Started by upstream project "Trigger" build number 26 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/80042be2aab2f4c47851263660cdf7971582cd0b3548009ec2196c6f3069ef1a/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 84258d5f2eea775a37267d49c87b3698bcfa5d38 (refs/remotes/origin/master) Commit message: "Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378" > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 > git rev-list --no-walk 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 9 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.3-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.3 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-46.0.3-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.23-py3-none-any.whl.metadata (993 bytes) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached cryptography-46.0.3-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) Using cached idna-3.11-py3-none-any.whl (71 kB) Using cached certifi-2026.1.4-py3-none-any.whl (152 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-2.23-py3-none-any.whl (118 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2026.1.4 cffi-2.0.0 charset_normalizer-3.4.4 cryptography-46.0.3 future-1.0.0 idna-3.11 pycparser-2.23 pyjwt-2.10.1 pynacl-1.6.2 requests-2.32.5 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-01-05 00:37:02,025 [ scc.config] DEBUG Found github.token 2026-01-05 00:37:02,026 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-01-05 00:37:02,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:37:02,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:37:03,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-01-05 00:37:03,032 [ scc.gh] DEBUG 3618 remaining from 5000 (Reset at 00:01 2026-01-05 00:37:03,033 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:03,035 [ scc.git] DEBUG Check current status 2026-01-05 00:37:03,035 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:03,038 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-01-05 00:37:03,038 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:03,085 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-01-05 00:37:03,088 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-01-05 00:37:03,091 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-01-05 00:37:03,094 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-01-05 00:37:03,098 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-01-05 00:37:03,100 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-01-05 00:37:03,103 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-01-05 00:37:03,106 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2026-01-05 00:37:03,109 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-01-05 00:37:03,112 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-01-05 00:37:03,114 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-01-05 00:37:03,117 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-01-05 00:37:03,120 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-01-05 00:37:03,123 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-01-05 00:37:03,126 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-01-05 00:37:03,129 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-01-05 00:37:03,131 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-01-05 00:37:03,134 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-01-05 00:37:03,136 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-01-05 00:37:03,139 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-01-05 00:37:03,142 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-01-05 00:37:03,145 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-01-05 00:37:03,148 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:03,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-01-05 00:37:04,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:04,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:05,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:05,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:05,484 [ scc.git] DEBUG Resetting... 2026-01-05 00:37:05,484 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-01-05 00:37:05,492 [ scc.git] DEBUG HEAD is now at 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-01-05 00:37:05,492 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-01-05 00:37:05,591 [ scc.git] DEBUG Check current status 2026-01-05 00:37:05,591 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:05,593 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-01-05 00:37:05,593 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:05,637 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-01-05 00:37:05,639 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-01-05 00:37:05,642 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-01-05 00:37:05,645 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-01-05 00:37:05,648 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-01-05 00:37:05,651 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-01-05 00:37:05,654 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-01-05 00:37:05,657 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2026-01-05 00:37:05,660 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-01-05 00:37:05,663 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-01-05 00:37:05,665 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-01-05 00:37:05,668 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-01-05 00:37:05,671 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-01-05 00:37:05,673 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-01-05 00:37:05,676 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-01-05 00:37:05,679 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-01-05 00:37:05,681 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-01-05 00:37:05,684 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-01-05 00:37:05,686 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-01-05 00:37:05,689 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-01-05 00:37:05,691 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-01-05 00:37:05,694 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-01-05 00:37:05,695 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-01-05 00:37:05,695 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-01-05 00:37:05,695 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-01-05 00:37:05,695 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-01-05 00:37:05,695 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-01-05 00:37:05,695 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:37:06,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-01-05 00:37:06,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-01-05 00:37:06,504 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:37:06,504 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-01-05 00:37:06,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-01-05 00:37:06,988 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:37:06,988 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-01-05 00:37:07,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-01-05 00:37:07,484 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:37:07,484 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-01-05 00:37:07,484 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:37:07,484 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:37:07,484 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:37:07,486 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:37:07,489 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:37:07,489 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:37:07,491 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:37:07,494 [ scc.git] DEBUG Already up to date. 2026-01-05 00:37:07,494 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-01-05 00:37:07,765 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-01-05 00:37:07,765 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-01-05 00:37:07,770 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-01-05 00:37:08,023 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-01-05 00:37:08,023 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-01-05 00:37:08,027 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-01-05 00:37:08,276 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-01-05 00:37:08,276 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-01-05 00:37:08,280 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:37:08,280 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:37:08,280 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:37:08,282 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-01-05 00:37:08,285 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:37:08,287 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-01-05 00:37:08,301 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:37:08,303 [ scc.git] DEBUG scripts | 2 +- 2026-01-05 00:37:08,303 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:37:08,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:37:08,447 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-01-05 00:37:08,450 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:37:08,452 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-01-05 00:37:08,466 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:37:08,468 [ scc.git] DEBUG omero-figure | 2 +- 2026-01-05 00:37:08,469 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:37:08,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:37:08,947 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-01-05 00:37:08,950 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:37:08,952 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-01-05 00:37:08,967 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:37:08,969 [ scc.git] DEBUG omero-iviewer | 2 +- 2026-01-05 00:37:08,969 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:37:09,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:37:09,348 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:37:09,406 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-01-05 00:37:09,429 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-01-05 00:37:09,442 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-01-05 00:37:09,443 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:37:09,443 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:37:09,445 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:37:09,521 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7efd8794c210> has no local changes 2026-01-05 00:37:09,521 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:37:09,591 [ scc.git] DEBUG [detached HEAD 1e1d5db] merge master -Dorg -Snone 2026-01-05 00:37:09,591 [ scc.merge] INFO Repository: ome/omero-plugins 2026-01-05 00:37:09,592 [ scc.merge] INFO Already up to date. 2026-01-05 00:37:09,592 [ scc.merge] INFO 2026-01-05 00:37:09,592 [ scc.merge] INFO Merged PRs: 2026-01-05 00:37:09,592 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-01-05 00:37:09,592 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-01-05 00:37:09,592 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-01-05 00:37:09,592 [ scc.merge] INFO 2026-01-05 00:37:09,592 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-01-05 00:37:09,592 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8' Submodule path 'omero-cli-zarr': checked out '37ea7000309b4f8b87c5122c138fb59b17ecf86b' Submodule path 'omero-figure': checked out '88b01ef56d2140b716e7f7022a5e7bd3d4b2c654' Submodule path 'omero-iviewer': checked out '5e2de43ad401fb00690a79644056e0ac15fabfd5' Submodule path 'omero-metadata': checked out '55060a256e99567f21e64ff3c225d933fba1c501' Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368' Submodule path 'scripts': checked out '18a9a752ca35a4bbe40246e3c225c0fb224ce883' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2026-01-05 00:37:16,275 [ scc.config] DEBUG Found github.token 2026-01-05 00:37:16,277 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-01-05 00:37:16,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:37:17,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:37:17,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-01-05 00:37:17,420 [ scc.gh] DEBUG 3604 remaining from 5000 (Reset at 00:01 2026-01-05 00:37:17,421 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:17,423 [ scc.git] DEBUG Check current status 2026-01-05 00:37:17,423 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:17,426 [ scc.git] DEBUG 1e1d5db merge master -Dorg -Snone 2026-01-05 00:37:17,426 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:17,473 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-01-05 00:37:17,476 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-01-05 00:37:17,479 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303) 2026-01-05 00:37:17,482 [ scc.git] DEBUG +37ea7000309b4f8b87c5122c138fb59b17ecf86b omero-cli-zarr (v0.7.0rc1-2-g37ea700) 2026-01-05 00:37:17,491 [ scc.git] DEBUG +88b01ef56d2140b716e7f7022a5e7bd3d4b2c654 omero-figure (v7.2.1-347-g88b01ef5) 2026-01-05 00:37:17,494 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-01-05 00:37:17,497 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-01-05 00:37:17,500 [ scc.git] DEBUG +5e2de43ad401fb00690a79644056e0ac15fabfd5 omero-iviewer (v0.16.0-20-g5e2de43) 2026-01-05 00:37:17,503 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-01-05 00:37:17,505 [ scc.git] DEBUG +55060a256e99567f21e64ff3c225d933fba1c501 omero-metadata (v0.13.0-8-g55060a2) 2026-01-05 00:37:17,508 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-01-05 00:37:17,511 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-01-05 00:37:17,514 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-01-05 00:37:17,517 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-01-05 00:37:17,520 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015) 2026-01-05 00:37:17,522 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-01-05 00:37:17,525 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2026-01-05 00:37:17,528 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685) 2026-01-05 00:37:17,530 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-01-05 00:37:17,533 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-01-05 00:37:17,536 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-01-05 00:37:17,540 [ scc.git] DEBUG +18a9a752ca35a4bbe40246e3c225c0fb224ce883 scripts (v5.9.1-17-g18a9a75) 2026-01-05 00:37:17,543 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:17,543 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2026-01-05 00:37:17,544 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2026-01-05 00:37:17,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-01-05 00:37:18,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:18,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:19,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:19,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:19,757 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:19,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-01-05 00:37:19,828 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:19,830 [ scc.git] DEBUG Check current status 2026-01-05 00:37:19,830 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:19,832 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2026-01-05 00:37:19,832 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:19,872 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:20,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2026-01-05 00:37:20,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:21,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:21,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:22,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:22,077 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:22,114 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:22,114 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-01-05 00:37:22,114 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:22,116 [ scc.git] DEBUG Check current status 2026-01-05 00:37:22,116 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:22,119 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2026-01-05 00:37:22,119 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:22,157 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:22,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2026-01-05 00:37:23,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:23,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:23,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:24,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:24,465 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:24,502 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:24,503 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-01-05 00:37:24,504 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:24,506 [ scc.git] DEBUG Check current status 2026-01-05 00:37:24,506 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:24,508 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease 2026-01-05 00:37:24,508 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:24,546 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:24,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2026-01-05 00:37:25,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:25,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:26,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:26,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:26,704 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:26,742 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:26,742 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-01-05 00:37:26,742 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:26,744 [ scc.git] DEBUG Check current status 2026-01-05 00:37:26,744 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:26,747 [ scc.git] DEBUG 37ea700 Bump version: 0.7.0rc1 → 0.7.1.dev0 2026-01-05 00:37:26,747 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:26,786 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:27,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2026-01-05 00:37:27,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:28,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:28,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:29,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:29,109 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:29,145 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:29,146 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-01-05 00:37:29,146 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:29,148 [ scc.git] DEBUG Check current status 2026-01-05 00:37:29,148 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:29,150 [ scc.git] DEBUG 88b01ef5 Merge pull request #637 from Rdornier/fix-scalebar-position 2026-01-05 00:37:29,150 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:29,188 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:29,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2026-01-05 00:37:30,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:30,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:30,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:31,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:31,529 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:31,567 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:31,567 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-01-05 00:37:31,567 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:31,569 [ scc.git] DEBUG Check current status 2026-01-05 00:37:31,569 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:31,572 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2026-01-05 00:37:31,572 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:31,610 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:32,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2026-01-05 00:37:32,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:33,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:33,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:34,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:34,026 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:34,063 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:34,064 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-01-05 00:37:34,064 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:34,066 [ scc.git] DEBUG Check current status 2026-01-05 00:37:34,066 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:34,068 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2026-01-05 00:37:34,068 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:34,106 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:34,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2026-01-05 00:37:35,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:35,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:35,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:36,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:36,290 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:36,329 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:36,330 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-01-05 00:37:36,330 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:36,332 [ scc.git] DEBUG Check current status 2026-01-05 00:37:36,332 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:36,334 [ scc.git] DEBUG 5e2de43 Merge pull request #510 from joshmoore/issue-509 2026-01-05 00:37:36,334 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:36,372 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:36,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2026-01-05 00:37:37,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:37,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:38,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:38,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:38,548 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:38,587 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:38,587 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-01-05 00:37:38,587 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:38,589 [ scc.git] DEBUG Check current status 2026-01-05 00:37:38,589 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:38,591 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2026-01-05 00:37:38,592 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:38,629 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:39,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2026-01-05 00:37:39,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:39,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:40,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:40,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:40,747 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:40,785 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:40,785 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-01-05 00:37:40,785 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:40,787 [ scc.git] DEBUG Check current status 2026-01-05 00:37:40,787 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:40,789 [ scc.git] DEBUG 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-01-05 00:37:40,790 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:40,827 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:41,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2026-01-05 00:37:41,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:42,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:42,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:43,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:43,013 