00:35:05 Started by upstream project "Trigger" build number 180 00:35:05 originally caused by: 00:35:05 Started by timer 00:35:05 Running as SYSTEM 00:35:05 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 00:35:05 The recommended git tool is: NONE 00:35:05 No credentials specified 00:35:05 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 00:35:05 Fetching changes from the remote Git repository 00:35:05 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 00:35:05 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 00:35:05 > git --version # timeout=10 00:35:05 > git --version # 'git version 2.47.3' 00:35:05 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:35:06 > git rev-parse origin/develop^{commit} # timeout=10 00:35:06 Checking out Revision fe46b79639396fd7473d874736918c245c8a7024 (origin/develop) 00:35:06 > git config core.sparsecheckout # timeout=10 00:35:06 > git checkout -f fe46b79639396fd7473d874736918c245c8a7024 # timeout=30 00:35:06 Commit message: "Merge pull request #6447 from sbesson/OMERO.server_5.6.17_release_notes" 00:35:06 > git rev-list --no-walk fe46b79639396fd7473d874736918c245c8a7024 # timeout=10 00:35:06 Cleaning workspace 00:35:06 > git rev-parse --verify HEAD # timeout=10 00:35:06 Resetting working tree 00:35:06 > git reset --hard # timeout=10 00:35:06 > git clean -fdx # timeout=10 00:35:06 Copied 1 artifact from "OMERO-python-superbuild-build" build number 129 00:35:06 [OMERO-push] $ /bin/bash -xe /tmp/jenkins14324366027840427804.sh 00:35:06 + python3.11 -mvenv venv 00:35:08 + source /home/omero/workspace/OMERO-push/venv/bin/activate 00:35:08 ++ deactivate nondestructive 00:35:08 ++ '[' -n '' ']' 00:35:08 ++ '[' -n '' ']' 00:35:08 ++ hash -r 00:35:08 ++ '[' -n '' ']' 00:35:08 ++ unset VIRTUAL_ENV 00:35:08 ++ unset VIRTUAL_ENV_PROMPT 00:35:08 ++ '[' '!' nondestructive = nondestructive ']' 00:35:08 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 00:35:08 ++ export VIRTUAL_ENV 00:35:08 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:35:08 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:35:08 ++ export PATH 00:35:08 ++ '[' -n '' ']' 00:35:08 ++ '[' -z '' ']' 00:35:08 ++ _OLD_VIRTUAL_PS1= 00:35:08 ++ PS1='(venv) ' 00:35:08 ++ export PS1 00:35:08 ++ VIRTUAL_ENV_PROMPT='(venv) ' 00:35:08 ++ export VIRTUAL_ENV_PROMPT 00:35:08 ++ hash -r 00:35:08 + pip install -U pip 00:35:08 Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.0.1) 00:35:08 + pip install -U scc 00:35:08 Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0) 00:35:08 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1) 00:35:08 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3) 00:35:08 Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0) 00:35:08 Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1) 00:35:08 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7) 00:35:08 Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0) 00:35:08 Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20) 00:35:08 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0) 00:35:08 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2) 00:35:08 Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.33.1) 00:35:08 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.12.1) 00:35:08 Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.15.0) 00:35:08 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (46.0.7) 00:35:08 Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.0.0) 00:35:09 Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0) 00:35:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.7) 00:35:09 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.11) 00:35:09 Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.2.25) 00:35:09 + test -e src 00:35:09 + cd src 00:35:09 ++ git config github.user 00:35:09 + user=snoopycrimecop 00:35:09 + scc merge develop --no-ask --reset --shallow -S success-only 00:35:12 2026-04-26 00:35:12,965 [ scc.merge] INFO Merging Pull Request(s) based on develop 00:35:12 2026-04-26 00:35:12,965 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 00:35:12 2026-04-26 00:35:12,965 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 00:35:12 2026-04-26 00:35:12,965 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 00:35:12 2026-04-26 00:35:12,965 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 00:35:12 2026-04-26 00:35:12,965 [ scc.merge] INFO Excluding Pull Request(s) without successful status 00:35:17 2026-04-26 00:35:17,159 [ scc.merge] INFO Repository: ome/openmicroscopy 00:35:17 2026-04-26 00:35:17,159 [ scc.merge] INFO Excluded PRs: 00:35:17 2026-04-26 00:35:17,159 [ scc.merge] INFO - PR 6450 dominikl 'Add omero-zarr-pixel-buffer' (exclude comment) 00:35:17 2026-04-26 00:35:17,159 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure) 00:35:17 2026-04-26 00:35:17,159 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 00:35:17 2026-04-26 00:35:17,159 [ scc.merge] INFO Already up to date. 00:35:17 2026-04-26 00:35:17,159 [ scc.merge] INFO 00:35:17 2026-04-26 00:35:17,159 [ scc.merge] INFO 00:35:17 + cp etc/omero.properties etc/omero.properties.bak 00:35:17 + rm etc/omero.properties 00:35:17 + touch etc/omero.properties 00:35:17 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 00:35:17 + ne=249 00:35:17 ++ sed -n 1,249p etc/omero.properties.bak 00:35:17 + line='## 00:35:17 ## omero.properties 00:35:17 ## ---------------- 00:35:17 ## 00:35:17 ## DO NOT EDIT! 00:35:17 ## 00:35:17 ## 00:35:17 ## Any of these properties can be altered by using `omero config`. MODIFYING 00:35:17 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 00:35:17 ## at compile time! 00:35:17 ## 00:35:17 ## For an overview of these properties, see 00:35:17 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 00:35:17 ## 00:35:17 ## Properties marked with "DEVELOPMENT" should not be used in production. 00:35:17 00:35:17 # Comma separated list of Ice transports available to clients. The default 00:35:17 # value ("ssl,tcp") instructs Ice to open the ports specified by the 00:35:17 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 00:35:17 # will prevent all non-encrypted connections to the OMERO server. 00:35:17 # 00:35:17 # Additionally, there are two experimental values for using websockets: 00:35:17 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 00:35:17 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 00:35:17 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 00:35:17 # 00:35:17 # Note: When using websockets behind a web server like nginx, additional 00:35:17 # configuration may be needed. 00:35:17 omero.client.icetransports=ssl,tcp 00:35:17 00:35:17 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 00:35:17 # server 00:35:17 omero.ports.prefix= 00:35:17 00:35:17 # The Glacier2 SSL port number to use 00:35:17 omero.ports.ssl=4064 00:35:17 00:35:17 # The Glacier2 TCP port number to use (unencrypted) 00:35:17 omero.ports.tcp=4063 00:35:17 00:35:17 # The Glacier2 WSS port number to use 00:35:17 omero.ports.wss=4066 00:35:17 00:35:17 # The Glacier2 WS port number to use (unencrypted) 00:35:17 omero.ports.ws=4065 00:35:17 00:35:17 # The IceGrid registry port number to use 00:35:17 omero.ports.registry=4061 00:35:17 00:35:17 ############################################# 00:35:17 ## JVM configuration 00:35:17 ## 00:35:17 ## Note: changes to the omero.jvmcfg properties 00:35:17 ## will *not* be reflected in OMERO.server 00:35:17 ## since they are defined in OMERO.py. 00:35:17 ############################################# 00:35:17 ## (For documentation only) 00:35:17 # Memory strategy which will be used by default. 00:35:17 # Options include: percent, manual 00:35:17 omero.jvmcfg.strategy=percent 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Explicit value for the `-Xmx` argument, e.g. 00:35:17 # "1g" 00:35:17 omero.jvmcfg.heap_size= 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Explicit value for the MaxPermSize argument 00:35:17 # to the JVM, e.g. "500M". Ignored for Java8+ 00:35:17 omero.jvmcfg.perm_gen= 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Toggles on or off heap dumps on OOMs. Default is "off". 00:35:17 # The special value "tmp" will create the heap dumps in 00:35:17 # your temp directory. 00:35:17 omero.jvmcfg.heap_dump= 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Used only by the percent strategy. An integer between 0 00:35:17 # and 100 which is the percent of active memory that will 00:35:17 # be used by the service. 00:35:17 omero.jvmcfg.percent= 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Contains other parameters which should be passed to the 00:35:17 # JVM. The value of "append" is treated as if it were on 00:35:17 # the command line so will be separated on whitespace. 00:35:17 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 00:35:17 # results in two new arguments. 00:35:17 # Note that when using `config set` from the command line 00:35:17 # one may need to give a prior `--` option to prevent a value 00:35:17 # starting with `-` from already being parsed as an option, 00:35:17 # and values may need quoting to prevent whitespace or other 00:35:17 # significant characters from being interpreted prematurely. 00:35:17 00:35:17 omero.jvmcfg.append= 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Manual override of the total system memory that 00:35:17 # OMERO will *think* is present on the local OS (MB). 00:35:17 # If unset, an attempt will be made to detect the actual 00:35:17 # amount: first by using the Python library `psutil` and 00:35:17 # if that is not installed, by running a Java tool. If 00:35:17 # neither works, 4.0GB is assumed. 00:35:17 omero.jvmcfg.system_memory= 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Suggestion for strategies as to the minimum memory 00:35:17 # that they will use for calculating JVM settings (MB). 00:35:17 omero.jvmcfg.min_system_memory=3414 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Suggestion for strategies as to the maximum memory 00:35:17 # that they will use for calculating JVM settings (MB). 00:35:17 omero.jvmcfg.max_system_memory=48000 00:35:17 00:35:17 00:35:17 ############################################# 00:35:17 ## Logging properties 00:35:17 ## 00:35:17 ## Note: changes to the default omero.logging values in 00:35:17 ## this file will *not* be reflected in OMERO.server 00:35:17 ## since they are defined in OMERO.py 00:35:17 ############################################# 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Relative server directory where the log files should be stored. 00:35:17 omero.logging.directory=var/log/ 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Whether the server log files should be rotated at a certain time 00:35:17 # interval. If true, log files will be rolled over at midnight. 00:35:17 # Otherwise, log files will be rolled over at a predetermined size, 00:35:17 # see omero.logging.logsize for more information. 00:35:17 omero.logging.timedlog=false 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # If omero.logging.timedlog is false or unset, specifies the 00:35:17 # maximum size of the server log files in bytes above which a 00:35:17 # new log file should be created. 00:35:17 omero.logging.logsize=5000000 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # If omero.logging.timedlog is false or unset, specifies the 00:35:17 # number of old server log files that should be kept. Old log 00:35:17 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 00:35:17 omero.logging.lognum=9 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Specifies the threshold for the Python servers log files. Logging messages 00:35:17 # which are less severe than this value will be ignored. For a list of 00:35:17 # available values, see https://docs.python.org/3/library/logging.html#levels. 00:35:17 omero.logging.level=20 00:35:17 00:35:17 ############################################# 00:35:17 ## Ice overrides 00:35:17 ## 00:35:17 ## Though not used directly by OMERO, a number 00:35:17 ## of properties prefixed with "Ice.*" will 00:35:17 ## alter the behavior of the OMERO runtime 00:35:17 ## by configuring the Ice communicators. For a 00:35:17 ## full listing see: 00:35:17 ## 00:35:17 ## http://doc.zeroc.com/display/Ice/Property+Reference 00:35:17 ## For more information see 00:35:17 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 00:35:17 ############################################# 00:35:17 00:35:17 # Disable IPv6 by setting to 0. Only needed in 00:35:17 # certain situations. 00:35:17 Ice.IPv6=1 00:35:17 00:35:17 # Glacier2Template IceSSL defaults and overrides, 00:35:17 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 00:35:17 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 00:35:17 # update the corresponding IceSSL. property. 00:35:17 omero.glacier2.IceSSL= 00:35:17 00:35:17 # Glacier2Template SSL maximum allowed protocol (mac bug) 00:35:17 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 00:35:17 # Glacier2Template SSL allowed cipher suites 00:35:17 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 00:35:17 # Glacier2Template SSL verification requirements 00:35:17 omero.glacier2.IceSSL.VerifyPeer=0 00:35:17 # Glacier2Template SSL allowed protocols 00:35:17 omero.glacier2.IceSSL.Protocols=tls1 00:35:17 00:35:17 # Override the default set of OMERO services. 00:35:17 # For example, to run OMERO.server with Blitz and Tables only 00:35:17 # (i.e. disable Processor, DropBox, Indexer, PixelData) 00:35:17 # set this to ``master:Blitz-0,Tables-0``. 00:35:17 # Also use this to distribute OMERO services across multiple nodes, 00:35:17 # for example: 00:35:17 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 00:35:17 # See 00:35:17 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 00:35:17 omero.server.nodedescriptors= 00:35:17 00:35:17 ############################################# 00:35:17 ## Darwin (OS X) specific defaults for templated configuration files only. 00:35:17 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 00:35:17 ## file. 00:35:17 ## Do not set these properties in ``omero config``, instead set the original 00:35:17 ## ``xxx.yyy`` property 00:35:17 ############################################# 00:35:17 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Name of the Python module to use when starting the Tables service 00:35:17 omero.tables.module=runTables 00:35:17 00:35:17 ############################################# 00:35:17 ## Server product name for release artifacts 00:35:17 ############################################# 00:35:17 product.name=OMERO.server 00:35:17 00:35:17 ############################################# 00:35:17 ### Properties below this marker are ignored by 00:35:17 ### omero.install.config_parser.PropertyParser 00:35:17 ### END 00:35:17 00:35:17 ############################################# 00:35:17 ## Library versions 00:35:17 ############################################# 00:35:17 ## 00:35:17 versions.findbugs=1.2.1 00:35:17 versions.ice36=3.6.5 00:35:17 versions.ice36_lib=36 00:35:17 ## internal 00:35:17 versions.omeroshares36=3.6.3 00:35:17 versions.omeromock36=3.6.3 00:35:17 versions.icedb36=3.6.3 00:35:17 versions.ipython=1.2.1 00:35:17 00:35:17 versions.janino=2.5.10 00:35:17 00:35:17 versions.reportng=1.1.1 00:35:17 00:35:17 versions.testng=7.5 00:35:17 versions.velocity=1.4 00:35:17 00:35:17 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 00:35:17 versions.omero-scripts-url=${versions.omero-pypi} 00:35:17 00:35:17 ### 00:35:17 ### Appended Values 00:35:17 ### 00:35:17 00:35:17 ## Internal dependencies' 00:35:17 + echo '## 00:35:17 ## omero.properties 00:35:17 ## ---------------- 00:35:17 ## 00:35:17 ## DO NOT EDIT! 00:35:17 ## 00:35:17 ## 00:35:17 ## Any of these properties can be altered by using `omero config`. MODIFYING 00:35:17 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 00:35:17 ## at compile time! 00:35:17 ## 00:35:17 ## For an overview of these properties, see 00:35:17 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 00:35:17 ## 00:35:17 ## Properties marked with "DEVELOPMENT" should not be used in production. 00:35:17 00:35:17 # Comma separated list of Ice transports available to clients. The default 00:35:17 # value ("ssl,tcp") instructs Ice to open the ports specified by the 00:35:17 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 00:35:17 # will prevent all non-encrypted connections to the OMERO server. 00:35:17 # 00:35:17 # Additionally, there are two experimental values for using websockets: 00:35:17 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 00:35:17 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 00:35:17 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 00:35:17 # 00:35:17 # Note: When using websockets behind a web server like nginx, additional 00:35:17 # configuration may be needed. 00:35:17 omero.client.icetransports=ssl,tcp 00:35:17 00:35:17 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 00:35:17 # server 00:35:17 omero.ports.prefix= 00:35:17 00:35:17 # The Glacier2 SSL port number to use 00:35:17 omero.ports.ssl=4064 00:35:17 00:35:17 # The Glacier2 TCP port number to use (unencrypted) 00:35:17 omero.ports.tcp=4063 00:35:17 00:35:17 # The Glacier2 WSS port number to use 00:35:17 omero.ports.wss=4066 00:35:17 00:35:17 # The Glacier2 WS port number to use (unencrypted) 00:35:17 omero.ports.ws=4065 00:35:17 00:35:17 # The IceGrid registry port number to use 00:35:17 omero.ports.registry=4061 00:35:17 00:35:17 ############################################# 00:35:17 ## JVM configuration 00:35:17 ## 00:35:17 ## Note: changes to the omero.jvmcfg properties 00:35:17 ## will *not* be reflected in OMERO.server 00:35:17 ## since they are defined in OMERO.py. 00:35:17 ############################################# 00:35:17 ## (For documentation only) 00:35:17 # Memory strategy which will be used by default. 00:35:17 # Options include: percent, manual 00:35:17 omero.jvmcfg.strategy=percent 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Explicit value for the `-Xmx` argument, e.g. 00:35:17 # "1g" 00:35:17 omero.jvmcfg.heap_size= 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Explicit value for the MaxPermSize argument 00:35:17 # to the JVM, e.g. "500M". Ignored for Java8+ 00:35:17 omero.jvmcfg.perm_gen= 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Toggles on or off heap dumps on OOMs. Default is "off". 00:35:17 # The special value "tmp" will create the heap dumps in 00:35:17 # your temp directory. 00:35:17 omero.jvmcfg.heap_dump= 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Used only by the percent strategy. An integer between 0 00:35:17 # and 100 which is the percent of active memory that will 00:35:17 # be used by the service. 00:35:17 omero.jvmcfg.percent= 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Contains other parameters which should be passed to the 00:35:17 # JVM. The value of "append" is treated as if it were on 00:35:17 # the command line so will be separated on whitespace. 00:35:17 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 00:35:17 # results in two new arguments. 00:35:17 # Note that when using `config set` from the command line 00:35:17 # one may need to give a prior `--` option to prevent a value 00:35:17 # starting with `-` from already being parsed as an option, 00:35:17 # and values may need quoting to prevent whitespace or other 00:35:17 # significant characters from being interpreted prematurely. 00:35:17 00:35:17 omero.jvmcfg.append= 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Manual override of the total system memory that 00:35:17 # OMERO will *think* is present on the local OS (MB). 00:35:17 # If unset, an attempt will be made to detect the actual 00:35:17 # amount: first by using the Python library `psutil` and 00:35:17 # if that is not installed, by running a Java tool. If 00:35:17 # neither works, 4.0GB is assumed. 00:35:17 omero.jvmcfg.system_memory= 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Suggestion for strategies as to the minimum memory 00:35:17 # that they will use for calculating JVM settings (MB). 00:35:17 omero.jvmcfg.min_system_memory=3414 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Suggestion for strategies as to the maximum memory 00:35:17 # that they will use for calculating JVM settings (MB). 00:35:17 omero.jvmcfg.max_system_memory=48000 00:35:17 00:35:17 00:35:17 ############################################# 00:35:17 ## Logging properties 00:35:17 ## 00:35:17 ## Note: changes to the default omero.logging values in 00:35:17 ## this file will *not* be reflected in OMERO.server 00:35:17 ## since they are defined in OMERO.py 00:35:17 ############################################# 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Relative server directory where the log files should be stored. 00:35:17 omero.logging.directory=var/log/ 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Whether the server log files should be rotated at a certain time 00:35:17 # interval. If true, log files will be rolled over at midnight. 00:35:17 # Otherwise, log files will be rolled over at a predetermined size, 00:35:17 # see omero.logging.logsize for more information. 00:35:17 omero.logging.timedlog=false 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # If omero.logging.timedlog is false or unset, specifies the 00:35:17 # maximum size of the server log files in bytes above which a 00:35:17 # new log file should be created. 00:35:17 omero.logging.logsize=5000000 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # If omero.logging.timedlog is false or unset, specifies the 00:35:17 # number of old server log files that should be kept. Old log 00:35:17 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 00:35:17 omero.logging.lognum=9 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Specifies the threshold for the Python servers log files. Logging messages 00:35:17 # which are less severe than this value will be ignored. For a list of 00:35:17 # available values, see https://docs.python.org/3/library/logging.html#levels. 00:35:17 omero.logging.level=20 00:35:17 00:35:17 ############################################# 00:35:17 ## Ice overrides 00:35:17 ## 00:35:17 ## Though not used directly by OMERO, a number 00:35:17 ## of properties prefixed with "Ice.*" will 00:35:17 ## alter the behavior of the OMERO runtime 00:35:17 ## by configuring the Ice communicators. For a 00:35:17 ## full listing see: 00:35:17 ## 00:35:17 ## http://doc.zeroc.com/display/Ice/Property+Reference 00:35:17 ## For more information see 00:35:17 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 00:35:17 ############################################# 00:35:17 00:35:17 # Disable IPv6 by setting to 0. Only needed in 00:35:17 # certain situations. 00:35:17 Ice.IPv6=1 00:35:17 00:35:17 # Glacier2Template IceSSL defaults and overrides, 00:35:17 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 00:35:17 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 00:35:17 # update the corresponding IceSSL. property. 00:35:17 omero.glacier2.IceSSL= 00:35:17 00:35:17 # Glacier2Template SSL maximum allowed protocol (mac bug) 00:35:17 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 00:35:17 # Glacier2Template SSL allowed cipher suites 00:35:17 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 00:35:17 # Glacier2Template SSL verification requirements 00:35:17 omero.glacier2.IceSSL.VerifyPeer=0 00:35:17 # Glacier2Template SSL allowed protocols 00:35:17 omero.glacier2.IceSSL.Protocols=tls1 00:35:17 00:35:17 # Override the default set of OMERO services. 00:35:17 # For example, to run OMERO.server with Blitz and Tables only 00:35:17 # (i.e. disable Processor, DropBox, Indexer, PixelData) 00:35:17 # set this to ``master:Blitz-0,Tables-0``. 00:35:17 # Also use this to distribute OMERO services across multiple nodes, 00:35:17 # for example: 00:35:17 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 00:35:17 # See 00:35:17 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 00:35:17 omero.server.nodedescriptors= 00:35:17 00:35:17 ############################################# 00:35:17 ## Darwin (OS X) specific defaults for templated configuration files only. 00:35:17 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 00:35:17 ## file. 00:35:17 ## Do not set these properties in ``omero config``, instead set the original 00:35:17 ## ``xxx.yyy`` property 00:35:17 ############################################# 00:35:17 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 00:35:17 00:35:17 ## (For documentation only) 00:35:17 # Name of the Python module to use when starting the Tables service 00:35:17 omero.tables.module=runTables 00:35:17 00:35:17 ############################################# 00:35:17 ## Server product name for release artifacts 00:35:17 ############################################# 00:35:17 product.name=OMERO.server 00:35:17 00:35:17 ############################################# 00:35:17 ### Properties below this marker are ignored by 00:35:17 ### omero.install.config_parser.PropertyParser 00:35:17 ### END 00:35:17 00:35:17 ############################################# 00:35:17 ## Library versions 00:35:17 ############################################# 00:35:17 ## 00:35:17 versions.findbugs=1.2.1 00:35:17 versions.ice36=3.6.5 00:35:17 versions.ice36_lib=36 00:35:17 ## internal 00:35:17 versions.omeroshares36=3.6.3 00:35:17 versions.omeromock36=3.6.3 00:35:17 versions.icedb36=3.6.3 00:35:17 versions.ipython=1.2.1 00:35:17 00:35:17 versions.janino=2.5.10 00:35:17 00:35:17 versions.reportng=1.1.1 00:35:17 00:35:17 versions.testng=7.5 00:35:17 versions.velocity=1.4 00:35:17 00:35:17 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 00:35:17 versions.omero-scripts-url=${versions.omero-pypi} 00:35:17 00:35:17 ### 00:35:17 ### Appended Values 00:35:17 ### 00:35:17 00:35:17 ## Internal dependencies' 00:35:17 + echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 00:35:17 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 00:35:17 + echo versions.scripts-prefix= 00:35:17 + echo versions.scripts=merge_ci 00:35:17 + cat /home/omero/workspace/OMERO-push/version.properties 00:35:17 + git commit -a -m 'Add version.properties to etc/omero.properties' 00:35:17 [detached HEAD d103793b26] Add version.properties to etc/omero.properties 00:35:17 1 file changed, 46 insertions(+), 6 deletions(-) 00:35:17 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 00:35:18 To github.com:snoopycrimecop/openmicroscopy.git 00:35:18 + 2425036b14...d103793b26 HEAD -> merge_ci (forced update) 00:35:18 Finished: SUCCESS