00:50:44 Started by upstream project "Trigger" build number 80
00:50:44 originally caused by:
00:50:44 Started by timer
00:50:44 Running as SYSTEM
00:50:45 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:50:46 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7307408580063710839.sh
00:50:46 + source /home/settings.env
00:50:46 ++ OMERO_DB_HOST=pg
00:50:46 ++ OMERO_DB_USER=postgres
00:50:46 ++ OMERO_DB_PASS=
00:50:46 ++ OMERO_ROOT_PASS=omero
00:50:46 ++ OMERO_DATA_DIR=/OMERO
00:50:46 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:50:46 + OMERO_DB_NAME=OMERO-server
00:50:46 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:50:46 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:50:46 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:50:46 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:50:46 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:50:46 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:50:46 ++ deactivate nondestructive
00:50:46 ++ '[' -n '' ']'
00:50:46 ++ '[' -n '' ']'
00:50:46 ++ hash -r
00:50:46 ++ '[' -n '' ']'
00:50:46 ++ unset VIRTUAL_ENV
00:50:46 ++ unset VIRTUAL_ENV_PROMPT
00:50:46 ++ '[' '!' nondestructive = nondestructive ']'
00:50:46 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:50:46 ++ export VIRTUAL_ENV
00:50:46 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:50:46 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:50:46 ++ export PATH
00:50:46 ++ '[' -n '' ']'
00:50:46 ++ '[' -z '' ']'
00:50:46 ++ _OLD_VIRTUAL_PS1=
00:50:46 ++ PS1='(.venv3) '
00:50:46 ++ export PS1
00:50:46 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:50:46 ++ export VIRTUAL_ENV_PROMPT
00:50:46 ++ hash -r
00:50:46 + omero admin stop
00:51:22 Server not running
00:51:22 + echo not running
00:51:22 not running
00:51:22 + sleep 5
00:51:27 + deactivate
00:51:27 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:51:27 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:51:27 + export PATH
00:51:27 + unset _OLD_VIRTUAL_PATH
00:51:27 + '[' -n '' ']'
00:51:27 + hash -r
00:51:27 + '[' -n '' ']'
00:51:27 + unset VIRTUAL_ENV
00:51:27 + unset VIRTUAL_ENV_PROMPT
00:51:27 + '[' '!' '' = nondestructive ']'
00:51:27 + unset -f deactivate
00:51:27 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:51:28 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:51:33 + '[' false = true ']'
00:51:33 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:51:33 Skipping PURGE_DATA:CleanDbAndRepo
00:51:33 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:51:35 Copied 1 artifact from "OMERO-build" build number 57
00:51:35 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 53
00:51:35 Copied 2 artifacts from "OMERO-build-build" build number 57
00:51:35 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 51
00:51:35 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1120584935080882299.sh
00:51:35 + source /home/settings.env
00:51:35 ++ OMERO_DB_HOST=pg
00:51:35 ++ OMERO_DB_USER=postgres
00:51:35 ++ OMERO_DB_PASS=
00:51:35 ++ OMERO_ROOT_PASS=omero
00:51:35 ++ OMERO_DATA_DIR=/OMERO
00:51:35 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:51:35 + OMERO_DB_NAME=OMERO-server
00:51:35 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:51:35 + mkdir -p /home/omero/omero-server-data
00:51:35 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:51:35 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:51:35 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:51:35 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:51:35 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:51:35 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:51:35 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:51:35 ++ ls OMERO.server-5.6.3-594-5c840ba44e-ice36-b57.zip
00:51:35 + ZIP=OMERO.server-5.6.3-594-5c840ba44e-ice36-b57.zip
00:51:35 + '[' '!' -z '' ']'
00:51:35 + DIST=OMERO.server-5.6.3-594-5c840ba44e-ice36-b57
00:51:35 + unzip OMERO.server-5.6.3-594-5c840ba44e-ice36-b57.zip
00:51:35 Archive: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57.zip
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/blitz/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/grid/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/profiles/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/templates/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/templates/error/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/templates/grid/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/luts/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/luts/janelia/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/luts/matplotlib/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/luts/ncsa_paledit/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/luts/seaborn/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/luts/wcif/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/omero/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/omero/analysis_scripts/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/omero/annotation_scripts/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/omero/export_scripts/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/omero/figure_scripts/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/omero/import_scripts/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/scripts/omero/util_scripts/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/server/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/share/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/share/licenses/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/misc/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3A__1/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3A__10/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3A__11/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3A__2/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3A__3/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3A__4/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3A__5/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3A__6/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3A__7/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3A__8/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3A__9/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3__4/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3__5/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3__6/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO3__7/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO4.1__0/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO4.2__0/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO4.2__0/t/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO4.3__0/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO4.4__0/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO4__0/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.0__0/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.1__1/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.2__0/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.3__0/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4DEV__1/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4DEV__2/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4DEV__3/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4__0/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/var/
00:51:35 creating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/var/tmp/
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/LICENSE.txt
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/backup.cfg
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/blitz/mail-senders.example
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/blitz/mail-server.example
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/build.properties
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/env.bat
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/env.sh
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/hibernate.properties
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/ice.config
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/logback-cli.xml
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/logback-indexing-cli.xml
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/logback-indexing.xml
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/logback.xml
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/mime.types
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/node1.cfg
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/node2.cfg
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/omero.properties
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/profiles/psql
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/rollover.cfg
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/templates/Windows.cfg
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/templates/error/maintainance.html
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/templates/grid/README
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/templates/grid/default.xml
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/templates/grid/templates.xml
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/templates/grid/windefault.xml
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/templates/ice.config
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/templates/internal.cfg
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/templates/master.cfg
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/templates/robot.template
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/etc/testdropbox.config
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/history.rst
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/OMEZarrReader.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/accessors-smart.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/activation.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/aggdesigner-algorithm.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/aircompressor.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/antlr.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/aopalliance.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/apiguardian-api.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/asm.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/avatica-core.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/avatica-metrics.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/aws-java-sdk-core.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/aws-java-sdk-kms.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/aws-java-sdk-s3.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/base.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-anim.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-awt-util.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-bridge.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-codec.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-constants.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-css.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-dom.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-ext.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-gvt.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-i18n.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-parser.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-script.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-shared-resources.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-svg-dom.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-svggen.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-transcoder.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-util.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/batik-xml.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/btm.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/calcite-core.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/calcite-linq4j.jar
00:51:35 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/lib/client/cdm-core.jar
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00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4__0/psql-footer.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4__0/psql-header.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4__0/schema.sql
00:51:37 inflating: OMERO.server-5.6.3-594-5c840ba44e-ice36-b57/sql/psql/OMERO5.4__0/views.sql
00:51:37 + rm -f OMERO.server-5.6.3-594-5c840ba44e-ice36-b57.zip
00:51:37 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-594-5c840ba44e-ice36-b57 /home/omero/workspace/OMERO-server/OMERO.server
00:51:37 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
00:51:37 + awsSdkVersion=2.34.6
00:51:37 + jacksonVersion=2.20.0
00:51:37 + logbackVersion=1.3.14
00:51:37 + zarrJavaVersion=0.0.10
00:51:37 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:51:38 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:38 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:38 --2026-02-18 00:51:38-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:51:39 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:39 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:39 HTTP request sent, awaiting response... 200 OK
00:51:39 Length: 4083366 (3.9M) [application/java-archive]
00:51:39 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:51:39
00:51:39 0K .......... .......... .......... .......... .......... 1% 35.7M 0s
00:51:39 50K .......... .......... .......... .......... .......... 2% 3.52M 1s
00:51:39 100K .......... .......... .......... .......... .......... 3% 70.1M 0s
00:51:39 150K .......... .......... .......... .......... .......... 5% 3.75M 1s
00:51:39 200K .......... .......... .......... .......... .......... 6% 175M 0s
00:51:39 250K .......... .......... .......... .......... .......... 7% 44.0M 0s
00:51:39 300K .......... .......... .......... .......... .......... 8% 318M 0s
00:51:39 350K .......... .......... .......... .......... .......... 10% 57.9M 0s
00:51:39 400K .......... .......... .......... .......... .......... 11% 4.16M 0s
00:51:39 450K .......... .......... .......... .......... .......... 12% 56.9M 0s
00:51:39 500K .......... .......... .......... .......... .......... 13% 278M 0s
00:51:39 550K .......... .......... .......... .......... .......... 15% 47.5M 0s
00:51:39 600K .......... .......... .......... .......... .......... 16% 116M 0s
00:51:39 650K .......... .......... .......... .......... .......... 17% 4.35M 0s
00:51:39 700K .......... .......... .......... .......... .......... 18% 49.9M 0s
00:51:39 750K .......... .......... .......... .......... .......... 20% 188M 0s
00:51:39 800K .......... .......... .......... .......... .......... 21% 57.5M 0s
00:51:39 850K .......... .......... .......... .......... .......... 22% 122M 0s
00:51:39 900K .......... .......... .......... .......... .......... 23% 4.38M 0s
00:51:39 950K .......... .......... .......... .......... .......... 25% 302M 0s
00:51:39 1000K .......... .......... .......... .......... .......... 26% 49.4M 0s
00:51:39 1050K .......... .......... .......... .......... .......... 27% 49.1M 0s
00:51:39 1100K .......... .......... .......... .......... .......... 28% 134M 0s
00:51:39 1150K .......... .......... .......... .......... .......... 30% 4.42M 0s
00:51:39 1200K .......... .......... .......... .......... .......... 31% 35.8M 0s
00:51:39 1250K .......... .......... .......... .......... .......... 32% 60.5M 0s
00:51:39 1300K .......... .......... .......... .......... .......... 33% 94.2M 0s
00:51:39 1350K .......... .......... .......... .......... .......... 35% 292M 0s
00:51:39 1400K .......... .......... .......... .......... .......... 36% 4.54M 0s
00:51:39 1450K .......... .......... .......... .......... .......... 37% 29.6M 0s
00:51:39 1500K .......... .......... .......... .......... .......... 38% 17.7M 0s
00:51:39 1550K .......... .......... .......... .......... .......... 40% 24.4M 0s
00:51:39 1600K .......... .......... .......... .......... .......... 41% 26.6M 0s
00:51:39 1650K .......... .......... .......... .......... .......... 42% 13.9M 0s
00:51:39 1700K .......... .......... .......... .......... .......... 43% 14.3M 0s
00:51:39 1750K .......... .......... .......... .......... .......... 45% 17.0M 0s
00:51:39 1800K .......... .......... .......... .......... .......... 46% 25.5M 0s
00:51:39 1850K .......... .......... .......... .......... .......... 47% 25.3M 0s
00:51:39 1900K .......... .......... .......... .......... .......... 48% 14.4M 0s
00:51:39 1950K .......... .......... .......... .......... .......... 50% 13.9M 0s
00:51:39 2000K .......... .......... .......... .......... .......... 51% 25.6M 0s
00:51:39 2050K .......... .......... .......... .......... .......... 52% 24.4M 0s
00:51:39 2100K .......... .......... .......... .......... .......... 53% 25.6M 0s
00:51:39 2150K .......... .......... .......... .......... .......... 55% 11.2M 0s
00:51:39 2200K .......... .......... .......... .......... .......... 56% 14.5M 0s
00:51:39 2250K .......... .......... .......... .......... .......... 57% 23.7M 0s
00:51:39 2300K .......... .......... .......... .......... .......... 58% 24.9M 0s
00:51:39 2350K .......... .......... .......... .......... .......... 60% 25.3M 0s
00:51:39 2400K .......... .......... .......... .......... .......... 61% 11.6M 0s
00:51:39 2450K .......... .......... .......... .......... .......... 62% 11.8M 0s
00:51:39 2500K .......... .......... .......... .......... .......... 63% 31.2M 0s
00:51:39 2550K .......... .......... .......... .......... .......... 65% 25.0M 0s
00:51:39 2600K .......... .......... .......... .......... .......... 66% 24.8M 0s
00:51:39 2650K .......... .......... .......... .......... .......... 67% 26.5M 0s
00:51:39 2700K .......... .......... .......... .......... .......... 68% 8.92M 0s
00:51:39 2750K .......... .......... .......... .......... .......... 70% 19.6M 0s
00:51:39 2800K .......... .......... .......... .......... .......... 71% 25.6M 0s
00:51:39 2850K .......... .......... .......... .......... .......... 72% 25.1M 0s
00:51:39 2900K .......... .......... .......... .......... .......... 73% 24.9M 0s
00:51:39 2950K .......... .......... .......... .......... .......... 75% 8.00M 0s
00:51:39 3000K .......... .......... .......... .......... .......... 76% 27.5M 0s
00:51:39 3050K .......... .......... .......... .......... .......... 77% 35.2M 0s
00:51:39 3100K .......... .......... .......... .......... .......... 78% 24.8M 0s
00:51:39 3150K .......... .......... .......... .......... .......... 80% 18.0M 0s
00:51:39 3200K .......... .......... .......... .......... .......... 81% 13.9M 0s
00:51:39 3250K .......... .......... .......... .......... .......... 82% 12.7M 0s
00:51:39 3300K .......... .......... .......... .......... .......... 84% 31.9M 0s
00:51:39 3350K .......... .......... .......... .......... .......... 85% 17.3M 0s
00:51:39 3400K .......... .......... .......... .......... .......... 86% 21.7M 0s
00:51:39 3450K .......... .......... .......... .......... .......... 87% 15.3M 0s
00:51:39 3500K .......... .......... .......... .......... .......... 89% 12.7M 0s
00:51:39 3550K .......... .......... .......... .......... .......... 90% 21.5M 0s
00:51:39 3600K .......... .......... .......... .......... .......... 91% 21.3M 0s
00:51:39 3650K .......... .......... .......... .......... .......... 92% 25.6M 0s
00:51:39 3700K .......... .......... .......... .......... .......... 94% 27.8M 0s
00:51:39 3750K .......... .......... .......... .......... .......... 95% 9.02M 0s
00:51:39 3800K .......... .......... .......... .......... .......... 96% 21.2M 0s
00:51:39 3850K .......... .......... .......... .......... .......... 97% 21.8M 0s
00:51:39 3900K .......... .......... .......... .......... .......... 99% 26.2M 0s
00:51:39 3950K .......... .......... .......... ....... 100% 18.9M=0.2s
00:51:39
00:51:39 2026-02-18 00:51:39 (16.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:51:39
00:51:39 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:51:39 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:39 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:39 --2026-02-18 00:51:39-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:51:39 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:39 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:39 HTTP request sent, awaiting response... 200 OK
00:51:39 Length: 234962 (229K) [application/java-archive]
00:51:39 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:51:39
00:51:39 0K .......... .......... .......... .......... .......... 21% 31.9M 0s
00:51:39 50K .......... .......... .......... .......... .......... 43% 3.34M 0s
00:51:39 100K .......... .......... .......... .......... .......... 65% 3.69M 0s
00:51:39 150K .......... .......... .......... .......... .......... 87% 54.5M 0s
00:51:39 200K .......... .......... ......... 100% 130M=0.03s
00:51:39
00:51:39 2026-02-18 00:51:39 (7.35 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:51:39
00:51:39 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:51:39 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:39 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:39 --2026-02-18 00:51:39-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:51:39 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:39 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:39 HTTP request sent, awaiting response... 200 OK
00:51:40 Length: 192161 (188K) [application/java-archive]
00:51:40 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:51:40
00:51:40 0K .......... .......... .......... .......... .......... 26% 36.7M 0s
00:51:40 50K .......... .......... .......... .......... .......... 53% 3.58M 0s
00:51:40 100K .......... .......... .......... .......... .......... 79% 110M 0s
00:51:40 150K .......... .......... .......... ....... 100% 2.81M=0.03s
00:51:40
00:51:40 2026-02-18 00:51:40 (6.42 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:51:40
00:51:40 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:51:40 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:40 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:40 --2026-02-18 00:51:40-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:51:40 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:51:40 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:40 HTTP request sent, awaiting response... 200 OK
00:51:40 Length: 1037104 (1013K) [application/java-archive]
00:51:40 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:51:40
00:51:40 0K .......... .......... .......... .......... .......... 4% 3.58M 0s
00:51:40 50K .......... .......... .......... .......... .......... 9% 7.72M 0s
00:51:40 100K .......... .......... .......... .......... .......... 14% 5.10M 0s
00:51:40 150K .......... .......... .......... .......... .......... 19% 9.26M 0s
00:51:40 200K .......... .......... .......... .......... .......... 24% 12.8M 0s
00:51:40 250K .......... .......... .......... .......... .......... 29% 12.3M 0s
00:51:40 300K .......... .......... .......... .......... .......... 34% 15.1M 0s
00:51:40 350K .......... .......... .......... .......... .......... 39% 19.6M 0s
00:51:40 400K .......... .......... .......... .......... .......... 44% 24.9M 0s
00:51:40 450K .......... .......... .......... .......... .......... 49% 17.2M 0s
00:51:40 500K .......... .......... .......... .......... .......... 54% 12.6M 0s
00:51:40 550K .......... .......... .......... .......... .......... 59% 31.1M 0s
00:51:40 600K .......... .......... .......... .......... .......... 64% 17.5M 0s
00:51:40 650K .......... .......... .......... .......... .......... 69% 13.8M 0s
00:51:40 700K .......... .......... .......... .......... .......... 74% 23.9M 0s
00:51:40 750K .......... .......... .......... .......... .......... 78% 13.3M 0s
00:51:40 800K .......... .......... .......... .......... .......... 83% 20.4M 0s
00:51:40 850K .......... .......... .......... .......... .......... 88% 27.3M 0s
00:51:40 900K .......... .......... .......... .......... .......... 93% 13.8M 0s
00:51:40 950K .......... .......... .......... .......... .......... 98% 19.8M 0s
00:51:40 1000K .......... .. 100% 162M=0.08s
00:51:40
00:51:40 2026-02-18 00:51:40 (12.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:51:40
00:51:40 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:51:40 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:40 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:40 --2026-02-18 00:51:40-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:51:40 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:40 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:40 HTTP request sent, awaiting response... 200 OK
00:51:40 Length: 33040 (32K) [application/java-archive]
00:51:40 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:51:40
00:51:40 0K .......... .......... .......... .. 100% 30.6M=0.001s
00:51:40
00:51:40 2026-02-18 00:51:40 (30.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:51:40
00:51:40 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:51:40 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:40 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:40 --2026-02-18 00:51:40-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:51:40 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:40 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:40 HTTP request sent, awaiting response... 200 OK
00:51:40 Length: 13758 (13K) [application/java-archive]
00:51:40 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:51:40
00:51:40 0K .......... ... 100% 15.9M=0.001s
00:51:40
00:51:40 2026-02-18 00:51:40 (15.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:51:40
00:51:40 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:51:40 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:40 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:40 --2026-02-18 00:51:40-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:51:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:41 HTTP request sent, awaiting response... 200 OK
00:51:41 Length: 962220 (940K) [application/java-archive]
00:51:41 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:51:41
00:51:41 0K .......... .......... .......... .......... .......... 5% 34.1M 0s
00:51:41 50K .......... .......... .......... .......... .......... 10% 3.56M 0s
00:51:41 100K .......... .......... .......... .......... .......... 15% 82.8M 0s
00:51:41 150K .......... .......... .......... .......... .......... 21% 3.73M 0s
00:51:41 200K .......... .......... .......... .......... .......... 26% 171M 0s
00:51:41 250K .......... .......... .......... .......... .......... 31% 55.1M 0s
00:51:41 300K .......... .......... .......... .......... .......... 37% 104M 0s
00:51:41 350K .......... .......... .......... .......... .......... 42% 54.4M 0s
00:51:41 400K .......... .......... .......... .......... .......... 47% 4.25M 0s
00:51:41 450K .......... .......... .......... .......... .......... 53% 49.5M 0s
00:51:41 500K .......... .......... .......... .......... .......... 58% 274M 0s
00:51:41 550K .......... .......... .......... .......... .......... 63% 57.2M 0s
00:51:41 600K .......... .......... .......... .......... .......... 69% 119M 0s
00:51:41 650K .......... .......... .......... .......... .......... 74% 4.02M 0s
00:51:41 700K .......... .......... .......... .......... .......... 79% 172M 0s
00:51:41 750K .......... .......... .......... .......... .......... 85% 277M 0s
00:51:41 800K .......... .......... .......... .......... .......... 90% 59.2M 0s
00:51:41 850K .......... .......... .......... .......... .......... 95% 58.5M 0s
00:51:41 900K .......... .......... .......... ......... 100% 3.66M=0.07s
00:51:41
00:51:41 2026-02-18 00:51:41 (13.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:51:41
00:51:41 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:51:41 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:41 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:41 --2026-02-18 00:51:41-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:51:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:51:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:41 HTTP request sent, awaiting response... 200 OK
00:51:41 Length: 30963 (30K) [application/java-archive]
00:51:41 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:51:41
00:51:41 0K .......... .......... .......... 100% 37.5M=0.001s
00:51:41
00:51:41 2026-02-18 00:51:41 (37.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:51:41
00:51:41 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:51:41 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:41 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:41 --2026-02-18 00:51:41-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:51:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:41 HTTP request sent, awaiting response... 200 OK
00:51:41 Length: 241618 (236K) [application/java-archive]
00:51:41 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:51:41
00:51:41 0K .......... .......... .......... .......... .......... 21% 36.7M 0s
00:51:41 50K .......... .......... .......... .......... .......... 42% 3.60M 0s
00:51:41 100K .......... .......... .......... .......... .......... 63% 3.87M 0s
00:51:41 150K .......... .......... .......... .......... .......... 84% 47.7M 0s
00:51:41 200K .......... .......... .......... ..... 100% 311M=0.03s
00:51:41
00:51:41 2026-02-18 00:51:41 (8.04 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:51:41
00:51:41 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:51:41 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:41 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:41 --2026-02-18 00:51:41-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:51:41 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:41 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:42 HTTP request sent, awaiting response... 200 OK
00:51:42 Length: 91685 (90K) [application/java-archive]
00:51:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:51:42
00:51:42 0K .......... .......... .......... .......... .......... 55% 18.1M 0s
00:51:42 50K .......... .......... .......... ......... 100% 3.19M=0.01s
00:51:42
00:51:42 2026-02-18 00:51:42 (5.90 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:51:42
00:51:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:51:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:42 --2026-02-18 00:51:42-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:51:42 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:51:42 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:42 HTTP request sent, awaiting response... 200 OK
00:51:42 Length: 66309 (65K) [application/java-archive]
00:51:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:51:42
00:51:42 0K .......... .......... .......... .......... .......... 77% 31.5M 0s
00:51:42 50K .......... .... 100% 101M=0.002s
00:51:42
00:51:42 2026-02-18 00:51:42 (37.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:51:42
00:51:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:51:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:42 --2026-02-18 00:51:42-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:51:42 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:42 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:42 HTTP request sent, awaiting response... 200 OK
00:51:42 Length: 593063 (579K) [application/java-archive]
00:51:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
00:51:42
00:51:42 0K .......... .......... .......... .......... .......... 8% 30.5M 0s
00:51:42 50K .......... .......... .......... .......... .......... 17% 3.68M 0s
00:51:42 100K .......... .......... .......... .......... .......... 25% 3.95M 0s
00:51:42 150K .......... .......... .......... .......... .......... 34% 37.1M 0s
00:51:42 200K .......... .......... .......... .......... .......... 43% 59.6M 0s
00:51:42 250K .......... .......... .......... .......... .......... 51% 57.0M 0s
00:51:42 300K .......... .......... .......... .......... .......... 60% 161M 0s
00:51:42 350K .......... .......... .......... .......... .......... 69% 4.62M 0s
00:51:42 400K .......... .......... .......... .......... .......... 77% 28.9M 0s
00:51:42 450K .......... .......... .......... .......... .......... 86% 175M 0s
00:51:42 500K .......... .......... .......... .......... .......... 94% 56.8M 0s
00:51:42 550K .......... .......... ......... 100% 252M=0.04s
00:51:42
00:51:42 2026-02-18 00:51:42 (12.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
00:51:42
00:51:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:51:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:42 --2026-02-18 00:51:42-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:51:42 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:51:42 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:42 HTTP request sent, awaiting response... 200 OK
00:51:42 Length: 1688471 (1.6M) [application/java-archive]
00:51:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
00:51:42
00:51:42 0K .......... .......... .......... .......... .......... 3% 3.50M 0s
00:51:42 50K .......... .......... .......... .......... .......... 6% 7.63M 0s
00:51:42 100K .......... .......... .......... .......... .......... 9% 4.99M 0s
00:51:42 150K .......... .......... .......... .......... .......... 12% 10.8M 0s
00:51:42 200K .......... .......... .......... .......... .......... 15% 7.67M 0s
00:51:43 250K .......... .......... .......... .......... .......... 18% 19.2M 0s
00:51:43 300K .......... .......... .......... .......... .......... 21% 21.3M 0s
00:51:43 350K .......... .......... .......... .......... .......... 24% 13.6M 0s
00:51:43 400K .......... .......... .......... .......... .......... 27% 17.8M 0s
00:51:43 450K .......... .......... .......... .......... .......... 30% 19.2M 0s
00:51:43 500K .......... .......... .......... .......... .......... 33% 14.2M 0s
00:51:43 550K .......... .......... .......... .......... .......... 36% 34.1M 0s
00:51:43 600K .......... .......... .......... .......... .......... 39% 14.1M 0s
00:51:43 650K .......... .......... .......... .......... .......... 42% 25.3M 0s
00:51:43 700K .......... .......... .......... .......... .......... 45% 23.9M 0s
00:51:43 750K .......... .......... .......... .......... .......... 48% 10.0M 0s
00:51:43 800K .......... .......... .......... .......... .......... 51% 32.5M 0s
00:51:43 850K .......... .......... .......... .......... .......... 54% 14.0M 0s
00:51:43 900K .......... .......... .......... .......... .......... 57% 13.6M 0s
00:51:43 950K .......... .......... .......... .......... .......... 60% 104M 0s
00:51:43 1000K .......... .......... .......... .......... .......... 63% 10.2M 0s
00:51:43 1050K .......... .......... .......... .......... .......... 66% 34.9M 0s
00:51:43 1100K .......... .......... .......... .......... .......... 69% 13.8M 0s
00:51:43 1150K .......... .......... .......... .......... .......... 72% 12.0M 0s
00:51:43 1200K .......... .......... .......... .......... .......... 75% 89.6M 0s
00:51:43 1250K .......... .......... .......... .......... .......... 78% 11.6M 0s
00:51:43 1300K .......... .......... .......... .......... .......... 81% 35.3M 0s
00:51:43 1350K .......... .......... .......... .......... .......... 84% 15.9M 0s
00:51:43 1400K .......... .......... .......... .......... .......... 87% 10.5M 0s
00:51:43 1450K .......... .......... .......... .......... .......... 90% 42.9M 0s
00:51:43 1500K .......... .......... .......... .......... .......... 94% 14.3M 0s
00:51:43 1550K .......... .......... .......... .......... .......... 97% 21.8M 0s
00:51:43 1600K .......... .......... .......... .......... ........ 100% 23.7M=0.1s
00:51:43
00:51:43 2026-02-18 00:51:43 (13.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
00:51:43
00:51:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:51:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:43 --2026-02-18 00:51:43-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:51:43 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:51:43 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:51:43 HTTP request sent, awaiting response... 200 OK
00:51:43 Length: 36400 (36K) [application/java-archive]
00:51:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:51:43
00:51:43 0K .......... .......... .......... ..... 100% 35.4M=0.001s
00:51:43
00:51:43 2026-02-18 00:51:43 (35.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:51:43
00:51:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:51:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:43 --2026-02-18 00:51:43-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:51:43 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:43 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:43 HTTP request sent, awaiting response... 200 OK
00:51:43 Length: 79195 (77K) [application/java-archive]
00:51:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
00:51:43
00:51:43 0K .......... .......... .......... .......... .......... 64% 31.4M 0s
00:51:43 50K .......... .......... ....... 100% 2.13M=0.01s
00:51:43
00:51:43 2026-02-18 00:51:43 (5.37 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
00:51:43
00:51:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:51:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:43 --2026-02-18 00:51:43-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:51:43 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:43 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:51:43 HTTP request sent, awaiting response... 200 OK
00:51:43 Length: 277829 (271K) [application/java-archive]
00:51:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
00:51:43
00:51:43 0K .......... .......... .......... .......... .......... 18% 35.0M 0s
00:51:43 50K .......... .......... .......... .......... .......... 36% 3.56M 0s
00:51:43 100K .......... .......... .......... .......... .......... 55% 3.99M 0s
00:51:43 150K .......... .......... .......... .......... .......... 73% 35.9M 0s
00:51:43 200K .......... .......... .......... .......... .......... 92% 155M 0s
00:51:43 250K .......... .......... . 100% 272M=0.03s
00:51:43
00:51:43 2026-02-18 00:51:43 (9.11 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
00:51:43
00:51:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:51:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:43 --2026-02-18 00:51:43-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:51:44 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:44 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:51:44 HTTP request sent, awaiting response... 200 OK
00:51:44 Length: 579673 (566K) [application/java-archive]
00:51:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
00:51:44
00:51:44 0K .......... .......... .......... .......... .......... 8% 34.0M 0s
00:51:44 50K .......... .......... .......... .......... .......... 17% 3.56M 0s
00:51:44 100K .......... .......... .......... .......... .......... 26% 3.94M 0s
00:51:44 150K .......... .......... .......... .......... .......... 35% 45.6M 0s
00:51:44 200K .......... .......... .......... .......... .......... 44% 131M 0s
00:51:44 250K .......... .......... .......... .......... .......... 52% 58.7M 0s
00:51:44 300K .......... .......... .......... .......... .......... 61% 88.8M 0s
00:51:44 350K .......... .......... .......... .......... .......... 70% 4.53M 0s
00:51:44 400K .......... .......... .......... .......... .......... 79% 32.2M 0s
00:51:44 450K .......... .......... .......... .......... .......... 88% 179M 0s
00:51:44 500K .......... .......... .......... .......... .......... 97% 78.6M 0s
00:51:44 550K .......... ...... 100% 349M=0.04s
00:51:44
00:51:44 2026-02-18 00:51:44 (12.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
00:51:44
00:51:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:51:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:44 --2026-02-18 00:51:44-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:51:44 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:44 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:51:44 HTTP request sent, awaiting response... 200 OK
00:51:44 Length: 175836 (172K) [application/java-archive]
00:51:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
00:51:44
00:51:44 0K .......... .......... .......... .......... .......... 29% 3.48M 0s
00:51:44 50K .......... .......... .......... .......... .......... 58% 7.68M 0s
00:51:44 100K .......... .......... .......... .......... .......... 87% 4.94M 0s
00:51:44 150K .......... .......... . 100% 11.9M=0.03s
00:51:44
00:51:44 2026-02-18 00:51:44 (5.23 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
00:51:44
00:51:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:51:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:44 --2026-02-18 00:51:44-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:51:44 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:51:44 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:51:44 HTTP request sent, awaiting response... 200 OK
00:51:44 Length: 889211 (868K) [application/java-archive]
00:51:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:51:44
00:51:44 0K .......... .......... .......... .......... .......... 5% 32.4M 0s
00:51:44 50K .......... .......... .......... .......... .......... 11% 3.55M 0s
00:51:44 100K .......... .......... .......... .......... .......... 17% 3.97M 0s
00:51:44 150K .......... .......... .......... .......... .......... 23% 40.8M 0s
00:51:44 200K .......... .......... .......... .......... .......... 28% 156M 0s
00:51:44 250K .......... .......... .......... .......... .......... 34% 57.6M 0s
00:51:44 300K .......... .......... .......... .......... .......... 40% 82.7M 0s
00:51:44 350K .......... .......... .......... .......... .......... 46% 4.58M 0s
00:51:44 400K .......... .......... .......... .......... .......... 51% 39.9M 0s
00:51:44 450K .......... .......... .......... .......... .......... 57% 123M 0s
00:51:44 500K .......... .......... .......... .......... .......... 63% 38.1M 0s
00:51:44 550K .......... .......... .......... .......... .......... 69% 272M 0s
00:51:44 600K .......... .......... .......... .......... .......... 74% 65.6M 0s
00:51:44 650K .......... .......... .......... .......... .......... 80% 4.36M 0s
00:51:44 700K .......... .......... .......... .......... .......... 86% 179M 0s
00:51:44 750K .......... .......... .......... .......... .......... 92% 39.3M 0s
00:51:44 800K .......... .......... .......... .......... .......... 97% 236M 0s
00:51:44 850K .......... ........ 100% 29.3M=0.06s
00:51:44
00:51:44 2026-02-18 00:51:44 (14.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:51:44
00:51:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:51:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:44 --2026-02-18 00:51:44-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:51:45 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:45 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:51:45 HTTP request sent, awaiting response... 200 OK
00:51:45 Length: 736051 (719K) [application/java-archive]
00:51:45 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
00:51:45
00:51:45 0K .......... .......... .......... .......... .......... 6% 3.48M 0s
00:51:45 50K .......... .......... .......... .......... .......... 13% 7.47M 0s
00:51:45 100K .......... .......... .......... .......... .......... 20% 4.97M 0s
00:51:45 150K .......... .......... .......... .......... .......... 27% 9.09M 0s
00:51:45 200K .......... .......... .......... .......... .......... 34% 12.9M 0s
00:51:45 250K .......... .......... .......... .......... .......... 41% 10.7M 0s
00:51:45 300K .......... .......... .......... .......... .......... 48% 18.7M 0s
00:51:45 350K .......... .......... .......... .......... .......... 55% 17.8M 0s
00:51:45 400K .......... .......... .......... .......... .......... 62% 17.2M 0s
00:51:45 450K .......... .......... .......... .......... .......... 69% 25.7M 0s
00:51:45 500K .......... .......... .......... .......... .......... 76% 19.7M 0s
00:51:45 550K .......... .......... .......... .......... .......... 83% 13.1M 0s
00:51:45 600K .......... .......... .......... .......... .......... 90% 13.2M 0s
00:51:45 650K .......... .......... .......... .......... .......... 97% 27.2M 0s
00:51:45 700K .......... ........ 100% 10.4M=0.07s
00:51:45
00:51:45 2026-02-18 00:51:45 (10.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
00:51:45
00:51:45 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:51:45 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:45 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:45 --2026-02-18 00:51:45-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:51:45 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:45 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:45 HTTP request sent, awaiting response... 200 OK
00:51:45 Length: 331034 (323K) [application/java-archive]
00:51:45 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:51:45
00:51:45 0K .......... .......... .......... .......... .......... 15% 31.7M 0s
00:51:45 50K .......... .......... .......... .......... .......... 30% 3.56M 0s
00:51:45 100K .......... .......... .......... .......... .......... 46% 65.5M 0s
00:51:45 150K .......... .......... .......... .......... .......... 61% 3.85M 0s
00:51:45 200K .......... .......... .......... .......... .......... 77% 36.7M 0s
00:51:45 250K .......... .......... .......... .......... .......... 92% 51.2M 0s
00:51:45 300K .......... .......... ... 100% 352M=0.03s
00:51:45
00:51:45 2026-02-18 00:51:45 (10.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:51:45
00:51:45 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:51:45 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:45 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:45 --2026-02-18 00:51:45-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:51:45 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:51:45 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:45 HTTP request sent, awaiting response... 200 OK
00:51:45 Length: 6749842 (6.4M) [application/java-archive]
00:51:45 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
00:51:45
00:51:45 0K .......... .......... .......... .......... .......... 0% 31.9M 0s
00:51:45 50K .......... .......... .......... .......... .......... 1% 3.57M 1s
00:51:45 100K .......... .......... .......... .......... .......... 2% 4.03M 1s
00:51:45 150K .......... .......... .......... .......... .......... 3% 33.6M 1s
00:51:45 200K .......... .......... .......... .......... .......... 3% 76.5M 1s
00:51:45 250K .......... .......... .......... .......... .......... 4% 55.5M 1s
00:51:45 300K .......... .......... .......... .......... .......... 5% 57.3M 1s
00:51:45 350K .......... .......... .......... .......... .......... 6% 4.97M 1s
00:51:45 400K .......... .......... .......... .......... .......... 6% 24.1M 1s
00:51:45 450K .......... .......... .......... .......... .......... 7% 51.6M 1s
00:51:45 500K .......... .......... .......... .......... .......... 8% 225M 0s
00:51:45 550K .......... .......... .......... .......... .......... 9% 53.0M 0s
00:51:45 600K .......... .......... .......... .......... .......... 9% 5.08M 1s
00:51:45 650K .......... .......... .......... .......... .......... 10% 17.5M 0s
00:51:45 700K .......... .......... .......... .......... .......... 11% 131M 0s
00:51:45 750K .......... .......... .......... .......... .......... 12% 202M 0s
00:51:45 800K .......... .......... .......... .......... .......... 12% 59.0M 0s
00:51:45 850K .......... .......... .......... .......... .......... 13% 5.17M 0s
00:51:45 900K .......... .......... .......... .......... .......... 14% 17.3M 0s
00:51:45 950K .......... .......... .......... .......... .......... 15% 109M 0s
00:51:45 1000K .......... .......... .......... .......... .......... 15% 57.7M 0s
00:51:45 1050K .......... .......... .......... .......... .......... 16% 262M 0s
00:51:45 1100K .......... .......... .......... .......... .......... 17% 5.19M 0s
00:51:45 1150K .......... .......... .......... .......... .......... 18% 16.9M 0s
00:51:45 1200K .......... .......... .......... .......... .......... 18% 107M 0s
00:51:45 1250K .......... .......... .......... .......... .......... 19% 56.1M 0s
00:51:45 1300K .......... .......... .......... .......... .......... 20% 53.5M 0s
00:51:45 1350K .......... .......... .......... .......... .......... 21% 123M 0s
00:51:45 1400K .......... .......... .......... .......... .......... 21% 4.20M 0s
00:51:45 1450K .......... .......... .......... .......... .......... 22% 25.6M 0s
00:51:45 1500K .......... .......... .......... .......... .......... 23% 17.1M 0s
00:51:45 1550K .......... .......... .......... .......... .......... 24% 17.6M 0s
00:51:45 1600K .......... .......... .......... .......... .......... 25% 17.3M 0s
00:51:45 1650K .......... .......... .......... .......... .......... 25% 15.2M 0s
00:51:45 1700K .......... .......... .......... .......... .......... 26% 25.5M 0s
00:51:45 1750K .......... .......... .......... .......... .......... 27% 16.9M 0s
00:51:45 1800K .......... .......... .......... .......... .......... 28% 24.2M 0s
00:51:45 1850K .......... .......... .......... .......... .......... 28% 17.1M 0s
00:51:45 1900K .......... .......... .......... .......... .......... 29% 14.1M 0s
00:51:45 1950K .......... .......... .......... .......... .......... 30% 20.7M 0s
00:51:45 2000K .......... .......... .......... .......... .......... 31% 16.5M 0s
00:51:45 2050K .......... .......... .......... .......... .......... 31% 17.6M 0s
00:51:45 2100K .......... .......... .......... .......... .......... 32% 17.1M 0s
00:51:45 2150K .......... .......... .......... .......... .......... 33% 19.4M 0s
00:51:45 2200K .......... .......... .......... .......... .......... 34% 19.0M 0s
00:51:45 2250K .......... .......... .......... .......... .......... 34% 23.9M 0s
00:51:45 2300K .......... .......... .......... .......... .......... 35% 13.4M 0s
00:51:45 2350K .......... .......... .......... .......... .......... 36% 23.1M 0s
00:51:45 2400K .......... .......... .......... .......... .......... 37% 12.2M 0s
00:51:45 2450K .......... .......... .......... .......... .......... 37% 26.6M 0s
00:51:45 2500K .......... .......... .......... .......... .......... 38% 23.6M 0s
00:51:45 2550K .......... .......... .......... .......... .......... 39% 13.7M 0s
00:51:45 2600K .......... .......... .......... .......... .......... 40% 22.3M 0s
00:51:45 2650K .......... .......... .......... .......... .......... 40% 26.3M 0s
00:51:45 2700K .......... .......... .......... .......... .......... 41% 12.1M 0s
00:51:45 2750K .......... .......... .......... .......... .......... 42% 25.5M 0s
00:51:45 2800K .......... .......... .......... .......... .......... 43% 13.3M 0s
00:51:45 2850K .......... .......... .......... .......... .......... 43% 22.8M 0s
00:51:45 2900K .......... .......... .......... .......... .......... 44% 26.0M 0s
00:51:45 2950K .......... .......... .......... .......... .......... 45% 12.2M 0s
00:51:45 3000K .......... .......... .......... .......... .......... 46% 23.0M 0s
00:51:45 3050K .......... .......... .......... .......... .......... 47% 20.1M 0s
00:51:45 3100K .......... .......... .......... .......... .......... 47% 21.1M 0s
00:51:45 3150K .......... .......... .......... .......... .......... 48% 26.5M 0s
00:51:45 3200K .......... .......... .......... .......... .......... 49% 9.62M 0s
00:51:45 3250K .......... .......... .......... .......... .......... 50% 25.4M 0s
00:51:45 3300K .......... .......... .......... .......... .......... 50% 19.2M 0s
00:51:45 3350K .......... .......... .......... .......... .......... 51% 21.5M 0s
00:51:45 3400K .......... .......... .......... .......... .......... 52% 27.5M 0s
00:51:45 3450K .......... .......... .......... .......... .......... 53% 13.0M 0s
00:51:45 3500K .......... .......... .......... .......... .......... 53% 14.6M 0s
00:51:45 3550K .......... .......... .......... .......... .......... 54% 18.7M 0s
00:51:46 3600K .......... .......... .......... .......... .......... 55% 22.9M 0s
00:51:46 3650K .......... .......... .......... .......... .......... 56% 23.8M 0s
00:51:46 3700K .......... .......... .......... .......... .......... 56% 9.57M 0s
00:51:46 3750K .......... .......... .......... .......... .......... 57% 29.1M 0s
00:51:46 3800K .......... .......... .......... .......... .......... 58% 18.6M 0s
00:51:46 3850K .......... .......... .......... .......... .......... 59% 21.4M 0s
00:51:46 3900K .......... .......... .......... .......... .......... 59% 26.0M 0s
00:51:46 3950K .......... .......... .......... .......... .......... 60% 13.0M 0s
00:51:46 4000K .......... .......... .......... .......... .......... 61% 21.4M 0s
00:51:46 4050K .......... .......... .......... .......... .......... 62% 20.4M 0s
00:51:46 4100K .......... .......... .......... .......... .......... 62% 14.8M 0s
00:51:46 4150K .......... .......... .......... .......... .......... 63% 38.4M 0s
00:51:46 4200K .......... .......... .......... .......... .......... 64% 11.8M 0s
00:51:46 4250K .......... .......... .......... .......... .......... 65% 18.4M 0s
00:51:46 4300K .......... .......... .......... .......... .......... 65% 20.1M 0s
00:51:46 4350K .......... .......... .......... .......... .......... 66% 15.7M 0s
00:51:46 4400K .......... .......... .......... .......... .......... 67% 26.5M 0s
00:51:46 4450K .......... .......... .......... .......... .......... 68% 13.4M 0s
00:51:46 4500K .......... .......... .......... .......... .......... 69% 19.4M 0s
00:51:46 4550K .......... .......... .......... .......... .......... 69% 25.3M 0s
00:51:46 4600K .......... .......... .......... .......... .......... 70% 18.9M 0s
00:51:46 4650K .......... .......... .......... .......... .......... 71% 15.8M 0s
00:51:46 4700K .......... .......... .......... .......... .......... 72% 13.6M 0s
00:51:46 4750K .......... .......... .......... .......... .......... 72% 19.6M 0s
00:51:46 4800K .......... .......... .......... .......... .......... 73% 13.3M 0s
00:51:46 4850K .......... .......... .......... .......... .......... 74% 29.2M 0s
00:51:46 4900K .......... .......... .......... .......... .......... 75% 28.2M 0s
00:51:46 4950K .......... .......... .......... .......... .......... 75% 26.7M 0s
00:51:46 5000K .......... .......... .......... .......... .......... 76% 10.5M 0s
00:51:46 5050K .......... .......... .......... .......... .......... 77% 11.8M 0s
00:51:46 5100K .......... .......... .......... .......... .......... 78% 29.0M 0s
00:51:46 5150K .......... .......... .......... .......... .......... 78% 33.8M 0s
00:51:46 5200K .......... .......... .......... .......... .......... 79% 24.4M 0s
00:51:46 5250K .......... .......... .......... .......... .......... 80% 11.3M 0s
00:51:46 5300K .......... .......... .......... .......... .......... 81% 22.8M 0s
00:51:46 5350K .......... .......... .......... .......... .......... 81% 14.6M 0s
00:51:46 5400K .......... .......... .......... .......... .......... 82% 17.7M 0s
00:51:46 5450K .......... .......... .......... .......... .......... 83% 25.3M 0s
00:51:46 5500K .......... .......... .......... .......... .......... 84% 12.8M 0s
00:51:46 5550K .......... .......... .......... .......... .......... 84% 27.1M 0s
00:51:46 5600K .......... .......... .......... .......... .......... 85% 11.7M 0s
00:51:46 5650K .......... .......... .......... .......... .......... 86% 24.1M 0s
00:51:46 5700K .......... .......... .......... .......... .......... 87% 30.1M 0s
00:51:46 5750K .......... .......... .......... .......... .......... 87% 13.5M 0s
00:51:46 5800K .......... .......... .......... .......... .......... 88% 15.9M 0s
00:51:46 5850K .......... .......... .......... .......... .......... 89% 14.4M 0s
00:51:46 5900K .......... .......... .......... .......... .......... 90% 25.6M 0s
00:51:46 5950K .......... .......... .......... .......... .......... 91% 24.4M 0s
00:51:46 6000K .......... .......... .......... .......... .......... 91% 10.5M 0s
00:51:46 6050K .......... .......... .......... .......... .......... 92% 28.1M 0s
00:51:46 6100K .......... .......... .......... .......... .......... 93% 21.7M 0s
00:51:46 6150K .......... .......... .......... .......... .......... 94% 16.4M 0s
00:51:46 6200K .......... .......... .......... .......... .......... 94% 22.8M 0s
00:51:46 6250K .......... .......... .......... .......... .......... 95% 15.2M 0s
00:51:46 6300K .......... .......... .......... .......... .......... 96% 23.7M 0s
00:51:46 6350K .......... .......... .......... .......... .......... 97% 15.4M 0s
00:51:46 6400K .......... .......... .......... .......... .......... 97% 15.8M 0s
00:51:46 6450K .......... .......... .......... .......... .......... 98% 23.6M 0s
00:51:46 6500K .......... .......... .......... .......... .......... 99% 15.1M 0s
00:51:46 6550K .......... .......... .......... .......... . 100% 27.5M=0.4s
00:51:46
00:51:46 2026-02-18 00:51:46 (17.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
00:51:46
00:51:46 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:51:46 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:51:46 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:51:46 --2026-02-18 00:51:46-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:51:46 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:51:46 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:51:46 HTTP request sent, awaiting response... 200 OK
00:51:46 Length: 1732435 (1.7M) [application/java-archive]
00:51:46 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:51:46
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00:51:46
00:51:46 2026-02-18 00:51:46 (13.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:51:46
00:51:46 + for x in *.jar
00:51:46 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:51:46 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:51:46 ++ deactivate nondestructive
00:51:46 ++ '[' -n '' ']'
00:51:46 ++ '[' -n '' ']'
00:51:46 ++ hash -r
00:51:46 ++ '[' -n '' ']'
00:51:46 ++ unset VIRTUAL_ENV
00:51:46 ++ unset VIRTUAL_ENV_PROMPT
00:51:46 ++ '[' '!' nondestructive = nondestructive ']'
00:51:46 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:51:46 ++ export VIRTUAL_ENV
00:51:46 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:51:46 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:51:46 ++ export PATH
00:51:46 ++ '[' -n '' ']'
00:51:46 ++ '[' -z '' ']'
00:51:46 ++ _OLD_VIRTUAL_PS1=
00:51:46 ++ PS1='(.venv3) '
00:51:46 ++ export PS1
00:51:46 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:51:46 ++ export VIRTUAL_ENV_PROMPT
00:51:46 ++ hash -r
00:51:46 + pip install -U pip
00:51:46 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:51:47 Collecting pip
00:51:47 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:51:47 Installing collected packages: pip
00:51:47 Attempting uninstall: pip
00:51:47 Found existing installation: pip 22.3.1
00:51:47 Uninstalling pip-22.3.1:
00:51:47 Successfully uninstalled pip-22.3.1
00:51:48 Successfully installed pip-26.0.1
00:51:48 WARNING: There was an error checking the latest version of pip.
00:51:48 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:51:48 Collecting zeroc-ice==3.6.5
00:51:48 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:51:50 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.3 MB/s 0:00:01
00:51:50 Installing collected packages: zeroc-ice
00:51:51 Successfully installed zeroc-ice-3.6.5
00:51:51 + pip install markdown
00:51:52 Collecting markdown
00:51:52 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
00:51:52 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
00:51:52 Installing collected packages: markdown
00:51:52 Successfully installed markdown-3.10.2
00:51:52 + pip install reportlab
00:51:52 Collecting reportlab
00:51:52 Using cached reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB)
00:51:53 Collecting pillow>=9.0.0 (from reportlab)
00:51:53 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:51:53 Collecting charset-normalizer (from reportlab)
00:51:53 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:51:53 Using cached reportlab-4.4.10-py3-none-any.whl (2.0 MB)
00:51:53 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:51:53 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:51:53 Installing collected packages: pillow, charset-normalizer, reportlab
00:51:54
00:51:54 Successfully installed charset-normalizer-3.4.4 pillow-12.1.1 reportlab-4.4.10
00:51:54 + pip install omego
00:51:55 Collecting omego
00:51:55 Using cached omego-0.7.0-py3-none-any.whl
00:51:55 Collecting future (from omego)
00:51:55 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:51:55 Collecting yaclifw>=0.1.1 (from omego)
00:51:55 Using cached yaclifw-0.2.0-py3-none-any.whl
00:51:55 Collecting six (from yaclifw>=0.1.1->omego)
00:51:55 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:51:55 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:51:55 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:51:55 Installing collected packages: six, future, yaclifw, omego
00:51:55
00:51:55 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:51:55 + pip install tables
00:51:56 Collecting tables
00:51:56 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:51:56 Collecting numpy>=1.20.0 (from tables)
00:51:56 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:51:56 Collecting numexpr>=2.6.2 (from tables)
00:51:56 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:51:56 Collecting packaging (from tables)
00:51:56 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:51:56 Collecting py-cpuinfo (from tables)
00:51:56 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:51:56 Collecting blosc2>=2.3.0 (from tables)
00:51:56 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:51:57 Collecting typing-extensions>=4.4.0 (from tables)
00:51:57 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:51:57 Collecting ndindex (from blosc2>=2.3.0->tables)
00:51:57 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:51:57 Collecting msgpack (from blosc2>=2.3.0->tables)
00:51:57 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:51:57 Collecting requests (from blosc2>=2.3.0->tables)
00:51:57 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:51:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:51:57 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:51:57 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:51:57 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:51:57 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:51:57 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:51:57 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:51:57 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:51:57 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:51:57 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:51:57 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:51:57 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:51:57 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:51:57 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:51:57 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:51:57 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:51:57 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:51:57 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:51:57 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:51:58 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:51:58 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:52:01
00:52:01 Successfully installed blosc2-4.0.0 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
00:52:01 + pip install jinja2
00:52:01 Collecting jinja2
00:52:01 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:52:01 Collecting MarkupSafe>=2.0 (from jinja2)
00:52:01 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:52:01 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:52:01 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:52:02 Installing collected packages: MarkupSafe, jinja2
00:52:02
00:52:02 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:52:02 + pip install omero-py
00:52:02 Collecting omero-py
00:52:02 Using cached omero_py-5.22.0-py3-none-any.whl.metadata (6.5 kB)
00:52:02 Collecting appdirs (from omero-py)
00:52:02 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:52:02 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:52:02 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
00:52:02 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.1)
00:52:02 Collecting PyYAML (from omero-py)
00:52:02 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:52:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:52:02 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:52:02 Collecting portalocker (from omero-py)
00:52:02 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:52:02 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:52:02 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:52:02 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:52:02 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
00:52:02 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB)
00:52:03 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:52:03 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:52:03 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:52:03 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:52:05
00:52:05 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.0 portalocker-3.2.0
00:52:05 + pip install pyarrow
00:52:05 Collecting pyarrow
00:52:05 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.1 kB)
00:52:05 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (47.6 MB)
00:52:06 Installing collected packages: pyarrow
00:52:07 Successfully installed pyarrow-23.0.1
00:52:07 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:52:08 Collecting omero-metadata
00:52:08 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-5d3fj_4l/omero-metadata_89f5a10e0fb6406da87cf3ae81f1f3de
00:52:08 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-5d3fj_4l/omero-metadata_89f5a10e0fb6406da87cf3ae81f1f3de
00:52:09 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 4a51301bc80644f7cd1ea974992a3898b7bfedb5
00:52:09 Installing build dependencies: started
00:52:10 Installing build dependencies: finished with status 'done'
00:52:10 Getting requirements to build wheel: started
00:52:10 Getting requirements to build wheel: finished with status 'done'
00:52:10 Preparing metadata (pyproject.toml): started
00:52:10 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:10 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.0)
00:52:10 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:52:10 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:52:11 Collecting pandas (from omero-metadata)
00:52:11 Downloading pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:52:11 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:52:11 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:52:11 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
00:52:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.1)
00:52:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:52:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:52:11 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:52:11 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:52:11 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:52:11 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:52:11 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:52:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:52:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:52:11 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:52:11 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
00:52:11 Downloading pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
00:52:11 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.3/11.3 MB 20.5 MB/s 0:00:00
00:52:11 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:52:12 Building wheels for collected packages: omero-metadata
00:52:12 Building wheel for omero-metadata (pyproject.toml): started
00:52:12 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:52:12 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39376 sha256=1ab015846a5915b6c84f08023326085f68dddde3c58e698dd0d3aa5930271ac0
00:52:12 Stored in directory: /tmp/pip-ephem-wheel-cache-rtl3lil_/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:52:12 Successfully built omero-metadata
00:52:12 Installing collected packages: python-dateutil, pandas, omero-metadata
00:52:16
00:52:16 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.1 python-dateutil-2.9.0.post0
00:52:16 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:52:16 Collecting omero-cli-render
00:52:16 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-lbelompt/omero-cli-render_2bf607193cda4acbb4b56f5db4dd8a51
00:52:16 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-lbelompt/omero-cli-render_2bf607193cda4acbb4b56f5db4dd8a51
00:52:17 Running command git checkout -b merge_ci --track origin/merge_ci
00:52:18 Switched to a new branch 'merge_ci'
00:52:18 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:52:18 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 1c412f851afd71e1db0b2194198222567a3868e2
00:52:18 Installing build dependencies: started
00:52:18 Installing build dependencies: finished with status 'done'
00:52:18 Getting requirements to build wheel: started
00:52:19 Getting requirements to build wheel: finished with status 'done'
00:52:19 Preparing metadata (pyproject.toml): started
00:52:19 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:52:19 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.0)
00:52:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:52:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:52:19 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
00:52:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.1)
00:52:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:52:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:52:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:52:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:52:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:52:19 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:52:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
00:52:19 Building wheels for collected packages: omero-cli-render
00:52:19 Building wheel for omero-cli-render (pyproject.toml): started
00:52:19 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:52:19 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=020ba27cc8393e040bcbb1e0a090cfe84f40ce7d90ec7e8178991fa914829601
00:52:19 Stored in directory: /tmp/pip-ephem-wheel-cache-_seuif8a/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:52:19 Successfully built omero-cli-render
00:52:19 Installing collected packages: omero-cli-render
00:52:19 Successfully installed omero-cli-render-0.8.2.dev0
00:52:19 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:52:19 Collecting omero-cli-duplicate
00:52:19 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-awgl75rr/omero-cli-duplicate_61baf5ed9c3a4d35bf5daf7914937b02
00:52:19 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-awgl75rr/omero-cli-duplicate_61baf5ed9c3a4d35bf5daf7914937b02
00:52:20 Running command git checkout -b merge_ci --track origin/merge_ci
00:52:21 Switched to a new branch 'merge_ci'
00:52:21 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:52:21 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit e509167da566e89d6d400709e09f734d5d2b210d
00:52:21 Installing build dependencies: started
00:52:21 Installing build dependencies: finished with status 'done'
00:52:21 Getting requirements to build wheel: started
00:52:22 Getting requirements to build wheel: finished with status 'done'
00:52:22 Preparing metadata (pyproject.toml): started
00:52:22 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:22 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.0)
00:52:22 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:52:22 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:52:22 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
00:52:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.1)
00:52:22 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:52:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:52:22 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:52:22 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:52:22 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:52:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:52:22 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:52:22 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
00:52:22 Building wheels for collected packages: omero-cli-duplicate
00:52:22 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:52:22 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:52:22 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=a1cfff55efca54efc87f20243a9aab0a03dd5c009bb9e88d4542b5f68c531484
00:52:22 Stored in directory: /tmp/pip-ephem-wheel-cache-jv_ka7p8/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:52:22 Successfully built omero-cli-duplicate
00:52:22 Installing collected packages: omero-cli-duplicate
00:52:22 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:52:22 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:52:23 Collecting omero-cli-zarr
00:52:23 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-_udl2iow/omero-cli-zarr_e58e81fbdb014b039221e0c762b7d292
00:52:23 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-_udl2iow/omero-cli-zarr_e58e81fbdb014b039221e0c762b7d292
00:52:23 Running command git checkout -b merge_ci --track origin/merge_ci
00:52:24 Switched to a new branch 'merge_ci'
00:52:24 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:52:24 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 10cd3a8cab9aca41de397964607650ff6cd76099
00:52:24 Installing build dependencies: started
00:52:24 Installing build dependencies: finished with status 'done'
00:52:24 Getting requirements to build wheel: started
00:52:24 Getting requirements to build wheel: finished with status 'done'
00:52:24 Installing backend dependencies: started
00:52:25 Installing backend dependencies: finished with status 'done'
00:52:25 Preparing metadata (pyproject.toml): started
00:52:26 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:26 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.0)
00:52:26 Collecting ome-zarr>=0.12.0 (from omero-cli-zarr)
00:52:26 Using cached ome_zarr-0.13.0-py3-none-any.whl.metadata (2.9 kB)
00:52:26 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.4.2)
00:52:26 Collecting dask<=2026.1.1,>=2025.12.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:52:26 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:52:26 Collecting zarr>=3.0.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:52:26 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:52:26 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:26 Using cached fsspec-2026.2.0-py3-none-any.whl.metadata (10 kB)
00:52:27 Collecting aiohttp (from ome-zarr>=0.12.0->omero-cli-zarr)
00:52:27 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:52:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.32.5)
00:52:27 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:52:27 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:52:27 Collecting toolz (from ome-zarr>=0.12.0->omero-cli-zarr)
00:52:27 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:52:28 Collecting rangehttpserver (from ome-zarr>=0.12.0->omero-cli-zarr)
00:52:28 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:52:28 Collecting click>=8.1 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:28 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:52:28 Collecting cloudpickle>=3.0.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:28 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:52:28 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr) (26.0)
00:52:28 Collecting partd>=1.4.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:28 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:52:28 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr) (6.0.3)
00:52:28 Collecting importlib_metadata>=4.13.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:28 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:52:28 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:28 Using cached s3fs-2026.2.0-py3-none-any.whl.metadata (1.2 kB)
00:52:28 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:28 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:52:28 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:52:28 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:52:28 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.1)
00:52:28 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:52:28 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:52:28 Collecting locket (from partd>=1.4.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:28 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:52:28 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:28 Using cached aiobotocore-3.1.3-py3-none-any.whl.metadata (26 kB)
00:52:29 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:29 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:52:29 Collecting botocore<1.42.50,>=1.41.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:29 Using cached botocore-1.42.49-py3-none-any.whl.metadata (5.9 kB)
00:52:29 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.9.0.post0)
00:52:29 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:29 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:52:30 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:30 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:52:30 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:30 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:52:30 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:30 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:52:30 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:30 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:52:30 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:30 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:52:31 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:31 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:52:31 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:31 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:52:31 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:31 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:52:31 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.50,>=1.41.0->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.6.3)
00:52:31 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (1.17.0)
00:52:31 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (3.11)
00:52:31 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (4.15.0)
00:52:31 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:31 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:52:31 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:31 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:52:31 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:31 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
00:52:31 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:31 Downloading tifffile-2026.2.16-py3-none-any.whl.metadata (30 kB)
00:52:32 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:32 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:52:32 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:32 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:52:32 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:32 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:52:32 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:52:32 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:52:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (3.4.4)
00:52:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (2026.1.4)
00:52:32 Using cached ome_zarr-0.13.0-py3-none-any.whl (42 kB)
00:52:32 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:52:32 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:52:32 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:52:32 Using cached fsspec-2026.2.0-py3-none-any.whl (202 kB)
00:52:32 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:52:32 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:52:33 Using cached s3fs-2026.2.0-py3-none-any.whl (31 kB)
00:52:33 Using cached aiobotocore-3.1.3-py3-none-any.whl (87 kB)
00:52:33 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:52:33 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:52:33 Using cached botocore-1.42.49-py3-none-any.whl (14.6 MB)
00:52:33 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:52:33 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:52:33 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
00:52:33 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:52:33 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:52:33 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:52:33 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:52:33 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:52:33 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:52:34 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:52:34 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:52:34 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:52:34 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:52:34 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB)
00:52:34 Downloading tifffile-2026.2.16-py3-none-any.whl (233 kB)
00:52:34 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:52:34 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:52:34 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:52:34 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:52:34 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:52:34 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:52:34 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:52:34 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:52:35 Building wheels for collected packages: omero-cli-zarr
00:52:35 Building wheel for omero-cli-zarr (pyproject.toml): started
00:52:35 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:52:35 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev152+g10cd3a8-py3-none-any.whl size=38159 sha256=b40e02b1991faa18ba43e8c699083f354237e401c6be746536fb1f76424e6dfe
00:52:35 Stored in directory: /tmp/pip-ephem-wheel-cache-apks0y6k/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:52:35 Successfully built omero-cli-zarr
00:52:35 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, partd, importlib_metadata, botocore, aiosignal, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:52:44
00:52:44 Successfully installed aiobotocore-3.1.3 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.49 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.2.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.13.0 omero-cli-zarr-0.5.5.dev152+g10cd3a8 partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.2.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.2.16 toolz-1.1.0 wrapt-2.1.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0
00:52:45 + pip install omero-certificates
00:52:45 Collecting omero-certificates
00:52:45 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:52:45 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.0)
00:52:45 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:52:45 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:52:45 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
00:52:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.1)
00:52:45 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:52:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:52:45 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:52:45 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:52:45 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:52:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:52:45 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:52:45 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
00:52:45 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:52:45 Installing collected packages: omero-certificates
00:52:45 Successfully installed omero-certificates-0.4.0
00:52:45 + for x in *.tar.gz
00:52:45 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:52:46 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:52:46 Installing build dependencies: started
00:52:47 Installing build dependencies: finished with status 'done'
00:52:47 Getting requirements to build wheel: started
00:52:47 Getting requirements to build wheel: finished with status 'done'
00:52:47 Preparing metadata (pyproject.toml): started
00:52:47 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:47 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.0)
00:52:47 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:52:47 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:52:47 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
00:52:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.1)
00:52:47 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:52:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:52:47 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:52:47 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:52:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:52:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:52:47 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:52:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:52:47 Building wheels for collected packages: omero-dropbox
00:52:47 Building wheel for omero-dropbox (pyproject.toml): started
00:52:47 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:52:47 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=6b107b514ed930c5c74624596f8dda13140e668e05f49cc680c40277a8312796
00:52:47 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:52:47 Successfully built omero-dropbox
00:52:48 Installing collected packages: omero-dropbox
00:52:48 Successfully installed omero-dropbox-5.7.1.dev0
00:52:48 + for x in *.tar.gz
00:52:48 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:52:48 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:52:48 Installing build dependencies: started
00:52:49 Installing build dependencies: finished with status 'done'
00:52:49 Getting requirements to build wheel: started
00:52:49 Getting requirements to build wheel: finished with status 'done'
00:52:49 Preparing metadata (pyproject.toml): started
00:52:49 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:49 Building wheels for collected packages: omero_marshal
00:52:49 Building wheel for omero_marshal (pyproject.toml): started
00:52:50 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:52:50 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=6fc73c31ca5d6f6af7dc93239ee97caba9c927eeb34c305faa6f4f9416a0d120
00:52:50 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:52:50 Successfully built omero_marshal
00:52:50 Installing collected packages: omero_marshal
00:52:50 Successfully installed omero_marshal-0.9.2.dev0
00:52:50 + for x in *.tar.gz
00:52:50 + pip install -U omero_py-5.22.1.dev0.tar.gz
00:52:50 Processing ./omero_py-5.22.1.dev0.tar.gz
00:52:50 Installing build dependencies: started
00:52:51 Installing build dependencies: finished with status 'done'
00:52:51 Getting requirements to build wheel: started
00:52:52 Getting requirements to build wheel: finished with status 'done'
00:52:52 Preparing metadata (pyproject.toml): started
00:52:52 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:52 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.4.4)
00:52:52 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.0.0)
00:52:52 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.4.2)
00:52:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (12.1.1)
00:52:52 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (6.0.3)
00:52:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.6.5)
00:52:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.32.5)
00:52:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.2.0)
00:52:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.4.4)
00:52:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.11)
00:52:52 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2.6.3)
00:52:52 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2026.1.4)
00:52:52 Building wheels for collected packages: omero-py
00:52:52 Building wheel for omero-py (pyproject.toml): started
00:52:53 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:52:53 Created wheel for omero-py: filename=omero_py-5.22.1.dev0-py3-none-any.whl size=2786653 sha256=c40f4aaa070d15a07dc47555bc99062c77857ff182ff4f9ab5162c2da25e429a
00:52:53 Stored in directory: /home/omero/.cache/pip/wheels/e5/0d/4a/1d505358a194b66ce24f7dc55acc515e437e72953730429407
00:52:53 Successfully built omero-py
00:52:53 Installing collected packages: omero-py
00:52:53 Attempting uninstall: omero-py
00:52:53 Found existing installation: omero-py 5.22.0
00:52:53 Uninstalling omero-py-5.22.0:
00:52:53 Successfully uninstalled omero-py-5.22.0
00:52:55 Successfully installed omero-py-5.22.1.dev0
00:52:55 + for x in *.tar.gz
00:52:55 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:52:56 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:52:56 Installing build dependencies: started
00:52:56 Installing build dependencies: finished with status 'done'
00:52:56 Getting requirements to build wheel: started
00:52:57 Getting requirements to build wheel: finished with status 'done'
00:52:57 Preparing metadata (pyproject.toml): started
00:52:57 Preparing metadata (pyproject.toml): finished with status 'done'
00:52:57 Building wheels for collected packages: omero-scripts
00:52:57 Building wheel for omero-scripts (pyproject.toml): started
00:52:57 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:52:57 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137002 sha256=fbadfbd57fc736d7c6beffdcab14e5a091377bc23123b719e447e287a378ff3a
00:52:57 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:52:57 Successfully built omero-scripts
00:52:57 Installing collected packages: omero-scripts
00:52:59 Successfully installed omero-scripts-5.10.1.dev0
00:52:59 + for x in *.tar.gz
00:52:59 + pip install -U omero_web-5.31.1.dev0.tar.gz
00:52:59 Processing ./omero_web-5.31.1.dev0.tar.gz
00:52:59 Installing build dependencies: started
00:53:00 Installing build dependencies: finished with status 'done'
00:53:00 Getting requirements to build wheel: started
00:53:00 Getting requirements to build wheel: finished with status 'done'
00:53:00 Preparing metadata (pyproject.toml): started
00:53:01 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:01 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.1.dev0)
00:53:01 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0)
00:53:01 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:53:01 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0)
00:53:01 Using cached django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
00:53:02 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0)
00:53:02 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:53:02 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0)
00:53:02 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:53:02 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0)
00:53:02 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:53:02 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0)
00:53:02 Using cached gunicorn-25.1.0-py3-none-any.whl.metadata (5.5 kB)
00:53:02 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0)
00:53:02 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.1.1)
00:53:02 Collecting pytz (from omero-web==5.31.1.dev0)
00:53:02 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:53:02 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0)
00:53:02 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.0)
00:53:02 Collecting importlib-resources (from omero-web==5.31.1.dev0)
00:53:02 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:53:02 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:53:02 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:53:02 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:53:02 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:53:02 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1)
00:53:02 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0)
00:53:02 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:53:02 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4)
00:53:02 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0)
00:53:02 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.2)
00:53:02 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3)
00:53:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5)
00:53:02 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.32.5)
00:53:02 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.4)
00:53:02 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.11)
00:53:02 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3)
00:53:02 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.1.4)
00:53:03 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:53:03 Using cached django-5.2.11-py3-none-any.whl (8.3 MB)
00:53:03 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:53:03 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:53:03 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:53:03 Using cached gunicorn-25.1.0-py3-none-any.whl (197 kB)
00:53:03 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:53:03 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:53:03 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:53:03 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:53:03 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:53:03 Building wheels for collected packages: omero-web
00:53:03 Building wheel for omero-web (pyproject.toml): started
00:53:04 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:53:04 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819289 sha256=6630eaa8b6aff76066bcf6e6c5784c0f23d124bd79fc84b685aa4e3ae78d1e29
00:53:04 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3
00:53:04 Successfully built omero-web
00:53:04 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:53:11
00:53:11 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.1.0 importlib-resources-6.5.2 omero-web-5.31.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
00:53:11 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:53:11 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:53:11 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:53:11 --2026-02-18 00:53:11-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:53:11 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.109.133, 185.199.110.133, ...
00:53:11 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
00:53:11 HTTP request sent, awaiting response... 200 OK
00:53:11 Length: 137709 (134K) [text/plain]
00:53:11 Saving to: ‘Figure_To_Pdf.py’
00:53:11
00:53:11 0K .......... .......... .......... .......... .......... 37% 3.68M 0s
00:53:11 50K .......... .......... .......... .......... .......... 74% 14.7M 0s
00:53:11 100K .......... .......... .......... .... 100% 7.43M=0.02s
00:53:11
00:53:11 2026-02-18 00:53:11 (6.22 MB/s) - ‘Figure_To_Pdf.py’ saved [137709/137709]
00:53:11
00:53:11 + chmod 755 Figure_To_Pdf.py
00:53:11 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:53:11 + omero config set omero.db.name OMERO-server
00:53:13 + omero config set omero.db.host pg
00:53:15 + omero config set omero.db.user postgres
00:53:17 + omero config set omero.data.dir /home/omero/omero-server-data
00:53:19 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:53:21 + omero config set omero.db.poolsize 25
00:53:23 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:53:25 + omero config set omero.security.trustStorePassword changeit
00:53:27 + omero config set omero.mail.config true
00:53:29 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:53:31 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:53:33 + omero certificates
00:53:35 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:53:35 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:53:35 + '[' false = true ']'
00:53:35 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:53:35 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:53:35 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:53:35 2026-02-18 00:53:35,786 [ omego.db] DEBUG dbcommand => upgrade
00:53:35 2026-02-18 00:53:35,786 [ omego.db] DEBUG dbhost => localhost
00:53:35 2026-02-18 00:53:35,786 [ omego.db] DEBUG dbname => OMERO-server
00:53:35 2026-02-18 00:53:35,786 [ omego.db] DEBUG dbpass => omero
00:53:35 2026-02-18 00:53:35,786 [ omego.db] DEBUG dbuser => omero
00:53:35 2026-02-18 00:53:35,786 [ omego.db] DEBUG rootpass => omero
00:53:35 2026-02-18 00:53:35,786 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:53:35 2026-02-18 00:53:35,786 [omego.extern] INFO Executing : omero version
00:53:37 OMERO.py version:
00:53:37 OMERO.server version:
00:53:37 5.6.3-594-5c840ba44e-ice36-b57
00:53:37 5.22.1.dev0
00:53:37 2026-02-18 00:53:37,891 [omego.extern] INFO Completed [2.104 s]
00:53:37 2026-02-18 00:53:37,891 [omego.extern] DEBUG Using omero CLI from omero
00:53:37 2026-02-18 00:53:37,891 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:53:37 2026-02-18 00:53:37,891 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:53:37 2026-02-18 00:53:37,891 [omego.extern] INFO Executing : omero config get --show-password
00:53:39 2026-02-18 00:53:39,829 [omego.extern] INFO Completed [1.938 s]
00:53:39 2026-02-18 00:53:39,829 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:53:39 2026-02-18 00:53:39,829 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:53:40 2026-02-18 00:53:40,100 [omego.extern] INFO Completed [0.271 s]
00:53:40 2026-02-18 00:53:40,100 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:53:40 2026-02-18 00:53:40,100 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:53:40
00:53:40 2026-02-18 00:53:40,101 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:53:40 2026-02-18 00:53:40,101 [omego.extern] INFO Executing : omero config get --show-password
00:53:42 2026-02-18 00:53:42,039 [omego.extern] INFO Completed [1.939 s]
00:53:42 2026-02-18 00:53:42,040 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:53:42 2026-02-18 00:53:42,040 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:53:42 2026-02-18 00:53:42,241 [omego.extern] INFO Completed [0.201 s]
00:53:42 2026-02-18 00:53:42,241 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.6") at port "5432".\n'
00:53:42 2026-02-18 00:53:42,241 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:53:42 2026-02-18 00:53:42,241 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:53:42 2026-02-18 00:53:42,241 [omego.extern] INFO Executing : omero config get --show-password
00:53:44 2026-02-18 00:53:44,172 [omego.extern] INFO Completed [1.931 s]
00:53:44 2026-02-18 00:53:44,172 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:53:44 2026-02-18 00:53:44,173 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:53:44 2026-02-18 00:53:44,407 [omego.extern] INFO Completed [0.235 s]
00:53:44 2026-02-18 00:53:44,407 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:53:44 2026-02-18 00:53:44,408 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:53:44 2026-02-18 00:53:44,409 [ omego.db] INFO Database is already at OMERO5.4__0
00:53:44 + export LANG=en_US.UTF-8
00:53:44 + LANG=en_US.UTF-8
00:53:44 + export LANGUAGE=en_US:en
00:53:44 + LANGUAGE=en_US:en
00:53:44 + export LC_ALL=en_US.UTF-8
00:53:44 + LC_ALL=en_US.UTF-8
00:53:44 + BUILD_ID=DONT_KILL_ME
00:53:44 + omero admin start
00:53:50 No descriptor given. Using etc/grid/default.xml
00:54:00 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:54:00 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:54:00 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:54:00 Waiting on startup. Use CTRL-C to exit
00:54:00 + omero admin waitup
00:54:02 Waiting on startup. Use CTRL-C to exit
00:54:02 + omero admin diagnostics
00:54:04
00:54:04 ================================================================================
00:54:04 OMERO Diagnostics (admin)
00:54:04 ================================================================================
00:54:04
00:54:04 Commands: java -version 17.0.17 (/usr/bin/java)
00:54:04 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:54:04 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:54:04 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:54:04 Commands: psql --version 16.11 (/usr/bin/psql)
00:54:04 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:54:05
00:54:05 Component: OMERO.py 5.22.1.dev0
00:54:05 Component: OMERO.server 5.6.3-594-5c840ba44e-ice36-b57
00:54:05
00:54:05 Server: icegridnode running
00:54:05 Server: Blitz-0 active (pid = 3344, enabled)
00:54:05 Server: Indexer-0 activating (enabled)
00:54:05 Server: OMERO.Glacier2 active (pid = 3379, enabled)
00:54:05 Server: OMERO.IceStorm active (pid = 3406, enabled)
00:54:05 Server: Processor-0 active (pid = 3399, enabled)
00:54:05 Server: Tables-0 active (pid = 3413, enabled)
00:54:05
00:54:05 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:54:05 Log files: Blitz-0.log 30.5 KB errors=0 warnings=1
00:54:05 Log files: DropBox.log n/a
00:54:05 Log files: FileServer.log n/a
00:54:05 Log files: Indexer-0.log 598 B
00:54:05 Log files: MonitorServer.log n/a
00:54:05 Log files: Processor-0.log 735 B
00:54:05 Log files: Tables-0.log 961 B
00:54:05 Log files: TestDropBox.log n/a
00:54:05 Log files: master.err empty
00:54:05 Log files: master.out 30.1 KB
00:54:05 Log files: Total size 0.06 MB
00:54:05
00:54:05
00:54:05 Environment:OMERO_HOME=(unset)
00:54:05 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:54:05 Environment:OMERO_NODE=(unset)
00:54:05 Environment:OMERO_MASTER=(unset)
00:54:05 Environment:OMERO_USERDIR=(unset)
00:54:05 Environment:OMERO_TMPDIR=(unset)
00:54:05 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:54:05 Environment:PYTHONPATH=(unset)
00:54:05 Environment:ICE_HOME=/opt/ice-3.6.5
00:54:05 Environment:LD_LIBRARY_PATH=(unset)
00:54:05 Environment:DYLD_LIBRARY_PATH=(unset)
00:54:05
00:54:05 OMERO SSL port:4064
00:54:05 OMERO TCP port:4063
00:54:05 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:54:05 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:54:05
00:54:05 JVM settings: Blitz-${index} -Xmx7200m
00:54:05 JVM settings: Indexer-${index} -Xmx4800m
00:54:05 JVM settings: PixelData-${index} -Xmx7200m
00:54:05 JVM settings: Repository-${index} -Xmx4800m
00:54:05
00:54:05 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 18 February 2026 57272873f057613849438a411ca57c3a2d3263df
00:54:05 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 18 February 2026 57272873f057613849438a411ca57c3a2d3263df
00:54:05 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 18 February 2026 57272873f057613849438a411ca57c3a2d3263df
00:54:05 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 18 February 2026 0920e64cec3cdb824b97ca160f9ff18327eea70b
00:54:05 Jar: lib/server/ome-common.jar OME Common Java 6.2.1-SNAPSHOT 18 February 2026 0920e64cec3cdb824b97ca160f9ff18327eea70b
00:54:05 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 18 February 2026 0920e64cec3cdb824b97ca160f9ff18327eea70b
00:54:05 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 18 February 2026 0920e64cec3cdb824b97ca160f9ff18327eea70b
00:54:05 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 18 February 2026 0920e64cec3cdb824b97ca160f9ff18327eea70b
00:54:05 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 18 February 2026 0920e64cec3cdb824b97ca160f9ff18327eea70b
00:54:05 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:54:05 Jar: lib/server/omero-common.jar jar 5.7.5-SNAPSHOT
00:54:05 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:54:05 Jar: lib/server/omero-model.jar jar 5.7.5-SNAPSHOT
00:54:05 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:54:05 Jar: lib/server/omero-romio.jar jar 5.8.5-SNAPSHOT
00:54:05 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:54:05 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 8f55d4779c20333a7abc5a472c642dc89f647eef
00:54:05 + deactivate
00:54:05 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:54:05 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:54:05 + export PATH
00:54:05 + unset _OLD_VIRTUAL_PATH
00:54:05 + '[' -n '' ']'
00:54:05 + hash -r
00:54:05 + '[' -n '' ']'
00:54:05 + unset VIRTUAL_ENV
00:54:05 + unset VIRTUAL_ENV_PROMPT
00:54:05 + '[' '!' '' = nondestructive ']'
00:54:05 + unset -f deactivate
00:54:05 Finished: SUCCESS