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:43,050 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:43,050 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-01-05 00:37:43,051 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:43,053 [ scc.git] DEBUG Check current status 2026-01-05 00:37:43,053 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:43,055 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2026-01-05 00:37:43,055 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:43,093 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:43,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2026-01-05 00:37:44,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:44,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:44,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:45,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:45,302 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:45,340 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:45,340 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-01-05 00:37:45,340 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:45,342 [ scc.git] DEBUG Check current status 2026-01-05 00:37:45,342 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:45,344 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2026-01-05 00:37:45,345 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:45,383 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:45,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2026-01-05 00:37:46,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:46,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:47,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:47,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:47,485 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:47,522 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:47,523 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-01-05 00:37:47,523 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:47,525 [ scc.git] DEBUG Check current status 2026-01-05 00:37:47,525 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:47,527 [ scc.git] DEBUG bdfeb5e bump sphinx version 2026-01-05 00:37:47,527 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:47,565 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:48,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2026-01-05 00:37:48,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:49,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:49,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:49,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:49,928 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:49,964 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:49,964 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-01-05 00:37:49,964 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:49,966 [ scc.git] DEBUG Check current status 2026-01-05 00:37:49,966 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:49,969 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build 2026-01-05 00:37:49,969 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:50,007 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:50,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2026-01-05 00:37:50,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:51,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:51,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:52,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:52,139 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:52,175 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:52,176 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-01-05 00:37:52,176 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:52,178 [ scc.git] DEBUG Check current status 2026-01-05 00:37:52,178 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:52,180 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme 2026-01-05 00:37:52,180 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:52,217 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:52,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-01-05 00:37:52,578 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-01-05 00:37:52,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2026-01-05 00:37:53,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:53,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:54,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:54,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:54,590 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:54,627 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:54,627 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-01-05 00:37:54,627 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:54,629 [ scc.git] DEBUG Check current status 2026-01-05 00:37:54,629 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:54,631 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2026-01-05 00:37:54,632 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:54,669 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:55,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2026-01-05 00:37:55,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:56,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:56,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:56,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:56,890 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:56,926 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:56,926 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-01-05 00:37:56,927 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:56,928 [ scc.git] DEBUG Check current status 2026-01-05 00:37:56,929 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:56,931 [ scc.git] DEBUG 160d894 Fix display of code 2026-01-05 00:37:56,931 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:56,969 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:57,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2026-01-05 00:37:57,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:37:58,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:37:58,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:37:59,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:37:59,138 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:37:59,174 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:37:59,175 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-01-05 00:37:59,175 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:37:59,177 [ scc.git] DEBUG Check current status 2026-01-05 00:37:59,177 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:37:59,179 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-01-05 00:37:59,179 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:37:59,217 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:37:59,217 [ scc.git] DEBUG Repository configuration: base-branch: main 2026-01-05 00:37:59,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2026-01-05 00:38:00,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:38:00,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:38:01,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:38:01,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:38:01,461 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:38:01,498 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:38:01,498 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-01-05 00:38:01,498 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:38:01,500 [ scc.git] DEBUG Check current status 2026-01-05 00:38:01,501 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:38:01,503 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2026-01-05 00:38:01,503 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:38:01,541 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:38:01,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-01-05 00:38:01,876 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-01-05 00:38:02,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2026-01-05 00:38:02,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:38:03,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:38:03,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:38:03,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:38:03,869 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:38:03,906 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:38:03,906 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-01-05 00:38:03,906 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:38:03,908 [ scc.git] DEBUG Check current status 2026-01-05 00:38:03,908 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:38:03,911 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2026-01-05 00:38:03,911 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:38:03,948 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:38:04,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-01-05 00:38:04,299 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-01-05 00:38:04,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2026-01-05 00:38:05,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:38:05,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:38:06,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:38:06,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:38:06,512 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:38:06,548 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:38:06,549 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-01-05 00:38:06,549 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:38:06,551 [ scc.git] DEBUG Check current status 2026-01-05 00:38:06,551 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:38:06,553 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2026-01-05 00:38:06,553 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:38:06,591 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:38:07,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2026-01-05 00:38:07,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:38:07,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:38:08,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:38:08,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:38:08,768 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:38:08,807 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:38:08,808 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-01-05 00:38:08,808 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-05 00:38:08,810 [ scc.git] DEBUG Check current status 2026-01-05 00:38:08,810 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:38:08,812 [ scc.git] DEBUG 18a9a75 Merge pull request #229 from Rdornier/split-view-user-label 2026-01-05 00:38:08,813 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:38:08,853 [ scc.config] DEBUG Found remote.origin.url 2026-01-05 00:38:08,853 [ scc.git] DEBUG Repository configuration: base-branch: develop 2026-01-05 00:38:09,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-01-05 00:38:09,194 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-01-05 00:38:09,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2026-01-05 00:38:10,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-05 00:38:10,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-05 00:38:10,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-05 00:38:11,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-05 00:38:11,369 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:38:11,407 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:38:11,407 [ scc.git] DEBUG Resetting... 2026-01-05 00:38:11,407 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-01-05 00:38:11,414 [ scc.git] DEBUG HEAD is now at 1e1d5db merge master -Dorg -Snone 2026-01-05 00:38:11,414 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-01-05 00:38:11,465 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264' 2026-01-05 00:38:11,479 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2026-01-05 00:38:11,506 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-01-05 00:38:11,524 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-01-05 00:38:11,537 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2026-01-05 00:38:11,559 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73' 2026-01-05 00:38:11,573 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2026-01-05 00:38:11,583 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2026-01-05 00:38:11,606 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-01-05 00:38:11,609 [ scc.git] DEBUG Check current status 2026-01-05 00:38:11,609 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-05 00:38:11,612 [ scc.git] DEBUG 1e1d5db merge master -Dorg -Snone 2026-01-05 00:38:11,612 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-05 00:38:11,655 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-01-05 00:38:11,657 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-01-05 00:38:11,660 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-01-05 00:38:11,663 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-01-05 00:38:11,666 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2026-01-05 00:38:11,668 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-01-05 00:38:11,671 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-01-05 00:38:11,674 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798ce) 2026-01-05 00:38:11,676 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-01-05 00:38:11,679 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-01-05 00:38:11,682 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-01-05 00:38:11,684 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-01-05 00:38:11,687 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-01-05 00:38:11,690 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-01-05 00:38:11,692 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-01-05 00:38:11,695 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-01-05 00:38:11,697 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-01-05 00:38:11,700 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-01-05 00:38:11,703 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-01-05 00:38:11,705 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-01-05 00:38:11,708 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-01-05 00:38:11,711 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2026-01-05 00:38:11,711 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-01-05 00:38:11,712 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-01-05 00:38:11,712 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-01-05 00:38:11,712 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-01-05 00:38:11,712 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-01-05 00:38:11,712 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-01-05 00:38:11,712 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:38:12,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-01-05 00:38:12,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-01-05 00:38:12,521 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:38:13,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2026-01-05 00:38:13,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:14,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2026-01-05 00:38:14,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:38:14,504 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-01-05 00:38:14,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-01-05 00:38:15,000 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:38:15,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2026-01-05 00:38:15,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:16,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2026-01-05 00:38:16,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:38:16,886 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-01-05 00:38:17,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-01-05 00:38:17,371 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:38:17,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2026-01-05 00:38:18,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:18,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2026-01-05 00:38:19,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:38:19,356 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-01-05 00:38:19,356 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:38:19,356 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:38:19,356 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:19,359 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:38:19,361 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:38:19,361 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:38:19,364 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:38:19,367 [ scc.git] DEBUG Already up to date. 2026-01-05 00:38:19,367 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-01-05 00:38:19,641 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-01-05 00:38:19,641 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-01-05 00:38:19,644 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-01-05 00:38:19,898 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-01-05 00:38:19,898 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-01-05 00:38:19,903 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-01-05 00:38:20,151 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-01-05 00:38:20,151 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-01-05 00:38:20,155 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:38:20,155 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:38:20,155 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:20,157 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-01-05 00:38:20,159 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:20,161 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-01-05 00:38:20,164 [ scc.git] DEBUG Already up to date. 2026-01-05 00:38:20,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:38:20,318 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-01-05 00:38:20,320 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:20,322 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-01-05 00:38:20,324 [ scc.git] DEBUG Already up to date. 2026-01-05 00:38:20,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:38:20,722 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-01-05 00:38:20,724 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:20,726 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-01-05 00:38:20,729 [ scc.git] DEBUG Already up to date. 2026-01-05 00:38:21,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:38:21,123 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:38:21,171 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:38:21,171 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:21,174 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:38:21,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2026-01-05 00:38:21,543 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:38:21,543 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-01-05 00:38:21,543 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:38:21,543 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:21,545 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:38:21,547 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:38:21,547 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:38:21,550 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:38:21,553 [ scc.git] DEBUG Already up to date. 2026-01-05 00:38:21,553 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:38:21,553 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:38:21,553 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:21,555 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:38:21,591 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:38:21,591 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:21,593 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:38:21,629 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:38:21,632 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c058b010> has no local changes 2026-01-05 00:38:21,632 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:38:21,637 [ scc.git] DEBUG [detached HEAD 9b62209] merge master -Dorg -Ssuccess-only 2026-01-05 00:38:21,638 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:38:21,638 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:38:22,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2026-01-05 00:38:22,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2026-01-05 00:38:22,654 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:38:23,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2026-01-05 00:38:23,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:24,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:38:24,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2026-01-05 00:38:25,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:38:25,384 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:38:25,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2026-01-05 00:38:26,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2026-01-05 00:38:26,416 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:38:26,416 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-01-05 00:38:26,416 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:38:26,416 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:26,418 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:38:26,421 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:38:26,421 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:38:26,423 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:38:26,426 [ scc.git] DEBUG Already up to date. 2026-01-05 00:38:26,426 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2026-01-05 00:38:26,697 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2026-01-05 00:38:26,697 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2026-01-05 00:38:26,701 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:38:26,701 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:38:26,701 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:26,703 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-01-05 00:38:26,706 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:26,708 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-01-05 00:38:26,714 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:38:26,717 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-05 00:38:26,717 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:38:26,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:38:26,860 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:38:26,897 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:38:26,897 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:26,899 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:38:26,934 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:38:26,937 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c0672d90> has no local changes 2026-01-05 00:38:26,937 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:38:26,943 [ scc.git] DEBUG [detached HEAD 665d212] merge master -Dorg -Ssuccess-only 2026-01-05 00:38:26,943 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:38:26,943 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:38:27,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2026-01-05 00:38:27,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2026-01-05 00:38:28,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2026-01-05 00:38:28,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99 HTTP/1.1" 200 None 2026-01-05 00:38:29,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:29,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:38:30,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99 HTTP/1.1" 200 None 2026-01-05 00:38:30,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:38:30,949 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2026-01-05 00:38:31,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2026-01-05 00:38:31,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2026-01-05 00:38:31,882 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:38:31,882 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-01-05 00:38:31,882 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:38:31,882 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:31,884 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:38:31,886 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:38:31,886 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:38:31,889 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:38:31,896 [ scc.git] DEBUG Updating ce6e13c..68b7303 2026-01-05 00:38:32,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None 2026-01-05 00:38:33,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None 2026-01-05 00:38:34,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None 2026-01-05 00:38:34,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None 2026-01-05 00:38:34,652 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2026-01-05 00:38:34,917 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2026-01-05 00:38:34,917 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2026-01-05 00:38:34,922 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:38:34,922 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:38:34,922 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:34,924 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-01-05 00:38:34,927 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:34,929 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-01-05 00:38:34,938 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2026-01-05 00:38:34,939 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:38:34,942 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++-------------------- 2026-01-05 00:38:34,942 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-) 2026-01-05 00:38:35,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:38:35,083 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:38:35,120 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:38:35,120 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:38:35,122 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:38:35,159 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:38:35,162 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c0670310> has no local changes 2026-01-05 00:38:35,162 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:38:35,168 [ scc.git] DEBUG [detached HEAD f36d9fd] merge master -Dorg -Ssuccess-only 2026-01-05 00:38:35,168 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:38:35,168 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:38:35,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2026-01-05 00:38:36,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/186 HTTP/1.1" 200 None 2026-01-05 00:38:36,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2 HTTP/1.1" 200 None 2026-01-05 00:38:37,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:37,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:38:38,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2 HTTP/1.1" 200 None 2026-01-05 00:38:38,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2?per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:39,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2 HTTP/1.1" 200 None 2026-01-05 00:38:39,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2/status HTTP/1.1" 200 None 2026-01-05 00:38:39,508 [ scc.repo] DEBUG - PR 186 jburel 'Create release from tag' 2026-01-05 00:38:39,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182 HTTP/1.1" 200 None 2026-01-05 00:38:40,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182/comments HTTP/1.1" 200 None 2026-01-05 00:38:40,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2026-01-05 00:38:41,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:42,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:38:42,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2026-01-05 00:38:42,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac?per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:43,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2026-01-05 00:38:43,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/status HTTP/1.1" 200 None 2026-01-05 00:38:43,875 [ scc.repo] DEBUG - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-01-05 00:38:44,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181 HTTP/1.1" 200 None 2026-01-05 00:38:44,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181/comments HTTP/1.1" 200 None 2026-01-05 00:38:45,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d HTTP/1.1" 200 None 2026-01-05 00:38:45,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:46,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:38:46,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d HTTP/1.1" 200 None 2026-01-05 00:38:47,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/b1ec9c408dd417886a980e3368c0d82bfefe491d?per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:47,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d HTTP/1.1" 200 None 2026-01-05 00:38:48,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d/status HTTP/1.1" 200 None 2026-01-05 00:38:48,328 [ scc.repo] DEBUG - PR 181 will-moore 'Add labels support for import' 2026-01-05 00:38:48,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2026-01-05 00:38:49,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2026-01-05 00:38:49,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2026-01-05 00:38:50,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:50,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:38:51,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2026-01-05 00:38:51,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/bb180dbb97ddc67cd2cf655d56058ba7da765769?per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:52,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2026-01-05 00:38:52,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/status HTTP/1.1" 200 None 2026-01-05 00:38:52,505 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-01-05 00:38:53,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2026-01-05 00:38:53,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2026-01-05 00:38:54,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-01-05 00:38:54,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:54,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:38:55,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-01-05 00:38:55,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:56,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-01-05 00:38:56,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None 2026-01-05 00:38:56,848 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells' 2026-01-05 00:38:57,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172 HTTP/1.1" 200 None 2026-01-05 00:38:57,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172/comments HTTP/1.1" 200 None 2026-01-05 00:38:58,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/34b94cfddfc81989bb9e3fcd54cfded2ae58cf9f HTTP/1.1" 200 None 2026-01-05 00:38:58,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/34b94cfddfc81989bb9e3fcd54cfded2ae58cf9f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:38:59,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/34b94cfddfc81989bb9e3fcd54cfded2ae58cf9f/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:38:59,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/170 HTTP/1.1" 200 None 2026-01-05 00:39:00,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/169 HTTP/1.1" 200 None 2026-01-05 00:39:00,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167 HTTP/1.1" 200 None 2026-01-05 00:39:01,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167/comments HTTP/1.1" 200 None 2026-01-05 00:39:01,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2026-01-05 00:39:02,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2026-01-05 00:39:02,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2026-01-05 00:39:03,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2026-01-05 00:39:03,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2026-01-05 00:39:03,822 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:39:03,822 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-01-05 00:39:03,822 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:39:03,822 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:03,825 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:39:03,827 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:39:03,827 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:39:03,830 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:39:03,841 [ scc.git] DEBUG Updating 11d3587..37ea700 2026-01-05 00:39:04,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None 2026-01-05 00:39:05,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None 2026-01-05 00:39:05,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None 2026-01-05 00:39:06,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None 2026-01-05 00:39:07,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None 2026-01-05 00:39:08,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None 2026-01-05 00:39:08,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None 2026-01-05 00:39:09,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None 2026-01-05 00:39:09,468 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head' 2026-01-05 00:39:09,731 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-01-05 00:39:09,731 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD 2026-01-05 00:39:09,734 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2026-01-05 00:39:09,986 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-01-05 00:39:09,986 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2026-01-05 00:39:09,990 [ scc.git] DEBUG Calling 'git fetch origin pull/181/head' 2026-01-05 00:39:10,241 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-01-05 00:39:10,241 [ scc.git] DEBUG * branch refs/pull/181/head -> FETCH_HEAD 2026-01-05 00:39:10,246 [ scc.git] DEBUG Calling 'git fetch origin pull/182/head' 2026-01-05 00:39:10,502 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-01-05 00:39:10,502 [ scc.git] DEBUG * branch refs/pull/182/head -> FETCH_HEAD 2026-01-05 00:39:10,505 [ scc.git] DEBUG Calling 'git fetch origin pull/186/head' 2026-01-05 00:39:10,759 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-01-05 00:39:10,759 [ scc.git] DEBUG * branch refs/pull/186/head -> FETCH_HEAD 2026-01-05 00:39:10,763 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:39:10,763 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:39:10,763 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:10,765 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-01-05 00:39:10,768 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:10,770 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-01-05 00:39:10,779 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:39:10,783 [ scc.git] DEBUG README.rst | 14 ++ 2026-01-05 00:39:10,783 [ scc.git] DEBUG src/omero_zarr/cli.py | 66 +++++---- 2026-01-05 00:39:10,783 [ scc.git] DEBUG src/omero_zarr/kvp_tables.py | 82 +++++++++++ 2026-01-05 00:39:10,783 [ scc.git] DEBUG src/omero_zarr/masks.py | 46 ++++-- 2026-01-05 00:39:10,783 [ scc.git] DEBUG src/omero_zarr/raw_pixels.py | 51 +++++-- 2026-01-05 00:39:10,783 [ scc.git] DEBUG src/omero_zarr/util.py | 49 ++++++- 2026-01-05 00:39:10,783 [ scc.git] DEBUG test/integration/clitest/test_export.py | 251 +++++++++++++++++++++++--------- 2026-01-05 00:39:10,783 [ scc.git] DEBUG 7 files changed, 443 insertions(+), 116 deletions(-) 2026-01-05 00:39:10,783 [ scc.git] DEBUG create mode 100644 src/omero_zarr/kvp_tables.py 2026-01-05 00:39:10,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:39:10,930 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bb180dbb97ddc67cd2cf655d56058ba7da765769' 2026-01-05 00:39:10,933 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:10,935 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) bb180dbb97ddc67cd2cf655d56058ba7da765769' 2026-01-05 00:39:10,944 [ scc.git] DEBUG Auto-merging CHANGELOG.md 2026-01-05 00:39:10,944 [ scc.git] DEBUG CONFLICT (content): Merge conflict in CHANGELOG.md 2026-01-05 00:39:10,944 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-01-05 00:39:10,944 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-01-05 00:39:10,944 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-01-05 00:39:10,944 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-01-05 00:39:10,944 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-05 00:39:10,944 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-05 00:39:10,947 [ scc.git] DEBUG Calling 'git reset --hard f8e767f8e858f7981ee9abcb4a5d0e25ffc970c6' 2026-01-05 00:39:10,952 [ scc.git] DEBUG HEAD is now at f8e767f merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) 2026-01-05 00:39:11,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:39:11,313 [ scc.git] DEBUG Calling 'git merge-base 37ea7000309b4f8b87c5122c138fb59b17ecf86b bb180dbb97ddc67cd2cf655d56058ba7da765769' 2026-01-05 00:39:11,316 [ scc.git] DEBUG Calling 'git diff --name-only f7eea7cd6c149e1c5b2e4648753ac0a1f8a65dfb..37ea7000309b4f8b87c5122c138fb59b17ecf86b' 2026-01-05 00:39:11,318 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Conflicting PR. Removed from build [OMERO-plugins-push#9](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/consoleText) for more details. Possible conflicts: - PR #174 will-moore 'Skip wells' - test/integration/clitest/test_export.py - src/omero_zarr/masks.py - Upstream changes - CHANGELOG.md --conflicts 2026-01-05 00:39:11,320 [ scc.config] DEBUG Found github.token 2026-01-05 00:39:11,320 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts. 2026-01-05 00:39:11,320 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b1ec9c408dd417886a980e3368c0d82bfefe491d' 2026-01-05 00:39:11,323 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:11,325 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 181 (Add labels support for import) b1ec9c408dd417886a980e3368c0d82bfefe491d' 2026-01-05 00:39:11,333 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-01-05 00:39:11,334 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:39:11,337 [ scc.git] DEBUG src/omero_zarr/cli.py | 4 + 2026-01-05 00:39:11,337 [ scc.git] DEBUG src/omero_zarr/import_labels.py | 196 ++++++++++++++++++++++++++++++++ 2026-01-05 00:39:11,337 [ scc.git] DEBUG src/omero_zarr/zarr_import.py | 7 ++ 2026-01-05 00:39:11,337 [ scc.git] DEBUG test/integration/clitest/test_import.py | 19 ++++ 2026-01-05 00:39:11,337 [ scc.git] DEBUG 4 files changed, 226 insertions(+) 2026-01-05 00:39:11,337 [ scc.git] DEBUG create mode 100644 src/omero_zarr/import_labels.py 2026-01-05 00:39:11,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:39:11,726 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2026-01-05 00:39:11,729 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:11,730 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 182 (Revert "Remove support for Plate import") cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2026-01-05 00:39:11,739 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-01-05 00:39:11,739 [ scc.git] DEBUG Auto-merging src/omero_zarr/import_labels.py 2026-01-05 00:39:11,739 [ scc.git] DEBUG CONFLICT (add/add): Merge conflict in src/omero_zarr/import_labels.py 2026-01-05 00:39:11,739 [ scc.git] DEBUG Auto-merging src/omero_zarr/zarr_import.py 2026-01-05 00:39:11,739 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-05 00:39:11,739 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-05 00:39:11,742 [ scc.git] DEBUG Calling 'git reset --hard aa037c26ce6f2eec149d0a8a47f906f51f3af8c1' 2026-01-05 00:39:11,746 [ scc.git] DEBUG HEAD is now at aa037c2 merge master -Dorg -Ssuccess-only: PR 181 (Add labels support for import) 2026-01-05 00:39:12,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:39:12,114 [ scc.git] DEBUG Calling 'git merge-base 37ea7000309b4f8b87c5122c138fb59b17ecf86b cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2026-01-05 00:39:12,117 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..37ea7000309b4f8b87c5122c138fb59b17ecf86b' 2026-01-05 00:39:12,119 [ scc.git] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' Conflicting PR. Removed from build [OMERO-plugins-push#9](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/consoleText) for more details. Possible conflicts: - PR #181 will-moore 'Add labels support for import' - src/omero_zarr/import_labels.py --conflicts 2026-01-05 00:39:12,121 [ scc.config] DEBUG Found github.token 2026-01-05 00:39:12,121 [ scc.git] DEBUG Not adding comment to issue #182, already --conflicts. 2026-01-05 00:39:12,121 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2' 2026-01-05 00:39:12,124 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:12,127 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 186 (Create release from tag) e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2' 2026-01-05 00:39:12,134 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:39:12,136 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 7 ++++++- 2026-01-05 00:39:12,136 [ scc.git] DEBUG CHANGELOG.md | 41 -------------------------------------- 2026-01-05 00:39:12,136 [ scc.git] DEBUG 2 files changed, 6 insertions(+), 42 deletions(-) 2026-01-05 00:39:12,136 [ scc.git] DEBUG delete mode 100644 CHANGELOG.md 2026-01-05 00:39:12,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:39:12,523 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:39:12,560 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:39:12,560 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:12,562 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:39:12,597 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:39:12,600 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c058d250> has no local changes 2026-01-05 00:39:12,600 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..37ea700 Previously merged: - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 174 will-moore 'Skip wells' - PR 181 will-moore 'Add labels support for import' - PR 186 jburel 'Create release from tag' Conflicting PRs (not included): - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 182 will-moore 'Revert "Remove support for Plate import"' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:39:12,606 [ scc.git] DEBUG [detached HEAD ab268cf] merge master -Dorg -Ssuccess-only 2026-01-05 00:39:12,606 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:39:12,606 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:39:13,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2026-01-05 00:39:13,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/657 HTTP/1.1" 200 None 2026-01-05 00:39:14,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/657/comments HTTP/1.1" 200 None 2026-01-05 00:39:14,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/edf6948abddd14cbbc1e13e1fb917c09d7c647fb HTTP/1.1" 200 None 2026-01-05 00:39:15,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/edf6948abddd14cbbc1e13e1fb917c09d7c647fb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:39:15,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/edf6948abddd14cbbc1e13e1fb917c09d7c647fb/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:39:16,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/edf6948abddd14cbbc1e13e1fb917c09d7c647fb HTTP/1.1" 200 None 2026-01-05 00:39:16,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/edf6948abddd14cbbc1e13e1fb917c09d7c647fb?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:39:16,694 [ scc.repo] DEBUG - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2026-01-05 00:39:17,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/656 HTTP/1.1" 200 None 2026-01-05 00:39:17,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d HTTP/1.1" 200 None 2026-01-05 00:39:18,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:39:18,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:39:19,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d HTTP/1.1" 200 None 2026-01-05 00:39:19,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/c7d0108c6df89255b8875924ed52e264a72e581d?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:39:19,499 [ scc.repo] DEBUG - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-01-05 00:39:19,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/654 HTTP/1.1" 200 None 2026-01-05 00:39:20,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/654/comments HTTP/1.1" 200 None 2026-01-05 00:39:20,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e1b877b4b9b8cbb506d839dcb304a0b10df25063 HTTP/1.1" 200 None 2026-01-05 00:39:21,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e1b877b4b9b8cbb506d839dcb304a0b10df25063/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:39:21,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e1b877b4b9b8cbb506d839dcb304a0b10df25063/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:39:22,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e1b877b4b9b8cbb506d839dcb304a0b10df25063 HTTP/1.1" 200 None 2026-01-05 00:39:22,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/e1b877b4b9b8cbb506d839dcb304a0b10df25063?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:39:22,852 [ scc.repo] DEBUG - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-01-05 00:39:23,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/652 HTTP/1.1" 200 None 2026-01-05 00:39:23,346 [ scc.repo] DEBUG # ... Include label: include 2026-01-05 00:39:23,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234 HTTP/1.1" 200 None 2026-01-05 00:39:24,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:39:24,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:39:25,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234 HTTP/1.1" 200 None 2026-01-05 00:39:25,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/e4dd3031a6f8b0295d88c5a27d510e2ead252234?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:39:25,728 [ scc.repo] DEBUG - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' 2026-01-05 00:39:26,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/649 HTTP/1.1" 200 None 2026-01-05 00:39:26,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/649/comments HTTP/1.1" 200 None 2026-01-05 00:39:27,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c481ecdb1b184268c7b8a9b1749838da27127e83 HTTP/1.1" 200 None 2026-01-05 00:39:27,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c481ecdb1b184268c7b8a9b1749838da27127e83/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:39:28,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c481ecdb1b184268c7b8a9b1749838da27127e83/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:39:28,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c481ecdb1b184268c7b8a9b1749838da27127e83 HTTP/1.1" 200 None 2026-01-05 00:39:29,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/c481ecdb1b184268c7b8a9b1749838da27127e83?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:39:29,075 [ scc.repo] DEBUG - PR 649 jburel 'Replace manual changelog by automated GH release step' 2026-01-05 00:39:29,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/648 HTTP/1.1" 200 None 2026-01-05 00:39:30,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/648/comments HTTP/1.1" 200 None 2026-01-05 00:39:30,035 [ scc.repo] DEBUG # ... Include label: include 2026-01-05 00:39:30,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/8b7ac78406a43da2a838a8bc7deedd4d19566827 HTTP/1.1" 200 None 2026-01-05 00:39:31,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/8b7ac78406a43da2a838a8bc7deedd4d19566827/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:39:31,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/8b7ac78406a43da2a838a8bc7deedd4d19566827/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:39:32,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641 HTTP/1.1" 200 None 2026-01-05 00:39:32,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641/comments HTTP/1.1" 200 None 2026-01-05 00:39:32,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/619 HTTP/1.1" 200 None 2026-01-05 00:39:32,958 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:39:32,958 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-01-05 00:39:32,958 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:39:32,958 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:32,961 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:39:32,963 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:39:32,963 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:39:32,966 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:39:33,000 [ scc.git] DEBUG Updating 9cc36cde..88b01ef5 2026-01-05 00:39:33,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 None 2026-01-05 00:39:34,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 None 2026-01-05 00:39:35,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 None 2026-01-05 00:39:36,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 None 2026-01-05 00:39:36,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 None 2026-01-05 00:39:37,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 None 2026-01-05 00:39:38,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 None 2026-01-05 00:39:38,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 None 2026-01-05 00:39:39,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 None 2026-01-05 00:39:40,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None 2026-01-05 00:39:40,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None 2026-01-05 00:39:41,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None 2026-01-05 00:39:42,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None 2026-01-05 00:39:42,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None 2026-01-05 00:39:43,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None 2026-01-05 00:39:44,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None 2026-01-05 00:39:44,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None 2026-01-05 00:39:45,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None 2026-01-05 00:39:45,610 [ scc.git] DEBUG Calling 'git fetch origin pull/649/head' 2026-01-05 00:39:45,895 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-01-05 00:39:45,895 [ scc.git] DEBUG * branch refs/pull/649/head -> FETCH_HEAD 2026-01-05 00:39:45,899 [ scc.git] DEBUG Calling 'git fetch origin pull/652/head' 2026-01-05 00:39:46,155 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-01-05 00:39:46,155 [ scc.git] DEBUG * branch refs/pull/652/head -> FETCH_HEAD 2026-01-05 00:39:46,159 [ scc.git] DEBUG Calling 'git fetch origin pull/654/head' 2026-01-05 00:39:46,415 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-01-05 00:39:46,415 [ scc.git] DEBUG * branch refs/pull/654/head -> FETCH_HEAD 2026-01-05 00:39:46,419 [ scc.git] DEBUG Calling 'git fetch origin pull/656/head' 2026-01-05 00:39:46,677 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-01-05 00:39:46,677 [ scc.git] DEBUG * branch refs/pull/656/head -> FETCH_HEAD 2026-01-05 00:39:46,681 [ scc.git] DEBUG Calling 'git fetch origin pull/657/head' 2026-01-05 00:39:46,938 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-01-05 00:39:46,938 [ scc.git] DEBUG * branch refs/pull/657/head -> FETCH_HEAD 2026-01-05 00:39:46,942 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:39:46,942 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:39:46,942 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:46,945 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c481ecdb1b184268c7b8a9b1749838da27127e83' 2026-01-05 00:39:46,951 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:46,953 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 649 (Replace manual changelog by automated GH release step) c481ecdb1b184268c7b8a9b1749838da27127e83' 2026-01-05 00:39:46,967 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-01-05 00:39:46,968 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:39:46,971 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 5 + 2026-01-05 00:39:46,971 [ scc.git] DEBUG CHANGELOG.md | 388 ------------------------------------- 2026-01-05 00:39:46,971 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 388 deletions(-) 2026-01-05 00:39:46,971 [ scc.git] DEBUG delete mode 100644 CHANGELOG.md 2026-01-05 00:39:47,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:39:47,115 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e4dd3031a6f8b0295d88c5a27d510e2ead252234' 2026-01-05 00:39:47,122 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:47,124 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 652 (Add export option for PNG (72 dpi), fixes #394 ) e4dd3031a6f8b0295d88c5a27d510e2ead252234' 2026-01-05 00:39:47,143 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-01-05 00:39:47,143 [ scc.git] DEBUG Auto-merging src/index.html 2026-01-05 00:39:47,144 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2026-01-05 00:39:47,144 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:39:47,148 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 163 ++++++++++++++++++++- 2026-01-05 00:39:47,149 [ scc.git] DEBUG src/index.html | 11 ++ 2026-01-05 00:39:47,149 [ scc.git] DEBUG src/js/views/figure_view.js | 1 + 2026-01-05 00:39:47,149 [ scc.git] DEBUG 3 files changed, 172 insertions(+), 3 deletions(-) 2026-01-05 00:39:47,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:39:47,665 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e1b877b4b9b8cbb506d839dcb304a0b10df25063' 2026-01-05 00:39:47,671 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:47,673 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 654 (Refresh metadata button to reload channel names, pixel sizes) e1b877b4b9b8cbb506d839dcb304a0b10df25063' 2026-01-05 00:39:47,691 [ scc.git] DEBUG Auto-merging src/index.html 2026-01-05 00:39:47,691 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2026-01-05 00:39:47,691 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2026-01-05 00:39:47,692 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:39:47,696 [ scc.git] DEBUG src/index.html | 5 +++ 2026-01-05 00:39:47,696 [ scc.git] DEBUG src/js/models/figure_model.js | 71 +++++++++++++++++++++++++++++++++++++++++++ 2026-01-05 00:39:47,696 [ scc.git] DEBUG src/js/views/figure_view.js | 7 +++++ 2026-01-05 00:39:47,696 [ scc.git] DEBUG 3 files changed, 83 insertions(+) 2026-01-05 00:39:48,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:39:48,057 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c7d0108c6df89255b8875924ed52e264a72e581d' 2026-01-05 00:39:48,062 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:48,064 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 656 (Option to add roi comment when adding ROI from OMERO) c7d0108c6df89255b8875924ed52e264a72e581d' 2026-01-05 00:39:48,075 [ scc.git] DEBUG Auto-merging src/js/shape_editor/shape_manager.js 2026-01-05 00:39:48,076 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:39:48,079 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 3 +- 2026-01-05 00:39:48,079 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 68 +++++++++++++++++------- 2026-01-05 00:39:48,079 [ scc.git] DEBUG src/templates/shapes/shape_sidebar.template.html | 7 ++- 2026-01-05 00:39:48,079 [ scc.git] DEBUG 3 files changed, 56 insertions(+), 22 deletions(-) 2026-01-05 00:39:48,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:39:48,460 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...edf6948abddd14cbbc1e13e1fb917c09d7c647fb' 2026-01-05 00:39:48,464 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:48,466 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 657 (Avoid division by zero and don't save x/y NaN in grid layout) edf6948abddd14cbbc1e13e1fb917c09d7c647fb' 2026-01-05 00:39:48,477 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2026-01-05 00:39:48,477 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:39:48,480 [ scc.git] DEBUG src/js/models/figure_model.js | 18 ++++++++++++------ 2026-01-05 00:39:48,481 [ scc.git] DEBUG 1 file changed, 12 insertions(+), 6 deletions(-) 2026-01-05 00:39:48,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:39:48,852 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:39:48,888 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:39:48,888 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:48,890 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:39:48,926 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:39:48,930 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c0637650> has no local changes 2026-01-05 00:39:48,931 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Excluded PRs: - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required) - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) - PR 619 will-moore 'OME-Zarr support' (stage: draft) Updating 9cc36cde..88b01ef5 Previously merged: - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:39:48,937 [ scc.git] DEBUG [detached HEAD 076a15be] merge master -Dorg -Ssuccess-only 2026-01-05 00:39:48,938 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:39:48,938 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:39:49,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2026-01-05 00:39:49,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2026-01-05 00:39:49,897 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:39:50,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2026-01-05 00:39:50,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:39:51,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:39:51,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2026-01-05 00:39:52,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:39:52,330 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:39:52,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2026-01-05 00:39:53,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2026-01-05 00:39:53,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2026-01-05 00:39:54,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:39:54,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2026-01-05 00:39:55,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:39:55,270 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2026-01-05 00:39:55,270 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:39:55,271 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-01-05 00:39:55,271 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:39:55,271 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:55,273 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:39:55,275 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:39:55,275 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:39:55,278 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:39:55,281 [ scc.git] DEBUG Already up to date. 2026-01-05 00:39:55,281 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2026-01-05 00:39:55,550 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-01-05 00:39:55,551 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2026-01-05 00:39:55,555 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2026-01-05 00:39:55,810 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-01-05 00:39:55,810 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2026-01-05 00:39:55,814 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:39:55,815 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:39:55,815 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:55,817 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-01-05 00:39:55,820 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:55,822 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-01-05 00:39:55,828 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2026-01-05 00:39:55,829 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:39:55,831 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2026-01-05 00:39:55,831 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2026-01-05 00:39:55,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:39:55,993 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-01-05 00:39:55,996 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:55,998 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-01-05 00:39:56,005 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:39:56,008 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-05 00:39:56,008 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:39:56,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:39:56,388 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:39:56,425 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:39:56,425 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:39:56,427 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:39:56,463 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:39:56,466 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c0627750> has no local changes 2026-01-05 00:39:56,466 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:39:56,471 [ scc.git] DEBUG [detached HEAD 61552a7] merge master -Dorg -Ssuccess-only 2026-01-05 00:39:56,472 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:39:56,472 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:39:56,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2026-01-05 00:39:57,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2026-01-05 00:39:58,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2026-01-05 00:39:58,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2026-01-05 00:39:58,513 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:39:59,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2026-01-05 00:39:59,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:00,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:40:00,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2026-01-05 00:40:01,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:01,058 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-01-05 00:40:01,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2026-01-05 00:40:02,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2026-01-05 00:40:02,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2026-01-05 00:40:02,501 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:40:03,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2026-01-05 00:40:03,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:04,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:40:04,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2026-01-05 00:40:05,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:05,178 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-01-05 00:40:05,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2026-01-05 00:40:05,646 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:40:06,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2026-01-05 00:40:06,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:07,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:40:07,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2026-01-05 00:40:08,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:08,088 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-01-05 00:40:08,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2026-01-05 00:40:08,582 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:40:09,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2026-01-05 00:40:09,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:10,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:40:10,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2026-01-05 00:40:11,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:11,135 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-01-05 00:40:11,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2026-01-05 00:40:12,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2026-01-05 00:40:12,098 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:40:12,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2026-01-05 00:40:13,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:13,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:40:14,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2026-01-05 00:40:14,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:14,698 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-01-05 00:40:15,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2026-01-05 00:40:15,197 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:40:15,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2026-01-05 00:40:16,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:16,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:40:17,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2026-01-05 00:40:17,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:17,923 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-01-05 00:40:18,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2026-01-05 00:40:18,409 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:40:19,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2026-01-05 00:40:19,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:20,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:40:20,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2026-01-05 00:40:20,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:20,997 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-01-05 00:40:20,997 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:40:20,997 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-01-05 00:40:20,998 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:40:20,998 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:21,000 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:40:21,002 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:40:21,002 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:40:21,005 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:40:21,008 [ scc.git] DEBUG Already up to date. 2026-01-05 00:40:21,008 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2026-01-05 00:40:21,268 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-05 00:40:21,268 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2026-01-05 00:40:21,272 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2026-01-05 00:40:21,530 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-05 00:40:21,530 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2026-01-05 00:40:21,534 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2026-01-05 00:40:21,787 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-05 00:40:21,787 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2026-01-05 00:40:21,791 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2026-01-05 00:40:22,046 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-05 00:40:22,046 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2026-01-05 00:40:22,050 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2026-01-05 00:40:22,307 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-05 00:40:22,307 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2026-01-05 00:40:22,311 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2026-01-05 00:40:22,573 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-05 00:40:22,573 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2026-01-05 00:40:22,577 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2026-01-05 00:40:22,828 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-05 00:40:22,829 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2026-01-05 00:40:22,832 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:40:22,832 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:40:22,832 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:22,835 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-01-05 00:40:22,837 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:22,839 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-01-05 00:40:22,847 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:40:22,851 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2026-01-05 00:40:22,851 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2026-01-05 00:40:22,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:22,994 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-01-05 00:40:22,997 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:22,999 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-01-05 00:40:23,012 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-05 00:40:23,013 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:40:23,017 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2026-01-05 00:40:23,017 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2026-01-05 00:40:23,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:23,388 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-01-05 00:40:23,390 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:23,392 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-01-05 00:40:23,407 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-05 00:40:23,407 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-01-05 00:40:23,407 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-05 00:40:23,407 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-05 00:40:23,410 [ scc.git] DEBUG Calling 'git reset --hard b21eaf4c76275d1246fc81b2b818c59f2c2d503b' 2026-01-05 00:40:23,414 [ scc.git] DEBUG HEAD is now at b21eaf4 merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2026-01-05 00:40:23,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:23,786 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-01-05 00:40:23,789 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-01-05 00:40:23,791 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#9](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2026-01-05 00:40:23,793 [ scc.config] DEBUG Found github.token 2026-01-05 00:40:23,793 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2026-01-05 00:40:23,793 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-01-05 00:40:23,796 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:23,798 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-01-05 00:40:23,812 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-05 00:40:23,813 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:40:23,817 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2026-01-05 00:40:23,817 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2026-01-05 00:40:24,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:24,176 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-01-05 00:40:24,178 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:24,180 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-01-05 00:40:24,194 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-05 00:40:24,195 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:40:24,199 [ scc.git] DEBUG package-lock.json | 6 +++--- 2026-01-05 00:40:24,199 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2026-01-05 00:40:24,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:24,573 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-01-05 00:40:24,575 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:24,577 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-01-05 00:40:24,592 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-05 00:40:24,592 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-01-05 00:40:24,593 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-05 00:40:24,593 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-05 00:40:24,595 [ scc.git] DEBUG Calling 'git reset --hard 6fb0e4fac356a6433eb9a9d0fa441cf91549cf09' 2026-01-05 00:40:24,600 [ scc.git] DEBUG HEAD is now at 6fb0e4f merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-01-05 00:40:24,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:24,983 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-01-05 00:40:24,986 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-01-05 00:40:24,988 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#9](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2026-01-05 00:40:24,990 [ scc.config] DEBUG Found github.token 2026-01-05 00:40:24,990 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2026-01-05 00:40:24,990 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-01-05 00:40:24,993 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:24,995 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-01-05 00:40:25,012 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-05 00:40:25,012 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-01-05 00:40:25,012 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-05 00:40:25,012 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-05 00:40:25,015 [ scc.git] DEBUG Calling 'git reset --hard 6fb0e4fac356a6433eb9a9d0fa441cf91549cf09' 2026-01-05 00:40:25,019 [ scc.git] DEBUG HEAD is now at 6fb0e4f merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-01-05 00:40:25,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:25,539 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-01-05 00:40:25,542 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-01-05 00:40:25,544 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#9](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2026-01-05 00:40:25,546 [ scc.config] DEBUG Found github.token 2026-01-05 00:40:25,546 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2026-01-05 00:40:25,546 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:40:25,583 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:40:25,583 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:25,585 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:40:25,621 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:40:25,625 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c065bed0> has no local changes 2026-01-05 00:40:25,625 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:40:25,632 [ scc.git] DEBUG [detached HEAD 40bf8b8] merge master -Dorg -Ssuccess-only 2026-01-05 00:40:25,632 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:40:25,632 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:40:26,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2026-01-05 00:40:26,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/513 HTTP/1.1" 200 None 2026-01-05 00:40:27,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688 HTTP/1.1" 200 None 2026-01-05 00:40:27,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:28,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:40:29,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688 HTTP/1.1" 200 None 2026-01-05 00:40:29,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/aebb6273b9267a47a47363208fa97dc9c638a688?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:29,653 [ scc.repo] DEBUG - PR 513 jburel 'Bump Python version' 2026-01-05 00:40:30,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/512 HTTP/1.1" 200 None 2026-01-05 00:40:30,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43 HTTP/1.1" 200 None 2026-01-05 00:40:31,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:31,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:40:32,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43 HTTP/1.1" 200 None 2026-01-05 00:40:32,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/ec8f9e716c574a715529da53dff61ef178020c43?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:32,712 [ scc.repo] DEBUG - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-01-05 00:40:33,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/511 HTTP/1.1" 200 None 2026-01-05 00:40:33,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/508 HTTP/1.1" 200 None 2026-01-05 00:40:34,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503 HTTP/1.1" 200 None 2026-01-05 00:40:34,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503/comments HTTP/1.1" 200 None 2026-01-05 00:40:35,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502 HTTP/1.1" 200 None 2026-01-05 00:40:35,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502/comments HTTP/1.1" 200 None 2026-01-05 00:40:35,871 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:40:36,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2026-01-05 00:40:36,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:37,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:40:38,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2026-01-05 00:40:38,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/45d08b7e29871ecff0386975c975dacd0865bcc4?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:38,488 [ scc.repo] DEBUG - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2026-01-05 00:40:38,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/499 HTTP/1.1" 200 None 2026-01-05 00:40:38,974 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:40:39,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2026-01-05 00:40:39,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:40,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:40:41,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2026-01-05 00:40:41,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:41,582 [ scc.repo] DEBUG - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2026-01-05 00:40:42,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497 HTTP/1.1" 200 None 2026-01-05 00:40:42,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497/comments HTTP/1.1" 200 None 2026-01-05 00:40:43,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2026-01-05 00:40:43,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2026-01-05 00:40:44,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2026-01-05 00:40:44,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:45,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2026-01-05 00:40:45,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:45,694 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2026-01-05 00:40:46,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465 HTTP/1.1" 200 None 2026-01-05 00:40:46,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465/comments HTTP/1.1" 200 None 2026-01-05 00:40:47,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2026-01-05 00:40:47,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:48,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2026-01-05 00:40:48,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/63dd9266a853ff522780066673d0ae2b770238cd?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:48,518 [ scc.repo] DEBUG - PR 465 will-moore 'Save as Figure' 2026-01-05 00:40:48,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460 HTTP/1.1" 200 None 2026-01-05 00:40:49,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460/comments HTTP/1.1" 200 None 2026-01-05 00:40:49,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2026-01-05 00:40:50,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:51,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2026-01-05 00:40:51,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/dada2c46211e3bf8015cc47464ab2761ef74ca30?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:40:51,481 [ scc.repo] DEBUG - PR 460 will-moore 'Channel min spinner fix' 2026-01-05 00:40:52,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227 HTTP/1.1" 200 None 2026-01-05 00:40:52,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227/comments HTTP/1.1" 200 None 2026-01-05 00:40:53,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97 HTTP/1.1" 200 None 2026-01-05 00:40:53,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:40:53,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:40:53,988 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:40:53,988 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-01-05 00:40:53,988 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:40:53,989 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:53,991 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:40:53,993 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:40:53,993 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:40:53,996 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:40:54,003 [ scc.git] DEBUG Updating 7a798ce..5e2de43 2026-01-05 00:40:54,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None 2026-01-05 00:40:55,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None 2026-01-05 00:40:55,331 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head' 2026-01-05 00:40:55,611 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-05 00:40:55,611 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD 2026-01-05 00:40:55,616 [ scc.git] DEBUG Calling 'git fetch origin pull/465/head' 2026-01-05 00:40:55,868 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-05 00:40:55,868 [ scc.git] DEBUG * branch refs/pull/465/head -> FETCH_HEAD 2026-01-05 00:40:55,871 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2026-01-05 00:40:56,129 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-05 00:40:56,129 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2026-01-05 00:40:56,133 [ scc.git] DEBUG Calling 'git fetch origin pull/499/head' 2026-01-05 00:40:56,388 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-05 00:40:56,388 [ scc.git] DEBUG * branch refs/pull/499/head -> FETCH_HEAD 2026-01-05 00:40:56,392 [ scc.git] DEBUG Calling 'git fetch origin pull/502/head' 2026-01-05 00:40:56,651 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-05 00:40:56,651 [ scc.git] DEBUG * branch refs/pull/502/head -> FETCH_HEAD 2026-01-05 00:40:56,655 [ scc.git] DEBUG Calling 'git fetch origin pull/512/head' 2026-01-05 00:40:56,916 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-05 00:40:56,916 [ scc.git] DEBUG * branch refs/pull/512/head -> FETCH_HEAD 2026-01-05 00:40:56,919 [ scc.git] DEBUG Calling 'git fetch origin pull/513/head' 2026-01-05 00:40:57,171 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-05 00:40:57,171 [ scc.git] DEBUG * branch refs/pull/513/head -> FETCH_HEAD 2026-01-05 00:40:57,175 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:40:57,175 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:40:57,175 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:57,177 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dada2c46211e3bf8015cc47464ab2761ef74ca30' 2026-01-05 00:40:57,181 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:57,183 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (Channel min spinner fix) dada2c46211e3bf8015cc47464ab2761ef74ca30' 2026-01-05 00:40:57,193 [ scc.git] DEBUG Auto-merging src/model/image_info.js 2026-01-05 00:40:57,193 [ scc.git] DEBUG Auto-merging src/settings/channel-range.js 2026-01-05 00:40:57,194 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:40:57,197 [ scc.git] DEBUG src/model/image_info.js | 7 ++++--- 2026-01-05 00:40:57,197 [ scc.git] DEBUG src/settings/channel-range.js | 4 +++- 2026-01-05 00:40:57,197 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 4 deletions(-) 2026-01-05 00:40:57,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:57,337 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...63dd9266a853ff522780066673d0ae2b770238cd' 2026-01-05 00:40:57,341 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:57,344 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 465 (Save as Figure) 63dd9266a853ff522780066673d0ae2b770238cd' 2026-01-05 00:40:57,358 [ scc.git] DEBUG Auto-merging plugin/omero_iviewer/views.py 2026-01-05 00:40:57,358 [ scc.git] DEBUG Auto-merging src/app/context.js 2026-01-05 00:40:57,359 [ scc.git] DEBUG Auto-merging src/utils/constants.js 2026-01-05 00:40:57,359 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2026-01-05 00:40:57,359 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:40:57,363 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 17 +++- 2026-01-05 00:40:57,363 [ scc.git] DEBUG src/app/context.js | 6 +- 2026-01-05 00:40:57,363 [ scc.git] DEBUG src/app/header.html | 5 + 2026-01-05 00:40:57,363 [ scc.git] DEBUG src/app/header.js | 45 ++++++++- 2026-01-05 00:40:57,363 [ scc.git] DEBUG src/utils/constants.js | 6 ++ 2026-01-05 00:40:57,363 [ scc.git] DEBUG src/utils/figure.js | 217 ++++++++++++++++++++++++++++++++++++++++++ 2026-01-05 00:40:57,363 [ scc.git] DEBUG 6 files changed, 290 insertions(+), 6 deletions(-) 2026-01-05 00:40:57,363 [ scc.git] DEBUG create mode 100644 src/utils/figure.js 2026-01-05 00:40:57,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:57,755 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2026-01-05 00:40:57,759 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:57,761 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2026-01-05 00:40:57,771 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2026-01-05 00:40:57,772 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:40:57,775 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2026-01-05 00:40:57,775 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2026-01-05 00:40:57,775 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2026-01-05 00:40:58,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:58,162 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2026-01-05 00:40:58,166 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:58,168 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2026-01-05 00:40:58,185 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:40:58,193 [ scc.git] DEBUG package-lock.json | 322 +++++++++++++++++++++++++++--------------------------- 2026-01-05 00:40:58,193 [ scc.git] DEBUG package.json | 2 +- 2026-01-05 00:40:58,193 [ scc.git] DEBUG 2 files changed, 163 insertions(+), 161 deletions(-) 2026-01-05 00:40:58,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:58,558 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45d08b7e29871ecff0386975c975dacd0865bcc4' 2026-01-05 00:40:58,562 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:58,564 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 502 (Bump serialize-javascript and mocha) 45d08b7e29871ecff0386975c975dacd0865bcc4' 2026-01-05 00:40:58,599 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-05 00:40:58,599 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-01-05 00:40:58,600 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-05 00:40:58,600 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-05 00:40:58,603 [ scc.git] DEBUG Calling 'git reset --hard 689dd8e18d0ed9cb98e43c886acceca3d25e98dc' 2026-01-05 00:40:58,614 [ scc.git] DEBUG HEAD is now at 689dd8e merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) 2026-01-05 00:40:59,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:59,043 [ scc.git] DEBUG Calling 'git merge-base 5e2de43ad401fb00690a79644056e0ac15fabfd5 45d08b7e29871ecff0386975c975dacd0865bcc4' 2026-01-05 00:40:59,045 [ scc.git] DEBUG Calling 'git diff --name-only 7a798ceeb3926d049d73788555fb63269a071052..5e2de43ad401fb00690a79644056e0ac15fabfd5' 2026-01-05 00:40:59,048 [ scc.git] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Conflicting PR. Removed from build [OMERO-plugins-push#9](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/consoleText) for more details. Possible conflicts: - PR #499 dependabot[bot] 'Bump nanoid and mocha' - package-lock.json --conflicts 2026-01-05 00:40:59,050 [ scc.config] DEBUG Found github.token 2026-01-05 00:40:59,050 [ scc.git] DEBUG Not adding comment to issue #502, already --conflicts. 2026-01-05 00:40:59,050 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ec8f9e716c574a715529da53dff61ef178020c43' 2026-01-05 00:40:59,054 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:59,056 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 512 (Replace manual changelog by automated GH release step) ec8f9e716c574a715529da53dff61ef178020c43' 2026-01-05 00:40:59,067 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:40:59,070 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 5 + 2026-01-05 00:40:59,070 [ scc.git] DEBUG CHANGELOG.md | 261 ------------------------------------- 2026-01-05 00:40:59,070 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 261 deletions(-) 2026-01-05 00:40:59,070 [ scc.git] DEBUG delete mode 100644 CHANGELOG.md 2026-01-05 00:40:59,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:59,438 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...aebb6273b9267a47a47363208fa97dc9c638a688' 2026-01-05 00:40:59,442 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:59,445 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 513 (Bump Python version) aebb6273b9267a47a47363208fa97dc9c638a688' 2026-01-05 00:40:59,453 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-01-05 00:40:59,454 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:40:59,456 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 4 ++-- 2026-01-05 00:40:59,456 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 2 deletions(-) 2026-01-05 00:40:59,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:40:59,827 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:40:59,864 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:40:59,864 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:40:59,866 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:40:59,902 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:40:59,905 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67bc461790> has no local changes 2026-01-05 00:40:59,905 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..5e2de43 Previously merged: - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 513 jburel 'Bump Python version' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:40:59,912 [ scc.git] DEBUG [detached HEAD 558ce1e] merge master -Dorg -Ssuccess-only 2026-01-05 00:40:59,912 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:40:59,912 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:41:00,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2026-01-05 00:41:00,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2026-01-05 00:41:01,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2026-01-05 00:41:01,326 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:41:01,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2026-01-05 00:41:02,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:02,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:41:03,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2026-01-05 00:41:03,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:41:03,839 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:41:04,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2026-01-05 00:41:04,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2026-01-05 00:41:05,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:05,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2026-01-05 00:41:06,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:41:06,162 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-05 00:41:06,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2026-01-05 00:41:07,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2026-01-05 00:41:07,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2026-01-05 00:41:08,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:08,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2026-01-05 00:41:09,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:41:09,220 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient' 2026-01-05 00:41:09,221 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:41:09,221 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-01-05 00:41:09,221 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:09,221 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:09,223 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:41:09,225 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:41:09,226 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:41:09,228 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:41:09,231 [ scc.git] DEBUG Already up to date. 2026-01-05 00:41:09,231 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2026-01-05 00:41:09,505 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-01-05 00:41:09,505 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2026-01-05 00:41:09,509 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2026-01-05 00:41:09,766 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-01-05 00:41:09,766 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2026-01-05 00:41:09,769 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2026-01-05 00:41:10,024 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-01-05 00:41:10,024 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2026-01-05 00:41:10,028 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:41:10,029 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:10,029 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:10,031 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322' 2026-01-05 00:41:10,034 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:10,036 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322' 2026-01-05 00:41:10,043 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:41:10,046 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++ 2026-01-05 00:41:10,046 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 --------------------- 2026-01-05 00:41:10,046 [ scc.git] DEBUG requirements.txt | 2 +- 2026-01-05 00:41:10,047 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-) 2026-01-05 00:41:10,047 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html 2026-01-05 00:41:10,047 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2026-01-05 00:41:10,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:41:10,192 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-01-05 00:41:10,195 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:10,197 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-01-05 00:41:10,204 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:41:10,207 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-05 00:41:10,207 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:41:10,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:41:10,597 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-01-05 00:41:10,600 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:10,602 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-01-05 00:41:10,608 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-01-05 00:41:10,608 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2026-01-05 00:41:10,609 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-05 00:41:10,609 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-05 00:41:10,611 [ scc.git] DEBUG Calling 'git reset --hard f3a780bbc7a01360f26898e334d2687a047374e8' 2026-01-05 00:41:10,615 [ scc.git] DEBUG HEAD is now at f3a780b merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2026-01-05 00:41:11,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:41:11,164 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-01-05 00:41:11,166 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2026-01-05 00:41:11,168 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#9](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2026-01-05 00:41:11,170 [ scc.config] DEBUG Found github.token 2026-01-05 00:41:11,170 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2026-01-05 00:41:11,171 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:41:11,207 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:11,207 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:11,209 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:41:11,245 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:41:11,248 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c0758f90> has no local changes 2026-01-05 00:41:11,248 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:41:11,254 [ scc.git] DEBUG [detached HEAD 23e47cc] merge master -Dorg -Ssuccess-only 2026-01-05 00:41:11,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:41:11,254 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:41:11,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2026-01-05 00:41:12,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2026-01-05 00:41:12,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2026-01-05 00:41:13,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2026-01-05 00:41:13,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:14,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2026-01-05 00:41:14,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:41:14,758 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-01-05 00:41:15,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None 2026-01-05 00:41:15,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None 2026-01-05 00:41:16,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2026-01-05 00:41:16,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:17,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2026-01-05 00:41:17,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:41:17,499 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-01-05 00:41:17,499 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:41:17,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-01-05 00:41:17,499 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:17,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:17,501 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:41:17,503 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:41:17,504 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:41:17,506 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:41:17,512 [ scc.git] DEBUG Updating 3cd120c..55060a2 2026-01-05 00:41:18,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None 2026-01-05 00:41:18,161 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head' 2026-01-05 00:41:18,426 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-01-05 00:41:18,426 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD 2026-01-05 00:41:18,430 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2026-01-05 00:41:18,684 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-01-05 00:41:18,684 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2026-01-05 00:41:18,688 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:41:18,688 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:18,688 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:18,691 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-01-05 00:41:18,694 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:18,696 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-01-05 00:41:18,708 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py 2026-01-05 00:41:18,708 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py 2026-01-05 00:41:18,708 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-01-05 00:41:18,708 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-01-05 00:41:18,708 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-05 00:41:18,709 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-05 00:41:18,711 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2026-01-05 00:41:18,715 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-01-05 00:41:18,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:41:18,852 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-01-05 00:41:18,856 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501' 2026-01-05 00:41:18,858 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' Conflicting PR. Removed from build [OMERO-plugins-push#9](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/populate.py - src/omero_metadata/cli.py --conflicts 2026-01-05 00:41:18,860 [ scc.config] DEBUG Found github.token 2026-01-05 00:41:18,860 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts. 2026-01-05 00:41:18,860 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2026-01-05 00:41:18,864 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:18,866 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2026-01-05 00:41:18,879 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-01-05 00:41:18,879 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-01-05 00:41:18,879 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2026-01-05 00:41:18,879 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-05 00:41:18,879 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-05 00:41:18,882 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2026-01-05 00:41:18,887 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-01-05 00:41:19,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:41:19,242 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7' 2026-01-05 00:41:19,246 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501' 2026-01-05 00:41:19,248 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#9](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/consoleText) for more details. Possible conflicts: - PR #55 kkoz 'Prevent users from creating columns with python keyword names' - src/omero_metadata/populate.py - Upstream changes - src/omero_metadata/populate.py --conflicts 2026-01-05 00:41:19,250 [ scc.config] DEBUG Found github.token 2026-01-05 00:41:19,251 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2026-01-05 00:41:19,251 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:41:19,288 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:19,288 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:19,290 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:41:19,326 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:41:19,330 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c05f9350> has no local changes 2026-01-05 00:41:19,330 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:41:19,336 [ scc.git] DEBUG [detached HEAD df41bab] merge master -Dorg -Ssuccess-only 2026-01-05 00:41:19,336 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:41:19,336 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:41:19,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2026-01-05 00:41:20,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2026-01-05 00:41:20,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2026-01-05 00:41:21,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:22,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:41:22,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2026-01-05 00:41:23,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:41:23,064 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-05 00:41:23,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2026-01-05 00:41:23,549 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:41:24,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2026-01-05 00:41:24,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:25,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:41:25,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2026-01-05 00:41:26,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:41:26,230 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-01-05 00:41:26,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2026-01-05 00:41:26,700 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:41:27,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2026-01-05 00:41:27,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:28,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:41:28,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2026-01-05 00:41:29,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:41:29,143 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-01-05 00:41:29,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2026-01-05 00:41:30,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2026-01-05 00:41:30,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2026-01-05 00:41:31,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2026-01-05 00:41:31,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2026-01-05 00:41:32,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2026-01-05 00:41:32,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2026-01-05 00:41:32,753 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:41:32,753 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-01-05 00:41:32,753 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:32,753 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:32,755 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:41:32,757 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:41:32,757 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:41:32,760 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:41:32,763 [ scc.git] DEBUG Already up to date. 2026-01-05 00:41:32,763 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2026-01-05 00:41:33,025 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-01-05 00:41:33,025 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2026-01-05 00:41:33,029 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2026-01-05 00:41:33,286 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-01-05 00:41:33,286 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2026-01-05 00:41:33,290 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2026-01-05 00:41:33,548 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-01-05 00:41:33,548 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2026-01-05 00:41:33,552 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:41:33,552 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:33,552 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:33,554 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2026-01-05 00:41:33,556 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:33,558 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2026-01-05 00:41:33,565 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:41:33,568 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2026-01-05 00:41:33,568 [ scc.git] DEBUG package.json | 2 +- 2026-01-05 00:41:33,568 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2026-01-05 00:41:33,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:41:33,867 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2026-01-05 00:41:33,870 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:33,872 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2026-01-05 00:41:33,880 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-05 00:41:33,880 [ scc.git] DEBUG Auto-merging package.json 2026-01-05 00:41:33,881 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:41:33,884 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2026-01-05 00:41:33,884 [ scc.git] DEBUG package.json | 2 +- 2026-01-05 00:41:33,884 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2026-01-05 00:41:34,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:41:34,265 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-01-05 00:41:34,268 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:34,270 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-01-05 00:41:34,277 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:41:34,279 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-05 00:41:34,279 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:41:34,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:41:34,677 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:41:34,713 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:34,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:34,715 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:41:34,751 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:41:34,754 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c057ed50> has no local changes 2026-01-05 00:41:34,754 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:41:34,760 [ scc.git] DEBUG [detached HEAD 93ffdbb] merge master -Dorg -Ssuccess-only 2026-01-05 00:41:34,760 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:41:34,760 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:41:35,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2026-01-05 00:41:35,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2026-01-05 00:41:35,748 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:41:36,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2026-01-05 00:41:36,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:37,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:41:37,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2026-01-05 00:41:38,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:41:38,282 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:41:38,282 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:41:38,282 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-01-05 00:41:38,282 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:38,282 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:38,284 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:41:38,287 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:41:38,287 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:41:38,289 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:41:38,292 [ scc.git] DEBUG Already up to date. 2026-01-05 00:41:38,292 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2026-01-05 00:41:38,556 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2026-01-05 00:41:38,556 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2026-01-05 00:41:38,560 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:41:38,560 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:38,560 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:38,562 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2026-01-05 00:41:38,565 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:38,567 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2026-01-05 00:41:38,573 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:41:38,575 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-05 00:41:38,575 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:41:38,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:41:38,730 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:41:38,766 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:38,766 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:38,768 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:41:38,804 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:41:38,807 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67bc4a5850> has no local changes 2026-01-05 00:41:38,807 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:41:38,812 [ scc.git] DEBUG [detached HEAD a67e939] merge master -Dorg -Ssuccess-only 2026-01-05 00:41:38,812 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:41:38,812 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:41:39,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2026-01-05 00:41:39,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None 2026-01-05 00:41:39,833 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:41:40,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-01-05 00:41:40,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:41,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:41:41,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-01-05 00:41:42,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:42,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-01-05 00:41:43,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None 2026-01-05 00:41:43,390 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:41:43,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None 2026-01-05 00:41:44,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None 2026-01-05 00:41:45,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2026-01-05 00:41:45,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:46,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:41:46,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2026-01-05 00:41:46,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:47,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2026-01-05 00:41:47,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None 2026-01-05 00:41:47,846 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions' 2026-01-05 00:41:48,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2026-01-05 00:41:48,310 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:41:48,310 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-01-05 00:41:48,310 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:48,310 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:48,313 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:41:48,315 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:41:48,315 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:41:48,318 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:41:48,321 [ scc.git] DEBUG Already up to date. 2026-01-05 00:41:48,321 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head' 2026-01-05 00:41:48,594 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2026-01-05 00:41:48,594 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD 2026-01-05 00:41:48,598 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head' 2026-01-05 00:41:48,850 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2026-01-05 00:41:48,850 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD 2026-01-05 00:41:48,854 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:41:48,854 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:48,854 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:48,856 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3' 2026-01-05 00:41:48,859 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:48,861 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3' 2026-01-05 00:41:48,867 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:41:48,870 [ scc.git] DEBUG setup.py | 4 +- 2026-01-05 00:41:48,870 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 + 2026-01-05 00:41:48,870 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++-- 2026-01-05 00:41:48,870 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-) 2026-01-05 00:41:49,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:41:49,016 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301' 2026-01-05 00:41:49,019 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:49,022 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301' 2026-01-05 00:41:49,029 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:41:49,031 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-05 00:41:49,031 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:41:49,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:41:49,415 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:41:49,452 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:49,452 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:49,454 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:41:49,490 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:41:49,493 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67bc49a5d0> has no local changes 2026-01-05 00:41:49,493 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:41:49,499 [ scc.git] DEBUG [detached HEAD a63fc10] merge master -Dorg -Ssuccess-only 2026-01-05 00:41:49,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:41:49,499 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:41:49,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2026-01-05 00:41:50,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None 2026-01-05 00:41:50,447 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:41:51,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2026-01-05 00:41:51,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:52,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:41:52,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2026-01-05 00:41:53,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:41:53,009 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:41:53,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2026-01-05 00:41:53,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2026-01-05 00:41:54,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2026-01-05 00:41:54,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:41:55,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2026-01-05 00:41:55,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:41:55,846 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2026-01-05 00:41:55,846 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:41:55,846 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-01-05 00:41:55,846 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:55,846 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:55,848 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:41:55,850 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:41:55,851 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:41:55,853 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:41:55,856 [ scc.git] DEBUG Already up to date. 2026-01-05 00:41:55,856 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-01-05 00:41:56,148 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-01-05 00:41:56,148 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-01-05 00:41:56,151 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-01-05 00:41:56,401 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-01-05 00:41:56,401 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-01-05 00:41:56,405 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:41:56,405 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:56,405 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:56,407 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-01-05 00:41:56,410 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:56,412 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-01-05 00:41:56,419 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2026-01-05 00:41:56,419 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2026-01-05 00:41:56,419 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2026-01-05 00:41:56,419 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2026-01-05 00:41:56,419 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2026-01-05 00:41:56,419 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2026-01-05 00:41:56,419 [ scc.git] DEBUG Auto-merging setup.py 2026-01-05 00:41:56,419 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2026-01-05 00:41:56,419 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-05 00:41:56,419 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-05 00:41:56,422 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e' 2026-01-05 00:41:56,426 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build 2026-01-05 00:41:56,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:41:56,584 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-01-05 00:41:56,586 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e' 2026-01-05 00:41:56,589 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#9](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/signup_settings.py - omero_signup/views.py - omero_signup/urls.py - setup.py --conflicts 2026-01-05 00:41:56,591 [ scc.config] DEBUG Found github.token 2026-01-05 00:41:56,591 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2026-01-05 00:41:56,591 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-01-05 00:41:56,593 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:56,595 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-01-05 00:41:56,602 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:41:56,604 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-05 00:41:56,604 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:41:56,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:41:56,980 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:41:57,016 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:41:57,016 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:41:57,018 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:41:57,053 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:41:57,057 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67bc49a450> has no local changes 2026-01-05 00:41:57,057 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:41:57,062 [ scc.git] DEBUG [detached HEAD 10392ad] merge master -Dorg -Ssuccess-only 2026-01-05 00:41:57,063 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:41:57,063 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:41:57,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2026-01-05 00:41:58,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2026-01-05 00:41:58,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2026-01-05 00:41:59,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None 2026-01-05 00:41:59,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None 2026-01-05 00:42:00,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:42:00,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:42:00,711 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:42:00,711 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-01-05 00:42:00,711 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:00,711 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:00,713 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:42:00,715 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:42:00,715 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:42:00,718 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:42:00,725 [ scc.git] DEBUG Updating cda3ec6..c8a0015 2026-01-05 00:42:01,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None 2026-01-05 00:42:02,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None 2026-01-05 00:42:02,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None 2026-01-05 00:42:02,768 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:42:02,768 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:02,768 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:02,770 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:42:02,806 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:02,806 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:02,808 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:42:02,843 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:42:02,846 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c0672f50> has no local changes 2026-01-05 00:42:02,846 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:42:02,852 [ scc.git] DEBUG [detached HEAD a332396] merge master -Dorg -Ssuccess-only 2026-01-05 00:42:02,852 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:02,852 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:42:03,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2026-01-05 00:42:03,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2026-01-05 00:42:03,846 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:42:04,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2026-01-05 00:42:05,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:42:05,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:42:06,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2026-01-05 00:42:06,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:42:06,747 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:06,747 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:42:06,747 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-01-05 00:42:06,747 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:06,747 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:06,750 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:42:06,752 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:42:06,752 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:42:06,754 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:42:06,757 [ scc.git] DEBUG Already up to date. 2026-01-05 00:42:06,757 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-01-05 00:42:07,033 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2026-01-05 00:42:07,034 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-01-05 00:42:07,038 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:42:07,038 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:07,038 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:07,040 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-01-05 00:42:07,043 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:07,045 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-01-05 00:42:07,051 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:42:07,054 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-05 00:42:07,054 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:42:07,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:07,200 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:42:07,236 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:07,236 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:07,238 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:42:07,273 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:42:07,276 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c0693390> has no local changes 2026-01-05 00:42:07,276 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:42:07,282 [ scc.git] DEBUG [detached HEAD 34cf5fd] merge master -Dorg -Ssuccess-only 2026-01-05 00:42:07,282 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:07,282 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:42:07,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2026-01-05 00:42:08,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2026-01-05 00:42:08,188 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:42:08,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2026-01-05 00:42:09,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:42:09,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:42:10,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2026-01-05 00:42:10,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:42:10,723 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:10,723 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:42:10,723 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-01-05 00:42:10,723 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:10,723 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:10,726 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:42:10,728 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:42:10,728 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:42:10,730 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:42:10,737 [ scc.git] DEBUG Updating deab817..160d894 2026-01-05 00:42:11,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None 2026-01-05 00:42:11,414 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-01-05 00:42:11,675 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2026-01-05 00:42:11,675 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-01-05 00:42:11,679 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:42:11,679 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:11,679 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:11,681 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-01-05 00:42:11,683 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:11,685 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-01-05 00:42:11,692 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:42:11,694 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-05 00:42:11,694 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:42:11,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:11,832 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:42:11,868 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:11,868 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:11,870 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:42:11,906 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:42:11,909 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c06a2650> has no local changes 2026-01-05 00:42:11,909 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:42:11,914 [ scc.git] DEBUG [detached HEAD c46f4e2] merge master -Dorg -Ssuccess-only 2026-01-05 00:42:11,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:11,915 [ scc.git] INFO Overriding base-branch from master to main 2026-01-05 00:42:11,915 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:42:12,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2026-01-05 00:42:12,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2026-01-05 00:42:13,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2026-01-05 00:42:13,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2026-01-05 00:42:14,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:42:14,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:42:15,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2026-01-05 00:42:15,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:42:15,725 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2026-01-05 00:42:16,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2026-01-05 00:42:16,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2026-01-05 00:42:17,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2026-01-05 00:42:17,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2026-01-05 00:42:18,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:42:18,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2026-01-05 00:42:19,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:42:19,082 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-01-05 00:42:19,082 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:42:19,082 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-01-05 00:42:19,082 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:19,082 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:19,085 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2026-01-05 00:42:19,087 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:42:19,087 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2026-01-05 00:42:19,089 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2026-01-05 00:42:19,096 [ scc.git] DEBUG Updating 8f3c313..4e1e685 2026-01-05 00:42:19,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None 2026-01-05 00:42:20,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None 2026-01-05 00:42:20,424 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2026-01-05 00:42:20,698 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-01-05 00:42:20,698 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2026-01-05 00:42:20,702 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-01-05 00:42:20,956 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-01-05 00:42:20,956 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-01-05 00:42:20,959 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:42:20,959 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:20,959 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:20,961 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-01-05 00:42:20,964 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:20,966 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-01-05 00:42:20,973 [ scc.git] DEBUG Auto-merging README.rst 2026-01-05 00:42:20,973 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2026-01-05 00:42:20,973 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2026-01-05 00:42:20,973 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-01-05 00:42:20,973 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-05 00:42:20,974 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-05 00:42:20,976 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-01-05 00:42:20,979 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-01-05 00:42:21,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:21,173 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-01-05 00:42:21,175 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-01-05 00:42:21,178 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#9](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2026-01-05 00:42:21,180 [ scc.config] DEBUG Found github.token 2026-01-05 00:42:21,180 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2026-01-05 00:42:21,180 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-01-05 00:42:21,182 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:21,185 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-01-05 00:42:21,192 [ scc.git] DEBUG Auto-merging README.rst 2026-01-05 00:42:21,192 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-01-05 00:42:21,193 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:42:21,196 [ scc.git] DEBUG README.rst | 3 + 2026-01-05 00:42:21,196 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2026-01-05 00:42:21,196 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2026-01-05 00:42:21,196 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2026-01-05 00:42:21,196 [ scc.git] DEBUG setup.py | 5 +- 2026-01-05 00:42:21,196 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2026-01-05 00:42:21,196 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2026-01-05 00:42:21,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:21,582 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:42:21,618 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:21,618 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:21,620 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:42:21,655 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:42:21,659 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67bc50c190> has no local changes 2026-01-05 00:42:21,659 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:42:21,664 [ scc.git] DEBUG [detached HEAD 10fc38f] merge master -Dorg -Ssuccess-only 2026-01-05 00:42:21,665 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:21,665 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:42:22,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2026-01-05 00:42:22,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2026-01-05 00:42:22,590 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:42:23,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2026-01-05 00:42:23,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:42:24,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:42:24,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2026-01-05 00:42:25,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:42:25,348 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:25,348 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:42:25,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-01-05 00:42:25,348 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:25,348 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:25,350 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:42:25,353 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:42:25,353 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:42:25,355 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:42:25,358 [ scc.git] DEBUG Already up to date. 2026-01-05 00:42:25,358 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2026-01-05 00:42:25,624 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2026-01-05 00:42:25,625 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2026-01-05 00:42:25,628 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:42:25,628 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:25,628 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:25,630 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-01-05 00:42:25,633 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:25,635 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-01-05 00:42:25,641 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:42:25,643 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-05 00:42:25,643 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:42:26,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:26,001 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:42:26,038 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:26,038 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:26,040 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:42:26,077 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:42:26,080 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67bc49f150> has no local changes 2026-01-05 00:42:26,080 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:42:26,085 [ scc.git] DEBUG [detached HEAD e1b2bff] merge master -Dorg -Ssuccess-only 2026-01-05 00:42:26,085 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:26,085 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:42:26,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2026-01-05 00:42:27,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2026-01-05 00:42:27,064 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-05 00:42:27,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2026-01-05 00:42:28,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:42:28,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:42:29,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2026-01-05 00:42:29,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:42:29,708 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:29,708 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:42:29,708 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-01-05 00:42:29,708 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:29,708 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:29,710 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:42:29,712 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:42:29,712 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:42:29,715 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:42:29,718 [ scc.git] DEBUG Already up to date. 2026-01-05 00:42:29,718 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2026-01-05 00:42:29,988 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2026-01-05 00:42:29,988 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2026-01-05 00:42:29,991 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:42:29,991 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:29,991 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:29,993 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-01-05 00:42:29,996 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:29,998 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-01-05 00:42:30,005 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:42:30,007 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-05 00:42:30,007 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-05 00:42:30,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:30,196 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:42:30,235 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:30,235 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:30,237 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:42:30,274 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:42:30,278 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67bc4dfd50> has no local changes 2026-01-05 00:42:30,278 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:42:30,283 [ scc.git] DEBUG [detached HEAD 2defc61] merge master -Dorg -Ssuccess-only 2026-01-05 00:42:30,284 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:30,284 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:42:30,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2 2026-01-05 00:42:30,627 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:42:30,628 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-01-05 00:42:30,628 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:30,628 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:30,630 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-05 00:42:30,632 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:42:30,632 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-05 00:42:30,634 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-05 00:42:30,637 [ scc.git] DEBUG Already up to date. 2026-01-05 00:42:30,637 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:42:30,637 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:30,637 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:30,639 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:42:30,676 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:30,676 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:30,678 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:42:30,712 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:42:30,715 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c082afd0> has no local changes 2026-01-05 00:42:30,715 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:42:30,721 [ scc.git] DEBUG [detached HEAD 54f0c7d] merge master -Dorg -Ssuccess-only 2026-01-05 00:42:30,721 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:30,721 [ scc.git] INFO Overriding base-branch from master to develop 2026-01-05 00:42:30,721 [ scc.repo] DEBUG ## PRs found: 2026-01-05 00:42:31,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2026-01-05 00:42:31,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/231 HTTP/1.1" 200 None 2026-01-05 00:42:32,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None 2026-01-05 00:42:32,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-05 00:42:33,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-05 00:42:33,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None 2026-01-05 00:42:33,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/61803424b63d5c1bf9ff0906f389526c875c901d?per_page=1 HTTP/1.1" 200 2 2026-01-05 00:42:33,986 [ scc.repo] DEBUG - PR 231 jburel 'Create Release ' 2026-01-05 00:42:34,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2026-01-05 00:42:34,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2026-01-05 00:42:34,969 [ scc.repo] DEBUG ## Branches found: 2026-01-05 00:42:34,970 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-01-05 00:42:34,970 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:34,970 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:34,972 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2026-01-05 00:42:34,974 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-05 00:42:34,974 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2026-01-05 00:42:34,977 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2026-01-05 00:42:34,988 [ scc.git] DEBUG Updating 4b4c755..18a9a75 2026-01-05 00:42:35,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None 2026-01-05 00:42:36,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None 2026-01-05 00:42:36,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None 2026-01-05 00:42:37,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None 2026-01-05 00:42:38,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None 2026-01-05 00:42:38,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None 2026-01-05 00:42:38,937 [ scc.git] DEBUG Calling 'git fetch origin pull/231/head' 2026-01-05 00:42:39,205 [ scc.git] DEBUG From https://github.com/ome/scripts 2026-01-05 00:42:39,205 [ scc.git] DEBUG * branch refs/pull/231/head -> FETCH_HEAD 2026-01-05 00:42:39,209 [ scc.git] DEBUG ## Unique users: [] 2026-01-05 00:42:39,209 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:39,209 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:39,212 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...61803424b63d5c1bf9ff0906f389526c875c901d' 2026-01-05 00:42:39,214 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:39,216 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 231 (Create Release ) 61803424b63d5c1bf9ff0906f389526c875c901d' 2026-01-05 00:42:39,224 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-05 00:42:39,226 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 11 +++++++---- 2026-01-05 00:42:39,226 [ scc.git] DEBUG 1 file changed, 7 insertions(+), 4 deletions(-) 2026-01-05 00:42:39,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:39,371 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-05 00:42:39,408 [ scc.git] DEBUG Get sha1 of %s 2026-01-05 00:42:39,408 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-05 00:42:39,410 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:42:39,448 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:42:39,451 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67bc54b750> has no local changes 2026-01-05 00:42:39,451 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) Updating 4b4c755..18a9a75 Previously merged: - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 231 jburel 'Create Release ' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:42:39,457 [ scc.git] DEBUG [detached HEAD d9e635a] merge master -Dorg -Ssuccess-only 2026-01-05 00:42:39,457 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:39,457 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-05 00:42:39,525 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2026-01-05 00:42:39,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:39,776 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2026-01-05 00:42:39,777 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2026-01-05 00:42:40,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:40,336 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2026-01-05 00:42:40,338 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2026-01-05 00:42:40,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:40,735 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2026-01-05 00:42:40,737 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2026-01-05 00:42:41,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:41,137 [ scc.config] DEBUG Found submodule.omero-figure.url 2026-01-05 00:42:41,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:41,673 [ scc.config] DEBUG Found submodule.omero-figure.branch 2026-01-05 00:42:41,675 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2026-01-05 00:42:42,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:42,063 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2026-01-05 00:42:42,065 [ scc.config] DEBUG Found submodule.omero-gallery.url 2026-01-05 00:42:42,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:42,464 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2026-01-05 00:42:42,466 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2026-01-05 00:42:42,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:42,859 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2026-01-05 00:42:42,861 [ scc.config] DEBUG Found submodule.omero-mapr.url 2026-01-05 00:42:43,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:43,283 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2026-01-05 00:42:43,284 [ scc.config] DEBUG Found submodule.omero-metadata.url 2026-01-05 00:42:43,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:43,671 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2026-01-05 00:42:43,673 [ scc.config] DEBUG Found submodule.omero-parade.url 2026-01-05 00:42:44,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:44,071 [ scc.config] DEBUG Found submodule.omero-parade.branch 2026-01-05 00:42:44,073 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2026-01-05 00:42:44,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:44,462 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2026-01-05 00:42:44,463 [ scc.config] DEBUG Found submodule.omero-rois.url 2026-01-05 00:42:44,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:44,861 [ scc.config] DEBUG Found submodule.omero-signup.url 2026-01-05 00:42:45,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:45,253 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2026-01-05 00:42:45,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:45,639 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2026-01-05 00:42:45,640 [ scc.config] DEBUG Found submodule.omero-upload.url 2026-01-05 00:42:46,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:46,026 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2026-01-05 00:42:46,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:46,440 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2026-01-05 00:42:46,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:46,985 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2026-01-05 00:42:46,987 [ scc.config] DEBUG Found submodule.omero-weberror.url 2026-01-05 00:42:47,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:47,383 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2026-01-05 00:42:47,385 [ scc.config] DEBUG Found submodule.omero-webtest.url 2026-01-05 00:42:47,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:47,785 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2026-01-05 00:42:47,786 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2026-01-05 00:42:48,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:48,186 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2026-01-05 00:42:48,188 [ scc.config] DEBUG Found submodule.scripts.url 2026-01-05 00:42:48,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-05 00:42:48,594 [ scc.config] DEBUG Found submodule.scripts.branch 2026-01-05 00:42:48,594 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-05 00:42:48,667 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f67c2e7b3d0> has local changes 2026-01-05 00:42:48,668 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..37ea700 Previously merged: - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 174 will-moore 'Skip wells' - PR 181 will-moore 'Add labels support for import' - PR 186 jburel 'Create release from tag' Conflicting PRs (not included): - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 182 will-moore 'Revert "Remove support for Plate import"' Repository: ome/omero-figure Excluded PRs: - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required) - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) - PR 619 will-moore 'OME-Zarr support' (stage: draft) Updating 9cc36cde..88b01ef5 Previously merged: - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..5e2de43 Previously merged: - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 513 jburel 'Bump Python version' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) Updating 4b4c755..18a9a75 Previously merged: - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 231 jburel 'Create Release ' Generated by OMERO-plugins-push#9 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/9/)' 2026-01-05 00:42:48,679 [ scc.git] DEBUG [detached HEAD 799f094] merge master -Dorg -Ssuccess-only 2026-01-05 00:42:48,679 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-) 2026-01-05 00:42:48,679 [ scc.merge] INFO Repository: ome/omero-plugins 2026-01-05 00:42:48,679 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,679 [ scc.merge] INFO 2026-01-05 00:42:48,679 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,679 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-01-05 00:42:48,679 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-01-05 00:42:48,679 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-01-05 00:42:48,679 [ scc.merge] INFO 2026-01-05 00:42:48,679 [ scc.merge] INFO Repository: ome/minimal-omero-client 2026-01-05 00:42:48,679 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,679 [ scc.merge] INFO 2026-01-05 00:42:48,679 [ scc.merge] INFO 2026-01-05 00:42:48,680 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2026-01-05 00:42:48,680 [ scc.merge] INFO Excluded PRs: 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2026-01-05 00:42:48,680 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,680 [ scc.merge] INFO 2026-01-05 00:42:48,680 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:48,680 [ scc.merge] INFO 2026-01-05 00:42:48,680 [ scc.merge] INFO Repository: ome/omero-cli-render 2026-01-05 00:42:48,680 [ scc.merge] INFO Excluded PRs: 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2026-01-05 00:42:48,680 [ scc.merge] INFO Updating ce6e13c..68b7303 2026-01-05 00:42:48,680 [ scc.merge] INFO Previously merged: 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step' 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set' 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2026-01-05 00:42:48,680 [ scc.merge] INFO 2026-01-05 00:42:48,680 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2026-01-05 00:42:48,680 [ scc.merge] INFO 2026-01-05 00:42:48,680 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2026-01-05 00:42:48,680 [ scc.merge] INFO Excluded PRs: 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure) 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft) 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft) 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2026-01-05 00:42:48,680 [ scc.merge] INFO Updating 11d3587..37ea700 2026-01-05 00:42:48,680 [ scc.merge] INFO Previously merged: 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-05 00:42:48,680 [ scc.merge] INFO 2026-01-05 00:42:48,680 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' 2026-01-05 00:42:48,680 [ scc.merge] INFO - PR 186 jburel 'Create release from tag' 2026-01-05 00:42:48,680 [ scc.merge] INFO 2026-01-05 00:42:48,680 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-01-05 00:42:48,681 [ scc.merge] INFO 2026-01-05 00:42:48,681 [ scc.merge] INFO Repository: ome/omero-figure 2026-01-05 00:42:48,681 [ scc.merge] INFO Excluded PRs: 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required) 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft) 2026-01-05 00:42:48,681 [ scc.merge] INFO Updating 9cc36cde..88b01ef5 2026-01-05 00:42:48,681 [ scc.merge] INFO Previously merged: 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 650 jburel 'Bump Python version' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-05 00:42:48,681 [ scc.merge] INFO 2026-01-05 00:42:48,681 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2026-01-05 00:42:48,681 [ scc.merge] INFO 2026-01-05 00:42:48,681 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2026-01-05 00:42:48,681 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,681 [ scc.merge] INFO 2026-01-05 00:42:48,681 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:48,681 [ scc.merge] INFO 2026-01-05 00:42:48,681 [ scc.merge] INFO Repository: ome/omero-gallery 2026-01-05 00:42:48,681 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,681 [ scc.merge] INFO 2026-01-05 00:42:48,681 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,681 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-01-05 00:42:48,682 [ scc.merge] INFO 2026-01-05 00:42:48,682 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-01-05 00:42:48,682 [ scc.merge] INFO 2026-01-05 00:42:48,682 [ scc.merge] INFO Repository: ome/omero-iviewer 2026-01-05 00:42:48,682 [ scc.merge] INFO Excluded PRs: 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft) 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure) 2026-01-05 00:42:48,682 [ scc.merge] INFO Updating 7a798ce..5e2de43 2026-01-05 00:42:48,682 [ scc.merge] INFO Previously merged: 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra' 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-05 00:42:48,682 [ scc.merge] INFO 2026-01-05 00:42:48,682 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix' 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 513 jburel 'Bump Python version' 2026-01-05 00:42:48,682 [ scc.merge] INFO 2026-01-05 00:42:48,682 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2026-01-05 00:42:48,682 [ scc.merge] INFO 2026-01-05 00:42:48,682 [ scc.merge] INFO Repository: ome/omero-mapr 2026-01-05 00:42:48,682 [ scc.merge] INFO Excluded PRs: 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2026-01-05 00:42:48,682 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,682 [ scc.merge] INFO 2026-01-05 00:42:48,682 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-05 00:42:48,682 [ scc.merge] INFO 2026-01-05 00:42:48,682 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-05 00:42:48,682 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:48,682 [ scc.merge] INFO 2026-01-05 00:42:48,682 [ scc.merge] INFO Repository: ome/omero-metadata 2026-01-05 00:42:48,682 [ scc.merge] INFO Updating 3cd120c..55060a2 2026-01-05 00:42:48,682 [ scc.merge] INFO Previously merged: 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-05 00:42:48,683 [ scc.merge] INFO 2026-01-05 00:42:48,683 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-01-05 00:42:48,683 [ scc.merge] INFO 2026-01-05 00:42:48,683 [ scc.merge] INFO Repository: ome/omero-parade 2026-01-05 00:42:48,683 [ scc.merge] INFO Excluded PRs: 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2026-01-05 00:42:48,683 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,683 [ scc.merge] INFO 2026-01-05 00:42:48,683 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-05 00:42:48,683 [ scc.merge] INFO 2026-01-05 00:42:48,683 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2026-01-05 00:42:48,683 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,683 [ scc.merge] INFO 2026-01-05 00:42:48,683 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:48,683 [ scc.merge] INFO 2026-01-05 00:42:48,683 [ scc.merge] INFO Repository: ome/omero-rois 2026-01-05 00:42:48,683 [ scc.merge] INFO Excluded PRs: 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-01-05 00:42:48,683 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,683 [ scc.merge] INFO 2026-01-05 00:42:48,683 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions' 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:48,683 [ scc.merge] INFO 2026-01-05 00:42:48,683 [ scc.merge] INFO Repository: ome/omero-signup 2026-01-05 00:42:48,683 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,683 [ scc.merge] INFO 2026-01-05 00:42:48,683 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:48,683 [ scc.merge] INFO 2026-01-05 00:42:48,683 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2026-01-05 00:42:48,683 [ scc.merge] INFO 2026-01-05 00:42:48,683 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2026-01-05 00:42:48,683 [ scc.merge] INFO Excluded PRs: 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) 2026-01-05 00:42:48,683 [ scc.merge] INFO Updating cda3ec6..c8a0015 2026-01-05 00:42:48,683 [ scc.merge] INFO Previously merged: 2026-01-05 00:42:48,683 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' 2026-01-05 00:42:48,684 [ scc.merge] INFO - PR 82 jburel 'Upgrade python' 2026-01-05 00:42:48,684 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container' 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO Repository: ome/omero-upload 2026-01-05 00:42:48,684 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,684 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2026-01-05 00:42:48,684 [ scc.merge] INFO Updating deab817..160d894 2026-01-05 00:42:48,684 [ scc.merge] INFO Previously merged: 2026-01-05 00:42:48,684 [ scc.merge] INFO - PR 20 jburel 'Build' 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,684 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO Repository: ome/omero-web-zarr 2026-01-05 00:42:48,684 [ scc.merge] INFO Excluded PRs: 2026-01-05 00:42:48,684 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2026-01-05 00:42:48,684 [ scc.merge] INFO Updating 8f3c313..4e1e685 2026-01-05 00:42:48,684 [ scc.merge] INFO Previously merged: 2026-01-05 00:42:48,684 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README' 2026-01-05 00:42:48,684 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,684 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-05 00:42:48,684 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2026-01-05 00:42:48,684 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,684 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2026-01-05 00:42:48,684 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,684 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2026-01-05 00:42:48,684 [ scc.merge] INFO Already up to date. 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO 2026-01-05 00:42:48,684 [ scc.merge] INFO Repository: ome/scripts 2026-01-05 00:42:48,685 [ scc.merge] INFO Excluded PRs: 2026-01-05 00:42:48,685 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2026-01-05 00:42:48,685 [ scc.merge] INFO Updating 4b4c755..18a9a75 2026-01-05 00:42:48,685 [ scc.merge] INFO Previously merged: 2026-01-05 00:42:48,685 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label' 2026-01-05 00:42:48,685 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2026-01-05 00:42:48,685 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix' 2026-01-05 00:42:48,685 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2026-01-05 00:42:48,685 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2026-01-05 00:42:48,685 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2026-01-05 00:42:48,685 [ scc.merge] INFO 2026-01-05 00:42:48,685 [ scc.merge] INFO Merged PRs: 2026-01-05 00:42:48,685 [ scc.merge] INFO - PR 231 jburel 'Create Release ' 2026-01-05 00:42:48,685 [ scc.merge] INFO 2026-01-05 00:42:48,685 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-01-05 00:42:48,685 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,687 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-01-05 00:42:48,687 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,689 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,689 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-01-05 00:42:48,689 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,691 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,692 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-01-05 00:42:48,692 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,694 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,694 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-01-05 00:42:48,694 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,696 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,696 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-01-05 00:42:48,696 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,698 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,698 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-01-05 00:42:48,698 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,700 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,700 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-01-05 00:42:48,700 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,702 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,702 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-01-05 00:42:48,702 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,704 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,704 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-01-05 00:42:48,704 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,706 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,706 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-01-05 00:42:48,707 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,709 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,709 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-01-05 00:42:48,709 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,711 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,711 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-01-05 00:42:48,711 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,713 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,713 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-01-05 00:42:48,713 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,715 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,715 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-01-05 00:42:48,715 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,717 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,717 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-01-05 00:42:48,717 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,719 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,719 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-01-05 00:42:48,719 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,721 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,721 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-01-05 00:42:48,721 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,723 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,723 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-01-05 00:42:48,723 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,725 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,725 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-01-05 00:42:48,725 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,727 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,728 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-01-05 00:42:48,728 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,730 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-01-05 00:42:48,730 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,732 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-05 00:42:48,732 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-01-05 00:42:48,732 [ scc.git] DEBUG Calling 'git remote' 2026-01-05 00:42:48,734 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'minimal-omero-client' [detached HEAD 0df8c0b] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798ce nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD efaa190] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-01-05 00:43:34,917 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-01-05 00:43:44,247 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-01-05 00:43:46,679 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-01-05 00:43:51,386 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-01-05 00:44:30,268 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS