513 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-09-25 13:30:54,514 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:54,528 [ scc.git] DEBUG Check current status 2026-09-25 13:30:54,529 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:54,549 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2026-09-25 13:30:54,550 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:54,680 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:55,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2026-09-25 13:30:55,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:56,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:56,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:56,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:56,987 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:57,111 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:57,112 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-09-25 13:30:57,112 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-25 13:30:57,128 [ scc.git] DEBUG Check current status 2026-09-25 13:30:57,128 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:30:57,152 [ scc.git] DEBUG 5b4d768 Bump version: 5.10.0 → 5.10.1.dev0 2026-09-25 13:30:57,154 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:30:57,286 [ scc.config] DEBUG Found remote.origin.url 2026-09-25 13:30:57,287 [ scc.git] DEBUG Repository configuration: base-branch: develop 2026-09-25 13:30:57,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-09-25 13:30:57,491 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-09-25 13:30:57,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2026-09-25 13:30:58,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-25 13:30:58,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-25 13:30:59,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-25 13:30:59,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-25 13:30:59,660 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:30:59,800 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:30:59,800 [ scc.git] DEBUG Resetting... 2026-09-25 13:30:59,800 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-09-25 13:31:00,225 [ scc.git] DEBUG HEAD is now at efa6a10 merge master -Dorg -Snone 2026-09-25 13:31:00,227 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-09-25 13:31:00,765 [ scc.git] DEBUG Submodule path 'figure': checked out '393587512d75ac33d3e750a46847ab074bfb435f' 2026-09-25 13:31:01,140 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264' 2026-09-25 13:31:01,736 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2026-09-25 13:31:03,218 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-09-25 13:31:04,446 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-09-25 13:31:04,820 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2026-09-25 13:31:05,228 [ scc.git] DEBUG Submodule path 'omero-rois': checked out 'bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9' 2026-09-25 13:31:05,526 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73' 2026-09-25 13:31:05,856 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2026-09-25 13:31:06,131 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2026-09-25 13:31:06,664 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-09-25 13:31:06,686 [ scc.git] DEBUG Check current status 2026-09-25 13:31:06,686 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-25 13:31:06,706 [ scc.git] DEBUG efa6a10 merge master -Dorg -Snone 2026-09-25 13:31:06,707 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-25 13:31:06,929 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-09-25 13:31:07,037 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-09-25 13:31:07,085 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-09-25 13:31:07,125 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-09-25 13:31:07,169 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-09-25 13:31:07,236 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2026-09-25 13:31:07,270 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-09-25 13:31:07,305 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-09-25 13:31:07,386 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798cee) 2026-09-25 13:31:07,426 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-09-25 13:31:07,469 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-09-25 13:31:07,504 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-09-25 13:31:07,543 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-09-25 13:31:07,582 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-09-25 13:31:07,620 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-09-25 13:31:07,657 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-09-25 13:31:07,695 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-09-25 13:31:07,733 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-09-25 13:31:07,770 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-09-25 13:31:07,807 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-09-25 13:31:07,845 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-09-25 13:31:07,880 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-09-25 13:31:07,903 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2026-09-25 13:31:07,904 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-09-25 13:31:07,904 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-09-25 13:31:07,904 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-09-25 13:31:07,904 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-09-25 13:31:07,904 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-09-25 13:31:07,904 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-09-25 13:31:07,904 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:31:08,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-09-25 13:31:08,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-09-25 13:31:08,831 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:31:11,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:12,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:31:12,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:13,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:31:13,062 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-09-25 13:31:13,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-09-25 13:31:13,585 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:31:14,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:14,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:31:15,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:15,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:31:15,699 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-09-25 13:31:16,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-09-25 13:31:16,234 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:31:16,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:17,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:31:17,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:18,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:31:18,334 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-09-25 13:31:18,335 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:31:18,335 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:31:18,335 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:18,348 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:31:18,369 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:31:18,369 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:31:18,402 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:31:18,463 [ scc.git] DEBUG Already up to date. 2026-09-25 13:31:18,463 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-09-25 13:31:18,962 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-09-25 13:31:18,962 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-09-25 13:31:18,993 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-09-25 13:31:19,454 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-09-25 13:31:19,454 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-09-25 13:31:19,482 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-09-25 13:31:19,945 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-09-25 13:31:19,945 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-09-25 13:31:19,972 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:31:19,972 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:31:19,972 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:19,985 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-09-25 13:31:20,012 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:20,025 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-09-25 13:31:20,084 [ scc.git] DEBUG Already up to date. 2026-09-25 13:31:20,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:31:20,318 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-09-25 13:31:20,347 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:20,359 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-09-25 13:31:20,414 [ scc.git] DEBUG Already up to date. 2026-09-25 13:31:20,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:31:20,774 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-09-25 13:31:20,802 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:20,814 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-09-25 13:31:20,868 [ scc.git] DEBUG Already up to date. 2026-09-25 13:31:21,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:31:21,213 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:31:22,093 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:31:22,093 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:22,104 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:31:22,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls HTTP/1.1" 200 None 2026-09-25 13:31:23,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/19 HTTP/1.1" 200 None 2026-09-25 13:31:23,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/19/comments HTTP/1.1" 200 None 2026-09-25 13:31:23,634 [ scc.repo] DEBUG # ... Include label: include 2026-09-25 13:31:24,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/565be8a9abdb7501409d6523e77e60d463298045?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:24,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/565be8a9abdb7501409d6523e77e60d463298045/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:31:25,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/565be8a9abdb7501409d6523e77e60d463298045?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:25,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/565be8a9abdb7501409d6523e77e60d463298045?per_page=1 HTTP/1.1" 200 None 2026-09-25 13:31:26,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/565be8a9abdb7501409d6523e77e60d463298045?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:26,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/565be8a9abdb7501409d6523e77e60d463298045/status HTTP/1.1" 200 None 2026-09-25 13:31:26,632 [ scc.repo] DEBUG - PR 19 Rdornier 'Fix rectangle crop' 2026-09-25 13:31:27,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/14 HTTP/1.1" 200 None 2026-09-25 13:31:27,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/14/comments HTTP/1.1" 200 None 2026-09-25 13:31:28,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/6af169708b720a398fcc62321cdb84dd58ee7ef8?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:28,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/6af169708b720a398fcc62321cdb84dd58ee7ef8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:31:29,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/6af169708b720a398fcc62321cdb84dd58ee7ef8?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:29,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/6af169708b720a398fcc62321cdb84dd58ee7ef8?per_page=1 HTTP/1.1" 200 None 2026-09-25 13:31:30,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/6af169708b720a398fcc62321cdb84dd58ee7ef8?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:30,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/6af169708b720a398fcc62321cdb84dd58ee7ef8/status HTTP/1.1" 200 None 2026-09-25 13:31:30,681 [ scc.repo] DEBUG - PR 14 will-moore 'App served by omero env' 2026-09-25 13:31:31,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12 HTTP/1.1" 200 None 2026-09-25 13:31:31,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12/comments HTTP/1.1" 200 None 2026-09-25 13:31:32,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9 HTTP/1.1" 200 None 2026-09-25 13:31:32,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9/comments HTTP/1.1" 200 None 2026-09-25 13:31:33,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/5 HTTP/1.1" 200 None 2026-09-25 13:31:33,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/5/comments HTTP/1.1" 200 None 2026-09-25 13:31:34,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/ee5c65c3a69567451a595dea213b01b0e2e9b6ce?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:34,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/ee5c65c3a69567451a595dea213b01b0e2e9b6ce/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:31:35,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/ee5c65c3a69567451a595dea213b01b0e2e9b6ce?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:35,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/ee5c65c3a69567451a595dea213b01b0e2e9b6ce?per_page=1 HTTP/1.1" 200 None 2026-09-25 13:31:36,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/ee5c65c3a69567451a595dea213b01b0e2e9b6ce?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:36,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/ee5c65c3a69567451a595dea213b01b0e2e9b6ce/status HTTP/1.1" 200 None 2026-09-25 13:31:36,950 [ scc.repo] DEBUG - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' 2026-09-25 13:31:36,951 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:31:36,951 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-09-25 13:31:36,951 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:31:36,951 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:36,972 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:31:36,995 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:31:36,995 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:31:37,038 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:31:37,412 [ scc.git] DEBUG Updating 3935875..5ea7e20 2026-09-25 13:31:37,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/17 HTTP/1.1" 200 None 2026-09-25 13:31:38,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/15 HTTP/1.1" 200 None 2026-09-25 13:31:38,700 [ scc.git] DEBUG Calling 'git fetch origin pull/5/head' 2026-09-25 13:31:39,355 [ scc.git] DEBUG From https://github.com/ome/figure 2026-09-25 13:31:39,355 [ scc.git] DEBUG * branch refs/pull/5/head -> FETCH_HEAD 2026-09-25 13:31:39,389 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-09-25 13:31:40,682 [ scc.git] DEBUG From https://github.com/ome/figure 2026-09-25 13:31:40,682 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-09-25 13:31:40,711 [ scc.git] DEBUG Calling 'git fetch origin pull/19/head' 2026-09-25 13:31:41,639 [ scc.git] DEBUG From https://github.com/ome/figure 2026-09-25 13:31:41,640 [ scc.git] DEBUG * branch refs/pull/19/head -> FETCH_HEAD 2026-09-25 13:31:41,664 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:31:41,664 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:31:41,664 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:41,678 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ee5c65c3a69567451a595dea213b01b0e2e9b6ce' 2026-09-25 13:31:41,739 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:41,755 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 5 (Add sample_figures/ngff_images_figure.json) ee5c65c3a69567451a595dea213b01b0e2e9b6ce' 2026-09-25 13:31:42,147 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:31:42,238 [ scc.git] DEBUG sample_figures/ngff_images_figure.json | 3243 ++++++++++++++++++++++++++++++++ 2026-09-25 13:31:42,238 [ scc.git] DEBUG src/js/views/open_local_file_modal.js | 4 +- 2026-09-25 13:31:42,238 [ scc.git] DEBUG 2 files changed, 3245 insertions(+), 2 deletions(-) 2026-09-25 13:31:42,238 [ scc.git] DEBUG create mode 100644 sample_figures/ngff_images_figure.json 2026-09-25 13:31:42,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:31:42,465 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6af169708b720a398fcc62321cdb84dd58ee7ef8' 2026-09-25 13:31:42,547 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:42,565 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (App served by omero env) 6af169708b720a398fcc62321cdb84dd58ee7ef8' 2026-09-25 13:31:43,005 [ scc.git] DEBUG Auto-merging src/index.html 2026-09-25 13:31:43,005 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2026-09-25 13:31:43,084 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:31:43,186 [ scc.git] DEBUG .gitignore | 5 +++++ 2026-09-25 13:31:43,186 [ scc.git] DEBUG README.md | 9 +++++++++ 2026-09-25 13:31:43,186 [ scc.git] DEBUG src/index.html | 4 ++-- 2026-09-25 13:31:43,186 [ scc.git] DEBUG src/js/main.js | 7 ++++++- 2026-09-25 13:31:43,186 [ scc.git] DEBUG src/js/views/figure_view.js | 11 +++++------ 2026-09-25 13:31:43,186 [ scc.git] DEBUG src/js/views/lutpicker.js | 4 ++-- 2026-09-25 13:31:43,186 [ scc.git] DEBUG vite.config.js | 1 + 2026-09-25 13:31:43,186 [ scc.git] DEBUG 7 files changed, 30 insertions(+), 11 deletions(-) 2026-09-25 13:31:43,186 [ scc.git] DEBUG create mode 100644 .gitignore 2026-09-25 13:31:43,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:31:43,380 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...565be8a9abdb7501409d6523e77e60d463298045' 2026-09-25 13:31:43,458 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:43,471 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 19 (Fix rectangle crop) 565be8a9abdb7501409d6523e77e60d463298045' 2026-09-25 13:31:43,802 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:31:43,879 [ scc.git] DEBUG src/js/views/crop_modal_view.js | 2 +- 2026-09-25 13:31:43,879 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:31:44,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:31:44,078 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:31:44,218 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:31:44,218 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:44,237 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:31:44,365 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:31:44,469 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929fcf7090> has no local changes 2026-09-25 13:31:44,469 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/figure Excluded PRs: - PR 12 will-moore 'Browser based export' (stage: draft) - PR 9 will-moore 'Save omezarr collection' (stage: draft) Updating 3935875..5ea7e20 Previously merged: - PR 17 Rdornier 'Do not crop rotated panel at export' - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' Merged PRs: - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' - PR 14 will-moore 'App served by omero env' - PR 19 Rdornier 'Fix rectangle crop' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:31:44,670 [ scc.git] DEBUG [detached HEAD 9367d22] merge master -Dorg -Ssuccess-only 2026-09-25 13:31:44,673 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:31:44,673 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:31:44,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2026-09-25 13:31:44,893 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:31:44,893 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-09-25 13:31:44,895 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:31:44,895 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:44,923 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:31:44,944 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:31:44,944 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:31:44,968 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:31:45,022 [ scc.git] DEBUG Already up to date. 2026-09-25 13:31:45,023 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:31:45,023 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:31:45,023 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:45,041 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:31:45,174 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:31:45,174 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:45,188 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:31:45,305 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:31:45,370 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929fcf6e50> has no local changes 2026-09-25 13:31:45,370 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:31:45,541 [ scc.git] DEBUG [detached HEAD dc5c186] merge master -Dorg -Ssuccess-only 2026-09-25 13:31:45,544 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:31:45,544 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:31:45,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2026-09-25 13:31:46,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2026-09-25 13:31:46,380 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:31:47,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:47,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:31:48,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:31:48,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:49,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:31:49,143 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:31:49,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2026-09-25 13:31:50,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2026-09-25 13:31:50,143 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:31:50,143 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-09-25 13:31:50,143 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:31:50,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:50,160 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:31:50,177 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:31:50,177 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:31:50,198 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:31:50,253 [ scc.git] DEBUG Already up to date. 2026-09-25 13:31:50,253 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2026-09-25 13:31:50,725 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2026-09-25 13:31:50,725 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2026-09-25 13:31:50,752 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:31:50,753 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:31:50,753 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:50,771 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-09-25 13:31:50,795 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:50,810 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-09-25 13:31:51,036 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:31:51,119 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-25 13:31:51,119 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:31:51,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:31:51,334 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:31:51,459 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:31:51,459 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:51,473 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:31:51,592 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:31:51,650 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929fd00210> has no local changes 2026-09-25 13:31:51,650 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:31:51,788 [ scc.git] DEBUG [detached HEAD b126067] merge master -Dorg -Ssuccess-only 2026-09-25 13:31:51,790 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:31:51,790 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:31:52,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2026-09-25 13:31:52,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2026-09-25 13:31:53,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2026-09-25 13:31:53,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:54,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:31:55,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:31:55,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None 2026-09-25 13:31:56,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:31:56,090 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2026-09-25 13:31:56,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2026-09-25 13:31:57,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2026-09-25 13:31:57,146 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:31:57,146 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-09-25 13:31:57,147 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:31:57,147 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:31:57,169 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:31:57,187 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:31:57,187 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:31:57,211 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:31:57,396 [ scc.git] DEBUG Updating ce6e13c..68b7303 2026-09-25 13:31:58,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None 2026-09-25 13:31:59,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None 2026-09-25 13:32:00,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None 2026-09-25 13:32:01,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None 2026-09-25 13:32:01,218 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2026-09-25 13:32:02,082 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2026-09-25 13:32:02,082 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2026-09-25 13:32:02,110 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:32:02,110 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:32:02,110 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:32:02,127 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-09-25 13:32:02,179 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:32:02,194 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-09-25 13:32:02,388 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2026-09-25 13:32:02,468 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:32:02,537 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++-------------------- 2026-09-25 13:32:02,537 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-) 2026-09-25 13:32:02,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:32:02,730 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:32:02,865 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:32:02,865 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:32:02,882 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:32:03,022 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:32:03,080 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929fdae450> has no local changes 2026-09-25 13:32:03,080 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:32:03,241 [ scc.git] DEBUG [detached HEAD e78e1ca] merge master -Dorg -Ssuccess-only 2026-09-25 13:32:03,243 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:32:03,243 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:32:03,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2026-09-25 13:32:04,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2026-09-25 13:32:04,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2026-09-25 13:32:05,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-09-25 13:32:06,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:32:06,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:32:07,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-09-25 13:32:07,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f99a6a6869bf6259376adaea157f24955c9aa3ae?per_page=1 HTTP/1.1" 200 None 2026-09-25 13:32:08,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-09-25 13:32:08,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/status HTTP/1.1" 200 None 2026-09-25 13:32:08,715 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-09-25 13:32:09,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2026-09-25 13:32:09,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2026-09-25 13:32:10,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-09-25 13:32:11,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:32:11,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:32:12,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-09-25 13:32:12,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None 2026-09-25 13:32:13,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-09-25 13:32:13,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None 2026-09-25 13:32:13,653 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells' 2026-09-25 13:32:14,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2026-09-25 13:32:14,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2026-09-25 13:32:15,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2026-09-25 13:32:15,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2026-09-25 13:32:16,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2026-09-25 13:32:16,352 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:32:16,352 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-09-25 13:32:16,353 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:32:16,353 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:32:16,374 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:32:16,395 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:32:16,395 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:32:16,472 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:32:17,006 [ scc.git] DEBUG Updating 11d3587..d5f88d8 2026-09-25 13:32:17,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/193 HTTP/1.1" 200 None 2026-09-25 13:32:18,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/182 HTTP/1.1" 200 None 2026-09-25 13:32:19,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/194 HTTP/1.1" 200 None 2026-09-25 13:32:20,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/197 HTTP/1.1" 200 None 2026-09-25 13:32:21,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/196 HTTP/1.1" 200 None 2026-09-25 13:32:22,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/172 HTTP/1.1" 200 None 2026-09-25 13:32:23,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/192 HTTP/1.1" 200 None 2026-09-25 13:32:23,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/186 HTTP/1.1" 200 None 2026-09-25 13:32:25,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/187 HTTP/1.1" 200 None 2026-09-25 13:32:26,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None 2026-09-25 13:32:27,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None 2026-09-25 13:32:27,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None 2026-09-25 13:32:28,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None 2026-09-25 13:32:29,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None 2026-09-25 13:32:30,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None 2026-09-25 13:32:31,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None 2026-09-25 13:32:32,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None 2026-09-25 13:32:32,594 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head' 2026-09-25 13:32:33,672 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-09-25 13:32:33,672 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD 2026-09-25 13:32:33,706 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2026-09-25 13:32:34,485 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-09-25 13:32:34,485 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2026-09-25 13:32:34,515 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:32:34,516 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:32:34,516 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:32:34,532 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-09-25 13:32:34,638 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:32:34,654 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-09-25 13:32:35,115 [ scc.git] DEBUG Auto-merging README.rst 2026-09-25 13:32:35,115 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-09-25 13:32:35,115 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/cli.py 2026-09-25 13:32:35,115 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-09-25 13:32:35,115 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-09-25 13:32:35,115 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2026-09-25 13:32:35,115 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py 2026-09-25 13:32:35,115 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py 2026-09-25 13:32:35,115 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/util.py 2026-09-25 13:32:35,115 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-09-25 13:32:35,116 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-09-25 13:32:35,141 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-25 13:32:35,142 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-25 13:32:35,185 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-09-25 13:32:35,433 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-09-25 13:32:35,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:32:35,622 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-09-25 13:32:35,702 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-09-25 13:32:35,738 [ scc.git] INFO - PR 174 will-moore 'Skip wells' Conflicting PR. Removed from build [OMERO-plugins-push#87](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/consoleText) for more details. Possible conflicts: - Upstream changes - test/integration/clitest/test_export.py - src/omero_zarr/raw_pixels.py - src/omero_zarr/masks.py - src/omero_zarr/util.py - src/omero_zarr/cli.py --conflicts 2026-09-25 13:32:35,752 [ scc.config] DEBUG Found github.token 2026-09-25 13:32:35,752 [ scc.git] DEBUG Not adding comment to issue #174, already --conflicts. 2026-09-25 13:32:35,752 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-09-25 13:32:35,831 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:32:35,845 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-09-25 13:32:36,171 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-09-25 13:32:36,171 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-09-25 13:32:36,171 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-09-25 13:32:36,171 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-09-25 13:32:36,194 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-25 13:32:36,196 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-25 13:32:36,228 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-09-25 13:32:36,408 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-09-25 13:32:36,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:32:36,598 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-09-25 13:32:36,691 [ scc.git] DEBUG Calling 'git diff --name-only 9530c10ba9823fcba6b39139987bf4bcd4a60179..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-09-25 13:32:36,742 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Conflicting PR. Removed from build [OMERO-plugins-push#87](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/consoleText) for more details. Possible conflicts: - PR #174 will-moore 'Skip wells' - test/integration/clitest/test_export.py - src/omero_zarr/masks.py - Upstream changes - test/integration/clitest/test_export.py - src/omero_zarr/masks.py --conflicts 2026-09-25 13:32:36,757 [ scc.config] DEBUG Found github.token 2026-09-25 13:32:36,757 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts. 2026-09-25 13:32:36,757 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:32:36,893 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:32:36,893 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:32:36,910 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:32:37,039 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:32:37,117 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929eb78950> has no local changes 2026-09-25 13:32:37,118 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..d5f88d8 Previously merged: - PR 193 dominikl 'Only parse import uris if stated' - PR 182 will-moore 'Revert "Remove support for Plate import"' - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' - PR 197 pwalczysko 'Fix pragma' - PR 196 will-moore 'Storage options only if needed' - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:32:37,282 [ scc.git] DEBUG [detached HEAD c46c33f] merge master -Dorg -Ssuccess-only 2026-09-25 13:32:37,284 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:32:37,284 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:32:37,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2026-09-25 13:32:38,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706 HTTP/1.1" 200 None 2026-09-25 13:32:38,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706/comments HTTP/1.1" 200 None 2026-09-25 13:32:39,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3?page=1 HTTP/1.1" 200 None 2026-09-25 13:32:39,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:32:40,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:32:40,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3?page=1 HTTP/1.1" 200 None 2026-09-25 13:32:41,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/d5fb705652bca5db75b24fb3e9421f3be09e9fa3?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:32:41,356 [ scc.repo] DEBUG - PR 706 will-moore 'Figure repo migration' 2026-09-25 13:32:41,356 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:32:41,356 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-09-25 13:32:41,357 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:32:41,357 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:32:41,378 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:32:41,406 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:32:41,406 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:32:41,488 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:32:43,048 [ scc.git] ERROR stderr (git merge --ff-only origin/master): Updating files: 87% (72/82) Updating files: 89% (73/82) Updating files: 90% (74/82) Updating files: 91% (75/82) Updating files: 92% (76/82) Updating files: 93% (77/82) Updating files: 95% (78/82) Updating files: 96% (79/82) Updating files: 97% (80/82) Updating files: 98% (81/82) Updating files: 100% (82/82) Updating files: 100% (82/82), done. 2026-09-25 13:32:43,048 [ scc.git] DEBUG Updating 9cc36cde..3195c3df 2026-09-25 13:32:43,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/704 HTTP/1.1" 200 None 2026-09-25 13:32:44,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/703 HTTP/1.1" 200 None 2026-09-25 13:32:45,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/700 HTTP/1.1" 200 None 2026-09-25 13:32:46,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/692 HTTP/1.1" 200 None 2026-09-25 13:32:47,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/701 HTTP/1.1" 200 None 2026-09-25 13:32:47,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/698 HTTP/1.1" 200 None 2026-09-25 13:32:48,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/697 HTTP/1.1" 200 None 2026-09-25 13:32:49,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/695 HTTP/1.1" 200 None 2026-09-25 13:32:50,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/693 HTTP/1.1" 200 None 2026-09-25 13:32:51,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/691 HTTP/1.1" 200 None 2026-09-25 13:32:52,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/686 HTTP/1.1" 200 None 2026-09-25 13:32:53,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/690 HTTP/1.1" 200 None 2026-09-25 13:32:54,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/681 HTTP/1.1" 200 None 2026-09-25 13:32:54,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/688 HTTP/1.1" 200 None 2026-09-25 13:32:55,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/685 HTTP/1.1" 200 None 2026-09-25 13:32:56,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/683 HTTP/1.1" 200 None 2026-09-25 13:32:57,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/680 HTTP/1.1" 200 None 2026-09-25 13:32:58,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/684 HTTP/1.1" 200 None 2026-09-25 13:32:58,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/682 HTTP/1.1" 200 None 2026-09-25 13:32:59,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/679 HTTP/1.1" 200 None 2026-09-25 13:33:00,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/677 HTTP/1.1" 200 None 2026-09-25 13:33:01,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/666 HTTP/1.1" 200 None 2026-09-25 13:33:02,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/676 HTTP/1.1" 200 None 2026-09-25 13:33:03,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/669 HTTP/1.1" 200 None 2026-09-25 13:33:04,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/662 HTTP/1.1" 200 None 2026-09-25 13:33:04,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/663 HTTP/1.1" 200 None 2026-09-25 13:33:06,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/674 HTTP/1.1" 200 None 2026-09-25 13:33:07,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/675 HTTP/1.1" 200 None 2026-09-25 13:33:08,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/671 HTTP/1.1" 200 None 2026-09-25 13:33:09,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/672 HTTP/1.1" 200 None 2026-09-25 13:33:10,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/667 HTTP/1.1" 200 None 2026-09-25 13:33:11,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/665 HTTP/1.1" 200 None 2026-09-25 13:33:12,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/656 HTTP/1.1" 200 None 2026-09-25 13:33:13,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/670 HTTP/1.1" 200 None 2026-09-25 13:33:13,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/664 HTTP/1.1" 200 None 2026-09-25 13:33:14,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/654 HTTP/1.1" 200 None 2026-09-25 13:33:15,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/648 HTTP/1.1" 200 None 2026-09-25 13:33:16,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/661 HTTP/1.1" 200 None 2026-09-25 13:33:17,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/649 HTTP/1.1" 200 None 2026-09-25 13:33:18,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/657 HTTP/1.1" 200 None 2026-09-25 13:33:19,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 None 2026-09-25 13:33:20,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 None 2026-09-25 13:33:21,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 None 2026-09-25 13:33:22,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 None 2026-09-25 13:33:23,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 None 2026-09-25 13:33:24,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 None 2026-09-25 13:33:25,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 None 2026-09-25 13:33:25,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 None 2026-09-25 13:33:26,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 None 2026-09-25 13:33:27,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None 2026-09-25 13:33:28,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None 2026-09-25 13:33:29,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None 2026-09-25 13:33:30,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None 2026-09-25 13:33:30,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None 2026-09-25 13:33:31,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None 2026-09-25 13:33:32,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None 2026-09-25 13:33:33,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None 2026-09-25 13:33:34,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None 2026-09-25 13:33:34,006 [ scc.git] DEBUG Calling 'git fetch origin pull/706/head' 2026-09-25 13:33:34,637 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-09-25 13:33:34,637 [ scc.git] DEBUG * branch refs/pull/706/head -> FETCH_HEAD 2026-09-25 13:33:34,667 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:33:34,667 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:33:34,667 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:33:34,683 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d5fb705652bca5db75b24fb3e9421f3be09e9fa3' 2026-09-25 13:33:34,836 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:33:34,853 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration) d5fb705652bca5db75b24fb3e9421f3be09e9fa3' 2026-09-25 13:33:35,659 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:33:35,782 [ scc.git] DEBUG .bumpversion.cfg | 4 +- 2026-09-25 13:33:35,783 [ scc.git] DEBUG .github/workflows/omero_plugin.yml | 2 + 2026-09-25 13:33:35,783 [ scc.git] DEBUG .github/workflows/pages.yml | 28 - 2026-09-25 13:33:35,783 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 + 2026-09-25 13:33:35,783 [ scc.git] DEBUG .gitignore | 7 +- 2026-09-25 13:33:35,783 [ scc.git] DEBUG .gitmodules | 3 + 2026-09-25 13:33:35,783 [ scc.git] DEBUG .omeroci/app-srv | 4 +- 2026-09-25 13:33:35,783 [ scc.git] DEBUG README.rst | 76 +- 2026-09-25 13:33:35,783 [ scc.git] DEBUG deploy_build.sh | 21 +- 2026-09-25 13:33:35,783 [ scc.git] DEBUG deploy_ghpages.sh | 1 + 2026-09-25 13:33:35,783 [ scc.git] DEBUG figure | 1 + 2026-09-25 13:33:35,783 [ scc.git] DEBUG omero_figure/scripts/__init__.py | 0 2026-09-25 13:33:35,783 [ scc.git] DEBUG omero_figure/scripts/omero/__init__.py | 0 2026-09-25 13:33:35,783 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 3562 -------------------- 2026-09-25 13:33:35,783 [ scc.git] DEBUG .../scripts/omero/figure_scripts/__init__.py | 0 2026-09-25 13:33:35,783 [ scc.git] DEBUG .../scripts/omero/figure_scripts/pilfonts/B24.pbm | Bin 8441 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG .../scripts/omero/figure_scripts/pilfonts/B24.pil | Bin 5143 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG .../omero/figure_scripts/pilfonts/FreeSans.ttf | Bin 568896 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG .../omero/figure_scripts/pilfonts/FreeSansBold.ttf | Bin 359272 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG .../pilfonts/FreeSansBoldOblique.ttf | Bin 301188 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG .../figure_scripts/pilfonts/FreeSansOblique.ttf | Bin 441432 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG omero_figure/views.py | 52 +- 2026-09-25 13:33:35,783 [ scc.git] DEBUG package-lock.json | 1499 -------- 2026-09-25 13:33:35,783 [ scc.git] DEBUG package.json | 51 - 2026-09-25 13:33:35,783 [ scc.git] DEBUG setup.py | 8 + 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/css/figure.css | 1551 --------- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/html/dialogs/scriptManagerDialog.html | 86 - 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/arrow-icon-16.png | Bin 2878 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/button-down-grey.png | Bin 3274 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/button-down.png | Bin 1879 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/button-flat.png | Bin 2827 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/button-up.png | Bin 2111 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/crop20.png | Bin 3022 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/cursor-icon-16.png | Bin 245 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/ellipse-icon-16.png | Bin 3020 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/gradient.png | Bin 3405 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/hue.png | Bin 2837 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/line-icon-16.png | Bin 2865 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/luts_10.png | Bin 18556 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/markdown_dark32x20.png | Bin 3116 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/markdown_light32x20.png | Bin 3089 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/point-icon-24.png | Bin 2477 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/polygon-icon-16.png | Bin 2880 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/polyline-icon-16.png | Bin 2874 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/projection20.png | Bin 3585 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/square-outline-icon-16.png | Bin 96 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/images/text-icon-24.png | Bin 2477 -> 0 bytes 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/index.html | 1986 ----------- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/main.js | 189 -- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/models/figure_model.js | 1398 -------- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/models/panel_model.js | 1577 --------- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/models/roi_model.js | 149 - 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/models/undo.js | 282 -- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/models/zarr_utils.js | 483 --- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/shapeEditorTest.js | 454 --- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/shape_editor/ellipse.js | 604 ---- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/shape_editor/line.js | 612 ---- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/shape_editor/point.js | 527 --- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/shape_editor/polygon.js | 462 --- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/shape_editor/rect.js | 618 ---- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 992 ------ 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/shape_editor/text.js | 564 ---- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/views/backbone.mousetrap.js | 69 - 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/views/channel_slider_view.js | 450 --- 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/views/chgrp_modal_view.js | 143 - 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/views/colorbar_form_view.js | 124 - 2026-09-25 13:33:35,783 [ scc.git] DEBUG src/js/views/colorpicker.js | 143 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/crop_modal_view.js | 660 ---- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/figure_view.js | 1125 ------- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/files.js | 374 -- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/info_panel_view.js | 293 -- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/label_suggestions.js | 753 ----- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/labels_from_maps_modal.js | 197 -- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/legend_view.js | 174 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/lutpicker.js | 181 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/modal_views.js | 536 --- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/open_local_file_modal.js | 77 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/panel_view.js | 501 --- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/raphael-rect.js | 291 -- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/right_panel_view.js | 1572 --------- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 250 -- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/roi_modal_view.js | 645 ---- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/scalebar_form_view.js | 230 -- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/svg_model_view.js | 441 --- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/util.csrf.js | 83 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/util.js | 397 --- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/js/views/zt_sliders_view.js | 332 -- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/scss/styles.scss | 2 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/shapeEditorTest.html | 198 -- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/channel_slider.template.html | 90 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/checkbox_template.html | 4 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/colorbar.template.html | 42 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/colorbar_form.template.html | 137 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/figure_panel.template.html | 6 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/files/figure_file_item.template.html | 32 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/image_display_options.template.html | 34 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/info_panel.template.html | 54 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/labels/label.template.html | 8 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG .../labels/label_right_vertical.template.html | 8 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/labels/label_table.template.html | 11 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/labels/label_vertical.template.html | 8 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/labels_form.template.html | 13 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/labels_form_inner.template.html | 128 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/lut_picker.template.html | 21 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG .../modal_dialogs/crop_modal_roi.template.html | 30 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG .../modal_dialogs/paper_setup_modal.template.html | 108 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG .../modal_dialogs/preview_id_change.template.html | 65 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG .../modal_dialogs/roi_modal_roi.template.html | 56 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG .../modal_dialogs/roi_modal_shape.template.html | 42 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG .../modal_dialogs/roi_zt_buttons.template.html | 9 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/rois_form.template.html | 246 -- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/scalebar_form.template.html | 154 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/scalebar_panel.template.html | 10 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/shapes/shape_item_template.html | 12 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/shapes/shape_sidebar.template.html | 56 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/shapes/shape_toolbar.template.html | 226 -- 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/viewport.template.html | 5 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/viewport_inner.template.html | 12 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/xywh_panel.template.html | 60 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/templates/zoom_crop.template.html | 28 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG src/test.html | 25 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG vite.config.js | 32 - 2026-09-25 13:33:35,784 [ scc.git] DEBUG 122 files changed, 115 insertions(+), 29753 deletions(-) 2026-09-25 13:33:35,784 [ scc.git] DEBUG delete mode 100644 .github/workflows/pages.yml 2026-09-25 13:33:35,784 [ scc.git] DEBUG create mode 100644 .gitmodules 2026-09-25 13:33:35,784 [ scc.git] DEBUG create mode 160000 figure 2026-09-25 13:33:35,784 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/__init__.py 2026-09-25 13:33:35,784 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/__init__.py 2026-09-25 13:33:35,784 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-09-25 13:33:35,784 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/__init__.py 2026-09-25 13:33:35,784 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/B24.pbm 2026-09-25 13:33:35,784 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/B24.pil 2026-09-25 13:33:35,784 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSans.ttf 2026-09-25 13:33:35,784 [ scc.git] DEBUG delete mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansBold.ttf 2026-09-25 13:33:35,784 [ scc.git] DEBUG delete mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansBoldOblique.ttf 2026-09-25 13:33:35,784 [ scc.git] DEBUG delete mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansOblique.ttf 2026-09-25 13:33:35,784 [ scc.git] DEBUG delete mode 100644 package-lock.json 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 package.json 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/css/figure.css 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/html/dialogs/scriptManagerDialog.html 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/images/arrow-icon-16.png 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/images/button-down-grey.png 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/images/button-down.png 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/images/button-flat.png 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/images/button-up.png 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/images/crop20.png 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/images/cursor-icon-16.png 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/images/ellipse-icon-16.png 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/images/gradient.png 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 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2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/main.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/models/figure_model.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/models/panel_model.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/models/roi_model.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/models/undo.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/models/zarr_utils.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/shapeEditorTest.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/ellipse.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/line.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/point.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/polygon.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/rect.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/shape_manager.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/text.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/backbone.mousetrap.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/channel_slider_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/chgrp_modal_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/colorbar_form_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/colorpicker.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/crop_modal_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/figure_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/files.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/info_panel_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/label_suggestions.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/labels_from_maps_modal.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/legend_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/lutpicker.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/modal_views.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/open_local_file_modal.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/panel_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/raphael-rect.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/right_panel_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/roi_loader_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/roi_modal_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/scalebar_form_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/svg_model_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/util.csrf.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/util.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/js/views/zt_sliders_view.js 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/scss/styles.scss 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/shapeEditorTest.html 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/templates/channel_slider.template.html 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/templates/checkbox_template.html 2026-09-25 13:33:35,785 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar.template.html 2026-09-25 13:33:35,819 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar_form.template.html 2026-09-25 13:33:35,819 [ scc.git] DEBUG delete mode 100644 src/templates/figure_panel.template.html 2026-09-25 13:33:35,819 [ scc.git] DEBUG delete mode 100644 src/templates/files/figure_file_item.template.html 2026-09-25 13:33:35,819 [ scc.git] DEBUG delete mode 100644 src/templates/image_display_options.template.html 2026-09-25 13:33:35,819 [ scc.git] DEBUG delete mode 100644 src/templates/info_panel.template.html 2026-09-25 13:33:35,819 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label.template.html 2026-09-25 13:33:35,819 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_right_vertical.template.html 2026-09-25 13:33:35,819 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_table.template.html 2026-09-25 13:33:35,819 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_vertical.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form_inner.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/lut_picker.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/crop_modal_roi.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/paper_setup_modal.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/preview_id_change.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_roi.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_shape.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_zt_buttons.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/rois_form.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_form.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_panel.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_item_template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_sidebar.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_toolbar.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/viewport.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/viewport_inner.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/xywh_panel.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/templates/zoom_crop.template.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100644 src/test.html 2026-09-25 13:33:35,820 [ scc.git] DEBUG delete mode 100755 vite.config.js 2026-09-25 13:33:36,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:33:36,004 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:33:36,123 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:33:36,123 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:33:36,136 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:33:36,248 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:33:36,339 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929eb53790> has no local changes 2026-09-25 13:33:36,339 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Updating 9cc36cde..3195c3df Previously merged: - PR 704 jburel 'Revert commit 49ae9c9' - PR 703 will-moore 'Readme remove rc' - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' - PR 692 will-moore 'colorbar lut background fix' - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' - PR 691 dependabot[bot] 'Bump esbuild and vite' - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' - PR 685 will-moore 'Fix static files links for release build' - PR 683 will-moore 'Add touch support for clicking on single panel' - PR 680 will-moore 'Use --pre install for export script in README' - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' - PR 666 will-moore 'Standalone app' - PR 676 dependabot[bot] 'Bump picomatch' - PR 669 will-moore 'Standalone python script' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 706 will-moore 'Figure repo migration' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:33:36,527 [ scc.git] DEBUG [detached HEAD 84194eae] merge master -Dorg -Ssuccess-only 2026-09-25 13:33:36,533 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:33:36,534 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:33:36,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2026-09-25 13:33:37,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2026-09-25 13:33:37,408 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:33:38,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None 2026-09-25 13:33:38,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:33:39,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:33:39,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None 2026-09-25 13:33:40,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:33:40,312 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:33:40,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2026-09-25 13:33:41,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2026-09-25 13:33:41,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None 2026-09-25 13:33:42,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:33:42,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None 2026-09-25 13:33:43,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:33:43,404 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2026-09-25 13:33:43,404 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:33:43,405 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-09-25 13:33:43,406 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:33:43,406 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:33:43,432 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:33:43,451 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:33:43,451 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:33:43,477 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:33:43,548 [ scc.git] DEBUG Already up to date. 2026-09-25 13:33:43,548 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2026-09-25 13:33:44,129 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-09-25 13:33:44,129 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2026-09-25 13:33:44,160 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2026-09-25 13:33:44,612 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-09-25 13:33:44,612 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2026-09-25 13:33:44,636 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:33:44,637 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:33:44,637 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:33:44,668 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-09-25 13:33:44,698 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:33:44,712 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-09-25 13:33:44,924 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2026-09-25 13:33:45,014 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:33:45,097 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2026-09-25 13:33:45,097 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2026-09-25 13:33:45,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:33:45,282 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-09-25 13:33:45,315 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:33:45,330 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-09-25 13:33:45,541 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:33:45,627 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-25 13:33:45,628 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:33:45,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:33:45,820 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:33:45,954 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:33:45,954 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:33:45,969 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:33:46,086 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:33:46,145 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929eb59810> has no local changes 2026-09-25 13:33:46,145 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:33:46,292 [ scc.git] DEBUG [detached HEAD d17b7bd] merge master -Dorg -Ssuccess-only 2026-09-25 13:33:46,293 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:33:46,293 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:33:46,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2026-09-25 13:33:47,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2026-09-25 13:33:47,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2026-09-25 13:33:48,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2026-09-25 13:33:48,323 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:33:48,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None 2026-09-25 13:33:49,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:33:50,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None 2026-09-25 13:33:50,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:33:50,595 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-09-25 13:33:51,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2026-09-25 13:33:51,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2026-09-25 13:33:52,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2026-09-25 13:33:52,161 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:33:52,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None 2026-09-25 13:33:53,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:33:53,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None 2026-09-25 13:33:54,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:33:54,327 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-09-25 13:33:54,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2026-09-25 13:33:54,856 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:33:55,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None 2026-09-25 13:33:55,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:33:56,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None 2026-09-25 13:33:56,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:33:56,927 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-09-25 13:33:57,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2026-09-25 13:33:57,421 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:33:58,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None 2026-09-25 13:33:58,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:33:59,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None 2026-09-25 13:33:59,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:33:59,496 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-09-25 13:34:00,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2026-09-25 13:34:00,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2026-09-25 13:34:00,553 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:34:01,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:01,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:34:02,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:02,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:34:02,716 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-09-25 13:34:03,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2026-09-25 13:34:03,232 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:34:03,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:04,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:34:04,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:05,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:34:05,481 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-09-25 13:34:05,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2026-09-25 13:34:05,997 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:34:06,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:07,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:34:07,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:08,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:34:08,165 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-09-25 13:34:08,165 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:34:08,165 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-09-25 13:34:08,166 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:34:08,166 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:34:08,189 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:34:08,211 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:34:08,211 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:34:08,240 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:34:08,307 [ scc.git] DEBUG Already up to date. 2026-09-25 13:34:08,307 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2026-09-25 13:34:08,769 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-25 13:34:08,769 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2026-09-25 13:34:08,797 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2026-09-25 13:34:09,274 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-25 13:34:09,274 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2026-09-25 13:34:09,298 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2026-09-25 13:34:09,773 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-25 13:34:09,773 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2026-09-25 13:34:09,799 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2026-09-25 13:34:10,253 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-25 13:34:10,253 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2026-09-25 13:34:10,276 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2026-09-25 13:34:10,753 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-25 13:34:10,753 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2026-09-25 13:34:10,777 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2026-09-25 13:34:11,221 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-25 13:34:11,221 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2026-09-25 13:34:11,244 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2026-09-25 13:34:11,725 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-25 13:34:11,726 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2026-09-25 13:34:11,751 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:34:11,751 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:34:11,751 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:34:11,770 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-09-25 13:34:11,792 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:34:11,806 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-09-25 13:34:12,013 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:34:12,102 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2026-09-25 13:34:12,102 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2026-09-25 13:34:12,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:34:12,289 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-09-25 13:34:12,314 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:34:12,328 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-09-25 13:34:12,489 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-25 13:34:12,563 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:34:12,628 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2026-09-25 13:34:12,628 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2026-09-25 13:34:12,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:34:12,820 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-09-25 13:34:12,848 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:34:12,861 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-09-25 13:34:13,053 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-25 13:34:13,053 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-09-25 13:34:13,081 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-25 13:34:13,083 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-25 13:34:13,116 [ scc.git] DEBUG Calling 'git reset --hard a5fb4f7b0e5af4d2761279f04ce2ce769f310b0d' 2026-09-25 13:34:13,292 [ scc.git] DEBUG HEAD is now at a5fb4f7 merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2026-09-25 13:34:13,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:34:13,498 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-09-25 13:34:13,524 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-09-25 13:34:13,542 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#87](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2026-09-25 13:34:13,553 [ scc.config] DEBUG Found github.token 2026-09-25 13:34:13,553 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2026-09-25 13:34:13,553 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-09-25 13:34:13,581 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:34:13,595 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-09-25 13:34:13,766 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-25 13:34:13,840 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:34:13,912 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2026-09-25 13:34:13,912 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2026-09-25 13:34:14,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:34:14,084 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-09-25 13:34:14,121 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:34:14,137 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-09-25 13:34:14,310 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-25 13:34:14,379 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:34:14,450 [ scc.git] DEBUG package-lock.json | 6 +++--- 2026-09-25 13:34:14,450 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2026-09-25 13:34:14,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:34:14,638 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-09-25 13:34:14,670 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:34:14,684 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-09-25 13:34:14,890 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-25 13:34:14,890 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-09-25 13:34:14,922 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-25 13:34:14,923 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-25 13:34:14,955 [ scc.git] DEBUG Calling 'git reset --hard 5fb9f226459a6bb9ca13e1c25914c3b3ed448b7a' 2026-09-25 13:34:15,139 [ scc.git] DEBUG HEAD is now at 5fb9f22 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-09-25 13:34:15,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:34:15,324 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-09-25 13:34:15,346 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-09-25 13:34:15,364 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#87](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2026-09-25 13:34:15,376 [ scc.config] DEBUG Found github.token 2026-09-25 13:34:15,376 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2026-09-25 13:34:15,376 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-09-25 13:34:15,402 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:34:15,416 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-09-25 13:34:15,611 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-25 13:34:15,611 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-09-25 13:34:15,634 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-25 13:34:15,636 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-25 13:34:15,665 [ scc.git] DEBUG Calling 'git reset --hard 5fb9f226459a6bb9ca13e1c25914c3b3ed448b7a' 2026-09-25 13:34:15,807 [ scc.git] DEBUG HEAD is now at 5fb9f22 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-09-25 13:34:16,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:34:16,004 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-09-25 13:34:16,027 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-09-25 13:34:16,044 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#87](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2026-09-25 13:34:16,054 [ scc.config] DEBUG Found github.token 2026-09-25 13:34:16,055 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2026-09-25 13:34:16,055 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:34:16,174 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:34:16,174 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:34:16,189 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:34:16,315 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:34:16,388 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929eb88f50> has no local changes 2026-09-25 13:34:16,388 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:34:16,592 [ scc.git] DEBUG [detached HEAD 8308499] merge master -Dorg -Ssuccess-only 2026-09-25 13:34:16,593 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:34:16,593 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:34:16,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2026-09-25 13:34:17,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/567 HTTP/1.1" 200 None 2026-09-25 13:34:17,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/38a260841feb643eaf6b5a098e1b248a6f0af57a?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:18,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/38a260841feb643eaf6b5a098e1b248a6f0af57a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:34:19,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/38a260841feb643eaf6b5a098e1b248a6f0af57a/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:34:19,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/38a260841feb643eaf6b5a098e1b248a6f0af57a?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:20,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/38a260841feb643eaf6b5a098e1b248a6f0af57a?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:34:20,093 [ scc.repo] DEBUG - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' 2026-09-25 13:34:20,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/566 HTTP/1.1" 200 None 2026-09-25 13:34:20,613 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:34:21,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a0f64fab8b6ff36d8cc38e97fee618e2cd043626?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:21,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a0f64fab8b6ff36d8cc38e97fee618e2cd043626/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:34:22,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a0f64fab8b6ff36d8cc38e97fee618e2cd043626/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:34:23,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a0f64fab8b6ff36d8cc38e97fee618e2cd043626?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:23,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/a0f64fab8b6ff36d8cc38e97fee618e2cd043626?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:34:23,603 [ scc.repo] DEBUG - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' 2026-09-25 13:34:24,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/565 HTTP/1.1" 200 None 2026-09-25 13:34:24,106 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:34:24,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/5bf4a3df9d457e59731fdbcc113c1da254f5d4f0?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:25,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/5bf4a3df9d457e59731fdbcc113c1da254f5d4f0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:34:25,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/5bf4a3df9d457e59731fdbcc113c1da254f5d4f0/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:34:26,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/5bf4a3df9d457e59731fdbcc113c1da254f5d4f0?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:26,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/5bf4a3df9d457e59731fdbcc113c1da254f5d4f0?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:34:26,955 [ scc.repo] DEBUG - PR 565 dependabot[bot] 'Bump qs and body-parser' 2026-09-25 13:34:27,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/564 HTTP/1.1" 200 None 2026-09-25 13:34:27,471 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:34:28,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/bce482eff7b13b8edfef15f2a68f00129c6a707f?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:28,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/bce482eff7b13b8edfef15f2a68f00129c6a707f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:34:29,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/bce482eff7b13b8edfef15f2a68f00129c6a707f/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:34:29,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/bce482eff7b13b8edfef15f2a68f00129c6a707f?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:30,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/bce482eff7b13b8edfef15f2a68f00129c6a707f?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:34:30,321 [ scc.repo] DEBUG - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' 2026-09-25 13:34:30,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532 HTTP/1.1" 200 None 2026-09-25 13:34:31,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532/comments HTTP/1.1" 200 None 2026-09-25 13:34:31,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:32,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:34:33,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:34:33,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:34,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:34:34,070 [ scc.repo] DEBUG - PR 532 will-moore 'Zarr layers' 2026-09-25 13:34:34,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2026-09-25 13:34:35,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2026-09-25 13:34:35,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:36,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:34:36,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None 2026-09-25 13:34:37,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:34:37,075 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2026-09-25 13:34:37,075 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:34:37,075 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-09-25 13:34:37,076 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:34:37,076 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:34:37,104 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:34:37,132 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:34:37,132 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:34:37,217 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:34:38,110 [ scc.git] DEBUG Updating 7a798cee..6c554250 2026-09-25 13:34:38,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/562 HTTP/1.1" 200 None 2026-09-25 13:34:39,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/563 HTTP/1.1" 200 None 2026-09-25 13:34:40,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/559 HTTP/1.1" 200 None 2026-09-25 13:34:41,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/558 HTTP/1.1" 200 None 2026-09-25 13:34:41,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/557 HTTP/1.1" 200 None 2026-09-25 13:34:42,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/541 HTTP/1.1" 200 None 2026-09-25 13:34:43,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/556 HTTP/1.1" 200 None 2026-09-25 13:34:44,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/554 HTTP/1.1" 200 None 2026-09-25 13:34:45,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/553 HTTP/1.1" 200 None 2026-09-25 13:34:46,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/552 HTTP/1.1" 200 None 2026-09-25 13:34:46,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/551 HTTP/1.1" 200 None 2026-09-25 13:34:47,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/550 HTTP/1.1" 200 None 2026-09-25 13:34:48,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/549 HTTP/1.1" 200 None 2026-09-25 13:34:49,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/548 HTTP/1.1" 200 None 2026-09-25 13:34:50,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/547 HTTP/1.1" 200 None 2026-09-25 13:34:50,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/540 HTTP/1.1" 200 None 2026-09-25 13:34:51,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/539 HTTP/1.1" 200 None 2026-09-25 13:34:52,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/537 HTTP/1.1" 200 None 2026-09-25 13:34:53,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/535 HTTP/1.1" 200 None 2026-09-25 13:34:54,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/527 HTTP/1.1" 200 None 2026-09-25 13:34:54,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/534 HTTP/1.1" 200 None 2026-09-25 13:34:55,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/533 HTTP/1.1" 200 None 2026-09-25 13:34:56,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/530 HTTP/1.1" 200 None 2026-09-25 13:34:57,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/528 HTTP/1.1" 200 None 2026-09-25 13:34:57,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/529 HTTP/1.1" 200 None 2026-09-25 13:34:58,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/526 HTTP/1.1" 200 None 2026-09-25 13:34:59,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/525 HTTP/1.1" 200 None 2026-09-25 13:35:00,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/524 HTTP/1.1" 200 None 2026-09-25 13:35:01,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/523 HTTP/1.1" 200 None 2026-09-25 13:35:01,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/522 HTTP/1.1" 200 None 2026-09-25 13:35:02,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/521 HTTP/1.1" 200 None 2026-09-25 13:35:03,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/520 HTTP/1.1" 200 None 2026-09-25 13:35:04,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/519 HTTP/1.1" 200 None 2026-09-25 13:35:05,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/518 HTTP/1.1" 200 None 2026-09-25 13:35:06,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/514 HTTP/1.1" 200 None 2026-09-25 13:35:07,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/513 HTTP/1.1" 200 None 2026-09-25 13:35:07,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/512 HTTP/1.1" 200 None 2026-09-25 13:35:08,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/465 HTTP/1.1" 200 None 2026-09-25 13:35:09,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/517 HTTP/1.1" 200 None 2026-09-25 13:35:10,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/516 HTTP/1.1" 200 None 2026-09-25 13:35:11,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None 2026-09-25 13:35:12,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None 2026-09-25 13:35:12,200 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2026-09-25 13:35:12,989 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-09-25 13:35:12,989 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2026-09-25 13:35:13,021 [ scc.git] DEBUG Calling 'git fetch origin pull/532/head' 2026-09-25 13:35:13,610 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-09-25 13:35:13,610 [ scc.git] DEBUG * branch refs/pull/532/head -> FETCH_HEAD 2026-09-25 13:35:13,643 [ scc.git] DEBUG Calling 'git fetch origin pull/564/head' 2026-09-25 13:35:14,217 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-09-25 13:35:14,217 [ scc.git] DEBUG * branch refs/pull/564/head -> FETCH_HEAD 2026-09-25 13:35:14,248 [ scc.git] DEBUG Calling 'git fetch origin pull/565/head' 2026-09-25 13:35:14,792 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-09-25 13:35:14,792 [ scc.git] DEBUG * branch refs/pull/565/head -> FETCH_HEAD 2026-09-25 13:35:14,825 [ scc.git] DEBUG Calling 'git fetch origin pull/566/head' 2026-09-25 13:35:15,379 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-09-25 13:35:15,379 [ scc.git] DEBUG * branch refs/pull/566/head -> FETCH_HEAD 2026-09-25 13:35:15,408 [ scc.git] DEBUG Calling 'git fetch origin pull/567/head' 2026-09-25 13:35:16,006 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-09-25 13:35:16,006 [ scc.git] DEBUG * branch refs/pull/567/head -> FETCH_HEAD 2026-09-25 13:35:16,037 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:35:16,037 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:35:16,037 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:16,057 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2026-09-25 13:35:16,144 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:16,160 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2026-09-25 13:35:16,535 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2026-09-25 13:35:16,613 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:35:16,697 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2026-09-25 13:35:16,697 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2026-09-25 13:35:16,697 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2026-09-25 13:35:16,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:35:16,895 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-09-25 13:35:16,980 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:16,993 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 532 (Zarr layers) fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-09-25 13:35:18,002 [ scc.git] DEBUG Auto-merging css/app.css 2026-09-25 13:35:18,002 [ scc.git] DEBUG CONFLICT (content): Merge conflict in css/app.css 2026-09-25 13:35:18,002 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-25 13:35:18,002 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-09-25 13:35:18,002 [ scc.git] DEBUG Auto-merging package.json 2026-09-25 13:35:18,002 [ scc.git] DEBUG Auto-merging src/app/context.js 2026-09-25 13:35:18,002 [ scc.git] DEBUG Auto-merging src/model/image_config.js 2026-09-25 13:35:18,002 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2026-09-25 13:35:18,002 [ scc.git] DEBUG Auto-merging src/viewers/viewer/source/Image.js 2026-09-25 13:35:18,002 [ scc.git] DEBUG Auto-merging webpack.dev.config.js 2026-09-25 13:35:18,031 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-25 13:35:18,034 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-25 13:35:18,108 [ scc.git] DEBUG Calling 'git reset --hard 6677dc546713074430b0bb7455674dfa57110228' 2026-09-25 13:35:18,577 [ scc.git] DEBUG HEAD is now at 6677dc54 merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 2026-09-25 13:35:18,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:35:18,762 [ scc.git] DEBUG Calling 'git merge-base 6c554250ea1528ff339ac06c3fe1e0621fe48576 fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-09-25 13:35:18,830 [ scc.git] DEBUG Calling 'git diff --name-only 0b7eaf71f7e3f5c7289fab4bf857094bdadce1e4..6c554250ea1528ff339ac06c3fe1e0621fe48576' 2026-09-25 13:35:18,883 [ scc.git] INFO - PR 532 will-moore 'Zarr layers' Conflicting PR. Removed from build [OMERO-plugins-push#87](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/consoleText) for more details. Possible conflicts: - Upstream changes - css/app.css - package-lock.json --conflicts 2026-09-25 13:35:18,896 [ scc.config] DEBUG Found github.token 2026-09-25 13:35:18,896 [ scc.git] DEBUG Not adding comment to issue #532, already --conflicts. 2026-09-25 13:35:18,896 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bce482eff7b13b8edfef15f2a68f00129c6a707f' 2026-09-25 13:35:19,006 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:19,021 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 564 (Bump fast-uri from 3.1.5 to 3.1.7) bce482eff7b13b8edfef15f2a68f00129c6a707f' 2026-09-25 13:35:19,400 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:35:19,490 [ scc.git] DEBUG package-lock.json | 15 ++++++++------- 2026-09-25 13:35:19,490 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 7 deletions(-) 2026-09-25 13:35:19,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:35:19,673 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5bf4a3df9d457e59731fdbcc113c1da254f5d4f0' 2026-09-25 13:35:19,772 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:19,788 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 565 (Bump qs and body-parser) 5bf4a3df9d457e59731fdbcc113c1da254f5d4f0' 2026-09-25 13:35:20,078 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-25 13:35:20,165 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:35:20,250 [ scc.git] DEBUG package-lock.json | 96 +++++++++++++++++++++++++++++++++---------------------- 2026-09-25 13:35:20,250 [ scc.git] DEBUG 1 file changed, 58 insertions(+), 38 deletions(-) 2026-09-25 13:35:20,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:35:20,454 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...a0f64fab8b6ff36d8cc38e97fee618e2cd043626' 2026-09-25 13:35:20,564 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:20,580 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 566 (Bump js-yaml from 4.1.0 to 4.3.2) a0f64fab8b6ff36d8cc38e97fee618e2cd043626' 2026-09-25 13:35:20,859 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-25 13:35:20,948 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:35:21,038 [ scc.git] DEBUG package-lock.json | 70 ++++++++++++++++++++++++++++++++----------------------- 2026-09-25 13:35:21,038 [ scc.git] DEBUG 1 file changed, 41 insertions(+), 29 deletions(-) 2026-09-25 13:35:21,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:35:21,224 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38a260841feb643eaf6b5a098e1b248a6f0af57a' 2026-09-25 13:35:21,331 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:21,345 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 567 (Basic fix of prev/next shapes when shapes sorted) 38a260841feb643eaf6b5a098e1b248a6f0af57a' 2026-09-25 13:35:21,723 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:35:21,815 [ scc.git] DEBUG src/model/regions_info.js | 3 ++ 2026-09-25 13:35:21,815 [ scc.git] DEBUG src/regions/regions-edit.js | 103 +++++++++++++++++++++++++++++++++++++++++--- 2026-09-25 13:35:21,815 [ scc.git] DEBUG src/regions/regions-list.js | 2 + 2026-09-25 13:35:21,815 [ scc.git] DEBUG 3 files changed, 103 insertions(+), 5 deletions(-) 2026-09-25 13:35:22,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:35:22,021 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:35:22,159 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:35:22,159 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:22,174 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:35:22,293 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:35:22,440 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929eb884d0> has no local changes 2026-09-25 13:35:22,440 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Updating 7a798cee..6c554250 Previously merged: - PR 562 will-moore 'Keyboard select roi' - PR 563 will-moore 'Use POST data for imgRdef save' - PR 559 dependabot[bot] 'Bump js-yaml and mocha' - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' - PR 541 will-moore 'Only add channel to tile request string if active' - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' - PR 535 dependabot[bot] 'Bump tmp and eslint' - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' - PR 529 will-moore 'Image id and roi id initial params' - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' - PR 513 jburel 'Bump Python version' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 465 will-moore 'Save as Figure' - PR 517 will-moore 'Fix roi link permissions' - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 471 will-moore 'Z projection disabled tooltip' - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' - PR 565 dependabot[bot] 'Bump qs and body-parser' - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' Conflicting PRs (not included): - PR 532 will-moore 'Zarr layers' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:35:22,640 [ scc.git] DEBUG [detached HEAD 5e2ec712] merge master -Dorg -Ssuccess-only 2026-09-25 13:35:22,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:35:22,643 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:35:23,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2026-09-25 13:35:23,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98 HTTP/1.1" 200 None 2026-09-25 13:35:24,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98/comments HTTP/1.1" 200 None 2026-09-25 13:35:24,073 [ scc.repo] DEBUG # ... Include label: include 2026-09-25 13:35:24,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:25,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:35:25,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:26,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:35:26,189 [ scc.repo] DEBUG - PR 98 JoshuaFortriede 'use namespace with keys' 2026-09-25 13:35:26,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97 HTTP/1.1" 200 None 2026-09-25 13:35:27,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97/comments HTTP/1.1" 200 None 2026-09-25 13:35:27,235 [ scc.repo] DEBUG # ... Include label: include 2026-09-25 13:35:27,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:28,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:35:28,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:29,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/3854f1cfa0cbe79675dad16ad34fce109524eb28?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:35:29,268 [ scc.repo] DEBUG - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' 2026-09-25 13:35:29,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2026-09-25 13:35:30,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2026-09-25 13:35:30,270 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:35:30,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:31,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:35:32,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:35:32,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:33,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:35:33,025 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:35:33,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2026-09-25 13:35:34,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:34,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:35:35,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:35,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:35:35,605 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-25 13:35:36,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2026-09-25 13:35:36,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2026-09-25 13:35:36,632 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:35:36,632 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-09-25 13:35:36,633 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:35:36,633 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:36,659 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:35:36,681 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:35:36,682 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:35:36,709 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:35:36,777 [ scc.git] DEBUG Already up to date. 2026-09-25 13:35:36,777 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2026-09-25 13:35:37,293 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-09-25 13:35:37,293 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2026-09-25 13:35:37,326 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2026-09-25 13:35:37,770 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-09-25 13:35:37,771 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2026-09-25 13:35:37,796 [ scc.git] DEBUG Calling 'git fetch origin pull/97/head' 2026-09-25 13:35:38,435 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-09-25 13:35:38,435 [ scc.git] DEBUG * branch refs/pull/97/head -> FETCH_HEAD 2026-09-25 13:35:38,469 [ scc.git] DEBUG Calling 'git fetch origin pull/98/head' 2026-09-25 13:35:39,013 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-09-25 13:35:39,013 [ scc.git] DEBUG * branch refs/pull/98/head -> FETCH_HEAD 2026-09-25 13:35:39,037 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:35:39,037 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:35:39,037 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:39,050 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-09-25 13:35:39,086 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:39,103 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-09-25 13:35:39,302 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:35:39,360 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-25 13:35:39,361 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:35:39,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:35:39,546 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-09-25 13:35:39,574 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:39,588 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-09-25 13:35:39,762 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-09-25 13:35:39,762 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2026-09-25 13:35:39,786 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-25 13:35:39,788 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-25 13:35:39,811 [ scc.git] DEBUG Calling 'git reset --hard 3f7461d93f3ebe21f783abbc6b824c0923fb349a' 2026-09-25 13:35:39,953 [ scc.git] DEBUG HEAD is now at 3f7461d merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2026-09-25 13:35:40,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:35:40,336 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-09-25 13:35:40,360 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2026-09-25 13:35:40,379 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#87](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2026-09-25 13:35:40,390 [ scc.config] DEBUG Found github.token 2026-09-25 13:35:40,390 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2026-09-25 13:35:40,390 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3854f1cfa0cbe79675dad16ad34fce109524eb28' 2026-09-25 13:35:40,425 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:40,439 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 97 (BUG Fix: use HTML value to replace HTML) 3854f1cfa0cbe79675dad16ad34fce109524eb28' 2026-09-25 13:35:40,690 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:35:40,775 [ scc.git] DEBUG .../templates/webclient/data/includes/right_plugin.general.js.html | 4 +++- 2026-09-25 13:35:40,775 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 1 deletion(-) 2026-09-25 13:35:40,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:35:40,962 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fa070ad0afa0f3944fa2513d38db6da1f5bc783' 2026-09-25 13:35:41,002 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:41,015 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 98 (use namespace with keys) 1fa070ad0afa0f3944fa2513d38db6da1f5bc783' 2026-09-25 13:35:41,240 [ scc.git] DEBUG Auto-merging omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2026-09-25 13:35:41,341 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:35:41,436 [ scc.git] DEBUG .../webclient/data/includes/right_plugin.general.js.html | 11 ++++++++--- 2026-09-25 13:35:41,436 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 3 deletions(-) 2026-09-25 13:35:41,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:35:41,631 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:35:41,763 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:35:41,763 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:41,777 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:35:41,898 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:35:41,962 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929eb53450> has no local changes 2026-09-25 13:35:41,962 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) - PR 74 will-moore 'mapr extension of webclient' (exclude comment) Already up to date. Merged PRs: - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' - PR 98 JoshuaFortriede 'use namespace with keys' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:35:42,153 [ scc.git] DEBUG [detached HEAD 7f4e4ac] merge master -Dorg -Ssuccess-only 2026-09-25 13:35:42,155 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:35:42,155 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:35:42,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2026-09-25 13:35:43,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None 2026-09-25 13:35:43,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None 2026-09-25 13:35:44,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:44,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:35:45,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:45,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:35:45,796 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-09-25 13:35:46,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2026-09-25 13:35:46,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2026-09-25 13:35:47,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:47,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:35:48,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:48,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:35:48,881 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-09-25 13:35:49,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None 2026-09-25 13:35:49,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None 2026-09-25 13:35:50,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:51,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:35:51,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None 2026-09-25 13:35:52,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:35:52,074 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-09-25 13:35:52,074 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:35:52,074 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-09-25 13:35:52,075 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:35:52,075 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:52,094 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:35:52,116 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:35:52,116 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:35:52,154 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:35:52,473 [ scc.git] DEBUG Updating 3cd120c..6a653e4 2026-09-25 13:35:53,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/95 HTTP/1.1" 200 None 2026-09-25 13:35:53,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/94 HTTP/1.1" 200 None 2026-09-25 13:35:54,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None 2026-09-25 13:35:54,778 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head' 2026-09-25 13:35:55,472 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-09-25 13:35:55,472 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD 2026-09-25 13:35:55,502 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2026-09-25 13:35:56,303 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-09-25 13:35:56,303 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2026-09-25 13:35:56,328 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head' 2026-09-25 13:35:56,841 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-09-25 13:35:56,841 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD 2026-09-25 13:35:56,864 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:35:56,865 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:35:56,865 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:56,878 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-09-25 13:35:56,933 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:56,945 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-09-25 13:35:57,187 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py 2026-09-25 13:35:57,187 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py 2026-09-25 13:35:57,187 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-09-25 13:35:57,187 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-09-25 13:35:57,209 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-25 13:35:57,210 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-25 13:35:57,232 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-09-25 13:35:57,364 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation 2026-09-25 13:35:57,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:35:57,543 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-09-25 13:35:57,585 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-09-25 13:35:57,609 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' Conflicting PR. Removed from build [OMERO-plugins-push#87](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/cli.py - src/omero_metadata/populate.py --conflicts 2026-09-25 13:35:57,636 [ scc.config] DEBUG Found github.token 2026-09-25 13:35:57,636 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts. 2026-09-25 13:35:57,636 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2026-09-25 13:35:57,689 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:57,701 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2026-09-25 13:35:57,957 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-09-25 13:35:57,957 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-09-25 13:35:57,957 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2026-09-25 13:35:57,986 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-25 13:35:57,987 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-25 13:35:58,017 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-09-25 13:35:58,170 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation 2026-09-25 13:35:58,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:35:58,363 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 78e55539b68e351ed5ef202854718b49a37729a7' 2026-09-25 13:35:58,411 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-09-25 13:35:58,437 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#87](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/consoleText) for more details. Possible conflicts: - PR #55 kkoz 'Prevent users from creating columns with python keyword names' - src/omero_metadata/populate.py - Upstream changes - src/omero_metadata/populate.py --conflicts 2026-09-25 13:35:58,450 [ scc.config] DEBUG Found github.token 2026-09-25 13:35:58,450 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2026-09-25 13:35:58,450 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-09-25 13:35:58,493 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:58,507 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-09-25 13:35:58,719 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:35:58,782 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++- 2026-09-25 13:35:58,782 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-) 2026-09-25 13:35:58,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:35:58,969 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:35:59,098 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:35:59,098 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:35:59,116 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:35:59,231 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:35:59,289 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929eba6b10> has no local changes 2026-09-25 13:35:59,289 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..6a653e4 Previously merged: - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:35:59,416 [ scc.git] DEBUG [detached HEAD 8a042f9] merge master -Dorg -Ssuccess-only 2026-09-25 13:35:59,417 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:35:59,417 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:35:59,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2026-09-25 13:36:00,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2026-09-25 13:36:00,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:01,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:36:01,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:02,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:36:02,458 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-25 13:36:02,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2026-09-25 13:36:02,983 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:36:03,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:04,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:36:04,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:05,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:36:05,289 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-09-25 13:36:05,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2026-09-25 13:36:05,839 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:36:06,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:07,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:36:07,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:08,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:36:08,033 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-09-25 13:36:08,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2026-09-25 13:36:09,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2026-09-25 13:36:09,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2026-09-25 13:36:10,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2026-09-25 13:36:10,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2026-09-25 13:36:11,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2026-09-25 13:36:11,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2026-09-25 13:36:11,535 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:36:11,536 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-09-25 13:36:11,536 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:11,536 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:11,555 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:36:11,574 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:36:11,574 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:36:11,597 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:36:11,654 [ scc.git] DEBUG Already up to date. 2026-09-25 13:36:11,654 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2026-09-25 13:36:12,102 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-09-25 13:36:12,102 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2026-09-25 13:36:12,129 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2026-09-25 13:36:12,619 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-09-25 13:36:12,619 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2026-09-25 13:36:12,649 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2026-09-25 13:36:13,217 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-09-25 13:36:13,217 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2026-09-25 13:36:13,241 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:36:13,242 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:13,242 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:13,256 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2026-09-25 13:36:13,279 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:13,293 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2026-09-25 13:36:13,536 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:36:13,606 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2026-09-25 13:36:13,606 [ scc.git] DEBUG package.json | 2 +- 2026-09-25 13:36:13,606 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2026-09-25 13:36:13,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:36:13,803 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2026-09-25 13:36:13,838 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:13,853 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2026-09-25 13:36:14,066 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-25 13:36:14,066 [ scc.git] DEBUG Auto-merging package.json 2026-09-25 13:36:14,138 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:36:14,210 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2026-09-25 13:36:14,210 [ scc.git] DEBUG package.json | 2 +- 2026-09-25 13:36:14,210 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2026-09-25 13:36:14,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:36:14,395 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-09-25 13:36:14,439 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:14,454 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-09-25 13:36:14,676 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:36:14,744 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-25 13:36:14,745 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:36:14,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:36:14,936 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:36:15,064 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:15,064 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:15,079 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:36:15,203 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:36:15,278 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929eb87790> has no local changes 2026-09-25 13:36:15,278 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:36:15,423 [ scc.git] DEBUG [detached HEAD afd3a54] merge master -Dorg -Ssuccess-only 2026-09-25 13:36:15,425 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:36:15,426 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:36:15,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2026-09-25 13:36:16,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2026-09-25 13:36:16,241 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:36:16,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:17,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:36:18,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:36:18,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:19,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:36:19,388 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:36:19,388 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:36:19,388 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-09-25 13:36:19,389 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:19,390 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:19,412 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:36:19,434 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:36:19,434 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:36:19,460 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:36:19,523 [ scc.git] DEBUG Already up to date. 2026-09-25 13:36:19,524 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2026-09-25 13:36:20,129 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2026-09-25 13:36:20,129 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2026-09-25 13:36:20,152 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:36:20,153 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:20,153 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:20,168 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2026-09-25 13:36:20,190 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:20,204 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2026-09-25 13:36:20,407 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:36:20,491 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-25 13:36:20,491 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:36:20,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:36:20,696 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:36:20,823 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:20,823 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:20,837 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:36:20,966 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:36:21,031 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929fdcc510> has no local changes 2026-09-25 13:36:21,031 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:36:21,187 [ scc.git] DEBUG [detached HEAD da3705c] merge master -Dorg -Ssuccess-only 2026-09-25 13:36:21,189 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:36:21,189 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:36:21,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2026-09-25 13:36:22,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2026-09-25 13:36:22,028 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:36:22,028 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-09-25 13:36:22,029 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:22,030 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:22,050 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:36:22,068 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:36:22,068 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:36:22,105 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:36:22,365 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96 2026-09-25 13:36:23,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None 2026-09-25 13:36:23,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None 2026-09-25 13:36:23,934 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:36:23,934 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:23,934 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:23,952 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:36:24,077 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:24,077 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:24,091 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:36:24,208 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:36:24,269 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929ebbbe10> has no local changes 2026-09-25 13:36:24,269 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:36:24,426 [ scc.git] DEBUG [detached HEAD 953db7a] merge master -Dorg -Ssuccess-only 2026-09-25 13:36:24,428 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:36:24,428 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:36:24,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2026-09-25 13:36:25,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None 2026-09-25 13:36:25,326 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:36:25,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:26,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:36:27,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:36:27,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:28,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:36:28,107 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:36:28,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2026-09-25 13:36:29,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2026-09-25 13:36:29,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:30,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:36:30,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:31,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:36:31,271 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2026-09-25 13:36:31,271 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:36:31,271 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-09-25 13:36:31,272 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:31,272 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:31,294 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:36:31,316 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:36:31,316 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:36:31,339 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:36:31,408 [ scc.git] DEBUG Already up to date. 2026-09-25 13:36:31,408 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-09-25 13:36:32,140 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-09-25 13:36:32,140 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-09-25 13:36:32,166 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-09-25 13:36:32,683 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-09-25 13:36:32,683 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-09-25 13:36:32,707 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:36:32,707 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:32,707 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:32,724 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-09-25 13:36:32,764 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:32,781 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-09-25 13:36:33,107 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2026-09-25 13:36:33,107 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2026-09-25 13:36:33,107 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2026-09-25 13:36:33,107 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2026-09-25 13:36:33,107 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2026-09-25 13:36:33,107 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2026-09-25 13:36:33,107 [ scc.git] DEBUG Auto-merging setup.py 2026-09-25 13:36:33,107 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2026-09-25 13:36:33,146 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-25 13:36:33,147 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-25 13:36:33,188 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e' 2026-09-25 13:36:33,388 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build 2026-09-25 13:36:33,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:36:33,623 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-09-25 13:36:33,659 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e' 2026-09-25 13:36:33,683 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#87](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/urls.py - setup.py - omero_signup/views.py - omero_signup/signup_settings.py --conflicts 2026-09-25 13:36:33,697 [ scc.config] DEBUG Found github.token 2026-09-25 13:36:33,697 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2026-09-25 13:36:33,697 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-09-25 13:36:33,725 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:33,739 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-09-25 13:36:33,945 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:36:34,028 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-25 13:36:34,028 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:36:34,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:36:34,206 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:36:34,326 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:34,326 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:34,339 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:36:34,439 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:36:34,496 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929ebf5150> has no local changes 2026-09-25 13:36:34,496 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:36:34,648 [ scc.git] DEBUG [detached HEAD adfe3dd] merge master -Dorg -Ssuccess-only 2026-09-25 13:36:34,650 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:36:34,650 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:36:35,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2026-09-25 13:36:35,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2026-09-25 13:36:36,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2026-09-25 13:36:36,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None 2026-09-25 13:36:37,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:37,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:36:38,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:38,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:36:38,803 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-09-25 13:36:38,803 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:36:38,803 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-09-25 13:36:38,805 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:38,805 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:38,827 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:36:38,845 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:36:38,846 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:36:38,878 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:36:39,071 [ scc.git] DEBUG Updating cda3ec6..c8a0015 2026-09-25 13:36:39,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None 2026-09-25 13:36:40,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None 2026-09-25 13:36:41,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None 2026-09-25 13:36:41,740 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2026-09-25 13:36:42,384 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2026-09-25 13:36:42,384 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2026-09-25 13:36:42,409 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:36:42,409 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:42,409 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:42,426 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623' 2026-09-25 13:36:42,459 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:42,474 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623' 2026-09-25 13:36:42,686 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml 2026-09-25 13:36:42,756 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:36:42,837 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++ 2026-09-25 13:36:42,837 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++ 2026-09-25 13:36:42,837 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++ 2026-09-25 13:36:42,837 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++ 2026-09-25 13:36:42,837 [ scc.git] DEBUG ms/test | 2 ++ 2026-09-25 13:36:42,837 [ scc.git] DEBUG 5 files changed, 56 insertions(+) 2026-09-25 13:36:42,837 [ scc.git] DEBUG create mode 100644 ms/compose.yml 2026-09-25 13:36:42,838 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile 2026-09-25 13:36:42,838 [ scc.git] DEBUG create mode 100755 ms/test 2026-09-25 13:36:43,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:36:43,018 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:36:43,148 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:43,148 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:43,162 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:36:43,270 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:36:43,343 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929ec09450> has no local changes 2026-09-25 13:36:43,343 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:36:43,495 [ scc.git] DEBUG [detached HEAD 4d86259] merge master -Dorg -Ssuccess-only 2026-09-25 13:36:43,496 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:36:43,496 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:36:43,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2026-09-25 13:36:44,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2026-09-25 13:36:44,371 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:36:45,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:45,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:36:46,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:36:46,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:47,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:36:47,188 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:36:47,188 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:36:47,188 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-09-25 13:36:47,189 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:47,189 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:47,208 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:36:47,232 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:36:47,232 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:36:47,255 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:36:47,316 [ scc.git] DEBUG Already up to date. 2026-09-25 13:36:47,317 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-09-25 13:36:47,846 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2026-09-25 13:36:47,846 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-09-25 13:36:47,872 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:36:47,872 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:47,873 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:47,889 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-09-25 13:36:47,918 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:47,935 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-09-25 13:36:48,154 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:36:48,234 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-25 13:36:48,234 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:36:48,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:36:48,411 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:36:48,542 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:48,542 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:48,561 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:36:48,682 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:36:48,734 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929ec25d10> has no local changes 2026-09-25 13:36:48,734 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:36:48,872 [ scc.git] DEBUG [detached HEAD 891aa02] merge master -Dorg -Ssuccess-only 2026-09-25 13:36:48,874 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:36:48,874 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:36:49,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2026-09-25 13:36:49,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2026-09-25 13:36:49,731 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:36:50,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:50,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:36:51,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:36:52,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:52,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:36:52,574 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:36:52,574 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:36:52,574 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-09-25 13:36:52,576 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:52,576 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:52,595 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:36:52,615 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:36:52,615 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:36:52,646 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:36:52,857 [ scc.git] DEBUG Updating deab817..160d894 2026-09-25 13:36:53,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None 2026-09-25 13:36:53,445 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-09-25 13:36:53,922 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2026-09-25 13:36:53,922 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-09-25 13:36:53,957 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:36:53,957 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:53,957 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:53,977 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-09-25 13:36:54,004 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:54,018 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-09-25 13:36:54,223 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:36:54,309 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-25 13:36:54,309 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:36:54,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:36:54,498 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:36:54,629 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:36:54,629 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:36:54,644 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:36:54,762 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:36:54,813 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929fd6a490> has no local changes 2026-09-25 13:36:54,813 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:36:54,944 [ scc.git] DEBUG [detached HEAD 9db3408] merge master -Dorg -Ssuccess-only 2026-09-25 13:36:54,945 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:36:54,945 [ scc.git] INFO Overriding base-branch from master to main 2026-09-25 13:36:54,945 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:36:55,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2026-09-25 13:36:55,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2026-09-25 13:36:56,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2026-09-25 13:36:56,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:57,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:36:58,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:36:58,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None 2026-09-25 13:36:58,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:36:58,979 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2026-09-25 13:36:59,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2026-09-25 13:37:00,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2026-09-25 13:37:00,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2026-09-25 13:37:01,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None 2026-09-25 13:37:01,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:37:02,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None 2026-09-25 13:37:02,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:37:02,675 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-09-25 13:37:02,675 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:37:02,675 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-09-25 13:37:02,676 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:02,676 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:02,698 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2026-09-25 13:37:02,719 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:37:02,719 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2026-09-25 13:37:02,744 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2026-09-25 13:37:02,916 [ scc.git] DEBUG Updating 8f3c313..4e1e685 2026-09-25 13:37:03,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None 2026-09-25 13:37:04,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None 2026-09-25 13:37:04,374 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2026-09-25 13:37:05,042 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-09-25 13:37:05,042 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2026-09-25 13:37:05,069 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-09-25 13:37:05,863 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-09-25 13:37:05,863 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-09-25 13:37:05,888 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:37:05,888 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:05,888 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:05,904 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-09-25 13:37:05,940 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:05,955 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-09-25 13:37:06,173 [ scc.git] DEBUG Auto-merging README.rst 2026-09-25 13:37:06,173 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2026-09-25 13:37:06,173 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2026-09-25 13:37:06,173 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-09-25 13:37:06,196 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-25 13:37:06,198 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-25 13:37:06,234 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-09-25 13:37:06,376 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-09-25 13:37:06,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:06,561 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-09-25 13:37:06,592 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-09-25 13:37:06,613 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#87](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2026-09-25 13:37:06,625 [ scc.config] DEBUG Found github.token 2026-09-25 13:37:06,625 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2026-09-25 13:37:06,625 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-09-25 13:37:06,672 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:06,686 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-09-25 13:37:06,897 [ scc.git] DEBUG Auto-merging README.rst 2026-09-25 13:37:06,897 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-09-25 13:37:06,970 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:37:07,050 [ scc.git] DEBUG README.rst | 3 + 2026-09-25 13:37:07,050 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2026-09-25 13:37:07,050 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2026-09-25 13:37:07,050 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2026-09-25 13:37:07,050 [ scc.git] DEBUG setup.py | 5 +- 2026-09-25 13:37:07,050 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2026-09-25 13:37:07,050 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2026-09-25 13:37:07,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:07,266 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:37:07,397 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:07,397 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:07,412 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:37:07,533 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:37:07,610 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929ebff490> has no local changes 2026-09-25 13:37:07,610 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:37:07,750 [ scc.git] DEBUG [detached HEAD 85aabbd] merge master -Dorg -Ssuccess-only 2026-09-25 13:37:07,752 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:07,752 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:37:08,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2026-09-25 13:37:08,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2026-09-25 13:37:08,616 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:37:09,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None 2026-09-25 13:37:09,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:37:10,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:37:11,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None 2026-09-25 13:37:11,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:37:11,470 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:37:11,470 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:37:11,470 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-09-25 13:37:11,472 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:11,472 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:11,493 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:37:11,514 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:37:11,514 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:37:11,540 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:37:11,823 [ scc.git] DEBUG Already up to date. 2026-09-25 13:37:11,823 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2026-09-25 13:37:12,292 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2026-09-25 13:37:12,292 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2026-09-25 13:37:12,317 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:37:12,317 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:12,317 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:12,330 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-09-25 13:37:12,352 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:12,365 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-09-25 13:37:12,567 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:37:12,649 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-25 13:37:12,649 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:37:12,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:12,828 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:37:12,954 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:12,954 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:12,966 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:37:13,085 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:37:13,136 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929c1e1e90> has no local changes 2026-09-25 13:37:13,136 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:37:13,276 [ scc.git] DEBUG [detached HEAD d3fe1a2] merge master -Dorg -Ssuccess-only 2026-09-25 13:37:13,279 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:13,279 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:37:13,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2026-09-25 13:37:14,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2026-09-25 13:37:14,286 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-25 13:37:14,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None 2026-09-25 13:37:15,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:37:16,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:37:16,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None 2026-09-25 13:37:16,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:37:16,998 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:37:16,998 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:37:16,998 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-09-25 13:37:16,999 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:16,999 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:17,020 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:37:17,040 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:37:17,040 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:37:17,061 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:37:17,114 [ scc.git] DEBUG Already up to date. 2026-09-25 13:37:17,114 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2026-09-25 13:37:17,616 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2026-09-25 13:37:17,616 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2026-09-25 13:37:17,641 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:37:17,641 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:17,641 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:17,662 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-09-25 13:37:17,687 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:17,700 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-09-25 13:37:17,946 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:37:18,031 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-25 13:37:18,031 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-25 13:37:18,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:18,245 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:37:18,410 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:18,410 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:18,424 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:37:18,535 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:37:18,594 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929eb77850> has no local changes 2026-09-25 13:37:18,594 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:37:18,748 [ scc.git] DEBUG [detached HEAD 20f77ad] merge master -Dorg -Ssuccess-only 2026-09-25 13:37:18,750 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:18,750 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:37:18,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2 2026-09-25 13:37:18,974 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:37:18,974 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-09-25 13:37:18,975 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:18,975 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:18,997 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-25 13:37:19,020 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:37:19,021 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-25 13:37:19,044 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-25 13:37:19,110 [ scc.git] DEBUG Already up to date. 2026-09-25 13:37:19,110 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:37:19,110 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:19,110 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:19,132 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:37:19,266 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:19,266 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:19,282 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:37:19,412 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:37:19,522 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929ec03d10> has no local changes 2026-09-25 13:37:19,522 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:37:19,686 [ scc.git] DEBUG [detached HEAD dc33d26] merge master -Dorg -Ssuccess-only 2026-09-25 13:37:19,688 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:19,688 [ scc.git] INFO Overriding base-branch from master to develop 2026-09-25 13:37:19,688 [ scc.repo] DEBUG ## PRs found: 2026-09-25 13:37:19,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2026-09-25 13:37:20,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None 2026-09-25 13:37:21,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None 2026-09-25 13:37:21,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-25 13:37:22,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-25 13:37:22,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None 2026-09-25 13:37:23,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2 2026-09-25 13:37:23,117 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' 2026-09-25 13:37:23,117 [ scc.repo] DEBUG ## Branches found: 2026-09-25 13:37:23,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-09-25 13:37:23,118 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:23,118 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:23,139 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2026-09-25 13:37:23,161 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-25 13:37:23,161 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2026-09-25 13:37:23,193 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2026-09-25 13:37:23,498 [ scc.git] DEBUG Updating 4b4c755..5b4d768 2026-09-25 13:37:24,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None 2026-09-25 13:37:24,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None 2026-09-25 13:37:25,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None 2026-09-25 13:37:26,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None 2026-09-25 13:37:27,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None 2026-09-25 13:37:28,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None 2026-09-25 13:37:28,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None 2026-09-25 13:37:28,997 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head' 2026-09-25 13:37:29,582 [ scc.git] DEBUG From https://github.com/ome/scripts 2026-09-25 13:37:29,583 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD 2026-09-25 13:37:29,611 [ scc.git] DEBUG ## Unique users: [] 2026-09-25 13:37:29,611 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:29,611 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:29,626 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f' 2026-09-25 13:37:29,670 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:29,683 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f' 2026-09-25 13:37:29,964 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-25 13:37:30,047 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++-- 2026-09-25 13:37:30,047 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-) 2026-09-25 13:37:30,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:30,232 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-25 13:37:30,384 [ scc.git] DEBUG Get sha1 of %s 2026-09-25 13:37:30,384 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-25 13:37:30,399 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:37:30,508 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:37:30,588 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f929fcc9c90> has no local changes 2026-09-25 13:37:30,589 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:37:30,741 [ scc.git] DEBUG [detached HEAD b265dfa] merge master -Dorg -Ssuccess-only 2026-09-25 13:37:30,742 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:30,742 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-25 13:37:31,045 [ scc.config] DEBUG Found submodule.figure.url 2026-09-25 13:37:31,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:31,267 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2026-09-25 13:37:31,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:31,723 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2026-09-25 13:37:31,732 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2026-09-25 13:37:32,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:32,143 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2026-09-25 13:37:32,151 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2026-09-25 13:37:32,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:32,587 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2026-09-25 13:37:32,597 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2026-09-25 13:37:32,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:33,032 [ scc.config] DEBUG Found submodule.omero-figure.url 2026-09-25 13:37:33,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:33,498 [ scc.config] DEBUG Found submodule.omero-figure.branch 2026-09-25 13:37:33,508 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2026-09-25 13:37:33,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:33,924 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2026-09-25 13:37:33,932 [ scc.config] DEBUG Found submodule.omero-gallery.url 2026-09-25 13:37:34,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:34,387 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2026-09-25 13:37:34,397 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2026-09-25 13:37:34,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:34,827 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2026-09-25 13:37:34,837 [ scc.config] DEBUG Found submodule.omero-mapr.url 2026-09-25 13:37:35,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:35,255 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2026-09-25 13:37:35,262 [ scc.config] DEBUG Found submodule.omero-metadata.url 2026-09-25 13:37:35,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:35,709 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2026-09-25 13:37:35,717 [ scc.config] DEBUG Found submodule.omero-parade.url 2026-09-25 13:37:36,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:36,133 [ scc.config] DEBUG Found submodule.omero-parade.branch 2026-09-25 13:37:36,142 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2026-09-25 13:37:36,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:36,568 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2026-09-25 13:37:36,579 [ scc.config] DEBUG Found submodule.omero-rois.url 2026-09-25 13:37:36,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:37,003 [ scc.config] DEBUG Found submodule.omero-signup.url 2026-09-25 13:37:37,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:37,441 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2026-09-25 13:37:37,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:37,886 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2026-09-25 13:37:37,894 [ scc.config] DEBUG Found submodule.omero-upload.url 2026-09-25 13:37:38,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:38,336 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2026-09-25 13:37:38,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:38,780 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2026-09-25 13:37:39,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:39,250 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2026-09-25 13:37:39,260 [ scc.config] DEBUG Found submodule.omero-weberror.url 2026-09-25 13:37:39,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:39,662 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2026-09-25 13:37:39,670 [ scc.config] DEBUG Found submodule.omero-webtest.url 2026-09-25 13:37:40,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:40,109 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2026-09-25 13:37:40,118 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2026-09-25 13:37:40,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:40,540 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2026-09-25 13:37:40,550 [ scc.config] DEBUG Found submodule.scripts.url 2026-09-25 13:37:40,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-25 13:37:41,000 [ scc.config] DEBUG Found submodule.scripts.branch 2026-09-25 13:37:41,000 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-25 13:37:43,207 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f92a27212d0> has local changes 2026-09-25 13:37:43,207 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Repository: ome/figure Excluded PRs: - PR 12 will-moore 'Browser based export' (stage: draft) - PR 9 will-moore 'Save omezarr collection' (stage: draft) Updating 3935875..5ea7e20 Previously merged: - PR 17 Rdornier 'Do not crop rotated panel at export' - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' Merged PRs: - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' - PR 14 will-moore 'App served by omero env' - PR 19 Rdornier 'Fix rectangle crop' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..d5f88d8 Previously merged: - PR 193 dominikl 'Only parse import uris if stated' - PR 182 will-moore 'Revert "Remove support for Plate import"' - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' - PR 197 pwalczysko 'Fix pragma' - PR 196 will-moore 'Storage options only if needed' - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Repository: ome/omero-figure Updating 9cc36cde..3195c3df Previously merged: - PR 704 jburel 'Revert commit 49ae9c9' - PR 703 will-moore 'Readme remove rc' - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' - PR 692 will-moore 'colorbar lut background fix' - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' - PR 691 dependabot[bot] 'Bump esbuild and vite' - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' - PR 685 will-moore 'Fix static files links for release build' - PR 683 will-moore 'Add touch support for clicking on single panel' - PR 680 will-moore 'Use --pre install for export script in README' - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' - PR 666 will-moore 'Standalone app' - PR 676 dependabot[bot] 'Bump picomatch' - PR 669 will-moore 'Standalone python script' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 706 will-moore 'Figure repo migration' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Updating 7a798cee..6c554250 Previously merged: - PR 562 will-moore 'Keyboard select roi' - PR 563 will-moore 'Use POST data for imgRdef save' - PR 559 dependabot[bot] 'Bump js-yaml and mocha' - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' - PR 541 will-moore 'Only add channel to tile request string if active' - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' - PR 535 dependabot[bot] 'Bump tmp and eslint' - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' - PR 529 will-moore 'Image id and roi id initial params' - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' - PR 513 jburel 'Bump Python version' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 465 will-moore 'Save as Figure' - PR 517 will-moore 'Fix roi link permissions' - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 471 will-moore 'Z projection disabled tooltip' - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' - PR 565 dependabot[bot] 'Bump qs and body-parser' - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' Conflicting PRs (not included): - PR 532 will-moore 'Zarr layers' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) - PR 74 will-moore 'mapr extension of webclient' (exclude comment) Already up to date. Merged PRs: - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' - PR 98 JoshuaFortriede 'use namespace with keys' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..6a653e4 Previously merged: - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Repository: ome/scripts Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' Generated by OMERO-plugins-push#87 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/87/)' 2026-09-25 13:37:43,808 [ scc.git] DEBUG [detached HEAD aefc446] merge master -Dorg -Ssuccess-only 2026-09-25 13:37:43,808 [ scc.git] DEBUG 24 files changed, 46 insertions(+), 46 deletions(-) 2026-09-25 13:37:43,809 [ scc.merge] INFO Repository: ome/omero-plugins 2026-09-25 13:37:43,810 [ scc.merge] INFO Already up to date. 2026-09-25 13:37:43,810 [ scc.merge] INFO 2026-09-25 13:37:43,810 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-09-25 13:37:43,810 [ scc.merge] INFO 2026-09-25 13:37:43,810 [ scc.merge] INFO Repository: ome/figure 2026-09-25 13:37:43,810 [ scc.merge] INFO Excluded PRs: 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 12 will-moore 'Browser based export' (stage: draft) 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 9 will-moore 'Save omezarr collection' (stage: draft) 2026-09-25 13:37:43,810 [ scc.merge] INFO Updating 3935875..5ea7e20 2026-09-25 13:37:43,810 [ scc.merge] INFO Previously merged: 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 17 Rdornier 'Do not crop rotated panel at export' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' 2026-09-25 13:37:43,810 [ scc.merge] INFO 2026-09-25 13:37:43,810 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 14 will-moore 'App served by omero env' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 19 Rdornier 'Fix rectangle crop' 2026-09-25 13:37:43,810 [ scc.merge] INFO 2026-09-25 13:37:43,810 [ scc.merge] INFO Repository: ome/minimal-omero-client 2026-09-25 13:37:43,810 [ scc.merge] INFO Already up to date. 2026-09-25 13:37:43,810 [ scc.merge] INFO 2026-09-25 13:37:43,810 [ scc.merge] INFO 2026-09-25 13:37:43,810 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2026-09-25 13:37:43,810 [ scc.merge] INFO Excluded PRs: 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2026-09-25 13:37:43,810 [ scc.merge] INFO Already up to date. 2026-09-25 13:37:43,810 [ scc.merge] INFO 2026-09-25 13:37:43,810 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:37:43,810 [ scc.merge] INFO 2026-09-25 13:37:43,810 [ scc.merge] INFO Repository: ome/omero-cli-render 2026-09-25 13:37:43,810 [ scc.merge] INFO Excluded PRs: 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2026-09-25 13:37:43,810 [ scc.merge] INFO Updating ce6e13c..68b7303 2026-09-25 13:37:43,810 [ scc.merge] INFO Previously merged: 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2026-09-25 13:37:43,810 [ scc.merge] INFO 2026-09-25 13:37:43,810 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2026-09-25 13:37:43,810 [ scc.merge] INFO 2026-09-25 13:37:43,810 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2026-09-25 13:37:43,810 [ scc.merge] INFO Excluded PRs: 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2026-09-25 13:37:43,810 [ scc.merge] INFO Updating 11d3587..d5f88d8 2026-09-25 13:37:43,810 [ scc.merge] INFO Previously merged: 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 197 pwalczysko 'Fix pragma' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 186 jburel 'Create release from tag' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option' 2026-09-25 13:37:43,810 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-25 13:37:43,811 [ scc.merge] INFO 2026-09-25 13:37:43,811 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-09-25 13:37:43,811 [ scc.merge] INFO 2026-09-25 13:37:43,811 [ scc.merge] INFO Repository: ome/omero-figure 2026-09-25 13:37:43,811 [ scc.merge] INFO Updating 9cc36cde..3195c3df 2026-09-25 13:37:43,811 [ scc.merge] INFO Previously merged: 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 704 jburel 'Revert commit 49ae9c9' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 703 will-moore 'Readme remove rc' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 666 will-moore 'Standalone app' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 663 will-moore 'Zarr' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels ' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 650 jburel 'Bump Python version' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2026-09-25 13:37:43,811 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-25 13:37:43,812 [ scc.merge] INFO 2026-09-25 13:37:43,812 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 706 will-moore 'Figure repo migration' 2026-09-25 13:37:43,812 [ scc.merge] INFO 2026-09-25 13:37:43,812 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2026-09-25 13:37:43,812 [ scc.merge] INFO Already up to date. 2026-09-25 13:37:43,812 [ scc.merge] INFO 2026-09-25 13:37:43,812 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:37:43,812 [ scc.merge] INFO 2026-09-25 13:37:43,812 [ scc.merge] INFO Repository: ome/omero-gallery 2026-09-25 13:37:43,812 [ scc.merge] INFO Already up to date. 2026-09-25 13:37:43,812 [ scc.merge] INFO 2026-09-25 13:37:43,812 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-09-25 13:37:43,812 [ scc.merge] INFO 2026-09-25 13:37:43,812 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-09-25 13:37:43,812 [ scc.merge] INFO 2026-09-25 13:37:43,812 [ scc.merge] INFO Repository: ome/omero-iviewer 2026-09-25 13:37:43,812 [ scc.merge] INFO Excluded PRs: 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2026-09-25 13:37:43,812 [ scc.merge] INFO Updating 7a798cee..6c554250 2026-09-25 13:37:43,812 [ scc.merge] INFO Previously merged: 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 562 will-moore 'Keyboard select roi' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 563 will-moore 'Use POST data for imgRdef save' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 559 dependabot[bot] 'Bump js-yaml and mocha' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' 2026-09-25 13:37:43,812 [ scc.merge] INFO - PR 513 jburel 'Bump Python version' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 565 dependabot[bot] 'Bump qs and body-parser' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers' 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Repository: ome/omero-mapr 2026-09-25 13:37:43,813 [ scc.merge] INFO Excluded PRs: 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' (exclude comment) 2026-09-25 13:37:43,813 [ scc.merge] INFO Already up to date. 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 98 JoshuaFortriede 'use namespace with keys' 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Repository: ome/omero-metadata 2026-09-25 13:37:43,813 [ scc.merge] INFO Updating 3cd120c..6a653e4 2026-09-25 13:37:43,813 [ scc.merge] INFO Previously merged: 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Repository: ome/omero-parade 2026-09-25 13:37:43,813 [ scc.merge] INFO Excluded PRs: 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2026-09-25 13:37:43,813 [ scc.merge] INFO Already up to date. 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2026-09-25 13:37:43,813 [ scc.merge] INFO Already up to date. 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Repository: ome/omero-rois 2026-09-25 13:37:43,813 [ scc.merge] INFO Excluded PRs: 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-09-25 13:37:43,813 [ scc.merge] INFO Updating bdfeb5e..fc9ff96 2026-09-25 13:37:43,813 [ scc.merge] INFO Previously merged: 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' 2026-09-25 13:37:43,813 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions' 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO 2026-09-25 13:37:43,813 [ scc.merge] INFO Repository: ome/omero-signup 2026-09-25 13:37:43,814 [ scc.merge] INFO Already up to date. 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2026-09-25 13:37:43,814 [ scc.merge] INFO Excluded PRs: 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2026-09-25 13:37:43,814 [ scc.merge] INFO Updating cda3ec6..c8a0015 2026-09-25 13:37:43,814 [ scc.merge] INFO Previously merged: 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 82 jburel 'Upgrade python' 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container' 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Repository: ome/omero-upload 2026-09-25 13:37:43,814 [ scc.merge] INFO Already up to date. 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2026-09-25 13:37:43,814 [ scc.merge] INFO Updating deab817..160d894 2026-09-25 13:37:43,814 [ scc.merge] INFO Previously merged: 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 20 jburel 'Build' 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Repository: ome/omero-web-zarr 2026-09-25 13:37:43,814 [ scc.merge] INFO Excluded PRs: 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2026-09-25 13:37:43,814 [ scc.merge] INFO Updating 8f3c313..4e1e685 2026-09-25 13:37:43,814 [ scc.merge] INFO Previously merged: 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README' 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2026-09-25 13:37:43,814 [ scc.merge] INFO Already up to date. 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2026-09-25 13:37:43,814 [ scc.merge] INFO Already up to date. 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2026-09-25 13:37:43,814 [ scc.merge] INFO Already up to date. 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO 2026-09-25 13:37:43,814 [ scc.merge] INFO Repository: ome/scripts 2026-09-25 13:37:43,814 [ scc.merge] INFO Updating 4b4c755..5b4d768 2026-09-25 13:37:43,814 [ scc.merge] INFO Previously merged: 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 231 jburel 'Create Release ' 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label' 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix' 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2026-09-25 13:37:43,814 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2026-09-25 13:37:43,815 [ scc.merge] INFO 2026-09-25 13:37:43,815 [ scc.merge] INFO Merged PRs: 2026-09-25 13:37:43,815 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' 2026-09-25 13:37:43,815 [ scc.merge] INFO 2026-09-25 13:37:43,815 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-09-25 13:37:43,815 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:43,861 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-09-25 13:37:43,861 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:43,881 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:43,881 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-09-25 13:37:43,881 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:43,898 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:43,898 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-09-25 13:37:43,898 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:43,915 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:43,915 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-09-25 13:37:43,915 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:43,936 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:43,936 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-09-25 13:37:43,936 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:43,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:43,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-09-25 13:37:43,955 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:43,970 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:43,970 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-09-25 13:37:43,970 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:43,987 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:43,987 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-09-25 13:37:43,987 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,003 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,004 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-09-25 13:37:44,004 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,021 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,021 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-09-25 13:37:44,021 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,039 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,040 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-09-25 13:37:44,040 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,056 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,056 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-09-25 13:37:44,056 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,073 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,073 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-09-25 13:37:44,073 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,088 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,088 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-09-25 13:37:44,088 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,104 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,104 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-09-25 13:37:44,104 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,136 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,137 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-09-25 13:37:44,137 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-09-25 13:37:44,151 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,168 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,168 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-09-25 13:37:44,168 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,186 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,186 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-09-25 13:37:44,186 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,206 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,206 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-09-25 13:37:44,206 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-09-25 13:37:44,254 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,272 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,272 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-09-25 13:37:44,272 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-25 13:37:44,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-09-25 13:37:44,289 [ scc.git] DEBUG Calling 'git remote' 2026-09-25 13:37:44,306 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'figure' Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'figure' HEAD detached from 3935875 nothing to commit, working tree clean Entering 'minimal-omero-client' [detached HEAD 21317c1] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798cee nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD 4e2b0ca] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-09-25 13:38:56,725 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-09-25 13:39:06,944 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-09-25 13:39:09,652 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-09-25 13:39:15,131 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-09-25 13:40:19,908 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS