08:51:51 Started by user devspace
08:51:51 Running as SYSTEM
08:51:51 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-test-integration
08:51:51 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins12741402459895066341.sh
08:51:52 + rm -rf /home/omero/workspace/OMERO-test-integration/.venv3
08:51:52 + python3 -m venv /home/omero/workspace/OMERO-test-integration/.venv3
08:51:58 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
08:51:58 ++ deactivate nondestructive
08:51:58 ++ '[' -n '' ']'
08:51:58 ++ '[' -n '' ']'
08:51:58 ++ '[' -n /bin/bash -o -n '' ']'
08:51:58 ++ hash -r
08:51:58 ++ '[' -n '' ']'
08:51:58 ++ unset VIRTUAL_ENV
08:51:58 ++ '[' '!' nondestructive = nondestructive ']'
08:51:58 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
08:51:58 ++ export VIRTUAL_ENV
08:51:58 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:51:58 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:51:58 ++ export PATH
08:51:58 ++ '[' -n '' ']'
08:51:58 ++ '[' -z '' ']'
08:51:58 ++ _OLD_VIRTUAL_PS1=
08:51:58 ++ PS1='(.venv3) '
08:51:58 ++ export PS1
08:51:58 ++ '[' -n /bin/bash -o -n '' ']'
08:51:58 ++ hash -r
08:51:58 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
08:51:58 Collecting zeroc-ice==3.6.5
08:51:59 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
08:52:01 Installing collected packages: zeroc-ice
08:52:02 Successfully installed zeroc-ice-3.6.5
08:52:02 + pip install -U pip future setuptools
08:52:02 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
08:52:03 Collecting pip
08:52:03 Using cached pip-24.2-py3-none-any.whl (1.8 MB)
08:52:03 Collecting future
08:52:03 Using cached future-1.0.0-py3-none-any.whl (491 kB)
08:52:03 Requirement already satisfied: setuptools in ./.venv3/lib/python3.9/site-packages (53.0.0)
08:52:04 Collecting setuptools
08:52:04 Using cached setuptools-75.1.0-py3-none-any.whl (1.2 MB)
08:52:04 Installing collected packages: setuptools, pip, future
08:52:04 Attempting uninstall: setuptools
08:52:04 Found existing installation: setuptools 53.0.0
08:52:04 Uninstalling setuptools-53.0.0:
08:52:04 Successfully uninstalled setuptools-53.0.0
08:52:05 Attempting uninstall: pip
08:52:05 Found existing installation: pip 21.2.3
08:52:05 Uninstalling pip-21.2.3:
08:52:05 Successfully uninstalled pip-21.2.3
08:52:07 Successfully installed future-1.0.0 pip-24.2 setuptools-75.1.0
08:52:07 + pip install markdown
08:52:07 Collecting markdown
08:52:07 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
08:52:07 Collecting importlib-metadata>=4.4 (from markdown)
08:52:07 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
08:52:08 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
08:52:08 Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)
08:52:08 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
08:52:08 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
08:52:08 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB)
08:52:08 Installing collected packages: zipp, importlib-metadata, markdown
08:52:08 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2
08:52:08 + pip install mox3 pytest pytest-django pytest-xdist pytest-mock
08:52:09 Collecting mox3
08:52:09 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
08:52:09 Collecting pytest
08:52:09 Using cached pytest-8.3.3-py3-none-any.whl.metadata (7.5 kB)
08:52:09 Collecting pytest-django
08:52:09 Using cached pytest_django-4.9.0-py3-none-any.whl.metadata (8.2 kB)
08:52:09 Collecting pytest-xdist
08:52:09 Using cached pytest_xdist-3.6.1-py3-none-any.whl.metadata (4.3 kB)
08:52:09 Collecting pytest-mock
08:52:09 Using cached pytest_mock-3.14.0-py3-none-any.whl.metadata (3.8 kB)
08:52:10 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
08:52:10 Using cached pbr-6.1.0-py2.py3-none-any.whl.metadata (3.4 kB)
08:52:10 Collecting fixtures>=3.0.0 (from mox3)
08:52:10 Using cached fixtures-4.1.0-py3-none-any.whl.metadata (21 kB)
08:52:10 Collecting iniconfig (from pytest)
08:52:10 Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
08:52:10 Collecting packaging (from pytest)
08:52:10 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
08:52:10 Collecting pluggy<2,>=1.5 (from pytest)
08:52:10 Using cached pluggy-1.5.0-py3-none-any.whl.metadata (4.8 kB)
08:52:10 Collecting exceptiongroup>=1.0.0rc8 (from pytest)
08:52:10 Using cached exceptiongroup-1.2.2-py3-none-any.whl.metadata (6.6 kB)
08:52:10 Collecting tomli>=1 (from pytest)
08:52:10 Using cached tomli-2.0.2-py3-none-any.whl.metadata (10.0 kB)
08:52:11 Collecting execnet>=2.1 (from pytest-xdist)
08:52:11 Using cached execnet-2.1.1-py3-none-any.whl.metadata (2.9 kB)
08:52:11 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
08:52:11 Using cached pytest-8.3.3-py3-none-any.whl (342 kB)
08:52:11 Using cached pytest_django-4.9.0-py3-none-any.whl (23 kB)
08:52:11 Using cached pytest_xdist-3.6.1-py3-none-any.whl (46 kB)
08:52:11 Using cached pytest_mock-3.14.0-py3-none-any.whl (9.9 kB)
08:52:11 Using cached exceptiongroup-1.2.2-py3-none-any.whl (16 kB)
08:52:11 Using cached execnet-2.1.1-py3-none-any.whl (40 kB)
08:52:11 Using cached fixtures-4.1.0-py3-none-any.whl (64 kB)
08:52:11 Using cached pbr-6.1.0-py2.py3-none-any.whl (108 kB)
08:52:11 Using cached pluggy-1.5.0-py3-none-any.whl (20 kB)
08:52:11 Using cached tomli-2.0.2-py3-none-any.whl (13 kB)
08:52:11 Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
08:52:11 Using cached packaging-24.1-py3-none-any.whl (53 kB)
08:52:11 Installing collected packages: tomli, pluggy, pbr, packaging, iniconfig, execnet, exceptiongroup, pytest, fixtures, pytest-xdist, pytest-mock, pytest-django, mox3
08:52:12 Successfully installed exceptiongroup-1.2.2 execnet-2.1.1 fixtures-4.1.0 iniconfig-2.0.0 mox3-1.1.0 packaging-24.1 pbr-6.1.0 pluggy-1.5.0 pytest-8.3.3 pytest-django-4.9.0 pytest-mock-3.14.0 pytest-xdist-3.6.1 tomli-2.0.2
08:52:12 + pip install tables
08:52:13 Collecting tables
08:52:13 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
08:52:13 Collecting numpy>=1.19.0 (from tables)
08:52:13 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
08:52:13 Collecting numexpr>=2.6.2 (from tables)
08:52:13 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
08:52:13 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from tables) (24.1)
08:52:13 Collecting py-cpuinfo (from tables)
08:52:13 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
08:52:14 Collecting blosc2>=2.3.0 (from tables)
08:52:14 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
08:52:14 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
08:52:14 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB)
08:52:14 Collecting msgpack (from blosc2>=2.3.0->tables)
08:52:14 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
08:52:14 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
08:52:14 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
08:52:14 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
08:52:15 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
08:52:15 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
08:52:15 Using cached ndindex-1.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (478 kB)
08:52:15 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
08:52:16 Installing collected packages: py-cpuinfo, numpy, ndindex, msgpack, numexpr, blosc2, tables
08:52:18 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.2 numexpr-2.10.1 numpy-2.0.2 py-cpuinfo-9.0.0 tables-3.9.2
08:52:19 + pip install jinja2
08:52:19 Collecting jinja2
08:52:19 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
08:52:19 Collecting MarkupSafe>=2.0 (from jinja2)
08:52:19 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
08:52:19 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
08:52:20 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
08:52:20 Installing collected packages: MarkupSafe, jinja2
08:52:21 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
08:52:21 + pip install PyYAML
08:52:21 Collecting PyYAML
08:52:21 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
08:52:21 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
08:52:22 Installing collected packages: PyYAML
08:52:22 Successfully installed PyYAML-6.0.2
08:52:22 + pip install omero-py omero-web
08:52:23 Collecting omero-py
08:52:23 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB)
08:52:23 Collecting omero-web
08:52:23 Using cached omero_web-5.27.2-py3-none-any.whl.metadata (6.4 kB)
08:52:23 Collecting urllib3<2 (from omero-py)
08:52:23 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
08:52:23 Collecting appdirs (from omero-py)
08:52:23 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
08:52:23 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
08:52:23 Collecting numpy<2 (from omero-py)
08:52:23 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
08:52:24 Collecting Pillow>=10.0.0 (from omero-py)
08:52:24 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
08:52:24 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py) (6.0.2)
08:52:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
08:52:24 Collecting requests (from omero-py)
08:52:24 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
08:52:24 Collecting portalocker (from omero-py)
08:52:24 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
08:52:24 Collecting concurrent-log-handler>=0.9.20 (from omero-web)
08:52:24 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
08:52:25 Collecting Django<4.3,>=4.2.3 (from omero-web)
08:52:25 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB)
08:52:26 Collecting django-pipeline==2.1.0 (from omero-web)
08:52:26 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
08:52:26 Collecting django-cors-headers==3.7.0 (from omero-web)
08:52:26 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
08:52:27 Collecting whitenoise>=5.3.0 (from omero-web)
08:52:27 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
08:52:27 Collecting gunicorn>=19.3 (from omero-web)
08:52:27 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
08:52:28 Collecting omero-marshal>=0.7.0 (from omero-web)
08:52:28 Using cached omero_marshal-0.9.0-py3-none-any.whl.metadata (2.2 kB)
08:52:29 Collecting pytz (from omero-web)
08:52:29 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
08:52:29 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web) (24.1)
08:52:29 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web)
08:52:29 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
08:52:29 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web)
08:52:29 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
08:52:29 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
08:52:29 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
08:52:29 Collecting idna<4,>=2.5 (from requests->omero-py)
08:52:29 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
08:52:29 Collecting certifi>=2017.4.17 (from requests->omero-py)
08:52:29 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
08:52:29 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web)
08:52:29 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
08:52:29 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB)
08:52:29 Using cached omero_web-5.27.2-py3-none-any.whl (2.8 MB)
08:52:30 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
08:52:30 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
08:52:30 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
08:52:30 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB)
08:52:30 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
08:52:30 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
08:52:30 Using cached omero_marshal-0.9.0-py3-none-any.whl (88 kB)
08:52:30 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
08:52:31 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
08:52:31 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
08:52:31 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
08:52:31 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
08:52:31 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
08:52:32 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
08:52:32 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
08:52:32 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
08:52:32 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
08:52:32 Using cached idna-3.10-py3-none-any.whl (70 kB)
08:52:32 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
08:52:32 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
08:52:32 Installing collected packages: pytz, django-pipeline, appdirs, whitenoise, urllib3, typing-extensions, sqlparse, portalocker, Pillow, omero-marshal, numpy, idna, gunicorn, charset-normalizer, certifi, requests, concurrent-log-handler, asgiref, omero-py, Django, django-cors-headers, omero-web
08:52:33 Attempting uninstall: numpy
08:52:33 Found existing installation: numpy 2.0.2
08:52:33 Uninstalling numpy-2.0.2:
08:52:33 Successfully uninstalled numpy-2.0.2
08:52:39 Successfully installed Django-4.2.16 Pillow-10.4.0 appdirs-1.4.4 asgiref-3.8.1 certifi-2024.8.30 charset-normalizer-3.3.2 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-pipeline-2.1.0 gunicorn-23.0.0 idna-3.10 numpy-1.26.4 omero-marshal-0.9.0 omero-py-5.19.5 omero-web-5.27.2 portalocker-2.10.1 pytz-2024.2 requests-2.32.3 sqlparse-0.5.1 typing-extensions-4.12.2 urllib3-1.26.20 whitenoise-6.7.0
08:52:40 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins8569797809359740024.sh
08:52:40 + source /home/settings.env
08:52:40 ++ OMERO_DB_HOST=pg
08:52:40 ++ OMERO_DB_USER=postgres
08:52:40 ++ OMERO_DB_PASS=
08:52:40 ++ OMERO_ROOT_PASS=omero
08:52:40 ++ OMERO_DATA_DIR=/OMERO
08:52:40 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
08:52:40 + OMERO_DB_NAME=OMERO-test-integration
08:52:40 + SRC=/home/omero/workspace/OMERO-test-integration/src
08:52:40 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
08:52:40 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
08:52:40 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
08:52:40 + '[' -e /home/omero/workspace/OMERO-test-integration/src/dist ']'
08:52:40 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
08:52:40 ++ deactivate nondestructive
08:52:40 ++ '[' -n '' ']'
08:52:40 ++ '[' -n '' ']'
08:52:40 ++ '[' -n /bin/bash -o -n '' ']'
08:52:40 ++ hash -r
08:52:40 ++ '[' -n '' ']'
08:52:40 ++ unset VIRTUAL_ENV
08:52:40 ++ '[' '!' nondestructive = nondestructive ']'
08:52:40 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
08:52:40 ++ export VIRTUAL_ENV
08:52:40 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:52:40 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:52:40 ++ export PATH
08:52:40 ++ '[' -n '' ']'
08:52:40 ++ '[' -z '' ']'
08:52:40 ++ _OLD_VIRTUAL_PS1=
08:52:40 ++ PS1='(.venv3) '
08:52:40 ++ export PS1
08:52:40 ++ '[' -n /bin/bash -o -n '' ']'
08:52:40 ++ hash -r
08:52:40 + omero admin stop
08:52:42 Waiting on shutdown. Use CTRL-C to exit
08:52:42 .+ deactivate
08:52:52 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
08:52:52 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:52:52 + export PATH
08:52:52 + unset _OLD_VIRTUAL_PATH
08:52:52 + '[' -n '' ']'
08:52:52 + '[' -n /bin/bash -o -n '' ']'
08:52:52 + hash -r
08:52:52 + '[' -n '' ']'
08:52:52 + unset VIRTUAL_ENV
08:52:52 + '[' '!' '' = nondestructive ']'
08:52:52 + unset -f deactivate
08:52:52 + sleep 5
08:52:57 + dropdb -f -h pg -U postgres OMERO-test-integration
08:52:59 + rm -rf /home/omero/workspace/OMERO-test-integration/config /home/omero/workspace/OMERO-test-integration/data /home/omero/workspace/OMERO-test-integration/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-test-integration/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/src /home/omero/workspace/OMERO-test-integration/version.properties
08:53:00 Copied 1 artifact from "OMERO-build" build number 192
08:53:00 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 189
08:53:01 Copied 2 artifacts from "OMERO-build-build" build number 200
08:53:01 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins12282425915943081268.sh
08:53:01 + source /home/settings.env
08:53:01 ++ OMERO_DB_HOST=pg
08:53:01 ++ OMERO_DB_USER=postgres
08:53:01 ++ OMERO_DB_PASS=
08:53:01 ++ OMERO_ROOT_PASS=omero
08:53:01 ++ OMERO_DATA_DIR=/OMERO
08:53:01 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
08:53:01 + export ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
08:53:01 + ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
08:53:01 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
08:53:01 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
08:53:01 + OMERO_DB_NAME=OMERO-test-integration
08:53:01 + OMERO_DATA_DIR=/home/omero/workspace/OMERO-test-integration/data
08:53:01 + mkdir -p /home/omero/workspace/OMERO-test-integration/data
08:53:01 + SRC=/home/omero/workspace/OMERO-test-integration/src
08:53:01 ++ ls openmicroscopy-5.6.3-513-c2479c27a8-ice36.zip
08:53:01 + ZIP_SRC=openmicroscopy-5.6.3-513-c2479c27a8-ice36.zip
08:53:01 + unzip openmicroscopy-5.6.3-513-c2479c27a8-ice36.zip
08:53:01 Archive: openmicroscopy-5.6.3-513-c2479c27a8-ice36.zip
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/.classpath-template
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/.github/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/.github/Pull_Request_Template.md
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/.github/workflows/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/.github/workflows/docker_build.yml
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/.github/workflows/release.yml
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/.github/workflows/source_build.yml
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/.github/workflows/update.yaml
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/.mailmap
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/.project
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/CMakeLists.txt
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/CONTRIBUTING.md
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/Dockerfile
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/LICENSE.txt
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/README.md
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/SUPPORT.md
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/build.bat
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08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/antlib/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/antlib/.classpath
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08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/antlib/resources/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/antlib/resources/excludebugs.xml
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/antlib/resources/global.xml
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/antlib/resources/hibernate.xml
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/antlib/resources/lifecycle.xml
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/antlib/resources/version.xml
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/antlib/scripts/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/antlib/scripts/parse_version
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/antlib/scripts/source-archive.py
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/build.xml
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/README.md
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08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/plugins/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/plugins/robot.py
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/resources/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/resources/robot.template
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/resources/web/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/resources/web/annotation.txt
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/resources/web/login.txt
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/resources/web/thumbs.txt
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/resources/web/tree.txt
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/resources/web/webadmin.txt
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/resources/well_sample_posXY.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/robot_setup.sh
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/annotate_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/center_right_panel_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/create_scenario.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/delete_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/download_options_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/filter_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/forms_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/history_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/map_annotations_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/post_copy_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/post_cut_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/post_drag_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/post_manage_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/rdef_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/search.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/search_annotation_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/show_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/spw_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/tagging_test.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/view_image.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/webadmin_create_group_and_user.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/webadmin_login.robot
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tests/ui/testcases/web/webadmin_user_settings.robot
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/CMakeLists.txt
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/cmake/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/cmake/CompilerChecks.cmake
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/cmake/FindIce.cmake
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/cmake/GTest.cmake
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/cmake/TemplateCmdConfig.cmake.in
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/cmake/TemplateConfig.cmake.in
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/cmake/TemplateShellConfig.cmake.in
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/cmake/Version.cmake
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/CHANGES
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/CMakeLists.txt
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/CONTRIBUTORS
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/LICENSE
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/README
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/internal_utils.cmake
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-death-test.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-message.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h.pump
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-printers.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-spi.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-test-part.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-typed-test.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_pred_impl.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_prod.h
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-death-test-internal.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-filepath.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-internal.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-linked_ptr.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h.pump
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-port.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-string.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h.pump
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h.pump
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/prime_tables.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample10_unittest.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1_unittest.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2_unittest.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3-inl.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3_unittest.cc
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08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample8_unittest.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample9_unittest.cc
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/fuse_gtest_files.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gen_gtest_pred_impl.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gtest-config.in
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08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/Makefile
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-all.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-death-test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-filepath.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-internal-inl.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-port.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-printers.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-test-part.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-typed-test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest_main.cc
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_ex_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-filepath_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-linked_ptr_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-listener_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-message_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-options_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test2_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-port_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-printers_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-test-part_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-tuple_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test2_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-unittest-api_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_all_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_environment_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_main_unittest.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_no_test_unittest.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test_golden_lin.txt
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_pred_impl_unittest.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_premature_exit_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_prod_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_repeat_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_shuffle_test.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_shuffle_test_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_sole_header_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_stress_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_test_utils.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_ex_test.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_test.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_test_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_uninitialized_test.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_uninitialized_test_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_unittest.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfile1_test_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfile2_test_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfiles_test.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_output_unittest.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_output_unittest_.cc
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_test_utils.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/ext/gtest-1.7.0/test/production.cc
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08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/README.h
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/ClientErrors.cpp
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08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/IceNoWarnPush.h
08:53:01 extracting: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/IcePortPop.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/IcePortPush.h
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08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/clientF.cpp
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/clientF.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/conversions.cpp
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/conversions.h
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/internal/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/internal/fixes.h
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/min.h
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/model/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/src/omero/model/DetailsI.cpp
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08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroFS/test/integration/
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08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/chown/PermissionsTest.java
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08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/delete/SpwDeleteTest.java
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/gateway/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/gateway/AdminFacilityTest.java
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08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/gateway/MetadataFacilityTest.java
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/gateway/ROIFacilityTest.java
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/gateway/RawDataFacilityTest.java
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/gateway/SearchFacilityTest.java
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/gateway/TablesFacilityTest.java
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/thumbnail/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/thumbnail/BatchLoadingTest.java
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/thumbnail/SingleFileTest.java
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/thumbnail/SkipThumbnailsPermissionsTest.java
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroJava/test/integration/thumbnail/Utils.java
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/bin/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/bin/omero
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08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/bin/setpythonpath.bat
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/bin/winconfig.bat
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/build.xml
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/examples/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/examples/createSession.py
08:53:01 extracting: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/examples/load.omero
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/examples/projection_1.py
08:53:01 extracting: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/examples/submit.omero
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/examples/upload.omero
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/ice.config
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/ivy.xml
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/manualtests/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/manualtests/README.txt
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/manualtests/populate_roi_test.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/setup.py
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/
08:53:01 extracting: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/__init__.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/conftest.py
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/
08:53:01 extracting: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/__init__.py
08:53:01 extracting: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/client_ctors.cfg
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/
08:53:01 extracting: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/__init__.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/cli.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/test_admin.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/test_chgrp.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/test_chown.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/test_cleanse.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/test_db.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/test_delete.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/test_download.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/test_duplicate.py
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08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/test_pyramids.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/test_script.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/test_search.py
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08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/test_upload.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/clitest/test_user.py
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/fstest/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/fstest/test_rename.py
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/__init__.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_annotation.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_chgrp.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_chmod.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_chown.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_config_service.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_connection.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_delete.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_fs.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_get_objects.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_helpers.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_image.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_image_wrapper.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_missing_pyramid.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_multi_group.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_performance.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_permissions.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_pixels.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_plate_wrapper.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_rdefs.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_search_objects.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_services.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_ticket10618.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_user.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/gatewaytest/test_wrapper.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/helpers.py
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/metadata/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context.yml
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns.csv
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08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns2.yml
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns2_empty.yml
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/metadata/bulk_to_map_annotation_context_ns2_fail.yml
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/metadata/test_metadata_mapannotations.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/metadata/test_populate.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/metadata/test_pydict_text.py
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptsharness/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptsharness/definition.cfg
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptsharness/definition.py
08:53:01 extracting: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptsharness/simple_script.cfg
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptsharness/simple_script.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptsharness/test_harness.py
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptstest/
08:53:01 extracting: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptstest/__init__.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptstest/script.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_cli.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_coverage.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_inputs.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_ping.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_rand.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_repo.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_roi_handling_utils.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/scriptstest/test_script_utils.py
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/tablestest/
08:53:01 extracting: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/tablestest/service-reference-dev_4_4_5.h5.bz2
08:53:01 extracting: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/tablestest/service-reference-dev_5_3_4.h5.bz2
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/tablestest/test_backwards_compatibility.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/tablestest/test_populate_metadata.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/tablestest/test_service.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/tablestest/test_tables.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/test_admin.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/test_annotation.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/test_annotationPermissions.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/test_chgrp.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/test_chmod.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/test_chown.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/test_client_ctors.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/test_clientusage.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/test_cmdcallback.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/test_counts.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/test_delete.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/test_exporter.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroPy/test/integration/test_files.py
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08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__10/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__11/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__2/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__3/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__4/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__5/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__6/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__7/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__8/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__9/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3__4/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3__5/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3__6/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3__7/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4.1__0/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4.2__0/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4.2__0/t/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4.3__0/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4.4__0/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4__0/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.0__0/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.1__1/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.2__0/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.3__0/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4DEV__1/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4DEV__2/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4DEV__3/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
08:53:01 creating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4__0/
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4__0/psql-header.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4__0/schema.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/sql/psql/OMERO5.4__0/views.sql
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/test.xml
08:53:01 inflating: openmicroscopy-5.6.3-513-c2479c27a8-ice36/update_dependencies.sh
08:53:01 extracting: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/antlib/resources/gitversion.xml
08:53:01 extracting: openmicroscopy-5.6.3-513-c2479c27a8-ice36/components/tools/OmeroCpp/cmake/GitVersion.cmake
08:53:01 + rm -f openmicroscopy-5.6.3-513-c2479c27a8-ice36.zip
08:53:01 + mv /home/omero/workspace/OMERO-test-integration/openmicroscopy-5.6.3-513-c2479c27a8-ice36 /home/omero/workspace/OMERO-test-integration/src
08:53:01 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
08:53:01 ++ deactivate nondestructive
08:53:01 ++ '[' -n '' ']'
08:53:01 ++ '[' -n '' ']'
08:53:01 ++ '[' -n /bin/bash -o -n '' ']'
08:53:01 ++ hash -r
08:53:01 ++ '[' -n '' ']'
08:53:01 ++ unset VIRTUAL_ENV
08:53:01 ++ '[' '!' nondestructive = nondestructive ']'
08:53:01 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
08:53:01 ++ export VIRTUAL_ENV
08:53:01 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:53:01 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:53:01 ++ export PATH
08:53:01 ++ '[' -n '' ']'
08:53:01 ++ '[' -z '' ']'
08:53:01 ++ _OLD_VIRTUAL_PS1=
08:53:01 ++ PS1='(.venv3) '
08:53:01 ++ export PS1
08:53:01 ++ '[' -n /bin/bash -o -n '' ']'
08:53:01 ++ hash -r
08:53:01 + for x in *.tar.gz
08:53:01 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
08:53:01 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
08:53:01 Installing build dependencies: started
08:53:03 Installing build dependencies: finished with status 'done'
08:53:03 Getting requirements to build wheel: started
08:53:04 Getting requirements to build wheel: finished with status 'done'
08:53:04 Preparing metadata (pyproject.toml): started
08:53:04 Preparing metadata (pyproject.toml): finished with status 'done'
08:53:04 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5)
08:53:04 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
08:53:04 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
08:53:04 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
08:53:04 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
08:53:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0)
08:53:04 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
08:53:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
08:53:04 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
08:53:04 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
08:53:04 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
08:53:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
08:53:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30)
08:53:04 Building wheels for collected packages: omero-dropbox
08:53:04 Building wheel for omero-dropbox (pyproject.toml): started
08:53:04 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
08:53:04 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49056 sha256=f4a04d8d1d33acf2583241333aefaa5334cf7e216be08ba0edcb2badf8b48e05
08:53:04 Stored in directory: /home/omero/.cache/pip/wheels/ef/93/2d/d44d5be6e4d9a58eecdbeb6e3385179e95ae7b80719377e781
08:53:04 Successfully built omero-dropbox
08:53:04 Installing collected packages: omero-dropbox
08:53:04 Successfully installed omero-dropbox-5.7.1.dev0
08:53:04 + for x in *.tar.gz
08:53:04 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
08:53:05 Processing ./omero_marshal-0.9.1.dev0.tar.gz
08:53:05 Installing build dependencies: started
08:53:06 Installing build dependencies: finished with status 'done'
08:53:06 Getting requirements to build wheel: started
08:53:07 Getting requirements to build wheel: finished with status 'done'
08:53:07 Preparing metadata (pyproject.toml): started
08:53:07 Preparing metadata (pyproject.toml): finished with status 'done'
08:53:07 Building wheels for collected packages: omero_marshal
08:53:07 Building wheel for omero_marshal (pyproject.toml): started
08:53:07 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
08:53:07 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88030 sha256=0d7b6c12f268380fc0f6f0aedd7295c1d58a8ac46c86911dc4ce9f02fa7d0a0c
08:53:07 Stored in directory: /home/omero/.cache/pip/wheels/1a/3a/cd/b39392f5c8ba80a35bab4a0f80f93c7c4729cce6868750f4f3
08:53:08 Successfully built omero_marshal
08:53:08 Installing collected packages: omero_marshal
08:53:08 Attempting uninstall: omero_marshal
08:53:08 Found existing installation: omero-marshal 0.9.0
08:53:08 Uninstalling omero-marshal-0.9.0:
08:53:08 Successfully uninstalled omero-marshal-0.9.0
08:53:08 Successfully installed omero_marshal-0.9.1.dev0
08:53:08 + for x in *.tar.gz
08:53:08 + pip install -U omero_py-5.19.6.dev0.tar.gz
08:53:08 Processing ./omero_py-5.19.6.dev0.tar.gz
08:53:09 Installing build dependencies: started
08:53:10 Installing build dependencies: finished with status 'done'
08:53:10 Getting requirements to build wheel: started
08:53:10 Getting requirements to build wheel: finished with status 'done'
08:53:10 Preparing metadata (pyproject.toml): started
08:53:11 Preparing metadata (pyproject.toml): finished with status 'done'
08:53:11 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20)
08:53:11 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4)
08:53:11 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0)
08:53:11 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4)
08:53:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (10.4.0)
08:53:11 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2)
08:53:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5)
08:53:11 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3)
08:53:11 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1)
08:53:11 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.3.2)
08:53:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10)
08:53:11 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30)
08:53:11 Building wheels for collected packages: omero-py
08:53:11 Building wheel for omero-py (pyproject.toml): started
08:53:12 Building wheel for omero-py (pyproject.toml): finished with status 'done'
08:53:12 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783251 sha256=493837aa813562a553f9f4435d2d227ffd0fe1722eb069b6e29b37780768d27c
08:53:12 Stored in directory: /home/omero/.cache/pip/wheels/0e/51/53/0205c66cdbe856d4da23e6b9c5d613133b733ef358e57fa643
08:53:12 Successfully built omero-py
08:53:12 Installing collected packages: omero-py
08:53:12 Attempting uninstall: omero-py
08:53:12 Found existing installation: omero-py 5.19.5
08:53:12 Uninstalling omero-py-5.19.5:
08:53:12 Successfully uninstalled omero-py-5.19.5
08:53:14 Successfully installed omero-py-5.19.6.dev0
08:53:14 + for x in *.tar.gz
08:53:14 + pip install -U omero_scripts-5.8.4.dev0.tar.gz
08:53:15 Processing ./omero_scripts-5.8.4.dev0.tar.gz
08:53:15 Installing build dependencies: started
08:53:16 Installing build dependencies: finished with status 'done'
08:53:16 Getting requirements to build wheel: started
08:53:17 Getting requirements to build wheel: finished with status 'done'
08:53:17 Preparing metadata (pyproject.toml): started
08:53:17 Preparing metadata (pyproject.toml): finished with status 'done'
08:53:17 Building wheels for collected packages: omero-scripts
08:53:17 Building wheel for omero-scripts (pyproject.toml): started
08:53:17 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
08:53:17 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116644 sha256=97146b024337a931c38c13d8d0cfb7cc738fd2e9b15176506a85ee844284b888
08:53:17 Stored in directory: /home/omero/.cache/pip/wheels/28/3e/92/6522b883548147569f7375ed3132e6964d3645235d0b7e283f
08:53:17 Successfully built omero-scripts
08:53:17 Installing collected packages: omero-scripts
08:53:17 Successfully installed omero-scripts-5.8.4.dev0
08:53:17 + for x in *.tar.gz
08:53:17 + pip install -U omero_web-5.27.3.dev0.tar.gz
08:53:18 Processing ./omero_web-5.27.3.dev0.tar.gz
08:53:18 Installing build dependencies: started
08:53:20 Installing build dependencies: finished with status 'done'
08:53:20 Getting requirements to build wheel: started
08:53:20 Getting requirements to build wheel: finished with status 'done'
08:53:20 Preparing metadata (pyproject.toml): started
08:53:20 Preparing metadata (pyproject.toml): finished with status 'done'
08:53:20 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0)
08:53:20 Requirement already satisfied: concurrent-log-handler>=0.9.20 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.25)
08:53:20 Requirement already satisfied: Django<4.3,>=4.2.3 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (4.2.16)
08:53:20 Requirement already satisfied: django-pipeline==2.1.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.1.0)
08:53:20 Requirement already satisfied: django-cors-headers==3.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (3.7.0)
08:53:20 Collecting django-csp (from omero-web==5.27.3.dev0)
08:53:20 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
08:53:20 Requirement already satisfied: whitenoise>=5.3.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (6.7.0)
08:53:20 Requirement already satisfied: gunicorn>=19.3 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (23.0.0)
08:53:20 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0)
08:53:20 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (10.4.0)
08:53:20 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2)
08:53:20 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1)
08:53:20 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1)
08:53:20 Requirement already satisfied: asgiref<4,>=3.6.0 in ./.venv3/lib/python3.9/site-packages (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) (3.8.1)
08:53:20 Requirement already satisfied: sqlparse>=0.3.1 in ./.venv3/lib/python3.9/site-packages (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) (0.5.1)
08:53:20 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20)
08:53:20 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4)
08:53:20 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0)
08:53:20 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4)
08:53:20 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2)
08:53:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5)
08:53:20 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3)
08:53:20 Requirement already satisfied: typing-extensions>=4 in ./.venv3/lib/python3.9/site-packages (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) (4.12.2)
08:53:21 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.3.2)
08:53:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10)
08:53:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30)
08:53:21 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
08:53:21 Building wheels for collected packages: omero-web
08:53:21 Building wheel for omero-web (pyproject.toml): started
08:53:22 Building wheel for omero-web (pyproject.toml): finished with status 'done'
08:53:22 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766671 sha256=6f1abfe9b442077e4ea078c893ae3fe606a23cd216755537a84e5b57452f257a
08:53:22 Stored in directory: /home/omero/.cache/pip/wheels/f0/b3/64/dc77f8e1a2385b2f8ef248e63a59b8ba8d51c2c928e147e9d6
08:53:22 Successfully built omero-web
08:53:22 Installing collected packages: django-csp, omero-web
08:53:22 Attempting uninstall: omero-web
08:53:22 Found existing installation: omero-web 5.27.2
08:53:22 Uninstalling omero-web-5.27.2:
08:53:22 Successfully uninstalled omero-web-5.27.2
08:53:22 Successfully installed django-csp-3.8 omero-web-5.27.3.dev0
08:53:22 + pip install omero-certificates
08:53:23 Collecting omero-certificates
08:53:23 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
08:53:23 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.6.dev0)
08:53:23 Collecting distro==1.8.0 (from omero-certificates)
08:53:23 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
08:53:23 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
08:53:23 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
08:53:23 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
08:53:23 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
08:53:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0)
08:53:23 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
08:53:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
08:53:23 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
08:53:23 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
08:53:23 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
08:53:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
08:53:23 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30)
08:53:23 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
08:53:23 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
08:53:23 Installing collected packages: distro, omero-certificates
08:53:23 Successfully installed distro-1.8.0 omero-certificates-0.3.2
08:53:24 + for x in omero-cli-duplicate
08:53:24 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
08:53:24 Collecting omero-cli-duplicate
08:53:24 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-ffsvdylk/omero-cli-duplicate_0340f1492e6c466a9c649e222e6a5889
08:53:24 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-ffsvdylk/omero-cli-duplicate_0340f1492e6c466a9c649e222e6a5889
08:53:27 Running command git checkout -b merge_ci --track origin/merge_ci
08:53:28 Switched to a new branch 'merge_ci'
08:53:28 branch 'merge_ci' set up to track 'origin/merge_ci'.
08:53:28 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 05b11765c85465917e1e3f455c37112a79039bd0
08:53:28 Installing build dependencies: started
08:53:29 Installing build dependencies: finished with status 'done'
08:53:29 Getting requirements to build wheel: started
08:53:30 Getting requirements to build wheel: finished with status 'done'
08:53:30 Preparing metadata (pyproject.toml): started
08:53:30 Preparing metadata (pyproject.toml): finished with status 'done'
08:53:30 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.6.dev0)
08:53:30 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
08:53:30 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
08:53:30 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
08:53:30 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
08:53:30 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0)
08:53:30 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
08:53:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
08:53:30 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
08:53:30 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
08:53:30 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
08:53:30 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
08:53:30 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30)
08:53:30 Building wheels for collected packages: omero-cli-duplicate
08:53:30 Building wheel for omero-cli-duplicate (pyproject.toml): started
08:53:30 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
08:53:30 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=b78d653b49250c58ed066666b8386a078eedf61818adbccdc0a5dcbd7e5c2b0a
08:53:30 Stored in directory: /tmp/pip-ephem-wheel-cache-5etlg8mp/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
08:53:30 Successfully built omero-cli-duplicate
08:53:30 Installing collected packages: omero-cli-duplicate
08:53:30 Successfully installed omero-cli-duplicate-0.4.1.dev0
08:53:30 + source /home/omero/workspace/OMERO-test-integration/src/docs/hudson/functions.sh
08:53:30 + /home/omero/workspace/OMERO-test-integration/src/build.py build-default test-compile
08:53:31 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:53:31 Buildfile: /home/omero/workspace/OMERO-test-integration/src/build.xml
08:53:32
08:53:32 check-ivy:
08:53:32 Creating /home/omero/workspace/OMERO-test-integration/src/etc/local.properties
08:53:32 Created dir: /home/omero/workspace/OMERO-test-integration/src/target
08:53:32 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:53:32 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
08:53:33
08:53:33 build-scons:
08:53:33 Expanding: /home/omero/workspace/OMERO-test-integration/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-test-integration/src/target/scons
08:53:33
08:53:33 build:
08:53:33 No sub-builds to iterate on
08:53:33 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
08:53:33 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
08:53:33 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
08:53:33 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
08:53:33
08:53:33 tools-init:
08:53:33 no-op
08:53:33
08:53:33 retrieve:
08:53:33 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:53:33 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
08:53:35 WARNING: An illegal reflective access operation has occurred
08:53:35 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-test-integration/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
08:53:35 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
08:53:35 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
08:53:35 WARNING: All illegal access operations will be denied in a future release
08:54:06
08:54:06 prepare:
08:54:06 Preparing: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs
08:54:06 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/.done
08:54:06 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/src
08:54:06 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
08:54:06 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
08:54:06 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
08:54:06 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/reports
08:54:06 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
08:54:06 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
08:54:06 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
08:54:06 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
08:54:06 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
08:54:06 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
08:54:06 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
08:54:06 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
08:54:06
08:54:06 pre-compile:
08:54:06 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
08:54:06 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
08:54:06 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
08:54:07 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
08:54:07 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
08:54:07
08:54:07 compile:
08:54:07 no-op
08:54:07
08:54:07 package:
08:54:07 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/omero_client.jar
08:54:07
08:54:07 install:
08:54:07 :: delivering :: omero#omero_client;working@db6de8e9ca4d :: 5.6.3-513-c2479c27a8-ice36-ice36 :: integration :: Thu Oct 03 08:53:33 UTC 2024
08:54:07 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/ivy.xml
08:54:07 :: publishing :: omero#omero_client
08:54:07 published omero_client to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-513-c2479c27a8-ice36-ice36/omero_client-5.6.3-513-c2479c27a8-ice36-ice36.jar
08:54:07 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-513-c2479c27a8-ice36-ice36/omero_client-5.6.3-513-c2479c27a8-ice36-ice36.xml
08:54:07 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
08:54:07 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
08:54:08
08:54:08 retrieve:
08:54:08 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:54:08 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
08:54:08 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools...
08:54:08
08:54:08 dist:
08:54:08 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/service-classes/META-INF
08:54:08 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/server
08:54:08 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
08:54:08 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
08:54:08 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/scripts
08:54:08 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/dist
08:54:08 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-test-integration/src/dist
08:54:08 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests...
08:54:08 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
08:54:08
08:54:08 copy-licenses:
08:54:08 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
08:54:08 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/share
08:54:08 Copying 44 files to /home/omero/workspace/OMERO-test-integration/src/dist/share
08:54:08
08:54:08 copy-history:
08:54:08 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
08:54:08
08:54:08 copy-etc:
08:54:08 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/dist/etc
08:54:08 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc/templates
08:54:08
08:54:08 copy-sql:
08:54:08 Copying 60 files to /home/omero/workspace/OMERO-test-integration/src/dist
08:54:15
08:54:15 copy-server:
08:54:15 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
08:54:15
08:54:15 copy-client:
08:54:15 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/client
08:54:16 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
08:54:16
08:54:16 update-version:
08:54:16 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc
08:54:16
08:54:16 create-workdirs:
08:54:16 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/etc/grid
08:54:16 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/var
08:54:16
08:54:16 copy-luts:
08:54:16 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
08:54:16 Copying 39 files to /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
08:54:16
08:54:16 test-compile:
08:54:16 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
08:54:16 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
08:54:16 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
08:54:16 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
08:54:16 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
08:54:16 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
08:54:17 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
08:54:17 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
08:54:17
08:54:17 testng-init:
08:54:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:54:17 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
08:54:20 08:54:20,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
08:54:20 08:54:20,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1c5123ca - No custom configurators were discovered as a service.
08:54:20 08:54:20,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1c5123ca - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
08:54:20 08:54:20,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1c5123ca - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
08:54:20 08:54:20,565 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
08:54:20 08:54:20,566 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
08:54:20 08:54:20,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1c5123ca - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
08:54:20 08:54:20,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1c5123ca - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
08:54:20 08:54:20,568 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1c5123ca - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
08:54:20 08:54:20,569 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
08:54:20 08:54:20,569 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
08:54:20 08:54:20,570 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6a75b8d3 - Resource [logback.xml] occurs multiple times on the classpath.
08:54:20 08:54:20,570 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6a75b8d3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
08:54:20 08:54:20,570 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6a75b8d3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
08:54:20 08:54:20,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
08:54:20 08:54:20,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
08:54:20 08:54:20,925 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
08:54:20 08:54:20,927 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@42ec6e3 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
08:54:20 08:54:20,927 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@42ec6e3 - Please move "immediateFlush" property into the enclosing appender.
08:54:20 08:54:20,988 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@42ec6e3 - Setting the "immediateFlush" property of the enclosing appender to true
08:54:20 08:54:20,989 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
08:54:20 08:54:20,989 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
08:54:20 08:54:20,989 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
08:54:20 08:54:20,989 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
08:54:20 08:54:20,989 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
08:54:20 08:54:20,989 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
08:54:20 08:54:20,991 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@37c48490 - End of configuration.
08:54:20 08:54:20,993 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@221ebed1 - Registering current configuration as safe fallback point
08:54:20 08:54:20,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1c5123ca - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 425 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
08:54:21
08:54:21 lifecycle.test-compile:
08:54:21 Copying 3 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
08:54:21 Compiling 85 source files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
08:54:21 warning: [options] bootstrap class path not set in conjunction with -source 8
08:54:22 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:54:22 import omero.grid.RawAccessRequest;
08:54:22 ^
08:54:22 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:54:22 import omero.grid.RawAccessRequest;
08:54:22 ^
08:54:22 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:54:22 import omero.grid.RawAccessRequest;
08:54:22 ^
08:54:22 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
08:54:22 import omero.model.ImportJob;
08:54:22 ^
08:54:22 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:54:22 import omero.model.ImportJobI;
08:54:22 ^
08:54:23 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
08:54:23 IObject link = (IObject) linkClass.newInstance();
08:54:23 ^
08:54:23 where T is a type-variable:
08:54:23 T extends Object declared in class Class
08:54:23 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
08:54:23 T copy = (T) obj.getClass().newInstance();
08:54:23 ^
08:54:23 where T is a type-variable:
08:54:23 T extends Object declared in class Class
08:54:23 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:54:23 RawAccessRequest raw = new RawAccessRequest();
08:54:23 ^
08:54:23 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:54:23 RawAccessRequest raw = new RawAccessRequest();
08:54:23 ^
08:54:23 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:54:23 raw.repoUuid = legacy.root().getHash().getValue();
08:54:23 ^
08:54:23 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
08:54:23 raw.command = "rm";
08:54:23 ^
08:54:23 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
08:54:23 raw.args = Arrays.asList(path);
08:54:23 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
08:54:24 final IObject link = linkClass.newInstance();
08:54:24 ^
08:54:24 where T is a type-variable:
08:54:24 T extends Object declared in class Class
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
08:54:24 originalLink.setChild(annotationClass.newInstance());
08:54:24 ^
08:54:24 where T is a type-variable:
08:54:24 T extends Object declared in class Class
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:54:24 RoiResult r = svc.findByImage(id, new RoiOptions());
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:54:24 final RawAccessRequest request = new RawAccessRequest();
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:54:24 final RawAccessRequest request = new RawAccessRequest();
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:54:24 request.repoUuid = repo.root().getHash().getValue();
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
08:54:24 request.command = "exists";
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
08:54:24 request.args = Collections.singletonList(dirPath);
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:54:24 final RawAccessRequest request = new RawAccessRequest();
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:54:24 final RawAccessRequest request = new RawAccessRequest();
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:54:24 request.repoUuid = repo.root().getHash().getValue();
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
08:54:24 request.command = "exists";
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
08:54:24 request.args = Collections.singletonList(dirName);
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
08:54:24 final ImportJob importJob = new ImportJobI();
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:54:24 final ImportJob importJob = new ImportJobI();
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
08:54:24 importJob.setImageName(omero.rtypes.rstring(name));
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
08:54:24 importJob.setImageDescription(omero.rtypes.rstring(desc));
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:54:24 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:54:24 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:54:24 final String savedName = sent.getImageName().getValue().toString();
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:54:24 final String savedDesc = sent.getImageDescription().getValue().toString();
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:54:24 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:54:24 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:54:24 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
08:54:24 ^
08:54:24 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:54:24 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
08:54:24 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:54:25 RoiResult r = svc.findByImage(image.getId().getValue(),
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:54:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:54:25 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:54:25 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:54:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
08:54:25 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:54:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
08:54:25 table = svc.getTable(f.getId().getValue());
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:54:25 RoiResult r = svc.findByImage(image.getId().getValue(),
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:54:25 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:54:25 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:54:25 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:54:25 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
08:54:25 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:54:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:54:25 svc.getShapeStatsRestricted(
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:54:25 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:54:25 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:54:25 request.typesToIgnore = Collections.singletonList("TagAnnotation");
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:54:25 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:54:25 request.typesToIgnore = Collections.singletonList("Annotation");
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:54:25 request.typesToIgnore = Collections.singletonList("Annotation");
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:54:25 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:54:25 p2.setRelatedTo(p1);
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:54:25 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:54:25 pixels1.setRelatedTo(pixels2);
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:54:25 Pixels pixels = pixels1.getRelatedTo();
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:54:25 Assert.assertNull(pixels1.getRelatedTo());
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:54:25 pixels1.setRelatedTo(pixels2);
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:54:25 Pixels pixels = pixels1.getRelatedTo();
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:54:25 Assert.assertNull(pixels1.getRelatedTo());
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:54:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:54:25 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:54:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:54:25 ^
08:54:25 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:54:25 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:54:25 ^
08:54:25 Note: Some input files use unchecked or unsafe operations.
08:54:25 Note: Recompile with -Xlint:unchecked for details.
08:54:25 88 warnings
08:54:26 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_693402018.tmp
08:54:26 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.jar
08:54:26 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
08:54:26 :: delivering :: omero#OmeroJava-test;working@db6de8e9ca4d :: 5.6.3-513-c2479c27a8-ice36-ice36 :: integration :: Thu Oct 03 08:54:17 UTC 2024
08:54:26 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
08:54:26 :: publishing :: omero#OmeroJava-test
08:54:26 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-c2479c27a8-ice36-ice36.jar
08:54:26 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-c2479c27a8-ice36-ice36.xml
08:54:26
08:54:26 BUILD SUCCESSFUL
08:54:26 Total time: 54 seconds
08:54:26 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
08:54:26 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
08:54:26 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
08:54:26 + omero config set omero.db.name OMERO-test-integration
08:54:27 + omero config set omero.db.host pg
08:54:28 + omero config set omero.db.user postgres
08:54:29 + omero config set omero.db.poolsize 50
08:54:30 + omero config set omero.jvmcfg.max_system_memory.blitz 64000
08:54:31 + omero config set omero.data.dir /home/omero/workspace/OMERO-test-integration/data
08:54:32 + omero config set omero.ports.prefix 1
08:54:33 + omero config set omero.web.server_list '[["testintegration",14064,"testintegration"]]'
08:54:34 + omero certificates
08:54:35 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
08:54:35 certificates created: /home/omero/workspace/OMERO-test-integration/data/certs/server.key /home/omero/workspace/OMERO-test-integration/data/certs/server.pem /home/omero/workspace/OMERO-test-integration/data/certs/server.p12
08:54:35 + createdb -h pg -U postgres OMERO-test-integration
08:54:36 + omero db script -f dbsetup.sql '' '' omero
08:54:37 WARNING: Positional arguments are deprecated
08:54:37 Using OMERO5.4 for version
08:54:37 Using 0 for patch
08:54:37 Using password from commandline
08:54:38 + psql -h pg -U postgres -d OMERO-test-integration -f dbsetup.sql
08:54:38 BEGIN
08:54:38 CREATE FUNCTION
08:54:38 CREATE FUNCTION
08:54:38 assert_db_server_prerequisites
08:54:38 --------------------------------
08:54:38
08:54:38 (1 row)
08:54:38
08:54:38 DROP FUNCTION
08:54:38 DROP FUNCTION
08:54:38 CREATE DOMAIN
08:54:38 CREATE DOMAIN
08:54:38 CREATE DOMAIN
08:54:38 CREATE DOMAIN
08:54:38 CREATE DOMAIN
08:54:38 CREATE TYPE
08:54:38 CREATE TYPE
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08:54:39 psql:dbsetup.sql:2842: NOTICE: identifier "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapco"
08:54:39 ALTER TABLE
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08:54:39 psql:dbsetup.sql:4712: NOTICE: identifier "fklogicalchannel_photometricinterpretation_photometricinterpretation" will be truncated to "fklogicalchannel_photometricinterpretation_photometricinterpret"
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08:54:39 psql:dbsetup.sql:5697: NOTICE: identifier "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcont"
08:54:39 ALTER TABLE
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08:54:39 CREATE TABLE
08:54:39 DROP TABLE
08:54:39 CREATE VIEW
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08:54:39 DROP TABLE
08:54:39 CREATE VIEW
08:54:39 DROP TABLE
08:54:39 CREATE VIEW
08:54:39 CREATE FUNCTION
08:54:39 CREATE TRIGGER
08:54:39 CREATE FUNCTION
08:54:39 CREATE TRIGGER
08:54:39 CREATE FUNCTION
08:54:39 CREATE TRIGGER
08:54:39 CREATE FUNCTION
08:54:39 CREATE TRIGGER
08:54:39 CREATE FUNCTION
08:54:39 CREATE TRIGGER
08:54:39 CREATE FUNCTION
08:54:39 CREATE TRIGGER
08:54:39 CREATE FUNCTION
08:54:39 CREATE TRIGGER
08:54:39 CREATE FUNCTION
08:54:39 CREATE TRIGGER
08:54:39 CREATE FUNCTION
08:54:39 CREATE TRIGGER
08:54:39 CREATE FUNCTION
08:54:39 CREATE TRIGGER
08:54:39 CREATE FUNCTION
08:54:39 CREATE TRIGGER
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
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08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
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08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
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08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
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08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
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08:54:39 CREATE INDEX
08:54:39 CREATE INDEX
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08:54:39 CREATE INDEX
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08:54:39 CREATE INDEX
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08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
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08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE FUNCTION
08:54:40 SET CONSTRAINTS
08:54:40 CREATE FUNCTION
08:54:40 CREATE SEQUENCE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 CREATE INDEX
08:54:40 CREATE FUNCTION
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE SEQUENCE
08:54:40 INSERT 0 1
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE TABLE
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 INSERT 0 1
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 INSERT 0 1
08:54:40 INSERT 0 1
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08:54:40 INSERT 0 1
08:54:40 UPDATE 1
08:54:40 UPDATE 1
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 INSERT 0 1
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08:54:40 UPDATE 1
08:54:40 UPDATE 1
08:54:40 UPDATE 1
08:54:40 UPDATE 1
08:54:40 UPDATE 1
08:54:40 UPDATE 1
08:54:40 UPDATE 1
08:54:40 UPDATE 1
08:54:40 UPDATE 1
08:54:40 UPDATE 1
08:54:40 UPDATE 1
08:54:40 ALTER TABLE
08:54:40 CREATE FUNCTION
08:54:40 CREATE TABLE
08:54:40 INSERT 0 1
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 CREATE INDEX
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 ALTER TABLE
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE TABLE
08:54:40 INSERT 0 1
08:54:40 INSERT 0 1
08:54:40 CREATE TABLE
08:54:40 INSERT 0 1
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE TABLE
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE INDEX
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 DROP TABLE
08:54:40 DROP TABLE
08:54:40 DROP TABLE
08:54:40 DROP TABLE
08:54:40 DROP TABLE
08:54:40 CREATE VIEW
08:54:40 CREATE VIEW
08:54:40 CREATE VIEW
08:54:40 CREATE VIEW
08:54:40 CREATE VIEW
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 ALTER TABLE
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE TABLE
08:54:40 CREATE INDEX
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE FUNCTION
08:54:40 CREATE FUNCTION
08:54:40 CREATE TRIGGER
08:54:40 CREATE TRIGGER
08:54:40 CREATE INDEX
08:54:40 UPDATE 1
08:54:40 COMMIT
08:54:40 + rm dbsetup.sql
08:54:40 + export OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
08:54:40 + OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
08:54:40 + mkdir -p /home/omero/workspace/OMERO-test-integration/config/blitz
08:54:40 + cp /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz
08:54:40 + for f in $OMERO_PROFILE/blitz/*
08:54:40 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example .example
08:54:40 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.xml
08:54:40 + for f in $OMERO_PROFILE/blitz/*
08:54:40 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example .example
08:54:40 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.xml
08:54:40 + omero config set omero.mail.config true
08:54:42 + omero config set omero.mail.fake true
08:54:43 + omero config set omero.mail.port 2525
08:54:44 + BUILD_ID=DONT_KILL_ME
08:54:44 + omero admin start
08:54:53 No descriptor given. Using etc/grid/default.xml
08:55:02 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/master
08:55:02 Initializing /home/omero/workspace/OMERO-test-integration/src/dist/var/log
08:55:02 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/registry
08:55:02 Waiting on startup. Use CTRL-C to exit
08:55:02 + omero admin waitup
08:55:03 Waiting on startup. Use CTRL-C to exit
08:55:03 + omero admin diagnostics
08:55:04
08:55:04 ================================================================================
08:55:04 OMERO Diagnostics (admin)
08:55:04 ================================================================================
08:55:04
08:55:04 Commands: java -version 11.0.24 (/usr/bin/java)
08:55:04 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-test-integration/.venv3/bin/python)
08:55:04 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
08:55:04 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
08:55:04 Commands: psql --version 16.4 (/usr/bin/psql)
08:55:04 Commands: openssl version 3.0.71 (/usr/bin/openssl)
08:55:04
08:55:04 Component: OMERO.py 5.19.6.dev0
08:55:04 Component: OMERO.server 5.6.3-513-c2479c27a8-ice36-ice36
08:55:04
08:55:04 Server: icegridnode running
08:55:04 Server: Blitz-0 active (pid = 335172, enabled)
08:55:05 Server: DropBox activating (enabled)
08:55:05 Server: FileServer active (pid = 335214, enabled)
08:55:05 Server: Indexer-0 activating (enabled)
08:55:05 Server: MonitorServer active (pid = 335204, enabled)
08:55:05 Server: OMERO.Glacier2 active (pid = 335227, enabled)
08:55:05 Server: OMERO.IceStorm active (pid = 335247, enabled)
08:55:05 Server: PixelData-0 activating (enabled)
08:55:05 Server: Processor-0 activating (enabled)
08:55:05 Server: Tables-0 activating (enabled)
08:55:05 Server: TestDropBox inactive (enabled)
08:55:05
08:55:05 Log dir: /home/omero/workspace/OMERO-test-integration/src/dist/var/log exists
08:55:05 Log files: Blitz-0.log 129.8 KB errors=0 warnings=3
08:55:05 Log files: DropBox.log 121 B
08:55:05 Log files: FileServer.log 114 B
08:55:05 Log files: Indexer-0.log 238 B
08:55:05 Log files: MonitorServer.log 117 B
08:55:05 Log files: PixelData-0.log 239 B
08:55:05 Log files: Processor-0.log 281 B
08:55:05 Log files: Tables-0.log 281 B
08:55:05 Log files: TestDropBox.log n/a
08:55:05 Log files: master.err 875 B
08:55:05 Log files: master.out 41.5 KB
08:55:05 Log files: Total size 0.17 MB
08:55:05
08:55:05
08:55:05 Environment:OMERO_HOME=(unset)
08:55:05 Environment:OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
08:55:05 Environment:OMERO_NODE=(unset)
08:55:05 Environment:OMERO_MASTER=(unset)
08:55:05 Environment:OMERO_USERDIR=(unset)
08:55:05 Environment:OMERO_TMPDIR=(unset)
08:55:05 Environment:PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:55:05 Environment:PYTHONPATH=(unset)
08:55:05 Environment:ICE_HOME=/opt/ice-3.6.5
08:55:05 Environment:LD_LIBRARY_PATH=(unset)
08:55:05 Environment:DYLD_LIBRARY_PATH=(unset)
08:55:05
08:55:05 OMERO SSL port:14064
08:55:05 OMERO TCP port:14063
08:55:05 OMERO data dir:'/home/omero/workspace/OMERO-test-integration/data' Exists? True Is writable? True
08:55:05 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 398362)
08:55:05
08:55:05 JVM settings: Blitz-${index} -Xmx9600m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
08:55:05 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
08:55:05 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
08:55:05 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
08:55:05
08:55:05 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 3 October 2024 4bd8376b0975590496f8da746fa90970cb068692
08:55:05 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 3 October 2024 4bd8376b0975590496f8da746fa90970cb068692
08:55:05 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 3 October 2024 4bd8376b0975590496f8da746fa90970cb068692
08:55:05 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 3 October 2024 3783ffc755fe0d9901d1323a953a8c6b035db620
08:55:05 Jar: lib/server/ome-common.jar OME Common Java 6.0.24-SNAPSHOT 3 October 2024 3783ffc755fe0d9901d1323a953a8c6b035db620
08:55:05 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 3 October 2024 3783ffc755fe0d9901d1323a953a8c6b035db620
08:55:05 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 3 October 2024 3783ffc755fe0d9901d1323a953a8c6b035db620
08:55:05 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 3 October 2024 3783ffc755fe0d9901d1323a953a8c6b035db620
08:55:05 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 3 October 2024 3783ffc755fe0d9901d1323a953a8c6b035db620
08:55:05 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT
08:55:05 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT
08:55:05 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT
08:55:05 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT
08:55:05 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT
08:55:05 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT
08:55:05 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT
08:55:05 + export OMERO_SESSION_DIR=/tmp/OMERO-test-integration/185
08:55:05 + OMERO_SESSION_DIR=/tmp/OMERO-test-integration/185
08:55:05 + export ICE_CONFIG=/home/omero/workspace/OMERO-test-integration/src/dist/etc/ice.config
08:55:05 + ICE_CONFIG=/home/omero/workspace/OMERO-test-integration/src/dist/etc/ice.config
08:55:05 + echo Running the integration tests with -Dtestng.useDefaultListeners=true
08:55:05 Running the integration tests with -Dtestng.useDefaultListeners=true
08:55:05 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroJava/build.xml -Dtestng.useDefaultListeners=true -Dtestreports.dir=target/reports/integration integration
08:55:05 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:55:06 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/build.xml
08:55:06 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
08:55:06
08:55:06 testng-init:
08:55:06 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:55:06 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
08:55:10 08:55:09,689 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
08:55:10 08:55:09,693 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - No custom configurators were discovered as a service.
08:55:10 08:55:09,693 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
08:55:10 08:55:09,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
08:55:10 08:55:09,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
08:55:10 08:55:09,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
08:55:10 08:55:09,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
08:55:10 08:55:09,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
08:55:10 08:55:09,700 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
08:55:10 08:55:09,700 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
08:55:10 08:55:09,701 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
08:55:10 08:55:09,702 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3434a4f0 - Resource [logback.xml] occurs multiple times on the classpath.
08:55:10 08:55:09,702 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3434a4f0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
08:55:10 08:55:09,702 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3434a4f0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
08:55:10 08:55:09,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
08:55:10 08:55:09,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
08:55:10 08:55:09,976 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
08:55:10 08:55:09,978 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@79afa369 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
08:55:10 08:55:09,978 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@79afa369 - Please move "immediateFlush" property into the enclosing appender.
08:55:10 08:55:10,038 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@79afa369 - Setting the "immediateFlush" property of the enclosing appender to true
08:55:10 08:55:10,039 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
08:55:10 08:55:10,039 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
08:55:10 08:55:10,039 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
08:55:10 08:55:10,039 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
08:55:10 08:55:10,039 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
08:55:10 08:55:10,039 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
08:55:10 08:55:10,041 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3b9ac754 - End of configuration.
08:55:10 08:55:10,043 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e002356 - Registering current configuration as safe fallback point
08:55:10 08:55:10,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 343 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
08:55:10
08:55:10 lifecycle.test-compile:
08:55:10 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_619114832.tmp
08:55:10 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
08:55:10 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
08:55:10 :: delivering :: omero#OmeroJava-test;working@db6de8e9ca4d :: 5.6.3-513-c2479c27a8-ice36-ice36 :: integration :: Thu Oct 03 08:55:06 UTC 2024
08:55:10 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
08:55:10 :: publishing :: omero#OmeroJava-test
08:55:10 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-c2479c27a8-ice36-ice36.jar
08:55:10 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-c2479c27a8-ice36-ice36.xml
08:55:10
08:55:10 integration:
08:55:10 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:55:10 08:55:10,596 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
08:55:10 08:55:10,599 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - No custom configurators were discovered as a service.
08:55:10 08:55:10,599 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
08:55:10 08:55:10,600 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
08:55:10 08:55:10,601 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
08:55:10 08:55:10,602 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
08:55:10 08:55:10,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
08:55:10 08:55:10,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
08:55:10 08:55:10,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
08:55:10 08:55:10,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
08:55:10 08:55:10,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
08:55:10 08:55:10,605 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@74fe5c40 - Resource [logback.xml] occurs multiple times on the classpath.
08:55:10 08:55:10,605 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@74fe5c40 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
08:55:10 08:55:10,605 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@74fe5c40 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
08:55:10 08:55:10,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
08:55:10 08:55:10,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
08:55:10 08:55:10,798 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
08:55:10 08:55:10,800 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3febb011 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
08:55:10 08:55:10,800 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3febb011 - Please move "immediateFlush" property into the enclosing appender.
08:55:10 08:55:10,824 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3febb011 - Setting the "immediateFlush" property of the enclosing appender to true
08:55:10 08:55:10,825 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
08:55:10 08:55:10,825 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
08:55:10 08:55:10,825 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
08:55:10 08:55:10,825 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
08:55:10 08:55:10,825 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
08:55:10 08:55:10,825 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
08:55:10 08:55:10,825 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@10e31a9a - End of configuration.
08:55:10 08:55:10,826 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@131774fe - Registering current configuration as safe fallback point
08:55:10 08:55:10,826 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 223 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
08:55:12 Oct 03, 2024 8:55:12 AM ome.system.OmeroContext prepareRefresh
08:55:12 INFO: Refreshing ome.system.OmeroContext@3f4b840d: startup date [Thu Oct 03 08:55:12 UTC 2024]; root of context hierarchy
08:55:12 Oct 03, 2024 8:55:12 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
08:55:12 INFO: Loading XML bean definitions from class path resource [ome/config.xml]
08:55:26 cb74231b-6a72-4372-8c45-179a1cfa8697
08:59:51 2024-10-03 08:59:51,267 ERROR [ ome.formats.importer.ImportLibrary] (sDataset-1) Cannot link to target
09:00:27 2024-10-03 09:00:27,805 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:00:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:00:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:00:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:00:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:00:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:00:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:00:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:00:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:00:27 at java.base/java.lang.Thread.run(Thread.java:829)
09:00:27 Caused by: Ice.CommunicatorDestroyedException: null
09:00:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:00:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:00:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:00:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:00:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:00:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:00:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:00:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:00:27 ... 7 common frames omitted
09:00:44 2024-10-03 09:00:44,647 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:00:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:00:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:00:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:00:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:00:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:00:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:00:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:00:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:00:44 at java.base/java.lang.Thread.run(Thread.java:829)
09:00:44 Caused by: Ice.CommunicatorDestroyedException: null
09:00:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:00:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:00:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:00:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:00:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:00:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:00:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:00:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:00:44 ... 7 common frames omitted
09:00:49 2024-10-03 09:00:49,168 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:00:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:00:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:00:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:00:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:00:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:00:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:00:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:00:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:00:49 at java.base/java.lang.Thread.run(Thread.java:829)
09:00:49 Caused by: Ice.CommunicatorDestroyedException: null
09:00:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:00:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:00:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:00:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:00:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:00:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:00:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:00:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:00:49 ... 7 common frames omitted
09:01:25 2024-10-03 09:01:25,542 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:01:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:01:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:01:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:01:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:01:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:01:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:01:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:01:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:01:25 at java.base/java.lang.Thread.run(Thread.java:829)
09:01:25 Caused by: Ice.CommunicatorDestroyedException: null
09:01:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:01:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:01:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:01:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:01:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:01:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:01:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:01:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:01:25 ... 7 common frames omitted
09:01:43 2024-10-03 09:01:43,980 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:01:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:01:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:01:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:01:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:01:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:01:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:01:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:01:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:01:43 at java.base/java.lang.Thread.run(Thread.java:829)
09:01:43 Caused by: Ice.CommunicatorDestroyedException: null
09:01:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:01:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:01:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:01:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:01:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:01:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:01:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:01:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:01:43 ... 7 common frames omitted
09:04:14 2024-10-03 09:04:14,004 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:04:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:14 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:14 Caused by: Ice.CommunicatorDestroyedException: null
09:04:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:14 ... 7 common frames omitted
09:04:14 2024-10-03 09:04:14,966 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:04:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:14 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:14 Caused by: Ice.CommunicatorDestroyedException: null
09:04:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:14 ... 7 common frames omitted
09:04:15 2024-10-03 09:04:15,995 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:04:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:15 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:15 Caused by: Ice.CommunicatorDestroyedException: null
09:04:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:15 ... 7 common frames omitted
09:04:19 2024-10-03 09:04:19,679 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:04:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:19 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:19 Caused by: Ice.CommunicatorDestroyedException: null
09:04:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:19 ... 7 common frames omitted
09:04:20 2024-10-03 09:04:20,496 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:04:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:20 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:20 Caused by: Ice.CommunicatorDestroyedException: null
09:04:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:20 ... 7 common frames omitted
09:04:21 2024-10-03 09:04:21,197 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:04:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:21 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:21 Caused by: Ice.CommunicatorDestroyedException: null
09:04:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:21 ... 7 common frames omitted
09:04:21 2024-10-03 09:04:21,943 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:04:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:21 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:21 Caused by: Ice.CommunicatorDestroyedException: null
09:04:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:21 ... 7 common frames omitted
09:04:22 2024-10-03 09:04:22,635 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:04:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:22 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:22 Caused by: Ice.CommunicatorDestroyedException: null
09:04:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:22 ... 7 common frames omitted
09:04:23 2024-10-03 09:04:23,267 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:04:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:23 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:23 Caused by: Ice.CommunicatorDestroyedException: null
09:04:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:23 ... 7 common frames omitted
09:04:23 2024-10-03 09:04:23,956 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:04:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:23 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:23 Caused by: Ice.CommunicatorDestroyedException: null
09:04:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:23 ... 7 common frames omitted
09:04:24 2024-10-03 09:04:24,616 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:04:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:24 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:24 Caused by: Ice.CommunicatorDestroyedException: null
09:04:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:24 ... 7 common frames omitted
09:04:25 2024-10-03 09:04:25,248 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:04:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:25 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:25 Caused by: Ice.CommunicatorDestroyedException: null
09:04:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:25 ... 7 common frames omitted
09:04:25 2024-10-03 09:04:25,941 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:04:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:25 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:25 Caused by: Ice.CommunicatorDestroyedException: null
09:04:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:25 ... 7 common frames omitted
09:04:26 2024-10-03 09:04:26,651 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:04:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:26 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:26 Caused by: Ice.CommunicatorDestroyedException: null
09:04:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:26 ... 7 common frames omitted
09:04:27 2024-10-03 09:04:27,204 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:04:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:27 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:27 Caused by: Ice.CommunicatorDestroyedException: null
09:04:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:27 ... 7 common frames omitted
09:04:27 2024-10-03 09:04:27,878 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:04:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:27 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:27 Caused by: Ice.CommunicatorDestroyedException: null
09:04:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:27 ... 7 common frames omitted
09:04:28 2024-10-03 09:04:28,535 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:04:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:28 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:28 Caused by: Ice.CommunicatorDestroyedException: null
09:04:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:28 ... 7 common frames omitted
09:04:29 2024-10-03 09:04:29,089 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:04:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:29 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:29 Caused by: Ice.CommunicatorDestroyedException: null
09:04:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:29 ... 7 common frames omitted
09:04:29 2024-10-03 09:04:29,690 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:04:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:29 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:29 Caused by: Ice.CommunicatorDestroyedException: null
09:04:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:29 ... 7 common frames omitted
09:04:30 2024-10-03 09:04:30,310 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:04:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:30 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:30 Caused by: Ice.CommunicatorDestroyedException: null
09:04:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:30 ... 7 common frames omitted
09:04:30 2024-10-03 09:04:30,871 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:04:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:30 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:30 Caused by: Ice.CommunicatorDestroyedException: null
09:04:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:30 ... 7 common frames omitted
09:04:31 2024-10-03 09:04:31,484 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:04:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:31 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:31 Caused by: Ice.CommunicatorDestroyedException: null
09:04:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:31 ... 7 common frames omitted
09:04:32 2024-10-03 09:04:32,109 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:04:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:32 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:32 Caused by: Ice.CommunicatorDestroyedException: null
09:04:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:32 ... 7 common frames omitted
09:04:32 2024-10-03 09:04:32,674 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:04:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:32 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:32 Caused by: Ice.CommunicatorDestroyedException: null
09:04:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:32 ... 7 common frames omitted
09:04:33 2024-10-03 09:04:33,285 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:04:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:33 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:33 Caused by: Ice.CommunicatorDestroyedException: null
09:04:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:33 ... 7 common frames omitted
09:04:33 2024-10-03 09:04:33,906 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:04:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:33 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:33 Caused by: Ice.CommunicatorDestroyedException: null
09:04:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:33 ... 7 common frames omitted
09:04:34 2024-10-03 09:04:34,458 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:04:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:34 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:34 Caused by: Ice.CommunicatorDestroyedException: null
09:04:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:34 ... 7 common frames omitted
09:04:35 2024-10-03 09:04:35,060 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:04:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:35 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:35 Caused by: Ice.CommunicatorDestroyedException: null
09:04:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:35 ... 7 common frames omitted
09:04:35 2024-10-03 09:04:35,888 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:04:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:35 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:35 Caused by: Ice.CommunicatorDestroyedException: null
09:04:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:35 ... 7 common frames omitted
09:04:36 2024-10-03 09:04:36,646 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:04:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:36 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:36 Caused by: Ice.CommunicatorDestroyedException: null
09:04:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:36 ... 7 common frames omitted
09:04:37 2024-10-03 09:04:37,430 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:04:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:37 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:37 Caused by: Ice.CommunicatorDestroyedException: null
09:04:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:37 ... 7 common frames omitted
09:04:38 2024-10-03 09:04:38,258 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:04:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:38 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:38 Caused by: Ice.CommunicatorDestroyedException: null
09:04:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:38 ... 7 common frames omitted
09:04:38 2024-10-03 09:04:38,923 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:04:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:38 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:38 Caused by: Ice.CommunicatorDestroyedException: null
09:04:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:38 ... 7 common frames omitted
09:04:39 2024-10-03 09:04:39,643 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:04:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:39 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:39 Caused by: Ice.CommunicatorDestroyedException: null
09:04:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:39 ... 7 common frames omitted
09:04:40 2024-10-03 09:04:40,378 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:04:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:40 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:40 Caused by: Ice.CommunicatorDestroyedException: null
09:04:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:40 ... 7 common frames omitted
09:04:41 2024-10-03 09:04:41,043 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:04:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:41 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:41 Caused by: Ice.CommunicatorDestroyedException: null
09:04:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:41 ... 7 common frames omitted
09:04:41 2024-10-03 09:04:41,763 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:04:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:41 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:41 Caused by: Ice.CommunicatorDestroyedException: null
09:04:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:41 ... 7 common frames omitted
09:04:42 2024-10-03 09:04:42,496 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:04:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:42 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:42 Caused by: Ice.CommunicatorDestroyedException: null
09:04:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:42 ... 7 common frames omitted
09:04:43 2024-10-03 09:04:43,149 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:04:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:43 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:43 Caused by: Ice.CommunicatorDestroyedException: null
09:04:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:43 ... 7 common frames omitted
09:04:46 2024-10-03 09:04:46,312 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:04:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:46 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:46 Caused by: Ice.CommunicatorDestroyedException: null
09:04:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:46 ... 7 common frames omitted
09:04:46 2024-10-03 09:04:46,997 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:04:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:46 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:46 Caused by: Ice.CommunicatorDestroyedException: null
09:04:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:46 ... 7 common frames omitted
09:04:48 2024-10-03 09:04:48,512 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:04:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:48 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:48 Caused by: Ice.CommunicatorDestroyedException: null
09:04:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:48 ... 7 common frames omitted
09:04:49 2024-10-03 09:04:49,546 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:04:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:49 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:49 Caused by: Ice.CommunicatorDestroyedException: null
09:04:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:49 ... 7 common frames omitted
09:04:50 2024-10-03 09:04:50,187 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:04:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:50 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:50 Caused by: Ice.CommunicatorDestroyedException: null
09:04:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:50 ... 7 common frames omitted
09:04:51 2024-10-03 09:04:51,253 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:04:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:51 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:51 Caused by: Ice.CommunicatorDestroyedException: null
09:04:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:51 ... 7 common frames omitted
09:04:51 2024-10-03 09:04:51,675 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:04:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:51 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:51 Caused by: Ice.CommunicatorDestroyedException: null
09:04:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:51 ... 7 common frames omitted
09:04:53 2024-10-03 09:04:53,047 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:04:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:53 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:53 Caused by: Ice.CommunicatorDestroyedException: null
09:04:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:53 ... 7 common frames omitted
09:04:54 2024-10-03 09:04:54,204 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:04:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:54 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:54 Caused by: Ice.CommunicatorDestroyedException: null
09:04:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:54 ... 7 common frames omitted
09:04:56 2024-10-03 09:04:56,184 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:04:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:56 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:56 Caused by: Ice.CommunicatorDestroyedException: null
09:04:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:56 ... 7 common frames omitted
09:04:57 2024-10-03 09:04:57,359 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:04:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:57 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:57 Caused by: Ice.CommunicatorDestroyedException: null
09:04:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:57 ... 7 common frames omitted
09:04:58 2024-10-03 09:04:58,616 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:04:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:04:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:04:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:04:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:04:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:04:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:04:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:04:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:04:58 at java.base/java.lang.Thread.run(Thread.java:829)
09:04:58 Caused by: Ice.CommunicatorDestroyedException: null
09:04:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:04:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:04:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:04:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:04:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:04:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:04:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:04:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:04:58 ... 7 common frames omitted
09:05:01 2024-10-03 09:05:01,668 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:05:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:05:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:05:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:05:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:05:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:05:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:05:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:05:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:05:01 at java.base/java.lang.Thread.run(Thread.java:829)
09:05:01 Caused by: Ice.CommunicatorDestroyedException: null
09:05:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:05:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:05:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:05:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:05:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:05:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:05:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:05:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:05:01 ... 7 common frames omitted
09:05:05 2024-10-03 09:05:05,553 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:05:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:05:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:05:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:05:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:05:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:05:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:05:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:05:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:05:05 at java.base/java.lang.Thread.run(Thread.java:829)
09:05:05 Caused by: Ice.CommunicatorDestroyedException: null
09:05:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:05:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:05:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:05:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:05:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:05:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:05:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:05:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:05:05 ... 7 common frames omitted
09:05:06 2024-10-03 09:05:06,344 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:05:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:05:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:05:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:05:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:05:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:05:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:05:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:05:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:05:06 at java.base/java.lang.Thread.run(Thread.java:829)
09:05:06 Caused by: Ice.CommunicatorDestroyedException: null
09:05:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:05:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:05:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:05:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:05:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:05:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:05:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:05:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:05:06 ... 7 common frames omitted
09:05:07 2024-10-03 09:05:07,091 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:05:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:05:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:05:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:05:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:05:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:05:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:05:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:05:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:05:07 at java.base/java.lang.Thread.run(Thread.java:829)
09:05:07 Caused by: Ice.CommunicatorDestroyedException: null
09:05:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:05:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:05:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:05:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:05:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:05:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:05:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:05:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:05:07 ... 7 common frames omitted
09:05:07 2024-10-03 09:05:07,987 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:05:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:05:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:05:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:05:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:05:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:05:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:05:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:05:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:05:07 at java.base/java.lang.Thread.run(Thread.java:829)
09:05:07 Caused by: Ice.CommunicatorDestroyedException: null
09:05:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:05:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:05:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:05:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:05:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:05:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:05:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:05:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:05:07 ... 7 common frames omitted
09:06:29 2024-10-03 09:06:29,449 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:06:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:06:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:06:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:06:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:06:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:06:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:06:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:06:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:06:29 at java.base/java.lang.Thread.run(Thread.java:829)
09:06:29 Caused by: Ice.CommunicatorDestroyedException: null
09:06:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:06:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:06:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:06:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:06:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:06:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:06:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:06:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:06:29 ... 7 common frames omitted
09:06:31 2024-10-03 09:06:31,011 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:06:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:06:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:06:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:06:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:06:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:06:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:06:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:06:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:06:31 at java.base/java.lang.Thread.run(Thread.java:829)
09:06:31 Caused by: Ice.CommunicatorDestroyedException: null
09:06:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:06:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:06:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:06:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:06:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:06:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:06:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:06:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:06:31 ... 7 common frames omitted
09:06:32 2024-10-03 09:06:32,649 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:06:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:06:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:06:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:06:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:06:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:06:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:06:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:06:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:06:32 at java.base/java.lang.Thread.run(Thread.java:829)
09:06:32 Caused by: Ice.CommunicatorDestroyedException: null
09:06:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:06:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:06:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:06:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:06:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:06:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:06:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:06:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:06:32 ... 7 common frames omitted
09:06:34 2024-10-03 09:06:34,111 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:06:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:06:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:06:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:06:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:06:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:06:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:06:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:06:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:06:34 at java.base/java.lang.Thread.run(Thread.java:829)
09:06:34 Caused by: Ice.CommunicatorDestroyedException: null
09:06:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:06:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:06:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:06:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:06:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:06:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:06:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:06:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:06:34 ... 7 common frames omitted
09:06:35 2024-10-03 09:06:35,868 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:06:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:06:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:06:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:06:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:06:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:06:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:06:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:06:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:06:35 at java.base/java.lang.Thread.run(Thread.java:829)
09:06:35 Caused by: Ice.CommunicatorDestroyedException: null
09:06:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:06:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:06:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:06:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:06:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:06:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:06:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:06:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:06:35 ... 7 common frames omitted
09:06:37 2024-10-03 09:06:37,058 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:06:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:06:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:06:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:06:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:06:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:06:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:06:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:06:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:06:37 at java.base/java.lang.Thread.run(Thread.java:829)
09:06:37 Caused by: Ice.CommunicatorDestroyedException: null
09:06:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:06:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:06:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:06:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:06:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:06:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:06:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:06:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:06:37 ... 7 common frames omitted
09:06:38 2024-10-03 09:06:38,372 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:06:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:06:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:06:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:06:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:06:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:06:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:06:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:06:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:06:38 at java.base/java.lang.Thread.run(Thread.java:829)
09:06:38 Caused by: Ice.CommunicatorDestroyedException: null
09:06:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:06:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:06:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:06:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:06:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:06:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:06:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:06:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:06:38 ... 7 common frames omitted
09:06:39 2024-10-03 09:06:39,722 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:06:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:06:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:06:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:06:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:06:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:06:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:06:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:06:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:06:39 at java.base/java.lang.Thread.run(Thread.java:829)
09:06:39 Caused by: Ice.CommunicatorDestroyedException: null
09:06:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:06:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:06:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:06:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:06:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:06:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:06:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:06:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:06:39 ... 7 common frames omitted
09:09:36 2024-10-03 09:09:36,396 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:09:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:09:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:09:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:09:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:09:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:09:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:09:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:09:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:09:36 at java.base/java.lang.Thread.run(Thread.java:829)
09:09:36 Caused by: Ice.CommunicatorDestroyedException: null
09:09:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:09:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:09:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:09:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:09:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:09:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:09:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:09:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:09:36 ... 7 common frames omitted
09:09:37 2024-10-03 09:09:37,191 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:09:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:09:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:09:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:09:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:09:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:09:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:09:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:09:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:09:37 at java.base/java.lang.Thread.run(Thread.java:829)
09:09:37 Caused by: Ice.CommunicatorDestroyedException: null
09:09:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:09:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:09:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:09:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:09:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:09:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:09:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:09:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:09:37 ... 7 common frames omitted
09:09:38 2024-10-03 09:09:38,593 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:09:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:09:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:09:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:09:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:09:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:09:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:09:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:09:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:09:38 at java.base/java.lang.Thread.run(Thread.java:829)
09:09:38 Caused by: Ice.CommunicatorDestroyedException: null
09:09:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:09:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:09:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:09:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:09:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:09:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:09:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:09:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:09:38 ... 7 common frames omitted
09:09:39 2024-10-03 09:09:39,826 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:09:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:09:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:09:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:09:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:09:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:09:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:09:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:09:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:09:39 at java.base/java.lang.Thread.run(Thread.java:829)
09:09:39 Caused by: Ice.CommunicatorDestroyedException: null
09:09:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:09:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:09:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:09:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:09:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:09:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:09:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:09:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:09:39 ... 7 common frames omitted
09:09:40 2024-10-03 09:09:40,147 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:09:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:09:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:09:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:09:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:09:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:09:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:09:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:09:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:09:40 at java.base/java.lang.Thread.run(Thread.java:829)
09:09:40 Caused by: Ice.CommunicatorDestroyedException: null
09:09:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:09:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:09:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:09:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:09:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:09:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:09:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:09:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:09:40 ... 7 common frames omitted
09:09:41 2024-10-03 09:09:41,447 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:09:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:09:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:09:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:09:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:09:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:09:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:09:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:09:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:09:41 at java.base/java.lang.Thread.run(Thread.java:829)
09:09:41 Caused by: Ice.CommunicatorDestroyedException: null
09:09:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:09:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:09:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:09:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:09:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:09:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:09:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:09:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:09:41 ... 7 common frames omitted
09:09:42 2024-10-03 09:09:42,899 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:09:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:09:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:09:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:09:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:09:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:09:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:09:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:09:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:09:42 at java.base/java.lang.Thread.run(Thread.java:829)
09:09:42 Caused by: Ice.CommunicatorDestroyedException: null
09:09:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:09:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:09:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:09:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:09:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:09:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:09:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:09:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:09:42 ... 7 common frames omitted
09:09:44 2024-10-03 09:09:44,416 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:09:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:09:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:09:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:09:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:09:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:09:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:09:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:09:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:09:44 at java.base/java.lang.Thread.run(Thread.java:829)
09:09:44 Caused by: Ice.CommunicatorDestroyedException: null
09:09:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:09:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:09:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:09:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:09:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:09:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:09:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:09:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:09:44 ... 7 common frames omitted
09:09:46 2024-10-03 09:09:46,260 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:09:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:09:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:09:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:09:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:09:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:09:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:09:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:09:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:09:46 at java.base/java.lang.Thread.run(Thread.java:829)
09:09:46 Caused by: Ice.CommunicatorDestroyedException: null
09:09:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:09:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:09:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:09:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:09:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:09:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:09:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:09:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:09:46 ... 7 common frames omitted
09:09:47 2024-10-03 09:09:47,446 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:09:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:09:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:09:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:09:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:09:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:09:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:09:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:09:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:09:47 at java.base/java.lang.Thread.run(Thread.java:829)
09:09:47 Caused by: Ice.CommunicatorDestroyedException: null
09:09:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:09:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:09:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:09:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:09:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:09:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:09:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:09:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:09:47 ... 7 common frames omitted
09:09:48 2024-10-03 09:09:48,900 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:09:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:09:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:09:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:09:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:09:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:09:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:09:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:09:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:09:48 at java.base/java.lang.Thread.run(Thread.java:829)
09:09:48 Caused by: Ice.CommunicatorDestroyedException: null
09:09:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:09:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:09:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:09:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:09:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:09:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:09:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:09:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:09:48 ... 7 common frames omitted
09:09:50 2024-10-03 09:09:50,214 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:09:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:09:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:09:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:09:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:09:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:09:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:09:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:09:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:09:50 at java.base/java.lang.Thread.run(Thread.java:829)
09:09:50 Caused by: Ice.CommunicatorDestroyedException: null
09:09:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:09:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:09:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:09:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:09:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:09:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:09:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:09:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:09:50 ... 7 common frames omitted
09:10:26 2024-10-03 09:10:26,890 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:10:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:26 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:26 Caused by: Ice.CommunicatorDestroyedException: null
09:10:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:26 ... 7 common frames omitted
09:10:28 2024-10-03 09:10:28,602 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:10:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:28 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:28 Caused by: Ice.CommunicatorDestroyedException: null
09:10:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:28 ... 7 common frames omitted
09:10:30 2024-10-03 09:10:30,295 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:10:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:30 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:30 Caused by: Ice.CommunicatorDestroyedException: null
09:10:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:30 ... 7 common frames omitted
09:10:31 2024-10-03 09:10:31,985 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:10:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:31 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:31 Caused by: Ice.CommunicatorDestroyedException: null
09:10:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:31 ... 7 common frames omitted
09:10:33 2024-10-03 09:10:33,874 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:10:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:33 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:33 Caused by: Ice.CommunicatorDestroyedException: null
09:10:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:33 ... 7 common frames omitted
09:10:36 2024-10-03 09:10:36,931 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:10:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:36 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:36 Caused by: Ice.CommunicatorDestroyedException: null
09:10:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:36 ... 7 common frames omitted
09:10:39 2024-10-03 09:10:39,641 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:10:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:39 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:39 Caused by: Ice.CommunicatorDestroyedException: null
09:10:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:39 ... 7 common frames omitted
09:10:42 2024-10-03 09:10:42,341 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:10:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:42 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:42 Caused by: Ice.CommunicatorDestroyedException: null
09:10:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:42 ... 7 common frames omitted
09:10:45 2024-10-03 09:10:45,094 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:10:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:45 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:45 Caused by: Ice.CommunicatorDestroyedException: null
09:10:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:45 ... 7 common frames omitted
09:10:47 2024-10-03 09:10:47,529 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:10:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:47 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:47 Caused by: Ice.CommunicatorDestroyedException: null
09:10:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:47 ... 7 common frames omitted
09:10:49 2024-10-03 09:10:49,564 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:10:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:49 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:49 Caused by: Ice.CommunicatorDestroyedException: null
09:10:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:49 ... 7 common frames omitted
09:10:51 2024-10-03 09:10:51,513 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:10:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:51 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:51 Caused by: Ice.CommunicatorDestroyedException: null
09:10:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:51 ... 7 common frames omitted
09:10:53 2024-10-03 09:10:53,484 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:10:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:53 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:53 Caused by: Ice.CommunicatorDestroyedException: null
09:10:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:53 ... 7 common frames omitted
09:10:55 2024-10-03 09:10:55,458 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:10:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:55 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:55 Caused by: Ice.CommunicatorDestroyedException: null
09:10:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:55 ... 7 common frames omitted
09:10:57 2024-10-03 09:10:57,682 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:10:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:57 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:57 Caused by: Ice.CommunicatorDestroyedException: null
09:10:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:57 ... 7 common frames omitted
09:10:59 2024-10-03 09:10:59,741 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:10:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:10:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:10:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:10:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:10:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:10:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:10:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:10:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:10:59 at java.base/java.lang.Thread.run(Thread.java:829)
09:10:59 Caused by: Ice.CommunicatorDestroyedException: null
09:10:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:10:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:10:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:10:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:10:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:10:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:10:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:10:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:10:59 ... 7 common frames omitted
09:11:02 2024-10-03 09:11:02,180 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:11:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:02 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:02 Caused by: Ice.CommunicatorDestroyedException: null
09:11:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:02 ... 7 common frames omitted
09:11:04 2024-10-03 09:11:04,244 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:11:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:04 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:04 Caused by: Ice.CommunicatorDestroyedException: null
09:11:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:04 ... 7 common frames omitted
09:11:06 2024-10-03 09:11:06,258 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:11:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:06 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:06 Caused by: Ice.CommunicatorDestroyedException: null
09:11:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:06 ... 7 common frames omitted
09:11:08 2024-10-03 09:11:08,243 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:11:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:08 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:08 Caused by: Ice.CommunicatorDestroyedException: null
09:11:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:08 ... 7 common frames omitted
09:11:10 2024-10-03 09:11:10,234 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:11:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:10 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:10 Caused by: Ice.CommunicatorDestroyedException: null
09:11:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:10 ... 7 common frames omitted
09:11:13 2024-10-03 09:11:13,237 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:11:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:13 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:13 Caused by: Ice.CommunicatorDestroyedException: null
09:11:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:13 ... 7 common frames omitted
09:11:16 2024-10-03 09:11:16,285 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:11:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:16 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:16 Caused by: Ice.CommunicatorDestroyedException: null
09:11:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:16 ... 7 common frames omitted
09:11:19 2024-10-03 09:11:19,343 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:11:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:19 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:19 Caused by: Ice.CommunicatorDestroyedException: null
09:11:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:19 ... 7 common frames omitted
09:11:22 2024-10-03 09:11:22,419 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:11:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:22 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:22 Caused by: Ice.CommunicatorDestroyedException: null
09:11:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:22 ... 7 common frames omitted
09:11:24 2024-10-03 09:11:24,379 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:11:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:24 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:24 Caused by: Ice.CommunicatorDestroyedException: null
09:11:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:24 ... 7 common frames omitted
09:11:26 2024-10-03 09:11:26,335 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:11:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:26 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:26 Caused by: Ice.CommunicatorDestroyedException: null
09:11:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:26 ... 7 common frames omitted
09:11:28 2024-10-03 09:11:28,517 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:11:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:28 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:28 Caused by: Ice.CommunicatorDestroyedException: null
09:11:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:28 ... 7 common frames omitted
09:11:30 2024-10-03 09:11:30,446 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:11:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:30 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:30 Caused by: Ice.CommunicatorDestroyedException: null
09:11:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:30 ... 7 common frames omitted
09:11:32 2024-10-03 09:11:32,555 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:11:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:32 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:32 Caused by: Ice.CommunicatorDestroyedException: null
09:11:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:32 ... 7 common frames omitted
09:11:34 2024-10-03 09:11:34,523 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:11:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:34 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:34 Caused by: Ice.CommunicatorDestroyedException: null
09:11:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:34 ... 7 common frames omitted
09:11:36 2024-10-03 09:11:36,550 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:11:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:36 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:36 Caused by: Ice.CommunicatorDestroyedException: null
09:11:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:36 ... 7 common frames omitted
09:11:38 2024-10-03 09:11:38,537 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:11:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:38 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:38 Caused by: Ice.CommunicatorDestroyedException: null
09:11:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:38 ... 7 common frames omitted
09:11:40 2024-10-03 09:11:40,661 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:11:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:40 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:40 Caused by: Ice.CommunicatorDestroyedException: null
09:11:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:40 ... 7 common frames omitted
09:11:42 2024-10-03 09:11:42,791 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:11:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:42 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:42 Caused by: Ice.CommunicatorDestroyedException: null
09:11:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:42 ... 7 common frames omitted
09:11:44 2024-10-03 09:11:44,819 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:11:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:44 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:44 Caused by: Ice.CommunicatorDestroyedException: null
09:11:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:44 ... 7 common frames omitted
09:11:46 2024-10-03 09:11:46,830 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:11:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:46 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:46 Caused by: Ice.CommunicatorDestroyedException: null
09:11:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:46 ... 7 common frames omitted
09:11:50 2024-10-03 09:11:50,167 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:11:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:50 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:50 Caused by: Ice.CommunicatorDestroyedException: null
09:11:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:50 ... 7 common frames omitted
09:11:53 2024-10-03 09:11:53,350 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:11:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:53 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:53 Caused by: Ice.CommunicatorDestroyedException: null
09:11:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:53 ... 7 common frames omitted
09:11:56 2024-10-03 09:11:56,520 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:11:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:56 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:56 Caused by: Ice.CommunicatorDestroyedException: null
09:11:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:56 ... 7 common frames omitted
09:11:59 2024-10-03 09:11:59,677 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:11:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:11:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:11:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:11:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:11:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:11:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:11:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:11:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:11:59 at java.base/java.lang.Thread.run(Thread.java:829)
09:11:59 Caused by: Ice.CommunicatorDestroyedException: null
09:11:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:11:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:11:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:11:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:11:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:11:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:11:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:11:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:11:59 ... 7 common frames omitted
09:12:01 2024-10-03 09:12:01,754 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:12:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:01 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:01 Caused by: Ice.CommunicatorDestroyedException: null
09:12:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:01 ... 7 common frames omitted
09:12:03 2024-10-03 09:12:03,794 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:12:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:03 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:03 Caused by: Ice.CommunicatorDestroyedException: null
09:12:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:03 ... 7 common frames omitted
09:12:05 2024-10-03 09:12:05,751 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:12:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:05 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:05 Caused by: Ice.CommunicatorDestroyedException: null
09:12:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:05 ... 7 common frames omitted
09:12:08 2024-10-03 09:12:08,094 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:12:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:08 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:08 Caused by: Ice.CommunicatorDestroyedException: null
09:12:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:08 ... 7 common frames omitted
09:12:10 2024-10-03 09:12:10,227 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:12:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:10 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:10 Caused by: Ice.CommunicatorDestroyedException: null
09:12:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:10 ... 7 common frames omitted
09:12:12 2024-10-03 09:12:12,310 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:12:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:12 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:12 Caused by: Ice.CommunicatorDestroyedException: null
09:12:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:12 ... 7 common frames omitted
09:12:14 2024-10-03 09:12:14,341 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:12:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:14 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:14 Caused by: Ice.CommunicatorDestroyedException: null
09:12:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:14 ... 7 common frames omitted
09:12:38 2024-10-03 09:12:38,708 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:12:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:38 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:38 Caused by: Ice.CommunicatorDestroyedException: null
09:12:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:38 ... 7 common frames omitted
09:12:41 2024-10-03 09:12:41,957 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:12:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:41 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:41 Caused by: Ice.CommunicatorDestroyedException: null
09:12:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:41 ... 7 common frames omitted
09:12:44 2024-10-03 09:12:44,975 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:12:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:44 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:44 Caused by: Ice.CommunicatorDestroyedException: null
09:12:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:44 ... 7 common frames omitted
09:12:48 2024-10-03 09:12:48,016 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:12:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:48 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:48 Caused by: Ice.CommunicatorDestroyedException: null
09:12:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:48 ... 7 common frames omitted
09:12:51 2024-10-03 09:12:51,065 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:12:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:51 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:51 Caused by: Ice.CommunicatorDestroyedException: null
09:12:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:51 ... 7 common frames omitted
09:12:54 2024-10-03 09:12:54,573 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:12:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:54 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:54 Caused by: Ice.CommunicatorDestroyedException: null
09:12:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:54 ... 7 common frames omitted
09:12:57 2024-10-03 09:12:57,622 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:12:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:12:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:12:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:12:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:12:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:12:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:12:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:12:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:12:57 at java.base/java.lang.Thread.run(Thread.java:829)
09:12:57 Caused by: Ice.CommunicatorDestroyedException: null
09:12:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:12:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:12:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:12:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:12:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:12:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:12:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:12:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:12:57 ... 7 common frames omitted
09:13:00 2024-10-03 09:13:00,715 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:13:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:00 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:00 Caused by: Ice.CommunicatorDestroyedException: null
09:13:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:00 ... 7 common frames omitted
09:13:03 2024-10-03 09:13:03,877 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:13:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:03 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:03 Caused by: Ice.CommunicatorDestroyedException: null
09:13:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:03 ... 7 common frames omitted
09:13:06 2024-10-03 09:13:06,043 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:13:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:06 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:06 Caused by: Ice.CommunicatorDestroyedException: null
09:13:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:06 ... 7 common frames omitted
09:13:07 2024-10-03 09:13:07,924 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:13:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:07 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:07 Caused by: Ice.CommunicatorDestroyedException: null
09:13:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:07 ... 7 common frames omitted
09:13:09 2024-10-03 09:13:09,742 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:13:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:09 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:09 Caused by: Ice.CommunicatorDestroyedException: null
09:13:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:09 ... 7 common frames omitted
09:13:12 2024-10-03 09:13:12,570 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:13:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:12 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:12 Caused by: Ice.CommunicatorDestroyedException: null
09:13:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:12 ... 7 common frames omitted
09:13:14 2024-10-03 09:13:14,802 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:13:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:14 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:14 Caused by: Ice.CommunicatorDestroyedException: null
09:13:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:14 ... 7 common frames omitted
09:13:17 2024-10-03 09:13:17,148 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:13:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:17 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:17 Caused by: Ice.CommunicatorDestroyedException: null
09:13:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:17 ... 7 common frames omitted
09:13:19 2024-10-03 09:13:19,324 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:13:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:19 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:19 Caused by: Ice.CommunicatorDestroyedException: null
09:13:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:19 ... 7 common frames omitted
09:13:21 2024-10-03 09:13:21,766 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:13:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:21 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:21 Caused by: Ice.CommunicatorDestroyedException: null
09:13:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:21 ... 7 common frames omitted
09:13:25 2024-10-03 09:13:25,379 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:13:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:25 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:25 Caused by: Ice.CommunicatorDestroyedException: null
09:13:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:25 ... 7 common frames omitted
09:13:28 2024-10-03 09:13:28,956 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:13:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:28 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:28 Caused by: Ice.CommunicatorDestroyedException: null
09:13:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:28 ... 7 common frames omitted
09:13:32 2024-10-03 09:13:32,451 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:13:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:32 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:32 Caused by: Ice.CommunicatorDestroyedException: null
09:13:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:32 ... 7 common frames omitted
09:13:36 2024-10-03 09:13:36,054 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:13:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:36 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:36 Caused by: Ice.CommunicatorDestroyedException: null
09:13:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:36 ... 7 common frames omitted
09:13:39 2024-10-03 09:13:39,800 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:13:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:39 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:39 Caused by: Ice.CommunicatorDestroyedException: null
09:13:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:39 ... 7 common frames omitted
09:13:43 2024-10-03 09:13:43,606 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:13:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:43 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:43 Caused by: Ice.CommunicatorDestroyedException: null
09:13:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:43 ... 7 common frames omitted
09:13:47 2024-10-03 09:13:47,373 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:13:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:13:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:13:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:13:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:13:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:13:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:13:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:13:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:13:47 at java.base/java.lang.Thread.run(Thread.java:829)
09:13:47 Caused by: Ice.CommunicatorDestroyedException: null
09:13:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:13:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:13:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:13:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:13:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:13:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:13:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:13:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:13:47 ... 7 common frames omitted
09:14:56 2024-10-03 09:14:56,802 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:14:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:14:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:14:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:14:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:14:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:14:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:14:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:14:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:14:56 at java.base/java.lang.Thread.run(Thread.java:829)
09:14:56 Caused by: Ice.CommunicatorDestroyedException: null
09:14:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:14:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:14:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:14:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:14:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:14:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:14:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:14:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:14:56 ... 7 common frames omitted
09:14:59 2024-10-03 09:14:59,395 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:14:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:14:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:14:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:14:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:14:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:14:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:14:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:14:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:14:59 at java.base/java.lang.Thread.run(Thread.java:829)
09:14:59 Caused by: Ice.CommunicatorDestroyedException: null
09:14:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:14:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:14:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:14:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:14:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:14:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:14:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:14:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:14:59 ... 7 common frames omitted
09:15:01 2024-10-03 09:15:01,956 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:15:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:01 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:01 Caused by: Ice.CommunicatorDestroyedException: null
09:15:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:01 ... 7 common frames omitted
09:15:04 2024-10-03 09:15:04,647 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:15:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:04 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:04 Caused by: Ice.CommunicatorDestroyedException: null
09:15:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:04 ... 7 common frames omitted
09:15:07 2024-10-03 09:15:07,324 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:15:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:07 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:07 Caused by: Ice.CommunicatorDestroyedException: null
09:15:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:07 ... 7 common frames omitted
09:15:11 2024-10-03 09:15:11,212 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:15:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:11 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:11 Caused by: Ice.CommunicatorDestroyedException: null
09:15:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:11 ... 7 common frames omitted
09:15:15 2024-10-03 09:15:15,101 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:15:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:15 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:15 Caused by: Ice.CommunicatorDestroyedException: null
09:15:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:15 ... 7 common frames omitted
09:15:18 2024-10-03 09:15:18,982 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:15:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:18 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:18 Caused by: Ice.CommunicatorDestroyedException: null
09:15:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:18 ... 7 common frames omitted
09:15:22 2024-10-03 09:15:22,887 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:15:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:22 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:22 Caused by: Ice.CommunicatorDestroyedException: null
09:15:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:22 ... 7 common frames omitted
09:15:26 2024-10-03 09:15:26,597 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:15:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:26 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:26 Caused by: Ice.CommunicatorDestroyedException: null
09:15:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:26 ... 7 common frames omitted
09:15:30 2024-10-03 09:15:30,306 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:15:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:30 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:30 Caused by: Ice.CommunicatorDestroyedException: null
09:15:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:30 ... 7 common frames omitted
09:15:34 2024-10-03 09:15:34,020 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:15:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:34 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:34 Caused by: Ice.CommunicatorDestroyedException: null
09:15:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:34 ... 7 common frames omitted
09:15:37 2024-10-03 09:15:37,770 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:15:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:37 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:37 Caused by: Ice.CommunicatorDestroyedException: null
09:15:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:37 ... 7 common frames omitted
09:15:42 2024-10-03 09:15:42,816 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:15:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:42 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:42 Caused by: Ice.CommunicatorDestroyedException: null
09:15:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:42 ... 7 common frames omitted
09:15:47 2024-10-03 09:15:47,674 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:15:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:47 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:47 Caused by: Ice.CommunicatorDestroyedException: null
09:15:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:47 ... 7 common frames omitted
09:15:52 2024-10-03 09:15:52,713 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:15:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:52 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:52 Caused by: Ice.CommunicatorDestroyedException: null
09:15:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:52 ... 7 common frames omitted
09:15:57 2024-10-03 09:15:57,572 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:15:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:57 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:57 Caused by: Ice.CommunicatorDestroyedException: null
09:15:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:57 ... 7 common frames omitted
09:15:58 2024-10-03 09:15:58,660 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:15:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:58 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:58 Caused by: Ice.CommunicatorDestroyedException: null
09:15:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:58 ... 7 common frames omitted
09:15:59 2024-10-03 09:15:59,764 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:15:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:15:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:15:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:15:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:15:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:15:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:15:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:15:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:15:59 at java.base/java.lang.Thread.run(Thread.java:829)
09:15:59 Caused by: Ice.CommunicatorDestroyedException: null
09:15:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:15:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:15:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:15:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:15:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:15:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:15:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:15:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:15:59 ... 7 common frames omitted
09:16:00 2024-10-03 09:16:00,870 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:16:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:00 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:00 Caused by: Ice.CommunicatorDestroyedException: null
09:16:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:00 ... 7 common frames omitted
09:16:01 2024-10-03 09:16:01,998 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:16:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:01 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:01 Caused by: Ice.CommunicatorDestroyedException: null
09:16:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:01 ... 7 common frames omitted
09:16:03 2024-10-03 09:16:03,089 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:16:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:03 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:03 Caused by: Ice.CommunicatorDestroyedException: null
09:16:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:03 ... 7 common frames omitted
09:16:04 2024-10-03 09:16:04,184 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:16:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:04 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:04 Caused by: Ice.CommunicatorDestroyedException: null
09:16:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:04 ... 7 common frames omitted
09:16:05 2024-10-03 09:16:05,291 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:16:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:05 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:05 Caused by: Ice.CommunicatorDestroyedException: null
09:16:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:05 ... 7 common frames omitted
09:16:06 2024-10-03 09:16:06,413 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:16:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:06 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:06 Caused by: Ice.CommunicatorDestroyedException: null
09:16:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:06 ... 7 common frames omitted
09:16:07 2024-10-03 09:16:07,448 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:16:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:07 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:07 Caused by: Ice.CommunicatorDestroyedException: null
09:16:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:07 ... 7 common frames omitted
09:16:08 2024-10-03 09:16:08,491 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:16:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:08 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:08 Caused by: Ice.CommunicatorDestroyedException: null
09:16:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:08 ... 7 common frames omitted
09:16:09 2024-10-03 09:16:09,573 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:16:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:09 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:09 Caused by: Ice.CommunicatorDestroyedException: null
09:16:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:09 ... 7 common frames omitted
09:16:10 2024-10-03 09:16:10,614 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:16:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:10 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:10 Caused by: Ice.CommunicatorDestroyedException: null
09:16:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:10 ... 7 common frames omitted
09:16:11 2024-10-03 09:16:11,654 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:16:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:11 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:11 Caused by: Ice.CommunicatorDestroyedException: null
09:16:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:11 ... 7 common frames omitted
09:16:12 2024-10-03 09:16:12,694 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:16:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:12 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:12 Caused by: Ice.CommunicatorDestroyedException: null
09:16:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:12 ... 7 common frames omitted
09:16:13 2024-10-03 09:16:13,753 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:16:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:13 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:13 Caused by: Ice.CommunicatorDestroyedException: null
09:16:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:13 ... 7 common frames omitted
09:16:14 2024-10-03 09:16:14,821 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:16:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:14 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:14 Caused by: Ice.CommunicatorDestroyedException: null
09:16:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:14 ... 7 common frames omitted
09:16:15 2024-10-03 09:16:15,899 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:16:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:15 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:15 Caused by: Ice.CommunicatorDestroyedException: null
09:16:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:15 ... 7 common frames omitted
09:16:16 2024-10-03 09:16:16,978 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:16:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:16 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:16 Caused by: Ice.CommunicatorDestroyedException: null
09:16:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:16 ... 7 common frames omitted
09:16:18 2024-10-03 09:16:18,079 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:16:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:18 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:18 Caused by: Ice.CommunicatorDestroyedException: null
09:16:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:18 ... 7 common frames omitted
09:16:19 2024-10-03 09:16:19,175 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:16:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:19 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:19 Caused by: Ice.CommunicatorDestroyedException: null
09:16:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:19 ... 7 common frames omitted
09:16:20 2024-10-03 09:16:20,302 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:16:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:20 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:20 Caused by: Ice.CommunicatorDestroyedException: null
09:16:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:20 ... 7 common frames omitted
09:16:21 2024-10-03 09:16:21,385 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:16:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:21 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:21 Caused by: Ice.CommunicatorDestroyedException: null
09:16:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:21 ... 7 common frames omitted
09:16:22 2024-10-03 09:16:22,546 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:16:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:22 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:22 Caused by: Ice.CommunicatorDestroyedException: null
09:16:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:22 ... 7 common frames omitted
09:16:23 2024-10-03 09:16:23,648 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:16:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:23 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:23 Caused by: Ice.CommunicatorDestroyedException: null
09:16:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:23 ... 7 common frames omitted
09:16:24 2024-10-03 09:16:24,726 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:16:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:24 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:24 Caused by: Ice.CommunicatorDestroyedException: null
09:16:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:24 ... 7 common frames omitted
09:16:25 2024-10-03 09:16:25,828 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:16:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:25 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:25 Caused by: Ice.CommunicatorDestroyedException: null
09:16:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:25 ... 7 common frames omitted
09:16:26 2024-10-03 09:16:26,944 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:16:26 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:26 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:26 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:26 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:26 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:26 Caused by: Ice.CommunicatorDestroyedException: null
09:16:26 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:26 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:26 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:26 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:26 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:26 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:26 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:26 ... 7 common frames omitted
09:16:28 2024-10-03 09:16:28,183 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:16:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:28 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:28 Caused by: Ice.CommunicatorDestroyedException: null
09:16:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:28 ... 7 common frames omitted
09:16:29 2024-10-03 09:16:29,296 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:16:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:29 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:29 Caused by: Ice.CommunicatorDestroyedException: null
09:16:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:29 ... 7 common frames omitted
09:16:30 2024-10-03 09:16:30,395 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:16:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:30 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:30 Caused by: Ice.CommunicatorDestroyedException: null
09:16:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:30 ... 7 common frames omitted
09:16:31 2024-10-03 09:16:31,478 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:16:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:31 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:31 Caused by: Ice.CommunicatorDestroyedException: null
09:16:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:31 ... 7 common frames omitted
09:16:32 2024-10-03 09:16:32,569 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:16:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:32 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:32 Caused by: Ice.CommunicatorDestroyedException: null
09:16:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:32 ... 7 common frames omitted
09:16:34 2024-10-03 09:16:34,851 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:16:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:34 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:34 Caused by: Ice.CommunicatorDestroyedException: null
09:16:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:34 ... 7 common frames omitted
09:16:37 2024-10-03 09:16:37,112 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:16:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:37 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:37 Caused by: Ice.CommunicatorDestroyedException: null
09:16:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:37 ... 7 common frames omitted
09:16:39 2024-10-03 09:16:39,418 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:16:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:39 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:39 Caused by: Ice.CommunicatorDestroyedException: null
09:16:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:39 ... 7 common frames omitted
09:16:41 2024-10-03 09:16:41,695 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:16:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:41 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:41 Caused by: Ice.CommunicatorDestroyedException: null
09:16:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:41 ... 7 common frames omitted
09:16:45 2024-10-03 09:16:45,925 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:16:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:45 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:45 Caused by: Ice.CommunicatorDestroyedException: null
09:16:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:45 ... 7 common frames omitted
09:16:49 2024-10-03 09:16:49,612 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:16:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:49 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:49 Caused by: Ice.CommunicatorDestroyedException: null
09:16:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:49 ... 7 common frames omitted
09:16:53 2024-10-03 09:16:53,283 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:16:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:16:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:16:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:16:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:16:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:16:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:16:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:16:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:16:53 at java.base/java.lang.Thread.run(Thread.java:829)
09:16:53 Caused by: Ice.CommunicatorDestroyedException: null
09:16:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:16:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:16:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:16:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:16:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:16:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:16:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:16:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:16:53 ... 7 common frames omitted
09:17:06 2024-10-03 09:17:06,104 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:17:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:17:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:17:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:17:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:17:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:17:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:17:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:17:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:17:06 at java.base/java.lang.Thread.run(Thread.java:829)
09:17:06 Caused by: Ice.CommunicatorDestroyedException: null
09:17:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:17:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:17:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:17:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:17:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:17:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:17:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:17:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:17:06 ... 7 common frames omitted
09:17:08 2024-10-03 09:17:08,322 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:17:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:17:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:17:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:17:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:17:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:17:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:17:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:17:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:17:08 at java.base/java.lang.Thread.run(Thread.java:829)
09:17:08 Caused by: Ice.CommunicatorDestroyedException: null
09:17:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:17:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:17:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:17:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:17:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:17:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:17:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:17:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:17:08 ... 7 common frames omitted
09:17:10 2024-10-03 09:17:10,422 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:17:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:17:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:17:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:17:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:17:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:17:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:17:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:17:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:17:10 at java.base/java.lang.Thread.run(Thread.java:829)
09:17:10 Caused by: Ice.CommunicatorDestroyedException: null
09:17:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:17:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:17:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:17:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:17:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:17:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:17:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:17:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:17:10 ... 7 common frames omitted
09:17:12 2024-10-03 09:17:12,586 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:17:12 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:17:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:17:12 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:17:12 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:17:12 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:17:12 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:17:12 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:17:12 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:17:12 at java.base/java.lang.Thread.run(Thread.java:829)
09:17:12 Caused by: Ice.CommunicatorDestroyedException: null
09:17:12 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:17:12 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:17:12 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:17:12 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:17:12 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:17:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:17:12 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:17:12 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:17:12 ... 7 common frames omitted
09:20:50 2024-10-03 09:20:50,315 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:20:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:20:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:20:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:20:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:20:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:20:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:20:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:20:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:20:50 at java.base/java.lang.Thread.run(Thread.java:829)
09:20:50 Caused by: Ice.CommunicatorDestroyedException: null
09:20:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:20:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:20:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:20:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:20:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:20:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:20:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:20:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:20:50 ... 7 common frames omitted
09:20:51 2024-10-03 09:20:51,466 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:20:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:20:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:20:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:20:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:20:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:20:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:20:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:20:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:20:51 at java.base/java.lang.Thread.run(Thread.java:829)
09:20:51 Caused by: Ice.CommunicatorDestroyedException: null
09:20:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:20:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:20:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:20:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:20:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:20:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:20:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:20:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:20:51 ... 7 common frames omitted
09:20:52 2024-10-03 09:20:52,029 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:20:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:20:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:20:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:20:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:20:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:20:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:20:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:20:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:20:52 at java.base/java.lang.Thread.run(Thread.java:829)
09:20:52 Caused by: Ice.CommunicatorDestroyedException: null
09:20:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:20:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:20:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:20:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:20:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:20:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:20:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:20:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:20:52 ... 7 common frames omitted
09:20:52 2024-10-03 09:20:52,526 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:20:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:20:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:20:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:20:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:20:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:20:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:20:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:20:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:20:52 at java.base/java.lang.Thread.run(Thread.java:829)
09:20:52 Caused by: Ice.CommunicatorDestroyedException: null
09:20:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:20:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:20:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:20:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:20:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:20:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:20:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:20:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:20:52 ... 7 common frames omitted
09:20:53 2024-10-03 09:20:53,001 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:20:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:20:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:20:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:20:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:20:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:20:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:20:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:20:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:20:53 at java.base/java.lang.Thread.run(Thread.java:829)
09:20:53 Caused by: Ice.CommunicatorDestroyedException: null
09:20:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:20:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:20:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:20:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:20:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:20:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:20:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:20:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:20:53 ... 7 common frames omitted
09:20:54 2024-10-03 09:20:54,237 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:20:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:20:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:20:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:20:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:20:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:20:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:20:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:20:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:20:54 at java.base/java.lang.Thread.run(Thread.java:829)
09:20:54 Caused by: Ice.CommunicatorDestroyedException: null
09:20:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:20:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:20:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:20:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:20:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:20:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:20:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:20:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:20:54 ... 7 common frames omitted
09:20:54 2024-10-03 09:20:54,803 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:20:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:20:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:20:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:20:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:20:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:20:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:20:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:20:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:20:54 at java.base/java.lang.Thread.run(Thread.java:829)
09:20:54 Caused by: Ice.CommunicatorDestroyedException: null
09:20:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:20:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:20:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:20:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:20:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:20:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:20:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:20:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:20:54 ... 7 common frames omitted
09:20:56 2024-10-03 09:20:56,044 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:20:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:20:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:20:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:20:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:20:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:20:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:20:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:20:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:20:56 at java.base/java.lang.Thread.run(Thread.java:829)
09:20:56 Caused by: Ice.CommunicatorDestroyedException: null
09:20:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:20:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:20:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:20:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:20:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:20:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:20:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:20:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:20:56 ... 7 common frames omitted
09:20:56 2024-10-03 09:20:56,462 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:20:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:20:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:20:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:20:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:20:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:20:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:20:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:20:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:20:56 at java.base/java.lang.Thread.run(Thread.java:829)
09:20:56 Caused by: Ice.CommunicatorDestroyedException: null
09:20:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:20:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:20:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:20:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:20:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:20:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:20:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:20:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:20:56 ... 7 common frames omitted
09:20:56 2024-10-03 09:20:56,945 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:20:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:20:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:20:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:20:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:20:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:20:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:20:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:20:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:20:56 at java.base/java.lang.Thread.run(Thread.java:829)
09:20:56 Caused by: Ice.CommunicatorDestroyedException: null
09:20:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:20:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:20:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:20:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:20:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:20:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:20:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:20:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:20:56 ... 7 common frames omitted
09:20:57 2024-10-03 09:20:57,418 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:20:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:20:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:20:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:20:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:20:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:20:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:20:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:20:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:20:57 at java.base/java.lang.Thread.run(Thread.java:829)
09:20:57 Caused by: Ice.CommunicatorDestroyedException: null
09:20:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:20:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:20:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:20:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:20:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:20:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:20:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:20:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:20:57 ... 7 common frames omitted
09:20:59 2024-10-03 09:20:59,545 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:20:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:20:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:20:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:20:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:20:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:20:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:20:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:20:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:20:59 at java.base/java.lang.Thread.run(Thread.java:829)
09:20:59 Caused by: Ice.CommunicatorDestroyedException: null
09:20:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:20:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:20:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:20:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:20:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:20:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:20:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:20:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:20:59 ... 7 common frames omitted
09:23:22 2024-10-03 09:23:22,938 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:23:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:23:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:23:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:23:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:23:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:23:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:23:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:23:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:23:22 at java.base/java.lang.Thread.run(Thread.java:829)
09:23:22 Caused by: Ice.CommunicatorDestroyedException: null
09:23:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:23:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:23:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:23:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:23:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:23:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:23:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:23:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:23:22 ... 7 common frames omitted
09:23:27 2024-10-03 09:23:27,864 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:23:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:23:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:23:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:23:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:23:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:23:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:23:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:23:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:23:27 at java.base/java.lang.Thread.run(Thread.java:829)
09:23:27 Caused by: Ice.CommunicatorDestroyedException: null
09:23:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:23:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:23:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:23:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:23:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:23:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:23:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:23:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:23:27 ... 7 common frames omitted
09:23:35 2024-10-03 09:23:35,661 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:23:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:23:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:23:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:23:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:23:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:23:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:23:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:23:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:23:35 at java.base/java.lang.Thread.run(Thread.java:829)
09:23:35 Caused by: Ice.CommunicatorDestroyedException: null
09:23:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:23:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:23:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:23:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:23:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:23:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:23:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:23:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:23:35 ... 7 common frames omitted
09:23:53 2024-10-03 09:23:53,678 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:23:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:23:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:23:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:23:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:23:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:23:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:23:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:23:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:23:53 at java.base/java.lang.Thread.run(Thread.java:829)
09:23:53 Caused by: Ice.CommunicatorDestroyedException: null
09:23:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:23:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:23:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:23:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:23:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:23:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:23:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:23:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:23:53 ... 7 common frames omitted
09:23:55 2024-10-03 09:23:55,521 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:23:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:23:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:23:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:23:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:23:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:23:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:23:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:23:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:23:55 at java.base/java.lang.Thread.run(Thread.java:829)
09:23:55 Caused by: Ice.CommunicatorDestroyedException: null
09:23:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:23:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:23:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:23:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:23:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:23:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:23:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:23:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:23:55 ... 7 common frames omitted
09:23:57 2024-10-03 09:23:57,234 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:23:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:23:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:23:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:23:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:23:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:23:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:23:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:23:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:23:57 at java.base/java.lang.Thread.run(Thread.java:829)
09:23:57 Caused by: Ice.CommunicatorDestroyedException: null
09:23:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:23:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:23:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:23:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:23:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:23:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:23:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:23:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:23:57 ... 7 common frames omitted
09:23:59 2024-10-03 09:23:59,034 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:23:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:23:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:23:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:23:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:23:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:23:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:23:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:23:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:23:59 at java.base/java.lang.Thread.run(Thread.java:829)
09:23:59 Caused by: Ice.CommunicatorDestroyedException: null
09:23:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:23:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:23:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:23:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:23:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:23:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:23:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:23:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:23:59 ... 7 common frames omitted
09:24:00 2024-10-03 09:24:00,827 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:24:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:24:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:24:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:24:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:24:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:24:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:24:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:24:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:24:00 at java.base/java.lang.Thread.run(Thread.java:829)
09:24:00 Caused by: Ice.CommunicatorDestroyedException: null
09:24:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:24:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:24:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:24:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:24:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:24:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:24:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:24:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:24:00 ... 7 common frames omitted
09:24:02 2024-10-03 09:24:02,727 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:24:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:24:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:24:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:24:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:24:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:24:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:24:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:24:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:24:02 at java.base/java.lang.Thread.run(Thread.java:829)
09:24:02 Caused by: Ice.CommunicatorDestroyedException: null
09:24:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:24:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:24:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:24:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:24:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:24:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:24:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:24:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:24:02 ... 7 common frames omitted
09:24:04 2024-10-03 09:24:04,522 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:24:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:24:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:24:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:24:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:24:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:24:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:24:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:24:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:24:04 at java.base/java.lang.Thread.run(Thread.java:829)
09:24:04 Caused by: Ice.CommunicatorDestroyedException: null
09:24:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:24:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:24:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:24:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:24:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:24:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:24:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:24:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:24:04 ... 7 common frames omitted
09:24:06 2024-10-03 09:24:06,398 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:24:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:24:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:24:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:24:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:24:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:24:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:24:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:24:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:24:06 at java.base/java.lang.Thread.run(Thread.java:829)
09:24:06 Caused by: Ice.CommunicatorDestroyedException: null
09:24:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:24:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:24:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:24:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:24:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:24:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:24:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:24:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:24:06 ... 7 common frames omitted
09:24:08 2024-10-03 09:24:08,014 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:24:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:24:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:24:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:24:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:24:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:24:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:24:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:24:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:24:08 at java.base/java.lang.Thread.run(Thread.java:829)
09:24:08 Caused by: Ice.CommunicatorDestroyedException: null
09:24:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:24:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:24:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:24:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:24:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:24:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:24:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:24:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:24:08 ... 7 common frames omitted
09:24:09 2024-10-03 09:24:09,708 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:24:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:24:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:24:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:24:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:24:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:24:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:24:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:24:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:24:09 at java.base/java.lang.Thread.run(Thread.java:829)
09:24:09 Caused by: Ice.CommunicatorDestroyedException: null
09:24:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:24:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:24:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:24:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:24:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:24:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:24:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:24:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:24:09 ... 7 common frames omitted
09:24:11 2024-10-03 09:24:11,334 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:24:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:24:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:24:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:24:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:24:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:24:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:24:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:24:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:24:11 at java.base/java.lang.Thread.run(Thread.java:829)
09:24:11 Caused by: Ice.CommunicatorDestroyedException: null
09:24:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:24:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:24:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:24:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:24:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:24:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:24:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:24:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:24:11 ... 7 common frames omitted
09:24:13 2024-10-03 09:24:13,048 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:24:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:24:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:24:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:24:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:24:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:24:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:24:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:24:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:24:13 at java.base/java.lang.Thread.run(Thread.java:829)
09:24:13 Caused by: Ice.CommunicatorDestroyedException: null
09:24:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:24:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:24:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:24:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:24:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:24:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:24:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:24:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:24:13 ... 7 common frames omitted
09:24:14 2024-10-03 09:24:14,182 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:24:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:24:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:24:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:24:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:24:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:24:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:24:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:24:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:24:14 at java.base/java.lang.Thread.run(Thread.java:829)
09:24:14 Caused by: Ice.CommunicatorDestroyedException: null
09:24:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:24:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:24:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:24:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:24:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:24:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:24:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:24:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:24:14 ... 7 common frames omitted
09:29:19 2024-10-03 09:29:19,706 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:29:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:29:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:29:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:29:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:29:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:29:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:29:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:29:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:29:19 at java.base/java.lang.Thread.run(Thread.java:829)
09:29:19 Caused by: Ice.CommunicatorDestroyedException: null
09:29:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:29:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:29:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:29:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:29:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:29:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:29:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:29:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:29:19 ... 7 common frames omitted
09:30:02 2024-10-03 09:30:02,058 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:30:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:30:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:30:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:30:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:30:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:30:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:30:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:30:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:30:02 at java.base/java.lang.Thread.run(Thread.java:829)
09:30:02 Caused by: Ice.CommunicatorDestroyedException: null
09:30:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:30:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:30:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:30:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:30:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:30:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:30:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:30:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:30:02 ... 7 common frames omitted
09:30:04 2024-10-03 09:30:04,270 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:30:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:30:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:30:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:30:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:30:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:30:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:30:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:30:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:30:04 at java.base/java.lang.Thread.run(Thread.java:829)
09:30:04 Caused by: Ice.CommunicatorDestroyedException: null
09:30:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:30:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:30:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:30:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:30:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:30:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:30:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:30:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:30:04 ... 7 common frames omitted
09:41:32 Could not login with command line arguments.Glacier2.PermissionDeniedException
09:41:32 reason = "Password check failed for '7bf28177-1214-4b71-8021-cf8d9a704da5': [id=3014]"
09:41:32 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
09:41:32 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
09:41:32 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
09:41:32 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
09:41:32 at java.base/java.lang.Class.newInstance(Class.java:584)
09:41:32 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
09:41:32 at IceInternal.BasicStream.access$300(BasicStream.java:14)
09:41:32 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
09:41:32 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
09:41:32 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
09:41:32 at Glacier2.RouterPrxHelper.end_createSession(RouterPrxHelper.java:178)
09:41:32 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:49)
09:41:32 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:41)
09:41:32 at omero.client.createSession(client.java:776)
09:41:32 at omero.client.createSession(client.java:719)
09:41:32 at omero.gateway.Gateway.createSession(Gateway.java:1045)
09:41:32 at omero.gateway.Gateway.connect(Gateway.java:297)
09:41:32 at integration.gateway.GatewayUsageTest.testLoginFallback(GatewayUsageTest.java:154)
09:41:32 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
09:41:32 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
09:41:32 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
09:41:32 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
09:41:32 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
09:41:32 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
09:41:32 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
09:41:32 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
09:41:32 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
09:41:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:41:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:41:32 at java.base/java.lang.Thread.run(Thread.java:829)
09:41:32 Could not login with command line arguments.Glacier2.PermissionDeniedException
09:41:32 reason = "Password check failed for '7bf28177-1214-4b71-8021-cf8d9a704da5': [id=3014]"
09:41:32 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
09:41:32 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
09:41:32 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
09:41:32 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
09:41:32 at java.base/java.lang.Class.newInstance(Class.java:584)
09:41:32 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
09:41:32 at IceInternal.BasicStream.access$300(BasicStream.java:14)
09:41:32 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
09:41:32 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
09:41:32 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
09:41:32 at Glacier2.RouterPrxHelper.end_createSession(RouterPrxHelper.java:178)
09:41:32 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:49)
09:41:32 at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:41)
09:41:32 at omero.client.createSession(client.java:776)
09:41:32 at omero.client.createSession(client.java:719)
09:41:32 at omero.gateway.Gateway.createSession(Gateway.java:1045)
09:41:32 at omero.gateway.Gateway.connect(Gateway.java:297)
09:41:32 at integration.gateway.GatewayUsageTest.testLoginFallback(GatewayUsageTest.java:154)
09:41:32 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
09:41:32 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
09:41:32 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
09:41:32 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
09:41:32 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
09:41:32 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
09:41:32 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
09:41:32 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
09:41:32 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
09:41:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:41:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:41:32 at java.base/java.lang.Thread.run(Thread.java:829)
09:41:32 Exception in thread "TestNG-method=testLoginFallback-1"
09:41:46 Support for FileAnnotationData is deprecated. Use OriginalFile instead.
09:41:47 Could not load table dataomero.IllegalArgumentException: start value can't be greater than stop value
09:41:47 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:320)
09:41:47 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:220)
09:41:47 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
09:41:47 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
09:41:47 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
09:41:47 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
09:41:47 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
09:41:47 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
09:41:47 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
09:41:47 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
09:41:47 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
09:41:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:41:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:41:47 at java.base/java.lang.Thread.run(Thread.java:829)
09:41:47 Could not load table dataomero.IllegalArgumentException: start value can't be greater than stop value
09:41:47 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:320)
09:41:47 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:220)
09:41:47 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
09:41:47 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
09:41:47 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
09:41:47 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
09:41:47 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
09:41:47 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
09:41:47 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
09:41:47 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
09:41:47 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
09:41:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:41:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:41:47 at java.base/java.lang.Thread.run(Thread.java:829)
09:41:47 Exception in thread "TestNG-method=testInvalidParams-1"
09:41:48 Could not load table dataomero.IllegalArgumentException: step value is greater than the specified range
09:41:48 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:324)
09:41:48 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:229)
09:41:48 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
09:41:48 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
09:41:48 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
09:41:48 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
09:41:48 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
09:41:48 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
09:41:48 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
09:41:48 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
09:41:48 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
09:41:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:41:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:41:48 at java.base/java.lang.Thread.run(Thread.java:829)
09:41:48 Could not load table dataomero.IllegalArgumentException: step value is greater than the specified range
09:41:48 at omero.gateway.facility.TablesFacility.query(TablesFacility.java:324)
09:41:48 at integration.gateway.TablesFacilityTest.testInvalidParams(TablesFacilityTest.java:229)
09:41:48 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
09:41:48 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
09:41:48 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
09:41:48 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
09:41:48 at org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:135)
09:41:48 at org.testng.internal.invokers.InvokeMethodRunnable.runOne(InvokeMethodRunnable.java:44)
09:41:48 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:72)
09:41:48 at org.testng.internal.invokers.InvokeMethodRunnable.call(InvokeMethodRunnable.java:10)
09:41:48 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
09:41:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:41:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:41:48 at java.base/java.lang.Thread.run(Thread.java:829)
09:41:48 Exception in thread "TestNG-method=testInvalidParams-1"
09:41:48 No concrete type specified for column 'column1', using Object.toString()
09:41:49 Request rows 1700 to 1783; columns [5, 4, 0, 1, 10, 9, 7, 2]
09:41:50 Request rows 1846 to 1929; columns [5, 1, 6, 9, 7, 2, 0, 3]
09:41:52 Request rows 1678 to 1681; columns [9, 10, 3, 7, 5]
09:41:53 Request rows 1317 to 1355; columns [7, 4, 8, 1]
09:41:54 Request rows 269 to 298; columns [3, 5, 7, 4, 10, 1]
09:42:45 2024-10-03 09:42:45,434 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:42:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:42:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:42:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:42:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:42:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:42:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:42:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:42:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:42:45 at java.base/java.lang.Thread.run(Thread.java:829)
09:42:45 Caused by: Ice.CommunicatorDestroyedException: null
09:42:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:42:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:42:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:42:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:42:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:42:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:42:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:42:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:42:45 ... 7 common frames omitted
09:44:03 2024-10-03 09:44:03,177 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:44:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:03 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:03 Caused by: Ice.CommunicatorDestroyedException: null
09:44:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:03 ... 7 common frames omitted
09:44:07 2024-10-03 09:44:07,238 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:44:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:07 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:07 Caused by: Ice.CommunicatorDestroyedException: null
09:44:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:07 ... 7 common frames omitted
09:44:11 2024-10-03 09:44:11,050 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:44:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:11 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:11 Caused by: Ice.CommunicatorDestroyedException: null
09:44:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:11 ... 7 common frames omitted
09:44:14 2024-10-03 09:44:14,778 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:44:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:14 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:14 Caused by: Ice.CommunicatorDestroyedException: null
09:44:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:14 ... 7 common frames omitted
09:44:17 2024-10-03 09:44:17,841 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:44:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:17 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:17 Caused by: Ice.CommunicatorDestroyedException: null
09:44:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:17 ... 7 common frames omitted
09:44:20 2024-10-03 09:44:20,972 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:44:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:20 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:20 Caused by: Ice.CommunicatorDestroyedException: null
09:44:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:20 ... 7 common frames omitted
09:44:24 2024-10-03 09:44:24,075 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:44:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:24 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:24 Caused by: Ice.CommunicatorDestroyedException: null
09:44:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:24 ... 7 common frames omitted
09:44:27 2024-10-03 09:44:27,155 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:44:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:27 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:27 Caused by: Ice.CommunicatorDestroyedException: null
09:44:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:27 ... 7 common frames omitted
09:44:30 2024-10-03 09:44:30,162 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:44:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:30 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:30 Caused by: Ice.CommunicatorDestroyedException: null
09:44:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:30 ... 7 common frames omitted
09:44:31 2024-10-03 09:44:31,818 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:44:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:31 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:31 Caused by: Ice.CommunicatorDestroyedException: null
09:44:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:31 ... 7 common frames omitted
09:44:33 2024-10-03 09:44:33,605 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:44:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:33 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:33 Caused by: Ice.CommunicatorDestroyedException: null
09:44:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:33 ... 7 common frames omitted
09:44:35 2024-10-03 09:44:35,164 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:44:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:35 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:35 Caused by: Ice.CommunicatorDestroyedException: null
09:44:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:35 ... 7 common frames omitted
09:44:37 2024-10-03 09:44:37,518 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:44:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:37 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:37 Caused by: Ice.CommunicatorDestroyedException: null
09:44:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:37 ... 7 common frames omitted
09:44:40 2024-10-03 09:44:40,296 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:44:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:40 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:40 Caused by: Ice.CommunicatorDestroyedException: null
09:44:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:40 ... 7 common frames omitted
09:44:43 2024-10-03 09:44:43,027 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:44:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:43 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:43 Caused by: Ice.CommunicatorDestroyedException: null
09:44:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:43 ... 7 common frames omitted
09:44:45 2024-10-03 09:44:45,746 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:44:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:45 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:45 Caused by: Ice.CommunicatorDestroyedException: null
09:44:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:45 ... 7 common frames omitted
09:44:47 2024-10-03 09:44:47,918 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:44:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:47 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:47 Caused by: Ice.CommunicatorDestroyedException: null
09:44:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:47 ... 7 common frames omitted
09:44:49 2024-10-03 09:44:49,985 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:44:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:49 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:49 Caused by: Ice.CommunicatorDestroyedException: null
09:44:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:49 ... 7 common frames omitted
09:44:52 2024-10-03 09:44:52,091 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:44:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:52 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:52 Caused by: Ice.CommunicatorDestroyedException: null
09:44:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:52 ... 7 common frames omitted
09:44:54 2024-10-03 09:44:54,256 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:44:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:54 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:54 Caused by: Ice.CommunicatorDestroyedException: null
09:44:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:54 ... 7 common frames omitted
09:44:56 2024-10-03 09:44:56,376 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:44:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:56 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:56 Caused by: Ice.CommunicatorDestroyedException: null
09:44:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:56 ... 7 common frames omitted
09:44:57 2024-10-03 09:44:57,740 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:44:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:57 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:57 Caused by: Ice.CommunicatorDestroyedException: null
09:44:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:57 ... 7 common frames omitted
09:44:59 2024-10-03 09:44:59,114 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:44:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:44:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:44:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:44:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:44:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:44:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:44:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:44:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:44:59 at java.base/java.lang.Thread.run(Thread.java:829)
09:44:59 Caused by: Ice.CommunicatorDestroyedException: null
09:44:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:44:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:44:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:44:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:44:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:44:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:44:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:44:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:44:59 ... 7 common frames omitted
09:45:00 2024-10-03 09:45:00,484 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:45:00 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:00 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:00 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:00 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:00 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:00 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:00 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:00 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:00 Caused by: Ice.CommunicatorDestroyedException: null
09:45:00 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:00 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:00 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:00 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:00 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:00 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:00 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:00 ... 7 common frames omitted
09:45:02 2024-10-03 09:45:02,497 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:45:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:02 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:02 Caused by: Ice.CommunicatorDestroyedException: null
09:45:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:02 ... 7 common frames omitted
09:45:06 2024-10-03 09:45:06,260 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:45:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:06 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:06 Caused by: Ice.CommunicatorDestroyedException: null
09:45:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:06 ... 7 common frames omitted
09:45:09 2024-10-03 09:45:09,876 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:45:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:09 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:09 Caused by: Ice.CommunicatorDestroyedException: null
09:45:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:09 ... 7 common frames omitted
09:45:13 2024-10-03 09:45:13,568 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:45:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:13 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:13 Caused by: Ice.CommunicatorDestroyedException: null
09:45:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:13 ... 7 common frames omitted
09:45:17 2024-10-03 09:45:17,666 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:45:17 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:17 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:17 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:17 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:17 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:17 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:17 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:17 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:17 Caused by: Ice.CommunicatorDestroyedException: null
09:45:17 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:17 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:17 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:17 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:17 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:17 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:17 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:17 ... 7 common frames omitted
09:45:19 2024-10-03 09:45:19,660 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:45:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:19 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:19 Caused by: Ice.CommunicatorDestroyedException: null
09:45:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:19 ... 7 common frames omitted
09:45:21 2024-10-03 09:45:21,135 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:45:21 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:21 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:21 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:21 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:21 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:21 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:21 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:21 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:21 Caused by: Ice.CommunicatorDestroyedException: null
09:45:21 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:21 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:21 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:21 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:21 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:21 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:21 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:21 ... 7 common frames omitted
09:45:24 2024-10-03 09:45:24,126 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:45:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:24 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:24 Caused by: Ice.CommunicatorDestroyedException: null
09:45:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:24 ... 7 common frames omitted
09:45:27 2024-10-03 09:45:27,125 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:45:27 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:27 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:27 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:27 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:27 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:27 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:27 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:27 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:27 Caused by: Ice.CommunicatorDestroyedException: null
09:45:27 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:27 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:27 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:27 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:27 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:27 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:27 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:27 ... 7 common frames omitted
09:45:30 2024-10-03 09:45:30,283 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:45:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:30 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:30 Caused by: Ice.CommunicatorDestroyedException: null
09:45:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:30 ... 7 common frames omitted
09:45:33 2024-10-03 09:45:33,302 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:45:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:33 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:33 Caused by: Ice.CommunicatorDestroyedException: null
09:45:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:33 ... 7 common frames omitted
09:45:34 2024-10-03 09:45:34,786 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:45:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:34 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:34 Caused by: Ice.CommunicatorDestroyedException: null
09:45:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:34 ... 7 common frames omitted
09:45:36 2024-10-03 09:45:36,364 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:45:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:36 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:36 Caused by: Ice.CommunicatorDestroyedException: null
09:45:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:36 ... 7 common frames omitted
09:45:37 2024-10-03 09:45:37,827 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:45:37 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:45:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:45:37 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:45:37 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:45:37 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:45:37 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:45:37 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:45:37 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:45:37 at java.base/java.lang.Thread.run(Thread.java:829)
09:45:37 Caused by: Ice.CommunicatorDestroyedException: null
09:45:37 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:45:37 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:45:37 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:45:37 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:45:37 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:45:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:45:37 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:45:37 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:45:37 ... 7 common frames omitted
09:46:11 2024-10-03 09:46:11,864 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:46:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:46:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:46:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:46:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:46:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:46:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:46:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:46:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:46:11 at java.base/java.lang.Thread.run(Thread.java:829)
09:46:11 Caused by: Ice.CommunicatorDestroyedException: null
09:46:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:46:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:46:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:46:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:46:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:46:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:46:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:46:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:46:11 ... 7 common frames omitted
09:46:16 2024-10-03 09:46:16,039 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:46:16 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:46:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:46:16 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:46:16 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:46:16 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:46:16 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:46:16 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:46:16 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:46:16 at java.base/java.lang.Thread.run(Thread.java:829)
09:46:16 Caused by: Ice.CommunicatorDestroyedException: null
09:46:16 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:46:16 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:46:16 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:46:16 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:46:16 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:46:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:46:16 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:46:16 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:46:16 ... 7 common frames omitted
09:46:20 2024-10-03 09:46:20,205 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:46:20 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:46:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:46:20 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:46:20 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:46:20 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:46:20 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:46:20 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:46:20 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:46:20 at java.base/java.lang.Thread.run(Thread.java:829)
09:46:20 Caused by: Ice.CommunicatorDestroyedException: null
09:46:20 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:46:20 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:46:20 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:46:20 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:46:20 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:46:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:46:20 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:46:20 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:46:20 ... 7 common frames omitted
09:46:34 2024-10-03 09:46:34,230 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:46:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:46:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:46:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:46:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:46:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:46:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:46:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:46:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:46:34 at java.base/java.lang.Thread.run(Thread.java:829)
09:46:34 Caused by: Ice.CommunicatorDestroyedException: null
09:46:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:46:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:46:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:46:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:46:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:46:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:46:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:46:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:46:34 ... 7 common frames omitted
09:47:13 2024-10-03 09:47:13,963 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:47:13 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:13 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:13 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:13 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:13 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:13 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:13 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:13 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:13 Caused by: Ice.CommunicatorDestroyedException: null
09:47:13 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:13 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:13 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:13 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:13 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:13 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:13 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:13 ... 7 common frames omitted
09:47:24 2024-10-03 09:47:24,435 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:47:24 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:24 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:24 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:24 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:24 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:24 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:24 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:24 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:24 Caused by: Ice.CommunicatorDestroyedException: null
09:47:24 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:24 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:24 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:24 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:24 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:24 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:24 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:24 ... 7 common frames omitted
09:47:25 2024-10-03 09:47:25,719 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:47:25 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:25 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:25 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:25 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:25 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:25 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:25 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:25 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:25 Caused by: Ice.CommunicatorDestroyedException: null
09:47:25 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:25 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:25 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:25 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:25 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:25 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:25 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:25 ... 7 common frames omitted
09:47:28 2024-10-03 09:47:28,225 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:47:28 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:28 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:28 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:28 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:28 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:28 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:28 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:28 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:28 Caused by: Ice.CommunicatorDestroyedException: null
09:47:28 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:28 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:28 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:28 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:28 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:28 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:28 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:28 ... 7 common frames omitted
09:47:29 2024-10-03 09:47:29,409 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:47:29 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:29 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:29 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:29 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:29 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:29 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:29 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:29 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:29 Caused by: Ice.CommunicatorDestroyedException: null
09:47:29 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:29 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:29 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:29 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:29 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:29 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:29 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:29 ... 7 common frames omitted
09:47:30 2024-10-03 09:47:30,650 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:47:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:30 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:30 Caused by: Ice.CommunicatorDestroyedException: null
09:47:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:30 ... 7 common frames omitted
09:47:32 2024-10-03 09:47:32,702 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:47:32 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:32 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:32 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:32 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:32 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:32 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:32 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:32 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:32 Caused by: Ice.CommunicatorDestroyedException: null
09:47:32 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:32 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:32 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:32 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:32 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:32 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:32 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:32 ... 7 common frames omitted
09:47:33 2024-10-03 09:47:33,960 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:47:33 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:33 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:33 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:33 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:33 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:33 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:33 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:33 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:33 Caused by: Ice.CommunicatorDestroyedException: null
09:47:33 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:33 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:33 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:33 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:33 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:33 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:33 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:33 ... 7 common frames omitted
09:47:35 2024-10-03 09:47:35,169 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:47:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:35 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:35 Caused by: Ice.CommunicatorDestroyedException: null
09:47:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:35 ... 7 common frames omitted
09:47:36 2024-10-03 09:47:36,389 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:47:36 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:36 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:36 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:36 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:36 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:36 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:36 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:36 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:36 Caused by: Ice.CommunicatorDestroyedException: null
09:47:36 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:36 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:36 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:36 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:36 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:36 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:36 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:36 ... 7 common frames omitted
09:47:38 2024-10-03 09:47:38,810 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:47:38 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:38 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:38 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:38 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:38 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:38 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:38 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:38 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:38 Caused by: Ice.CommunicatorDestroyedException: null
09:47:38 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:38 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:38 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:38 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:38 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:38 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:38 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:38 ... 7 common frames omitted
09:47:39 2024-10-03 09:47:39,563 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:47:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:39 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:39 Caused by: Ice.CommunicatorDestroyedException: null
09:47:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:39 ... 7 common frames omitted
09:47:40 2024-10-03 09:47:40,678 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:47:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:40 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:40 Caused by: Ice.CommunicatorDestroyedException: null
09:47:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:40 ... 7 common frames omitted
09:47:41 2024-10-03 09:47:41,469 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:47:41 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:41 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:41 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:41 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:41 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:41 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:41 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:41 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:41 Caused by: Ice.CommunicatorDestroyedException: null
09:47:41 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:41 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:41 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:41 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:41 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:41 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:41 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:41 ... 7 common frames omitted
09:47:42 2024-10-03 09:47:42,597 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:47:42 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:42 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:42 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:42 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:42 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:42 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:42 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:42 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:42 Caused by: Ice.CommunicatorDestroyedException: null
09:47:42 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:42 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:42 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:42 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:42 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:42 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:42 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:42 ... 7 common frames omitted
09:47:43 2024-10-03 09:47:43,355 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:47:43 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:43 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:43 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:43 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:43 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:43 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:43 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:43 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:43 Caused by: Ice.CommunicatorDestroyedException: null
09:47:43 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:43 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:43 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:43 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:43 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:43 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:43 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:43 ... 7 common frames omitted
09:47:44 2024-10-03 09:47:44,507 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:47:44 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:44 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:44 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:44 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:44 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:44 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:44 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:44 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:44 Caused by: Ice.CommunicatorDestroyedException: null
09:47:44 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:44 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:44 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:44 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:44 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:44 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:44 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:44 ... 7 common frames omitted
09:47:45 2024-10-03 09:47:45,279 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:47:45 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:45 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:45 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:45 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:45 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:45 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:45 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:45 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:45 Caused by: Ice.CommunicatorDestroyedException: null
09:47:45 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:45 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:45 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:45 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:45 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:45 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:45 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:45 ... 7 common frames omitted
09:47:46 2024-10-03 09:47:46,529 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:47:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:46 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:46 Caused by: Ice.CommunicatorDestroyedException: null
09:47:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:46 ... 7 common frames omitted
09:47:47 2024-10-03 09:47:47,293 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:47:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:47 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:47 Caused by: Ice.CommunicatorDestroyedException: null
09:47:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:47 ... 7 common frames omitted
09:47:48 2024-10-03 09:47:48,717 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:47:48 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:48 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:48 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:48 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:48 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:48 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:48 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:48 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:48 Caused by: Ice.CommunicatorDestroyedException: null
09:47:48 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:48 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:48 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:48 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:48 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:48 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:48 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:48 ... 7 common frames omitted
09:47:49 2024-10-03 09:47:49,479 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:47:49 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:49 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:49 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:49 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:49 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:49 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:49 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:49 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:49 Caused by: Ice.CommunicatorDestroyedException: null
09:47:49 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:49 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:49 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:49 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:49 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:49 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:49 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:49 ... 7 common frames omitted
09:47:50 2024-10-03 09:47:50,743 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:47:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:50 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:50 Caused by: Ice.CommunicatorDestroyedException: null
09:47:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:50 ... 7 common frames omitted
09:47:51 2024-10-03 09:47:51,495 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:47:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:51 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:51 Caused by: Ice.CommunicatorDestroyedException: null
09:47:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:51 ... 7 common frames omitted
09:47:52 2024-10-03 09:47:52,683 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:47:52 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:52 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:52 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:52 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:52 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:52 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:52 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:52 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:52 Caused by: Ice.CommunicatorDestroyedException: null
09:47:52 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:52 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:52 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:52 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:52 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:52 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:52 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:52 ... 7 common frames omitted
09:47:53 2024-10-03 09:47:53,443 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:47:53 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:53 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:53 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:53 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:53 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:53 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:53 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:53 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:53 Caused by: Ice.CommunicatorDestroyedException: null
09:47:53 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:53 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:53 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:53 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:53 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:53 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:53 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:53 ... 7 common frames omitted
09:47:54 2024-10-03 09:47:54,717 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:47:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:54 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:54 Caused by: Ice.CommunicatorDestroyedException: null
09:47:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:54 ... 7 common frames omitted
09:47:55 2024-10-03 09:47:55,535 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:47:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:55 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:55 Caused by: Ice.CommunicatorDestroyedException: null
09:47:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:55 ... 7 common frames omitted
09:47:56 2024-10-03 09:47:56,793 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:47:56 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:56 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:56 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:56 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:56 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:56 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:56 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:56 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:56 Caused by: Ice.CommunicatorDestroyedException: null
09:47:56 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:56 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:56 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:56 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:56 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:56 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:56 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:56 ... 7 common frames omitted
09:47:57 2024-10-03 09:47:57,636 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:47:57 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:57 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:57 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:57 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:57 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:57 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:57 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:57 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:57 Caused by: Ice.CommunicatorDestroyedException: null
09:47:57 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:57 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:57 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:57 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:57 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:57 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:57 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:57 ... 7 common frames omitted
09:47:58 2024-10-03 09:47:58,980 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:47:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:58 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:58 Caused by: Ice.CommunicatorDestroyedException: null
09:47:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:58 ... 7 common frames omitted
09:47:59 2024-10-03 09:47:59,755 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:47:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:47:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:47:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:47:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:47:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:47:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:47:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:47:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:47:59 at java.base/java.lang.Thread.run(Thread.java:829)
09:47:59 Caused by: Ice.CommunicatorDestroyedException: null
09:47:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:47:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:47:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:47:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:47:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:47:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:47:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:47:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:47:59 ... 7 common frames omitted
09:48:01 2024-10-03 09:48:01,188 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:48:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:01 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:01 Caused by: Ice.CommunicatorDestroyedException: null
09:48:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:01 ... 7 common frames omitted
09:48:01 2024-10-03 09:48:01,957 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:48:01 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:01 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:01 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:01 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:01 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:01 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:01 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:01 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:01 Caused by: Ice.CommunicatorDestroyedException: null
09:48:01 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:01 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:01 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:01 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:01 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:01 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:01 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:01 ... 7 common frames omitted
09:48:03 2024-10-03 09:48:03,398 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:48:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:03 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:03 Caused by: Ice.CommunicatorDestroyedException: null
09:48:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:03 ... 7 common frames omitted
09:48:04 2024-10-03 09:48:04,151 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:48:04 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:04 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:04 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:04 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:04 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:04 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:04 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:04 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:04 Caused by: Ice.CommunicatorDestroyedException: null
09:48:04 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:04 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:04 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:04 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:04 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:04 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:04 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:04 ... 7 common frames omitted
09:48:05 2024-10-03 09:48:05,620 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:48:05 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:05 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:05 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:05 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:05 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:05 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:05 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:05 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:05 Caused by: Ice.CommunicatorDestroyedException: null
09:48:05 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:05 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:05 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:05 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:05 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:05 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:05 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:05 ... 7 common frames omitted
09:48:06 2024-10-03 09:48:06,499 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:48:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:06 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:06 Caused by: Ice.CommunicatorDestroyedException: null
09:48:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:06 ... 7 common frames omitted
09:48:07 2024-10-03 09:48:07,789 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:48:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:07 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:07 Caused by: Ice.CommunicatorDestroyedException: null
09:48:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:07 ... 7 common frames omitted
09:48:08 2024-10-03 09:48:08,553 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:48:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:08 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:08 Caused by: Ice.CommunicatorDestroyedException: null
09:48:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:08 ... 7 common frames omitted
09:48:09 2024-10-03 09:48:09,844 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:48:09 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:09 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:09 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:09 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:09 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:09 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:09 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:09 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:09 Caused by: Ice.CommunicatorDestroyedException: null
09:48:09 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:09 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:09 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:09 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:09 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:09 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:09 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:09 ... 7 common frames omitted
09:48:10 2024-10-03 09:48:10,668 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:48:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:10 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:10 Caused by: Ice.CommunicatorDestroyedException: null
09:48:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:10 ... 7 common frames omitted
09:48:15 2024-10-03 09:48:15,094 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:48:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:15 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:15 Caused by: Ice.CommunicatorDestroyedException: null
09:48:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:15 ... 7 common frames omitted
09:48:15 2024-10-03 09:48:15,853 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:48:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:15 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:15 Caused by: Ice.CommunicatorDestroyedException: null
09:48:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:15 ... 7 common frames omitted
09:48:23 2024-10-03 09:48:23,232 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:48:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:23 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:23 Caused by: Ice.CommunicatorDestroyedException: null
09:48:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:23 ... 7 common frames omitted
09:48:23 2024-10-03 09:48:23,967 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:48:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:23 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:23 Caused by: Ice.CommunicatorDestroyedException: null
09:48:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:23 ... 7 common frames omitted
09:48:31 2024-10-03 09:48:31,167 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:48:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:31 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:31 Caused by: Ice.CommunicatorDestroyedException: null
09:48:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:31 ... 7 common frames omitted
09:48:31 2024-10-03 09:48:31,904 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:48:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:31 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:31 Caused by: Ice.CommunicatorDestroyedException: null
09:48:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:31 ... 7 common frames omitted
09:48:39 2024-10-03 09:48:39,165 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:48:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:39 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:39 Caused by: Ice.CommunicatorDestroyedException: null
09:48:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:39 ... 7 common frames omitted
09:48:39 2024-10-03 09:48:39,978 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:48:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:39 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:39 Caused by: Ice.CommunicatorDestroyedException: null
09:48:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:39 ... 7 common frames omitted
09:48:46 2024-10-03 09:48:46,185 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:48:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:46 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:46 Caused by: Ice.CommunicatorDestroyedException: null
09:48:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:46 ... 7 common frames omitted
09:48:46 2024-10-03 09:48:46,996 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:48:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:46 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:46 Caused by: Ice.CommunicatorDestroyedException: null
09:48:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:46 ... 7 common frames omitted
09:48:51 2024-10-03 09:48:51,197 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:48:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:51 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:51 Caused by: Ice.CommunicatorDestroyedException: null
09:48:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:51 ... 7 common frames omitted
09:48:51 2024-10-03 09:48:51,939 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:48:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:51 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:51 Caused by: Ice.CommunicatorDestroyedException: null
09:48:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:51 ... 7 common frames omitted
09:48:59 2024-10-03 09:48:59,120 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:48:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:59 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:59 Caused by: Ice.CommunicatorDestroyedException: null
09:48:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:59 ... 7 common frames omitted
09:48:59 2024-10-03 09:48:59,934 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:48:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:48:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:48:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:48:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:48:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:48:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:48:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:48:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:48:59 at java.base/java.lang.Thread.run(Thread.java:829)
09:48:59 Caused by: Ice.CommunicatorDestroyedException: null
09:48:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:48:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:48:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:48:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:48:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:48:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:48:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:48:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:48:59 ... 7 common frames omitted
09:49:07 2024-10-03 09:49:07,330 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:49:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:07 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:07 Caused by: Ice.CommunicatorDestroyedException: null
09:49:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:07 ... 7 common frames omitted
09:49:08 2024-10-03 09:49:08,080 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:49:08 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:08 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:08 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:08 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:08 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:08 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:08 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:08 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:08 Caused by: Ice.CommunicatorDestroyedException: null
09:49:08 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:08 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:08 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:08 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:08 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:08 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:08 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:08 ... 7 common frames omitted
09:49:14 2024-10-03 09:49:14,406 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:49:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:14 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:14 Caused by: Ice.CommunicatorDestroyedException: null
09:49:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:14 ... 7 common frames omitted
09:49:15 2024-10-03 09:49:15,156 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:49:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:15 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:15 Caused by: Ice.CommunicatorDestroyedException: null
09:49:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:15 ... 7 common frames omitted
09:49:18 2024-10-03 09:49:18,581 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:49:18 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:18 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:18 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:18 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:18 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:18 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:18 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:18 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:18 Caused by: Ice.CommunicatorDestroyedException: null
09:49:18 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:18 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:18 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:18 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:18 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:18 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:18 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:18 ... 7 common frames omitted
09:49:19 2024-10-03 09:49:19,359 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:49:19 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:19 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:19 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:19 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:19 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:19 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:19 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:19 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:19 Caused by: Ice.CommunicatorDestroyedException: null
09:49:19 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:19 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:19 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:19 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:19 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:19 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:19 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:19 ... 7 common frames omitted
09:49:22 2024-10-03 09:49:22,784 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:49:22 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:22 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:22 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:22 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:22 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:22 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:22 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:22 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:22 Caused by: Ice.CommunicatorDestroyedException: null
09:49:22 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:22 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:22 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:22 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:22 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:22 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:22 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:22 ... 7 common frames omitted
09:49:23 2024-10-03 09:49:23,572 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:49:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:23 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:23 Caused by: Ice.CommunicatorDestroyedException: null
09:49:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:23 ... 7 common frames omitted
09:49:31 2024-10-03 09:49:31,068 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:49:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:31 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:31 Caused by: Ice.CommunicatorDestroyedException: null
09:49:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:31 ... 7 common frames omitted
09:49:31 2024-10-03 09:49:31,846 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:49:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:31 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:31 Caused by: Ice.CommunicatorDestroyedException: null
09:49:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:31 ... 7 common frames omitted
09:49:39 2024-10-03 09:49:39,264 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:49:39 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:39 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:39 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:39 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:39 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:39 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:39 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:39 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:39 Caused by: Ice.CommunicatorDestroyedException: null
09:49:39 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:39 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:39 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:39 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:39 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:39 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:39 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:39 ... 7 common frames omitted
09:49:40 2024-10-03 09:49:40,008 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:49:40 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:40 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:40 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:40 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:40 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:40 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:40 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:40 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:40 Caused by: Ice.CommunicatorDestroyedException: null
09:49:40 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:40 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:40 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:40 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:40 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:40 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:40 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:40 ... 7 common frames omitted
09:49:46 2024-10-03 09:49:46,339 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:49:46 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:46 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:46 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:46 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:46 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:46 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:46 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:46 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:46 Caused by: Ice.CommunicatorDestroyedException: null
09:49:46 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:46 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:46 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:46 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:46 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:46 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:46 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:46 ... 7 common frames omitted
09:49:47 2024-10-03 09:49:47,124 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:49:47 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:47 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:47 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:47 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:47 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:47 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:47 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:47 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:47 Caused by: Ice.CommunicatorDestroyedException: null
09:49:47 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:47 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:47 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:47 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:47 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:47 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:47 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:47 ... 7 common frames omitted
09:49:50 2024-10-03 09:49:50,463 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:49:50 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:50 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:50 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:50 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:50 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:50 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:50 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:50 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:50 Caused by: Ice.CommunicatorDestroyedException: null
09:49:50 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:50 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:50 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:50 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:50 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:50 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:50 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:50 ... 7 common frames omitted
09:49:51 2024-10-03 09:49:51,272 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:49:51 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:51 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:51 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:51 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:51 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:51 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:51 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:51 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:51 Caused by: Ice.CommunicatorDestroyedException: null
09:49:51 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:51 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:51 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:51 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:51 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:51 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:51 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:51 ... 7 common frames omitted
09:49:54 2024-10-03 09:49:54,465 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:49:54 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:54 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:54 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:54 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:54 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:54 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:54 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:54 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:54 Caused by: Ice.CommunicatorDestroyedException: null
09:49:54 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:54 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:54 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:54 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:54 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:54 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:54 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:54 ... 7 common frames omitted
09:49:55 2024-10-03 09:49:55,221 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:49:55 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:55 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:55 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:55 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:55 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:55 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:55 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:55 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:55 Caused by: Ice.CommunicatorDestroyedException: null
09:49:55 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:55 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:55 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:55 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:55 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:55 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:55 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:55 ... 7 common frames omitted
09:49:58 2024-10-03 09:49:58,408 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:49:58 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:58 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:58 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:58 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:58 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:58 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:58 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:58 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:58 Caused by: Ice.CommunicatorDestroyedException: null
09:49:58 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:58 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:58 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:58 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:58 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:58 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:58 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:58 ... 7 common frames omitted
09:49:59 2024-10-03 09:49:59,233 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:49:59 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:49:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:49:59 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:49:59 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:49:59 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:49:59 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:49:59 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:49:59 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:49:59 at java.base/java.lang.Thread.run(Thread.java:829)
09:49:59 Caused by: Ice.CommunicatorDestroyedException: null
09:49:59 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:49:59 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:49:59 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:49:59 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:49:59 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:49:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:49:59 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:49:59 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:49:59 ... 7 common frames omitted
09:50:02 2024-10-03 09:50:02,517 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:50:02 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:02 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:02 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:02 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:02 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:02 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:02 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:02 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:02 Caused by: Ice.CommunicatorDestroyedException: null
09:50:02 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:02 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:02 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:02 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:02 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:02 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:02 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:02 ... 7 common frames omitted
09:50:03 2024-10-03 09:50:03,285 ERROR [ o.formats.importer.util.ClientKeepAlive] (7-thread-1) Exception while executing ping(), logging Connector out:
09:50:03 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:03 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:03 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:03 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:03 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:03 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:03 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:03 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:03 Caused by: Ice.CommunicatorDestroyedException: null
09:50:03 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:03 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:03 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:03 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:03 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:03 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:03 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:03 ... 7 common frames omitted
09:50:06 2024-10-03 09:50:06,686 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:50:06 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:06 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:06 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:06 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:06 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:06 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:06 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:06 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:06 Caused by: Ice.CommunicatorDestroyedException: null
09:50:06 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:06 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:06 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:06 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:06 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:06 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:06 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:06 ... 7 common frames omitted
09:50:07 2024-10-03 09:50:07,458 ERROR [ o.formats.importer.util.ClientKeepAlive] (0-thread-1) Exception while executing ping(), logging Connector out:
09:50:07 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:07 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:07 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:07 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:07 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:07 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:07 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:07 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:07 Caused by: Ice.CommunicatorDestroyedException: null
09:50:07 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:07 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:07 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:07 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:07 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:07 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:07 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:07 ... 7 common frames omitted
09:50:10 2024-10-03 09:50:10,761 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:50:10 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:10 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:10 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:10 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:10 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:10 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:10 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:10 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:10 Caused by: Ice.CommunicatorDestroyedException: null
09:50:10 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:10 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:10 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:10 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:10 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:10 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:10 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:10 ... 7 common frames omitted
09:50:11 2024-10-03 09:50:11,619 ERROR [ o.formats.importer.util.ClientKeepAlive] (3-thread-1) Exception while executing ping(), logging Connector out:
09:50:11 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:11 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:11 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:11 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:11 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:11 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:11 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:11 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:11 Caused by: Ice.CommunicatorDestroyedException: null
09:50:11 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:11 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:11 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:11 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:11 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:11 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:11 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:11 ... 7 common frames omitted
09:50:14 2024-10-03 09:50:14,968 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:50:14 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:14 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:14 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:14 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:14 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:14 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:14 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:14 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:14 Caused by: Ice.CommunicatorDestroyedException: null
09:50:14 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:14 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:14 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:14 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:14 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:14 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:14 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:14 ... 7 common frames omitted
09:50:15 2024-10-03 09:50:15,734 ERROR [ o.formats.importer.util.ClientKeepAlive] (6-thread-1) Exception while executing ping(), logging Connector out:
09:50:15 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:15 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:15 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:15 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:15 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:15 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:15 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:15 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:15 Caused by: Ice.CommunicatorDestroyedException: null
09:50:15 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:15 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:15 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:15 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:15 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:15 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:15 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:15 ... 7 common frames omitted
09:50:23 2024-10-03 09:50:23,148 ERROR [ o.formats.importer.util.ClientKeepAlive] (8-thread-1) Exception while executing ping(), logging Connector out:
09:50:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:23 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:23 Caused by: Ice.CommunicatorDestroyedException: null
09:50:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:23 ... 7 common frames omitted
09:50:23 2024-10-03 09:50:23,935 ERROR [ o.formats.importer.util.ClientKeepAlive] (9-thread-1) Exception while executing ping(), logging Connector out:
09:50:23 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:23 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:23 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:23 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:23 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:23 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:23 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:23 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:23 Caused by: Ice.CommunicatorDestroyedException: null
09:50:23 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:23 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:23 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:23 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:23 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:23 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:23 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:23 ... 7 common frames omitted
09:50:30 2024-10-03 09:50:30,278 ERROR [ o.formats.importer.util.ClientKeepAlive] (1-thread-1) Exception while executing ping(), logging Connector out:
09:50:30 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:30 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:30 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:30 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:30 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:30 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:30 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:30 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:30 Caused by: Ice.CommunicatorDestroyedException: null
09:50:30 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:30 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:30 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:30 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:30 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:30 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:30 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:30 ... 7 common frames omitted
09:50:31 2024-10-03 09:50:31,041 ERROR [ o.formats.importer.util.ClientKeepAlive] (2-thread-1) Exception while executing ping(), logging Connector out:
09:50:31 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:31 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:31 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:31 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:31 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:31 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:31 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:31 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:31 Caused by: Ice.CommunicatorDestroyedException: null
09:50:31 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:31 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:31 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:31 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:31 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:31 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:31 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:31 ... 7 common frames omitted
09:50:34 2024-10-03 09:50:34,570 ERROR [ o.formats.importer.util.ClientKeepAlive] (4-thread-1) Exception while executing ping(), logging Connector out:
09:50:34 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:34 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:34 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:34 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:34 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:34 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:34 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:34 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:34 Caused by: Ice.CommunicatorDestroyedException: null
09:50:34 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:34 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:34 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:34 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:34 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:34 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:34 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:34 ... 7 common frames omitted
09:50:35 2024-10-03 09:50:35,371 ERROR [ o.formats.importer.util.ClientKeepAlive] (5-thread-1) Exception while executing ping(), logging Connector out:
09:50:35 java.lang.RuntimeException: Ice.CommunicatorDestroyedException
09:50:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:845)
09:50:35 at ome.formats.importer.util.ClientKeepAlive.run(ClientKeepAlive.java:77)
09:50:35 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
09:50:35 at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
09:50:35 at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
09:50:35 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
09:50:35 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
09:50:35 at java.base/java.lang.Thread.run(Thread.java:829)
09:50:35 Caused by: Ice.CommunicatorDestroyedException: null
09:50:35 at IceInternal.Instance.proxyFactory(Instance.java:239)
09:50:35 at IceInternal.BasicStream.writeProxy(BasicStream.java:2142)
09:50:35 at omero.api.ServiceInterfacePrxHelper.__write(ServiceInterfacePrxHelper.java:114)
09:50:35 at omero.api.ServiceListHelper.write(ServiceListHelper.java:37)
09:50:35 at omero.api.ServiceFactoryPrxHelper.begin_keepAllAlive(ServiceFactoryPrxHelper.java:5946)
09:50:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5846)
09:50:35 at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:5833)
09:50:35 at ome.formats.OMEROMetadataStoreClient.ping(OMEROMetadataStoreClient.java:838)
09:50:35 ... 7 common frames omitted
09:50:38 ===============================================
09:50:38 OmeroJava.integration
09:50:38 Total tests run: 2589, Passes: 2589, Failures: 0, Skips: 0
09:50:38 ===============================================
09:50:40
09:50:40 BUILD SUCCESSFUL
09:50:40 Total time: 55 minutes 33 seconds
09:50:40 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroPy/build.xml integration -Dtestreports.dir=target/reports/integration
09:50:40 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
09:50:40 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/build.xml
09:50:40 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
09:50:40 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
09:50:40
09:50:40 python-integration:
09:50:40 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/integration
09:50:42 ============================= test session starts ==============================
09:50:42 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
09:50:42 cachedir: .pytest_cache
09:50:42 django: version: 4.2.16, settings: omeroweb.settings (from ini)
09:50:42 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
09:50:42 configfile: pytest.ini
09:50:42 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
09:50:46 collecting ... collected 2061 items / 36 deselected / 2025 selected
09:50:47 test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade0 PASSED [ 0%]
09:50:47 test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade1 PASSED [ 0%]
09:50:48 test/integration/clitest/test_admin.py::TestAdmin::test_log PASSED [ 0%]
09:50:51 test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_log PASSED [ 0%]
09:50:51 test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade0 PASSED [ 0%]
09:50:51 test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade1 PASSED [ 0%]
09:50:53 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Image] PASSED [ 0%]
09:50:53 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Dataset] PASSED [ 0%]
09:50:53 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Project] PASSED [ 0%]
09:50:53 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Plate] PASSED [ 0%]
09:50:53 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rw-----Screen] PASSED [ 0%]
09:50:53 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Image] PASSED [ 0%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Dataset] PASSED [ 0%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Project] PASSED [ 0%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Plate] PASSED [ 0%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwr----Screen] PASSED [ 0%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Image] PASSED [ 0%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Dataset] PASSED [ 0%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Project] PASSED [ 0%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Plate] PASSED [ 0%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwra---Screen] PASSED [ 1%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Image] PASSED [ 1%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Dataset] PASSED [ 1%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Project] PASSED [ 1%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Plate] PASSED [ 1%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[-rwrw---Screen] PASSED [ 1%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Image] PASSED [ 1%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Dataset] PASSED [ 1%]
09:50:54 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Project] PASSED [ 1%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Plate] PASSED [ 1%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rw-----Screen] PASSED [ 1%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwr----Image] PASSED [ 1%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwr----Dataset] PASSED [ 1%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwr----Project] PASSED [ 1%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwr----Plate] PASSED [ 1%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwr----Screen] PASSED [ 1%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwra---Image] PASSED [ 1%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwra---Dataset] PASSED [ 1%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwra---Project] PASSED [ 1%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwra---Plate] PASSED [ 1%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwra---Screen] PASSED [ 2%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwrw---Image] PASSED [ 2%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwrw---Dataset] PASSED [ 2%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwrw---Project] PASSED [ 2%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwrw---Plate] PASSED [ 2%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[Group:-rwrw---Screen] PASSED [ 2%]
09:50:55 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rw-----Image] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rw-----Dataset] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rw-----Project] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rw-----Plate] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rw-----Screen] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwr----Image] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwr----Dataset] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwr----Project] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwr----Plate] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwr----Screen] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwra---Image] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwra---Dataset] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwra---Project] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwra---Plate] PASSED [ 2%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwra---Screen] PASSED [ 3%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwrw---Image] PASSED [ 3%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwrw---Dataset] PASSED [ 3%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwrw---Project] PASSED [ 3%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwrw---Plate] PASSED [ 3%]
09:50:56 test/integration/clitest/test_chgrp.py::TestChgrp::testChgrpMyData[ExperimenterGroup:-rwrw---Screen] PASSED [ 3%]
09:50:57 test/integration/clitest/test_chgrp.py::TestChgrp::testNonMember PASSED [ 3%]
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09:55:23 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Image-] PASSED [ 12%]
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09:55:23 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Project-I] PASSED [ 12%]
09:55:23 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Plate-] PASSED [ 12%]
09:55:23 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Plate-I] PASSED [ 12%]
09:55:23 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Screen-] PASSED [ 12%]
09:55:23 test/integration/clitest/test_delete.py::TestDelete::testDeleteMyData[Screen-I] PASSED [ 12%]
09:55:27 test/integration/clitest/test_delete.py::TestDelete::testFileset[image-1] PASSED [ 12%]
09:55:30 test/integration/clitest/test_delete.py::TestDelete::testFileset[image-2] PASSED [ 12%]
09:55:33 test/integration/clitest/test_delete.py::TestDelete::testFileset[fileset-1] PASSED [ 12%]
09:55:37 test/integration/clitest/test_delete.py::TestDelete::testFileset[fileset-2] PASSED [ 12%]
09:55:40 test/integration/clitest/test_delete.py::TestDelete::testFilesetPartialFailing PASSED [ 12%]
09:55:44 test/integration/clitest/test_delete.py::TestDelete::testFilesetAllImagesDeleteDataset PASSED [ 12%]
09:55:44 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[True-1] PASSED [ 12%]
09:55:44 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[True-2] PASSED [ 12%]
09:55:44 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[True-3] PASSED [ 12%]
09:55:44 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[False-1] PASSED [ 12%]
09:55:44 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[False-2] PASSED [ 12%]
09:55:44 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsSameClass[False-3] PASSED [ 13%]
09:55:44 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[True-1] PASSED [ 13%]
09:55:44 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[True-2] PASSED [ 13%]
09:55:44 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[True-3] PASSED [ 13%]
09:55:44 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[False-1] PASSED [ 13%]
09:55:45 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[False-2] PASSED [ 13%]
09:55:45 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesSeparated[False-3] PASSED [ 13%]
09:55:45 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[True-1] PASSED [ 13%]
09:55:45 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[True-2] PASSED [ 13%]
09:55:45 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[True-3] PASSED [ 13%]
09:55:45 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[False-1] PASSED [ 13%]
09:55:45 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[False-2] PASSED [ 13%]
09:55:45 test/integration/clitest/test_delete.py::TestDelete::testMultipleSimpleObjectsTwoClassesInterlaced[False-3] PASSED [ 13%]
09:55:45 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[True-1-/Dataset] PASSED [ 13%]
09:55:46 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[True-1-] PASSED [ 13%]
09:55:46 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[True-2-/Dataset] PASSED [ 13%]
09:55:46 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[True-2-] PASSED [ 13%]
09:55:46 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[False-1-/Dataset] PASSED [ 13%]
09:55:46 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[False-1-] PASSED [ 13%]
09:55:46 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[False-2-/Dataset] PASSED [ 13%]
09:55:47 test/integration/clitest/test_delete.py::TestDelete::testBasicSkipheadBothForms[False-2-] PASSED [ 14%]
09:55:47 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[True-1] PASSED [ 14%]
09:55:47 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[True-2] PASSED [ 14%]
09:55:47 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[True-3] PASSED [ 14%]
09:55:47 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[False-1] PASSED [ 14%]
09:55:47 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[False-2] PASSED [ 14%]
09:55:48 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsSameClass[False-3] PASSED [ 14%]
09:55:48 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[True-1] PASSED [ 14%]
09:55:48 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[True-2] PASSED [ 14%]
09:55:49 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[True-3] PASSED [ 14%]
09:55:49 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[False-1] PASSED [ 14%]
09:55:49 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[False-2] PASSED [ 14%]
09:55:49 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsSeparated[False-3] PASSED [ 14%]
09:55:49 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[True-1] PASSED [ 14%]
09:55:50 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[True-2] PASSED [ 14%]
09:55:50 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[True-3] PASSED [ 14%]
09:55:50 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[False-1] PASSED [ 14%]
09:55:51 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[False-2] PASSED [ 14%]
09:55:51 test/integration/clitest/test_delete.py::TestDelete::testMultipleSkipheadsPlusObjectsInterlaced[False-3] PASSED [ 14%]
09:55:51 test/integration/clitest/test_delete.py::TestDelete::testDryRun PASSED [ 14%]
09:55:51 test/integration/clitest/test_delete.py::TestDelete::testExcludeNone PASSED [ 15%]
09:55:51 test/integration/clitest/test_delete.py::TestDelete::testExcludeDataset PASSED [ 15%]
09:55:51 test/integration/clitest/test_delete.py::TestDelete::testExcludeImage PASSED [ 15%]
09:55:51 test/integration/clitest/test_delete.py::TestDelete::testExcludeOverridesInclude PASSED [ 15%]
09:55:52 test/integration/clitest/test_delete.py::TestDelete::testDefaultExclusion PASSED [ 15%]
09:55:52 test/integration/clitest/test_delete.py::TestDelete::testDefaultExclusionOverride PASSED [ 15%]
09:55:52 test/integration/clitest/test_delete.py::TestDelete::testDefaultExclusionPartialOverride PASSED [ 15%]
09:55:52 test/integration/clitest/test_delete.py::TestDelete::testSeparateAnnotationDelete PASSED [ 15%]
09:55:52 test/integration/clitest/test_delete.py::TestDelete::testLinkedAnnotationDelete PASSED [ 15%]
09:55:53 test/integration/clitest/test_delete.py::TestDelete::testLinkedAnnotationDeleteWithOverride PASSED [ 15%]
09:55:53 test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[1] PASSED [ 15%]
09:55:53 test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[2] PASSED [ 15%]
09:55:53 test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[3] PASSED [ 15%]
09:55:53 test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionForce PASSED [ 15%]
09:55:55 test/integration/clitest/test_delete.py::TestDelete::testElisionDefaultFailForce PASSED [ 15%]
09:56:21 test/integration/clitest/test_delete.py::TestDelete::testOutputWithElision PASSED [ 15%]
09:56:23 test/integration/clitest/test_delete.py::TestTagDelete::testDeleteOneTagSetNotTags PASSED [ 15%]
09:56:23 test/integration/clitest/test_delete.py::TestTagDelete::testDeleteTwoTagSetsNotTags PASSED [ 15%]
09:56:23 test/integration/clitest/test_delete.py::TestTagDelete::testDeleteOneTagSetIncludingTags PASSED [ 15%]
09:56:24 test/integration/clitest/test_delete.py::TestTagDelete::testDeleteTwoTagSetsIncludingTags PASSED [ 15%]
09:56:25 test/integration/clitest/test_download.py::TestDownload::testNonExistingOriginalFile[] PASSED [ 16%]
09:56:25 test/integration/clitest/test_download.py::TestDownload::testNonExistingOriginalFile[OriginalFile:] PASSED [ 16%]
09:56:26 test/integration/clitest/test_download.py::TestDownload::testOriginalFileTmpfile[] FAILED [ 16%]
09:56:26 test/integration/clitest/test_download.py::TestDownload::testOriginalFileTmpfile[OriginalFile:] FAILED [ 16%]
09:56:26 test/integration/clitest/test_download.py::TestDownload::testOriginalFileStdout[] FAILED [ 16%]
09:56:26 test/integration/clitest/test_download.py::TestDownload::testOriginalFileStdout[OriginalFile:] FAILED [ 16%]
09:56:28 test/integration/clitest/test_download.py::TestDownload::testOriginalFileMultipleGroups[] FAILED [ 16%]
09:56:30 test/integration/clitest/test_download.py::TestDownload::testOriginalFileMultipleGroups[OriginalFile:] FAILED [ 16%]
09:56:30 test/integration/clitest/test_download.py::TestDownload::testNonExistingFileAnnotation PASSED [ 16%]
09:56:30 test/integration/clitest/test_download.py::TestDownload::testFileAnnotationTmpfile FAILED [ 16%]
09:56:30 test/integration/clitest/test_download.py::TestDownload::testFileAnnotationStdout FAILED [ 16%]
09:56:32 test/integration/clitest/test_download.py::TestDownload::testFileAnnotationMultipleGroups FAILED [ 16%]
09:56:35 test/integration/clitest/test_download.py::TestDownload::testNonExistingImage PASSED [ 16%]
09:56:39 test/integration/clitest/test_download.py::TestDownload::testImageFileset[True] FAILED [ 16%]
09:56:42 test/integration/clitest/test_download.py::TestDownload::testImageFileset[False] FAILED [ 16%]
09:56:45 test/integration/clitest/test_download.py::TestDownload::testSingleImageWithCompanion FAILED [ 16%]
09:56:48 test/integration/clitest/test_download.py::TestDownload::testMIF FAILED [ 16%]
09:56:49 test/integration/clitest/test_download.py::TestDownload::testImageNoFileset PASSED [ 16%]
09:56:54 test/integration/clitest/test_download.py::TestDownload::testImageMultipleGroups FAILED [ 16%]
09:56:54 test/integration/clitest/test_download.py::TestDownload::testValidPolicy PASSED [ 16%]
09:57:06 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[+read,+write,+image] FAILED [ 16%]
09:57:06 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[-read,-write,-image,-plate] SKIPPED [ 17%]
09:57:06 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[-read,+write,+image,-plate] SKIPPED [ 17%]
09:57:06 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[+read,+write,+image,-plate] SKIPPED [ 17%]
09:57:06 test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[+read,+write,+image,+plate] SKIPPED [ 17%]
09:57:18 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image] FAILED [ 17%]
09:57:30 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[-read,-write,-image,-plate] PASSED [ 17%]
09:57:43 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[-read,+write,+image,-plate] FAILED [ 17%]
09:57:55 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image,-plate] FAILED [ 17%]
09:58:07 test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image,+plate] FAILED [ 17%]
09:58:09 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Image-] PASSED [ 17%]
09:58:09 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Image-I] PASSED [ 17%]
09:58:09 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Dataset-] PASSED [ 17%]
09:58:09 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Dataset-I] PASSED [ 17%]
09:58:09 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Project-] PASSED [ 17%]
09:58:09 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Project-I] PASSED [ 17%]
09:58:09 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Plate-] PASSED [ 17%]
09:58:09 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Plate-I] PASSED [ 17%]
09:58:10 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Screen-] PASSED [ 17%]
09:58:10 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObject[Screen-I] PASSED [ 17%]
09:58:10 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObjectDryRun PASSED [ 17%]
09:58:10 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObjectReport PASSED [ 18%]
09:58:10 test/integration/clitest/test_duplicate.py::TestDuplicate::testDuplicateSingleObjectDryRunReport PASSED [ 18%]
09:58:10 test/integration/clitest/test_duplicate.py::TestDuplicate::testBasicHierarchyDuplication PASSED [ 18%]
09:58:10 test/integration/clitest/test_duplicate.py::TestDuplicate::testIgnoreLinks PASSED [ 18%]
09:58:10 test/integration/clitest/test_duplicate.py::TestDuplicate::testIgnoreLinksOverridden PASSED [ 18%]
09:58:10 test/integration/clitest/test_duplicate.py::TestDuplicate::testReferencing PASSED [ 18%]
09:58:10 test/integration/clitest/test_duplicate.py::TestDuplicate::testSkipheadDuplication PASSED [ 18%]
09:58:12 test/integration/clitest/test_fs.py::TestFS::testRepos PASSED [ 18%]
09:58:32 test/integration/clitest/test_fs.py::TestFS::testSetsWithTransfer PASSED [ 18%]
09:58:32 test/integration/clitest/test_fs.py::TestFS::testSetsAdminOnly PASSED [ 18%]
09:58:32 test/integration/clitest/test_fs.py::TestFS::testMkdirAdminOnly PASSED [ 18%]
09:58:36 test/integration/clitest/test_fs.py::TestFS::testImportTime[all-True] PASSED [ 18%]
09:58:40 test/integration/clitest/test_fs.py::TestFS::testImportTime[all-False] PASSED [ 18%]
09:58:44 test/integration/clitest/test_fs.py::TestFS::testImportTime[minmax-True] PASSED [ 18%]
09:58:48 test/integration/clitest/test_fs.py::TestFS::testImportTime[minmax-False] PASSED [ 18%]
09:58:52 test/integration/clitest/test_fs.py::TestFS::testImportTime[thumbnails-True] PASSED [ 18%]
09:58:55 test/integration/clitest/test_fs.py::TestFS::testImportTime[thumbnails-False] PASSED [ 18%]
09:58:57 test/integration/clitest/test_fs.py::TestFsRoot::testMkdirAsAdminSimpleDirCreation PASSED [ 18%]
09:58:57 test/integration/clitest/test_fs.py::TestFsRoot::testMkdirAsAdminHierarchyOnlyPreexisting PASSED [ 18%]
09:58:57 test/integration/clitest/test_fs.py::TestFsRoot::testMkdirAsAdminHierarchyParents PASSED [ 18%]
09:59:05 test/integration/clitest/test_group.py::TestGroup::testList[None-None] PASSED [ 19%]
09:59:08 test/integration/clitest/test_group.py::TestGroup::testList[None-id] PASSED [ 19%]
09:59:11 test/integration/clitest/test_group.py::TestGroup::testList[None-name] PASSED [ 19%]
09:59:15 test/integration/clitest/test_group.py::TestGroup::testList[count-None] PASSED [ 19%]
09:59:18 test/integration/clitest/test_group.py::TestGroup::testList[count-id] PASSED [ 19%]
09:59:21 test/integration/clitest/test_group.py::TestGroup::testList[count-name] PASSED [ 19%]
09:59:24 test/integration/clitest/test_group.py::TestGroup::testList[long-None] PASSED [ 19%]
09:59:28 test/integration/clitest/test_group.py::TestGroup::testList[long-id] PASSED [ 19%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testList[long-name] PASSED [ 19%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testAddAdminOnly PASSED [ 19%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testInfoNoArgument PASSED [ 19%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testInfoArgument[id] PASSED [ 19%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testInfoArgument[name] PASSED [ 19%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testInfoArgument[--group-id] PASSED [ 19%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testInfoArgument[--group-name] PASSED [ 19%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testInfoInvalidGroup PASSED [ 19%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testListUsersNoArgument PASSED [ 19%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testListUsersArgument[id] PASSED [ 19%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testListUsersArgument[name] PASSED [ 19%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testListUsersArgument[--group-id] PASSED [ 19%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testListUsersArgument[--group-name] PASSED [ 20%]
09:59:31 test/integration/clitest/test_group.py::TestGroup::testListUsersInvalidArgument PASSED [ 20%]
09:59:33 test/integration/clitest/test_group.py::TestGroupRoot::testAddDefaults PASSED [ 20%]
09:59:33 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--perms-rw----] PASSED [ 20%]
09:59:33 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--perms-rwr---] PASSED [ 20%]
09:59:33 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--perms-rwra--] PASSED [ 20%]
09:59:33 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--perms-rwrw--] PASSED [ 20%]
09:59:33 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--type-private] PASSED [ 20%]
09:59:34 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--type-read-only] PASSED [ 20%]
09:59:34 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--type-read-annotate] PASSED [ 20%]
09:59:34 test/integration/clitest/test_group.py::TestGroupRoot::testAddPerms[--type-read-write] PASSED [ 20%]
09:59:34 test/integration/clitest/test_group.py::TestGroupRoot::testAddSameNamefails PASSED [ 20%]
09:59:34 test/integration/clitest/test_group.py::TestGroupRoot::testAddIgnoreExisting PASSED [ 20%]
09:59:34 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rw-------id] PASSED [ 20%]
09:59:34 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rw-------name] PASSED [ 20%]
09:59:35 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwr------id] PASSED [ 20%]
09:59:35 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwr------name] PASSED [ 20%]
09:59:36 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwra-----id] PASSED [ 20%]
09:59:37 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwra-----name] PASSED [ 20%]
09:59:38 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwrw-----id] PASSED [ 20%]
09:59:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rw-----rwrw-----name] PASSED [ 20%]
09:59:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rw-------id] PASSED [ 21%]
09:59:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rw-------name] PASSED [ 21%]
09:59:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwr------id] PASSED [ 21%]
09:59:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwr------name] PASSED [ 21%]
09:59:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwra-----id] PASSED [ 21%]
09:59:39 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwra-----name] PASSED [ 21%]
09:59:40 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwrw-----id] PASSED [ 21%]
09:59:40 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwr----rwrw-----name] PASSED [ 21%]
09:59:40 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rw-------id] PASSED [ 21%]
09:59:40 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rw-------name] PASSED [ 21%]
09:59:40 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwr------id] PASSED [ 21%]
09:59:41 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwr------name] PASSED [ 21%]
09:59:41 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwra-----id] PASSED [ 21%]
09:59:41 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwra-----name] PASSED [ 21%]
09:59:41 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwrw-----id] PASSED [ 21%]
09:59:41 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwra---rwrw-----name] PASSED [ 21%]
09:59:41 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rw-------id] PASSED [ 21%]
09:59:41 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rw-------name] PASSED [ 21%]
09:59:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwr------id] PASSED [ 21%]
09:59:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwr------name] PASSED [ 21%]
09:59:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwra-----id] PASSED [ 22%]
09:59:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwra-----name] PASSED [ 22%]
09:59:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwrw-----id] PASSED [ 22%]
09:59:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--perms-rwrw---rwrw-----name] PASSED [ 22%]
09:59:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rw-------id] PASSED [ 22%]
09:59:42 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rw-------name] PASSED [ 22%]
09:59:43 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwr------id] PASSED [ 22%]
09:59:44 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwr------name] PASSED [ 22%]
09:59:44 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwra-----id] PASSED [ 22%]
09:59:45 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwra-----name] PASSED [ 22%]
09:59:46 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwrw-----id] PASSED [ 22%]
09:59:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-private-rwrw-----name] PASSED [ 22%]
09:59:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rw-------id] PASSED [ 22%]
09:59:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rw-------name] PASSED [ 22%]
09:59:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwr------id] PASSED [ 22%]
09:59:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwr------name] PASSED [ 22%]
09:59:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwra-----id] PASSED [ 22%]
09:59:47 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwra-----name] PASSED [ 22%]
09:59:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwrw-----id] PASSED [ 22%]
09:59:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-only-rwrw-----name] PASSED [ 22%]
09:59:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rw-------id] PASSED [ 23%]
09:59:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rw-------name] PASSED [ 23%]
09:59:48 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwr------id] PASSED [ 23%]
09:59:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwr------name] PASSED [ 23%]
09:59:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwra-----id] PASSED [ 23%]
09:59:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwra-----name] PASSED [ 23%]
09:59:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwrw-----id] PASSED [ 23%]
09:59:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-annotate-rwrw-----name] PASSED [ 23%]
09:59:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rw-------id] PASSED [ 23%]
09:59:49 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rw-------name] PASSED [ 23%]
09:59:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwr------id] PASSED [ 23%]
09:59:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwr------name] PASSED [ 23%]
09:59:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwra-----id] PASSED [ 23%]
09:59:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwra-----name] PASSED [ 23%]
09:59:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwrw-----id] PASSED [ 23%]
09:59:50 test/integration/clitest/test_group.py::TestGroupRoot::testPerms[--type-read-write-rwrw-----name] PASSED [ 23%]
09:59:52 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-id---id] PASSED [ 23%]
09:59:54 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-id---name] PASSED [ 23%]
09:59:56 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-omeName---id] PASSED [ 23%]
09:59:57 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None-omeName---name] PASSED [ 23%]
09:59:59 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-id---id] PASSED [ 24%]
10:00:01 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-id---name] PASSED [ 24%]
10:00:02 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-name---id] PASSED [ 24%]
10:00:04 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[None---user-name---name] PASSED [ 24%]
10:00:06 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-id---id] PASSED [ 24%]
10:00:08 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-id---name] PASSED [ 24%]
10:00:10 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-omeName---id] PASSED [ 24%]
10:00:11 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner-omeName---name] PASSED [ 24%]
10:00:13 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-id---id] PASSED [ 24%]
10:00:15 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-id---name] PASSED [ 24%]
10:00:17 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-name---id] PASSED [ 24%]
10:00:18 test/integration/clitest/test_group.py::TestGroupRoot::testAddUser[--as-owner---user-name---name] PASSED [ 24%]
10:00:20 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-id---id] PASSED [ 24%]
10:00:22 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-id---name] PASSED [ 24%]
10:00:24 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-omeName---id] PASSED [ 24%]
10:00:25 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True-omeName---name] PASSED [ 24%]
10:00:27 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-id---id] PASSED [ 24%]
10:00:29 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-id---name] PASSED [ 24%]
10:00:31 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-name---id] PASSED [ 24%]
10:00:33 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-True---user-name---name] PASSED [ 24%]
10:00:34 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-id---id] PASSED [ 24%]
10:00:36 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-id---name] PASSED [ 25%]
10:00:38 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-omeName---id] PASSED [ 25%]
10:00:40 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False-omeName---name] PASSED [ 25%]
10:00:41 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-id---id] PASSED [ 25%]
10:00:43 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-id---name] PASSED [ 25%]
10:00:45 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-name---id] PASSED [ 25%]
10:00:47 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[None-False---user-name---name] PASSED [ 25%]
10:00:49 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-id---id] PASSED [ 25%]
10:00:50 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-id---name] PASSED [ 25%]
10:00:52 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-omeName---id] PASSED [ 25%]
10:00:54 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True-omeName---name] PASSED [ 25%]
10:00:56 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-id---id] PASSED [ 25%]
10:00:58 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-id---name] PASSED [ 25%]
10:00:59 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-name---id] PASSED [ 25%]
10:01:01 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-True---user-name---name] PASSED [ 25%]
10:01:03 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-id---id] PASSED [ 25%]
10:01:05 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-id---name] PASSED [ 25%]
10:01:06 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-omeName---id] PASSED [ 25%]
10:01:08 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False-omeName---name] PASSED [ 25%]
10:01:10 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-id---id] PASSED [ 25%]
10:01:12 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-id---name] PASSED [ 26%]
10:01:13 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-name---id] PASSED [ 26%]
10:01:15 test/integration/clitest/test_group.py::TestGroupRoot::testRemoveUser[--as-owner-False---user-name---name] PASSED [ 26%]
10:01:22 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-id-id] PASSED [ 26%]
10:01:29 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-id-name] PASSED [ 26%]
10:01:36 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-name-id] PASSED [ 26%]
10:01:43 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[None-name-name] PASSED [ 26%]
10:01:50 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-id-id] PASSED [ 26%]
10:01:57 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-id-name] PASSED [ 26%]
10:02:04 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-name-id] PASSED [ 26%]
10:02:11 test/integration/clitest/test_group.py::TestGroupRoot::testCopyUsers[--as-owner-name-name] PASSED [ 26%]
10:02:16 test/integration/clitest/test_import.py::TestImport::testAutoClose PASSED [ 26%]
10:02:18 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Adler-32-legacy] PASSED [ 26%]
10:02:20 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Adler-32-underscore] PASSED [ 26%]
10:02:22 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[CRC-32-underscore] PASSED [ 26%]
10:02:25 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[File-Size-64-underscore] PASSED [ 26%]
10:02:27 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[MD5-128-underscore] PASSED [ 26%]
10:02:29 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Murmur3-32-underscore] PASSED [ 26%]
10:02:31 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[Murmur3-128-underscore] PASSED [ 26%]
10:02:33 test/integration/clitest/test_import.py::TestImport::testChecksumAlgorithm[SHA1-160-underscore] PASSED [ 26%]
10:02:35 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Official-True] PASSED [ 27%]
10:02:37 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Official-False] PASSED [ 27%]
10:02:40 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Deprecated-True] PASSED [ 27%]
10:02:42 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Python-1-Deprecated-False] PASSED [ 27%]
10:02:44 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Official-True] PASSED [ 27%]
10:02:46 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Official-False] PASSED [ 27%]
10:02:48 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Deprecated-True] PASSED [ 27%]
10:02:50 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-1-Deprecated-False] PASSED [ 27%]
10:02:53 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Official-True] PASSED [ 27%]
10:02:55 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Official-False] PASSED [ 27%]
10:02:57 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Deprecated-True] PASSED [ 27%]
10:02:59 test/integration/clitest/test_import.py::TestImport::testAnnotationText[Java-2-Deprecated-False] PASSED [ 27%]
10:03:02 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Python-1-Official] PASSED [ 27%]
10:03:04 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Python-1-Deprecated] PASSED [ 27%]
10:03:06 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-1-Official] PASSED [ 27%]
10:03:08 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-1-Deprecated] PASSED [ 27%]
10:03:11 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-2-Official] PASSED [ 27%]
10:03:13 test/integration/clitest/test_import.py::TestImport::testAnnotationText_one_ns[Java-2-Deprecated] PASSED [ 27%]
10:03:15 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Python-1-Official] PASSED [ 27%]
10:03:17 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Python-1-Deprecated] PASSED [ 27%]
10:03:20 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Java-1-Official] PASSED [ 28%]
10:03:22 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Java-1-Deprecated] PASSED [ 28%]
10:03:24 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Java-2-Official] PASSED [ 28%]
10:03:26 test/integration/clitest/test_import.py::TestImport::testAnnotationLink[Java-2-Deprecated] PASSED [ 28%]
10:03:33 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source0-True] PASSED [ 28%]
10:03:38 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source0-False] PASSED [ 28%]
10:03:44 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source1-True] PASSED [ 28%]
10:03:48 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source1-False] PASSED [ 28%]
10:03:55 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source2-True] PASSED [ 28%]
10:03:59 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source2-False] PASSED [ 28%]
10:04:05 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source3-True] PASSED [ 28%]
10:04:10 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source3-False] PASSED [ 28%]
10:04:16 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source4-True] PASSED [ 28%]
10:04:20 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source4-False] PASSED [ 28%]
10:04:26 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source5-True] PASSED [ 28%]
10:04:30 test/integration/clitest/test_import.py::TestImport::testTargetArgument[source5-False] PASSED [ 28%]
10:04:36 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[-True] PASSED [ 28%]
10:04:40 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[-False] PASSED [ 28%]
10:04:46 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[+-True] PASSED [ 28%]
10:04:51 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[+-False] PASSED [ 28%]
10:04:56 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[--True] PASSED [ 28%]
10:05:01 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[--False] PASSED [ 29%]
10:05:07 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[%-True] PASSED [ 29%]
10:05:12 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[%-False] PASSED [ 29%]
10:05:18 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[@-True] PASSED [ 29%]
10:05:23 test/integration/clitest/test_import.py::TestImport::testQualifiedNameModelTargetArgument[@-False] PASSED [ 29%]
10:05:28 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[-True] PASSED [ 29%]
10:05:33 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[-False] PASSED [ 29%]
10:05:38 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[+-True] PASSED [ 29%]
10:05:43 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[+-False] PASSED [ 29%]
10:05:48 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[--True] PASSED [ 29%]
10:05:53 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[--False] PASSED [ 29%]
10:05:58 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[%-True] PASSED [ 29%]
10:06:03 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[%-False] PASSED [ 29%]
10:06:08 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[@-True] PASSED [ 29%]
10:06:12 test/integration/clitest/test_import.py::TestImport::testQualifiedNameTemplateTargetArgument[@-False] PASSED [ 29%]
10:06:15 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[-True] PASSED [ 29%]
10:06:17 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[-False] PASSED [ 29%]
10:06:20 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[+-True] PASSED [ 29%]
10:06:22 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[+-False] PASSED [ 29%]
10:06:25 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[--True] PASSED [ 29%]
10:06:27 test/integration/clitest/test_import.py::TestImport::testMultipleNameModelTargets[--False] PASSED [ 30%]
10:06:29 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameModelTargets[True] PASSED [ 30%]
10:06:31 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameModelTargets[False] PASSED [ 30%]
10:06:34 test/integration/clitest/test_import.py::TestImport::testNestedNameTemplateTargetArgument[True] PASSED [ 30%]
10:06:37 test/integration/clitest/test_import.py::TestImport::testNestedNameTemplateTargetArgument[False] PASSED [ 30%]
10:06:40 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[-True] PASSED [ 30%]
10:06:42 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[-False] PASSED [ 30%]
10:06:45 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[+-True] PASSED [ 30%]
10:06:48 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[+-False] PASSED [ 30%]
10:06:50 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[--True] PASSED [ 30%]
10:06:53 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[--False] PASSED [ 30%]
10:06:55 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[@-True] PASSED [ 30%]
10:06:57 test/integration/clitest/test_import.py::TestImport::testMultipleNameTemplateTargetArgument[@-False] PASSED [ 30%]
10:07:00 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameTemplateTargetArgument[True] PASSED [ 30%]
10:07:03 test/integration/clitest/test_import.py::TestImport::testUniqueMultipleNameTemplateTargetArgument[False] PASSED [ 30%]
10:07:09 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[False-False] PASSED [ 30%]
10:07:15 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[False-True] PASSED [ 30%]
10:07:21 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[True-False] PASSED [ 30%]
10:07:27 test/integration/clitest/test_import.py::TestImport::testImportLinkableTarget[True-True] PASSED [ 30%]
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10:13:59 test/integration/clitest/test_search.py::TestSearch::test_search_basic PASSED [ 37%]
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10:14:23 test/integration/clitest/test_search.py::TestSearch::test_search_style PASSED [ 37%]
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10:14:47 test/integration/clitest/test_search.py::TestSearch::test_search_other_dates[data0] PASSED [ 37%]
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10:15:18 test/integration/clitest/test_search.py::TestSearch::test_search_no_parse PASSED [ 38%]
10:15:20 test/integration/clitest/test_search.py::TestSearch::test_search_dataset_acquisition PASSED [ 38%]
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10:15:29 test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-True] PASSED [ 38%]
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10:16:08 test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-True] PASSED [ 38%]
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10:16:34 test/integration/clitest/test_sessions.py::TestSessions::test_close PASSED [ 39%]
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10:17:27 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----owner-admin] PASSED [ 40%]
10:17:30 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----owner-owner] PASSED [ 40%]
10:17:34 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----owner-member] PASSED [ 40%]
10:17:38 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----member-admin] PASSED [ 41%]
10:17:41 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----member-owner] PASSED [ 41%]
10:17:45 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwr----member-member] PASSED [ 41%]
10:17:49 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---admin-admin] PASSED [ 41%]
10:17:53 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---admin-owner] PASSED [ 41%]
10:17:56 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---admin-member] PASSED [ 41%]
10:18:00 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---owner-admin] PASSED [ 41%]
10:18:04 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---owner-owner] PASSED [ 41%]
10:18:08 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---owner-member] PASSED [ 41%]
10:18:11 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---member-admin] PASSED [ 41%]
10:18:15 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---member-owner] PASSED [ 41%]
10:18:19 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwra---member-member] PASSED [ 41%]
10:18:22 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---admin-admin] PASSED [ 41%]
10:18:26 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---admin-owner] PASSED [ 41%]
10:18:30 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---admin-member] PASSED [ 41%]
10:18:34 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---owner-admin] PASSED [ 41%]
10:18:37 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---owner-owner] PASSED [ 41%]
10:18:41 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---owner-member] PASSED [ 41%]
10:18:45 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---member-admin] PASSED [ 41%]
10:18:49 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---member-owner] PASSED [ 41%]
10:18:52 test/integration/clitest/test_tag.py::TestPermissions::testLink[rwrw---member-member] PASSED [ 42%]
10:18:55 test/integration/clitest/test_tag.py::TestTagList::testList[] PASSED [ 42%]
10:18:55 test/integration/clitest/test_tag.py::TestTagList::testList[--nopage] PASSED [ 42%]
10:18:55 test/integration/clitest/test_tag.py::TestTagList::testListSets[] PASSED [ 42%]
10:18:55 test/integration/clitest/test_tag.py::TestTagList::testListSets[--nopage] PASSED [ 42%]
10:18:57 test/integration/clitest/test_upload.py::TestUpload::testUploadSingleFile PASSED [ 42%]
10:18:57 test/integration/clitest/test_upload.py::TestUpload::testUploadMultipleFiles PASSED [ 42%]
10:18:57 test/integration/clitest/test_upload.py::TestUpload::testUploadBadFile PASSED [ 42%]
10:19:12 test/integration/clitest/test_user.py::TestUser::testList[None-None] PASSED [ 42%]
10:19:21 test/integration/clitest/test_user.py::TestUser::testList[None-id] PASSED [ 42%]
10:19:31 test/integration/clitest/test_user.py::TestUser::testList[None-login] PASSED [ 42%]
10:19:40 test/integration/clitest/test_user.py::TestUser::testList[None-first-name] PASSED [ 42%]
10:19:50 test/integration/clitest/test_user.py::TestUser::testList[None-last-name] PASSED [ 42%]
10:20:00 test/integration/clitest/test_user.py::TestUser::testList[None-email] PASSED [ 42%]
10:20:09 test/integration/clitest/test_user.py::TestUser::testList[count-None] PASSED [ 42%]
10:20:19 test/integration/clitest/test_user.py::TestUser::testList[count-id] PASSED [ 42%]
10:20:29 test/integration/clitest/test_user.py::TestUser::testList[count-login] PASSED [ 42%]
10:20:38 test/integration/clitest/test_user.py::TestUser::testList[count-first-name] PASSED [ 42%]
10:20:48 test/integration/clitest/test_user.py::TestUser::testList[count-last-name] PASSED [ 42%]
10:20:58 test/integration/clitest/test_user.py::TestUser::testList[count-email] PASSED [ 42%]
10:21:08 test/integration/clitest/test_user.py::TestUser::testList[long-None] PASSED [ 43%]
10:21:17 test/integration/clitest/test_user.py::TestUser::testList[long-id] PASSED [ 43%]
10:21:27 test/integration/clitest/test_user.py::TestUser::testList[long-login] PASSED [ 43%]
10:21:37 test/integration/clitest/test_user.py::TestUser::testList[long-first-name] PASSED [ 43%]
10:21:47 test/integration/clitest/test_user.py::TestUser::testList[long-last-name] PASSED [ 43%]
10:21:56 test/integration/clitest/test_user.py::TestUser::testList[long-email] PASSED [ 43%]
10:22:00 test/integration/clitest/test_user.py::TestUser::testListWithStyles[None] PASSED [ 43%]
10:22:03 test/integration/clitest/test_user.py::TestUser::testListWithStyles[sql] PASSED [ 43%]
10:22:06 test/integration/clitest/test_user.py::TestUser::testListWithStyles[csv] PASSED [ 43%]
10:22:10 test/integration/clitest/test_user.py::TestUser::testListWithStyles[plain] PASSED [ 43%]
10:22:13 test/integration/clitest/test_user.py::TestUser::testListWithStyles[json] PASSED [ 43%]
10:22:13 test/integration/clitest/test_user.py::TestUser::testInfoNoArgument PASSED [ 43%]
10:22:13 test/integration/clitest/test_user.py::TestUser::testInfoArgument[id] PASSED [ 43%]
10:22:13 test/integration/clitest/test_user.py::TestUser::testInfoArgument[omeName] PASSED [ 43%]
10:22:13 test/integration/clitest/test_user.py::TestUser::testInfoArgument[--user-id] PASSED [ 43%]
10:22:13 test/integration/clitest/test_user.py::TestUser::testInfoArgument[--user-name] PASSED [ 43%]
10:22:13 test/integration/clitest/test_user.py::TestUser::testInfoInvalidUser PASSED [ 43%]
10:22:16 test/integration/clitest/test_user.py::TestUser::testListGroupsNoArgument PASSED [ 43%]
10:22:19 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[id] PASSED [ 43%]
10:22:21 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[omeName] PASSED [ 43%]
10:22:24 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[--user-id] PASSED [ 44%]
10:22:27 test/integration/clitest/test_user.py::TestUser::testListGroupsArgument[--user-name] PASSED [ 44%]
10:22:27 test/integration/clitest/test_user.py::TestUser::testListGroupsInvalidArgument PASSED [ 44%]
10:22:30 test/integration/clitest/test_user.py::TestUser::testEmail[None] PASSED [ 44%]
10:22:34 test/integration/clitest/test_user.py::TestUser::testEmail[-1] PASSED [ 44%]
10:22:37 test/integration/clitest/test_user.py::TestUser::testEmail[--one] PASSED [ 44%]
10:22:43 test/integration/clitest/test_user.py::TestUser::testPassword[True] PASSED [ 44%]
10:22:43 test/integration/clitest/test_user.py::TestUser::testPassword[False] PASSED [ 44%]
10:22:43 test/integration/clitest/test_user.py::TestUser::testAddAdminOnly PASSED [ 44%]
10:22:50 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-id---id] PASSED [ 44%]
10:22:51 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-id---name] PASSED [ 44%]
10:22:54 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-name---id] PASSED [ 44%]
10:22:55 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None-name---name] PASSED [ 44%]
10:22:57 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-id---id] PASSED [ 44%]
10:22:59 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-id---name] PASSED [ 44%]
10:23:01 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-name---id] PASSED [ 44%]
10:23:03 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[None---group-name---name] PASSED [ 44%]
10:23:05 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-id---id] PASSED [ 44%]
10:23:07 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-id---name] PASSED [ 44%]
10:23:09 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-name---id] PASSED [ 44%]
10:23:11 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner-name---name] PASSED [ 44%]
10:23:13 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-id---id] PASSED [ 45%]
10:23:14 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-id---name] PASSED [ 45%]
10:23:16 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-name---id] PASSED [ 45%]
10:23:18 test/integration/clitest/test_user.py::TestUserRoot::testJoinGroup[--as-owner---group-name---name] PASSED [ 45%]
10:23:20 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-id---id] PASSED [ 45%]
10:23:22 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-id---name] PASSED [ 45%]
10:23:24 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-name---id] PASSED [ 45%]
10:23:26 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True-name---name] PASSED [ 45%]
10:23:28 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-id---id] PASSED [ 45%]
10:23:30 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-id---name] PASSED [ 45%]
10:23:31 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-name---id] PASSED [ 45%]
10:23:34 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-True---group-name---name] PASSED [ 45%]
10:23:36 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-id---id] PASSED [ 45%]
10:23:37 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-id---name] PASSED [ 45%]
10:23:39 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-name---id] PASSED [ 45%]
10:23:41 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False-name---name] PASSED [ 45%]
10:23:43 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-id---id] PASSED [ 45%]
10:23:45 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-id---name] PASSED [ 45%]
10:23:47 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-name---id] PASSED [ 45%]
10:23:49 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[None-False---group-name---name] PASSED [ 45%]
10:23:51 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-id---id] PASSED [ 46%]
10:23:53 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-id---name] PASSED [ 46%]
10:23:54 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-name---id] PASSED [ 46%]
10:23:57 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True-name---name] PASSED [ 46%]
10:23:59 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-id---id] PASSED [ 46%]
10:24:00 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-id---name] PASSED [ 46%]
10:24:02 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-name---id] PASSED [ 46%]
10:24:04 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-True---group-name---name] PASSED [ 46%]
10:24:06 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-id---id] PASSED [ 46%]
10:24:08 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-id---name] PASSED [ 46%]
10:24:10 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-name---id] PASSED [ 46%]
10:24:12 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False-name---name] PASSED [ 46%]
10:24:14 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-id---id] PASSED [ 46%]
10:24:16 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-id---name] PASSED [ 46%]
10:24:18 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-name---id] PASSED [ 46%]
10:24:20 test/integration/clitest/test_user.py::TestUserRoot::testLeaveGroup[--as-owner-False---group-name---name] PASSED [ 46%]
10:24:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None-None-None] PASSED [ 46%]
10:24:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None-None--m] PASSED [ 46%]
10:24:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None-None---middlename] PASSED [ 46%]
10:24:20 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None--e-None] PASSED [ 46%]
10:24:21 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None--e--m] PASSED [ 47%]
10:24:21 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None--e---middlename] PASSED [ 47%]
10:24:21 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None---email-None] PASSED [ 47%]
10:24:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None---email--m] PASSED [ 47%]
10:24:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None-None---email---middlename] PASSED [ 47%]
10:24:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i-None-None] PASSED [ 47%]
10:24:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i-None--m] PASSED [ 47%]
10:24:22 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i-None---middlename] PASSED [ 47%]
10:24:23 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i--e-None] PASSED [ 47%]
10:24:23 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i--e--m] PASSED [ 47%]
10:24:23 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i--e---middlename] PASSED [ 47%]
10:24:23 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i---email-None] PASSED [ 47%]
10:24:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i---email--m] PASSED [ 47%]
10:24:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None--i---email---middlename] PASSED [ 47%]
10:24:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution-None-None] PASSED [ 47%]
10:24:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution-None--m] PASSED [ 47%]
10:24:24 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution-None---middlename] PASSED [ 47%]
10:24:25 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution--e-None] PASSED [ 47%]
10:24:25 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution--e--m] PASSED [ 47%]
10:24:25 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution--e---middlename] PASSED [ 47%]
10:24:25 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution---email-None] PASSED [ 48%]
10:24:25 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution---email--m] PASSED [ 48%]
10:24:26 test/integration/clitest/test_user.py::TestUserRoot::testAdd[None---institution---email---middlename] PASSED [ 48%]
10:24:26 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None-None-None] PASSED [ 48%]
10:24:27 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None-None--m] PASSED [ 48%]
10:24:28 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None-None---middlename] PASSED [ 48%]
10:24:28 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None--e-None] PASSED [ 48%]
10:24:29 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None--e--m] PASSED [ 48%]
10:24:30 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None--e---middlename] PASSED [ 48%]
10:24:31 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None---email-None] PASSED [ 48%]
10:24:32 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None---email--m] PASSED [ 48%]
10:24:32 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a-None---email---middlename] PASSED [ 48%]
10:24:33 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i-None-None] PASSED [ 48%]
10:24:34 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i-None--m] PASSED [ 48%]
10:24:35 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i-None---middlename] PASSED [ 48%]
10:24:36 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i--e-None] PASSED [ 48%]
10:24:36 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i--e--m] PASSED [ 48%]
10:24:37 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i--e---middlename] PASSED [ 48%]
10:24:38 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i---email-None] PASSED [ 48%]
10:24:38 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i---email--m] PASSED [ 48%]
10:24:39 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a--i---email---middlename] PASSED [ 48%]
10:24:40 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution-None-None] PASSED [ 49%]
10:24:41 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution-None--m] PASSED [ 49%]
10:24:42 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution-None---middlename] PASSED [ 49%]
10:24:43 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution--e-None] PASSED [ 49%]
10:24:43 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution--e--m] PASSED [ 49%]
10:24:44 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution--e---middlename] PASSED [ 49%]
10:24:45 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution---email-None] PASSED [ 49%]
10:24:46 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution---email--m] PASSED [ 49%]
10:24:46 test/integration/clitest/test_user.py::TestUserRoot::testAdd[-a---institution---email---middlename] PASSED [ 49%]
10:24:48 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None-None-None] PASSED [ 49%]
10:24:48 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None-None--m] PASSED [ 49%]
10:24:49 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None-None---middlename] PASSED [ 49%]
10:24:50 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None--e-None] PASSED [ 49%]
10:24:51 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None--e--m] PASSED [ 49%]
10:24:52 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None--e---middlename] PASSED [ 49%]
10:24:53 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None---email-None] PASSED [ 49%]
10:24:54 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None---email--m] PASSED [ 49%]
10:24:55 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin-None---email---middlename] PASSED [ 49%]
10:24:55 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i-None-None] PASSED [ 49%]
10:24:56 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i-None--m] PASSED [ 49%]
10:24:57 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i-None---middlename] PASSED [ 50%]
10:24:58 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i--e-None] PASSED [ 50%]
10:24:59 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i--e--m] PASSED [ 50%]
10:25:00 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i--e---middlename] PASSED [ 50%]
10:25:01 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i---email-None] PASSED [ 50%]
10:25:02 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i---email--m] PASSED [ 50%]
10:25:03 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin--i---email---middlename] PASSED [ 50%]
10:25:04 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution-None-None] PASSED [ 50%]
10:25:04 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution-None--m] PASSED [ 50%]
10:25:05 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution-None---middlename] PASSED [ 50%]
10:25:06 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution--e-None] PASSED [ 50%]
10:25:08 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution--e--m] PASSED [ 50%]
10:25:08 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution--e---middlename] PASSED [ 50%]
10:25:09 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution---email-None] PASSED [ 50%]
10:25:10 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution---email--m] PASSED [ 50%]
10:25:11 test/integration/clitest/test_user.py::TestUserRoot::testAdd[--admin---institution---email---middlename] PASSED [ 50%]
10:25:12 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[id] PASSED [ 50%]
10:25:12 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[name] PASSED [ 50%]
10:25:13 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[--group-id] PASSED [ 50%]
10:25:13 test/integration/clitest/test_user.py::TestUserRoot::testAddGroup[--group-name] PASSED [ 50%]
10:25:13 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[True-None] PASSED [ 51%]
10:25:14 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[True--P] PASSED [ 51%]
10:25:14 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[True---userpassword] PASSED [ 51%]
10:25:15 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[False-None] PASSED [ 51%]
10:25:15 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[False--P] PASSED [ 51%]
10:25:16 test/integration/clitest/test_user.py::TestUserRoot::testAddPassword[False---userpassword] PASSED [ 51%]
10:25:16 test/integration/clitest/test_user.py::TestUserRoot::testAddNoPassword PASSED [ 51%]
10:25:24 test/integration/clitest/test_user.py::TestUserRoot::testPassword[True] PASSED [ 51%]
10:25:26 test/integration/clitest/test_user.py::TestUserRoot::testPassword[False] PASSED [ 51%]
10:25:29 test/integration/fstest/test_rename.py::TestRename::test_dir PASSED [ 51%]
10:25:37 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data0] PASSED [ 51%]
10:25:46 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data1] PASSED [ 51%]
10:25:54 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data2] PASSED [ 51%]
10:26:05 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data3] PASSED [ 51%]
10:26:14 test/integration/fstest/test_rename.py::TestRename::test_rename_permissions[data4] PASSED [ 51%]
10:26:18 test/integration/fstest/test_rename.py::TestRename::test_rename_annotation PASSED [ 51%]
10:26:19 test/integration/fstest/test_rename.py::TestRename::test_prep_and_delete PASSED [ 51%]
10:26:25 test/integration/gatewaytest/test_annotation.py::testSameOwner PASSED [ 51%]
10:26:26 test/integration/gatewaytest/test_annotation.py::testCommentAnnotation PASSED [ 51%]
10:26:27 test/integration/gatewaytest/test_annotation.py::testNonDefGroupAnnotation PASSED [ 51%]
10:26:28 test/integration/gatewaytest/test_annotation.py::testTimestampAnnotation PASSED [ 52%]
10:26:29 test/integration/gatewaytest/test_annotation.py::testBooleanAnnotation PASSED [ 52%]
10:26:30 test/integration/gatewaytest/test_annotation.py::testLongAnnotation PASSED [ 52%]
10:26:31 test/integration/gatewaytest/test_annotation.py::testMapAnnotation PASSED [ 52%]
10:26:33 test/integration/gatewaytest/test_annotation.py::testDualLinkedAnnotation PASSED [ 52%]
10:26:34 test/integration/gatewaytest/test_annotation.py::testListAnnotations PASSED [ 52%]
10:26:35 test/integration/gatewaytest/test_annotation.py::testFileAnnotation PASSED [ 52%]
10:26:36 test/integration/gatewaytest/test_annotation.py::testFileAnnotationNoName PASSED [ 52%]
10:26:38 test/integration/gatewaytest/test_annotation.py::testFileAnnotationSpeed PASSED [ 52%]
10:26:40 test/integration/gatewaytest/test_annotation.py::testFileAnnNonDefaultGroup PASSED [ 52%]
10:26:41 test/integration/gatewaytest/test_annotation.py::testUnlinkAnnotation PASSED [ 52%]
10:26:42 test/integration/gatewaytest/test_annotation.py::testAnnotationCount PASSED [ 52%]
10:26:43 test/integration/gatewaytest/test_chgrp.py::testImageChgrp PASSED [ 52%]
10:26:44 test/integration/gatewaytest/test_chgrp.py::testDatasetChgrp PASSED [ 52%]
10:26:46 test/integration/gatewaytest/test_chgrp.py::testPDIChgrp PASSED [ 52%]
10:26:47 test/integration/gatewaytest/test_chgrp.py::testTwoDatasetsChgrpToProject PASSED [ 52%]
10:26:48 test/integration/gatewaytest/test_chgrp.py::testMultiDatasetDoAll PASSED [ 52%]
10:26:51 test/integration/gatewaytest/test_chmod.py::TestChmodGroup::testChmod PASSED [ 52%]
10:26:59 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testReadOnly PASSED [ 52%]
10:27:01 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testReadAnnotate PASSED [ 52%]
10:27:02 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testGroupMinusOne PASSED [ 52%]
10:27:04 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testReadWrite PASSED [ 53%]
10:27:05 test/integration/gatewaytest/test_chmod.py::TestCustomUsers::testDelete8723 PASSED [ 53%]
10:27:08 test/integration/gatewaytest/test_chmod.py::TestManualCreateEdit::testReadOnly PASSED [ 53%]
10:27:09 test/integration/gatewaytest/test_chmod.py::Test8800::testWithBlitzWrappers PASSED [ 53%]
10:27:10 test/integration/gatewaytest/test_chmod.py::Test8800::testWithoutWrappers PASSED [ 53%]
10:27:13 test/integration/gatewaytest/test_chmod.py::TestDefaultSetup::testAuthorCanEdit PASSED [ 53%]
10:27:20 test/integration/gatewaytest/test_chown.py::TestChown::test_chown_project PASSED [ 53%]
10:27:24 test/integration/gatewaytest/test_chown.py::TestChown::test_chown_pdi PASSED [ 53%]
10:27:26 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[foo] PASSED [ 53%]
10:27:28 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[False] PASSED [ 53%]
10:27:30 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[false] PASSED [ 53%]
10:27:32 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[True] PASSED [ 53%]
10:27:34 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[true] PASSED [ 53%]
10:27:36 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[] PASSED [ 53%]
10:27:38 test/integration/gatewaytest/test_config_service.py::testInterpolateSetting[None] PASSED [ 53%]
10:27:45 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testMultiProcessSession PASSED [ 53%]
10:27:45 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testClose ERROR [ 53%]
10:27:46 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testTopLevelObjects ERROR [ 53%]
10:27:46 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testCloseSession PASSED [ 53%]
10:27:46 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testMiscellaneous PASSED [ 53%]
10:27:46 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectUsingClient PASSED [ 54%]
10:27:47 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectUsingClientNoSessionWithIdentity PASSED [ 54%]
10:27:47 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectUsingClientSessionWithoutIdentity PASSED [ 54%]
10:27:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSessionId PASSED [ 54%]
10:27:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testConnectWithSessionId PASSED [ 54%]
10:27:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithSecureClient PASSED [ 54%]
10:27:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUnsecureClient PASSED [ 54%]
10:27:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUsername[None] PASSED [ 54%]
10:27:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUsername[False] PASSED [ 54%]
10:27:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureWithUsername[True] PASSED [ 54%]
10:27:48 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testSecureMisMatch PASSED [ 54%]
10:27:49 test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testHost PASSED [ 54%]
10:27:51 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectsUnwrapped PASSED [ 54%]
10:27:51 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjects PASSED [ 54%]
10:27:51 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectsWait PASSED [ 54%]
10:27:51 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectsDryRun PASSED [ 54%]
10:27:51 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteAnnotatedFileAnnotation PASSED [ 54%]
10:27:52 test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectDirect PASSED [ 54%]
10:27:53 test/integration/gatewaytest/test_fs.py::TestFileset::testCountArchivedFiles PASSED [ 54%]
10:27:53 test/integration/gatewaytest/test_fs.py::TestFileset::testCountFilesetFiles PASSED [ 54%]
10:27:53 test/integration/gatewaytest/test_fs.py::TestFileset::testCountImportedImageFiles PASSED [ 55%]
10:27:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedFilesInfo PASSED [ 55%]
10:27:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedFilesInfoWithAnnotations PASSED [ 55%]
10:27:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFiles PASSED [ 55%]
10:27:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedImageFiles PASSED [ 55%]
10:27:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFilesInfo PASSED [ 55%]
10:27:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfo PASSED [ 55%]
10:27:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfoWithAnnotations PASSED [ 55%]
10:27:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfoMultiple PASSED [ 55%]
10:27:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFilesetFilesInfoMultipleWithAnnotations PASSED [ 55%]
10:27:53 test/integration/gatewaytest/test_fs.py::TestFileset::testGetFileset PASSED [ 55%]
10:27:54 test/integration/gatewaytest/test_fs.py::TestFileset::testGetImportedImageFilePaths PASSED [ 55%]
10:27:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testCountArchivedFiles PASSED [ 55%]
10:27:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testCountFilesetFiles PASSED [ 55%]
10:27:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testCountImportedImageFiles PASSED [ 55%]
10:27:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetImportedFilesInfo PASSED [ 55%]
10:27:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFiles PASSED [ 55%]
10:27:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetImportedImageFiles PASSED [ 55%]
10:27:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFilesInfo PASSED [ 55%]
10:27:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetFilesetFilesInfo PASSED [ 55%]
10:27:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetFilesetFilesInfoMultiple PASSED [ 56%]
10:27:55 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetFileset PASSED [ 56%]
10:27:56 test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetImportedImageFilePaths PASSED [ 56%]
10:27:58 test/integration/gatewaytest/test_get_objects.py::TestDeleteObject::testDeleteAnnotation PASSED [ 56%]
10:27:59 test/integration/gatewaytest/test_get_objects.py::TestDeleteObject::testDeleteImage PASSED [ 56%]
10:28:00 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testIllegalObjTypeInt PASSED [ 56%]
10:28:00 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testObjTypeUnicode PASSED [ 56%]
10:28:00 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testObjTypeString PASSED [ 56%]
10:28:00 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindProject PASSED [ 56%]
10:28:00 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindExperimenter ERROR [ 56%]
10:28:01 test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindAnnotation PASSED [ 56%]
10:28:05 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testSearchObjects PASSED [ 56%]
10:28:05 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListProjects PASSED [ 56%]
10:28:05 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testPagination PASSED [ 56%]
10:28:05 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetDatasetsByProject PASSED [ 56%]
10:28:09 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListExperimentersAndGroups[True] PASSED [ 56%]
10:28:12 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListExperimentersAndGroups[False] PASSED [ 56%]
10:28:12 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListColleagues PASSED [ 56%]
10:28:14 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testFindExperimenterWithGroups PASSED [ 56%]
10:28:19 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetExperimentersByGroup[True] PASSED [ 56%]
10:28:23 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetExperimentersByGroup[False] PASSED [ 56%]
10:28:25 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetExperimenter PASSED [ 57%]
10:28:25 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetAnnotations ERROR [ 57%]
10:28:26 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImage ERROR [ 57%]
10:28:26 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-True] ERROR [ 57%]
10:28:27 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-False] ERROR [ 57%]
10:28:27 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-True] ERROR [ 57%]
10:28:27 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-False] ERROR [ 57%]
10:28:27 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetProject PASSED [ 57%]
10:28:28 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testTraversal ERROR [ 57%]
10:28:28 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False0-True] PASSED [ 57%]
10:28:29 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False0-False] PASSED [ 57%]
10:28:29 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False1-True] PASSED [ 57%]
10:28:29 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testListOrphans[False1-False] PASSED [ 57%]
10:28:30 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testOrderById PASSED [ 57%]
10:28:32 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Image] PASSED [ 57%]
10:28:34 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Dataset] PASSED [ 57%]
10:28:37 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Project] PASSED [ 57%]
10:28:39 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Screen] PASSED [ 57%]
10:28:42 test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetObjectsByMapAnnotations[Plate] PASSED [ 57%]
10:28:45 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGetGroupsLeaderOfAsLeader PASSED [ 57%]
10:28:45 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGetGroupsLeaderOfAsMember PASSED [ 58%]
10:28:48 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGetGroupsMemberOf PASSED [ 58%]
10:28:48 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwner PASSED [ 58%]
10:28:49 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMember PASSED [ 58%]
10:28:49 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwnerDeprecated PASSED [ 58%]
10:28:51 test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMemberDeprecated PASSED [ 58%]
10:28:53 test/integration/gatewaytest/test_get_objects.py::TestListParents::testSupportedObjects PASSED [ 58%]
10:28:55 test/integration/gatewaytest/test_get_objects.py::TestListParents::testListParentsPDI PASSED [ 58%]
10:28:57 test/integration/gatewaytest/test_get_objects.py::TestListParents::testListParentsSPW PASSED [ 58%]
10:28:59 test/integration/gatewaytest/test_get_objects.py::TestListParents::testExperimenterListParents PASSED [ 58%]
10:28:59 test/integration/gatewaytest/test_helpers.py::TestHelperObjects::testColorHolder PASSED [ 58%]
10:28:59 test/integration/gatewaytest/test_helpers.py::TestHelperObjects::testOmeroType PASSED [ 58%]
10:28:59 test/integration/gatewaytest/test_helpers.py::TestHelperObjects::testSplitHTMLColor PASSED [ 58%]
10:29:01 test/integration/gatewaytest/test_image.py::TestImage::testThumbnail ERROR [ 58%]
10:29:01 test/integration/gatewaytest/test_image.py::TestImage::testThumbnailSet ERROR [ 58%]
10:29:01 test/integration/gatewaytest/test_image.py::TestImage::testRenderingModels ERROR [ 58%]
10:29:02 test/integration/gatewaytest/test_image.py::TestImage::testSplitChannel ERROR [ 58%]
10:29:02 test/integration/gatewaytest/test_image.py::TestImage::testLinePlots ERROR [ 58%]
10:29:03 test/integration/gatewaytest/test_image.py::TestImage::testProjections ERROR [ 58%]
10:29:03 test/integration/gatewaytest/test_image.py::TestImage::testProperties ERROR [ 58%]
10:29:03 test/integration/gatewaytest/test_image.py::TestImage::testPixelSizeUnits ERROR [ 59%]
10:29:04 test/integration/gatewaytest/test_image.py::TestImage::testUnitsGetValue ERROR [ 59%]
10:29:04 test/integration/gatewaytest/test_image.py::TestImage::testChannelWavelengthUnits ERROR [ 59%]
10:29:04 test/integration/gatewaytest/test_image.py::TestImage::testExposureTimeUnits ERROR [ 59%]
10:29:05 test/integration/gatewaytest/test_image.py::TestImage::testShortname ERROR [ 59%]
10:29:05 test/integration/gatewaytest/test_image.py::TestImage::testImageDate ERROR [ 59%]
10:29:05 test/integration/gatewaytest/test_image.py::TestImage::testSimpleMarshal ERROR [ 59%]
10:29:05 test/integration/gatewaytest/test_image.py::TestImage::testExport ERROR [ 59%]
10:29:06 test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion ERROR [ 59%]
10:29:06 test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_resolution ERROR [ 59%]
10:29:07 test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_invalid_resolution ERROR [ 59%]
10:29:07 test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView ERROR [ 59%]
10:29:08 test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView_Size ERROR [ 59%]
10:29:09 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testGetDate PASSED [ 59%]
10:29:09 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testGetDateNoAcquisitionDate PASSED [ 59%]
10:29:09 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testSimpleMarshal PASSED [ 59%]
10:29:11 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testChannelLabel PASSED [ 59%]
10:29:11 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testChannelEmissionWaveLabel PASSED [ 59%]
10:29:12 test/integration/gatewaytest/test_image_wrapper.py::TestImageWrapper::testChannelNoLabel PASSED [ 59%]
10:29:14 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testThrowException PASSED [ 59%]
10:29:14 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testPrepareRenderingEngine PASSED [ 60%]
10:29:14 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testGetChannels PASSED [ 60%]
10:29:14 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testGetChannelsNoRe PASSED [ 60%]
10:29:15 test/integration/gatewaytest/test_missing_pyramid.py::TestPyramid::testGetRdefId PASSED [ 60%]
10:29:19 test/integration/gatewaytest/test_permissions.py::TestPrivileges::test_update_admin_privileges PASSED [ 60%]
10:29:24 test/integration/gatewaytest/test_permissions.py::TestPrivileges::test_full_admin_privileges PASSED [ 60%]
10:29:25 test/integration/gatewaytest/test_pixels.py::TestPixels::testReuseRawPixelsStore ERROR [ 60%]
10:29:25 test/integration/gatewaytest/test_pixels.py::TestPixels::testPlaneInfo ERROR [ 60%]
10:29:26 test/integration/gatewaytest/test_pixels.py::TestPixels::testPixelsType ERROR [ 60%]
10:29:26 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetTile ERROR [ 60%]
10:29:27 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlane ERROR [ 60%]
10:29:27 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnGetPlane ERROR [ 60%]
10:29:27 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnClose ERROR [ 60%]
10:29:28 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnBoth ERROR [ 60%]
10:29:29 test/integration/gatewaytest/test_pixels.py::TestPixels::testGetHistogram ERROR [ 60%]
10:29:31 test/integration/gatewaytest/test_plate_wrapper.py::TestPlateWrapper::testGetGridSize PASSED [ 60%]
10:29:32 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testDefault ERROR [ 60%]
10:29:33 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCustomized ERROR [ 60%]
10:29:33 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testChannelWindows ERROR [ 60%]
10:29:33 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testFloatDefaultMinMax ERROR [ 60%]
10:29:34 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testEmissionWave ERROR [ 60%]
10:29:34 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testBatchCopy ERROR [ 61%]
10:29:34 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGroupBasedPermissions ERROR [ 61%]
10:29:35 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetRdefs ERROR [ 61%]
10:29:35 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testResetDefaults ERROR [ 61%]
10:29:35 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettings ERROR [ 61%]
10:29:36 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsInvalid ERROR [ 61%]
10:29:36 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsBulk ERROR [ 61%]
10:29:36 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetChannelsNoRE ERROR [ 61%]
10:29:37 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsNoRE ERROR [ 61%]
10:29:37 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsWithRE ERROR [ 61%]
10:29:37 test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[True] ERROR [ 61%]
10:29:38 test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[False] ERROR [ 61%]
10:29:38 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testUnregisterService ERROR [ 61%]
10:29:38 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testRegisterService ERROR [ 61%]
10:29:40 test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCloseRE ERROR [ 61%]
10:29:42 test/integration/gatewaytest/test_search_objects.py::TestGetObject::testSearchObjects PASSED [ 61%]
10:29:43 test/integration/gatewaytest/test_services.py::TestServices::testDeleteServiceAuthor PASSED [ 61%]
10:29:45 test/integration/gatewaytest/test_services.py::TestServices::testDeleteServiceAdmin PASSED [ 61%]
10:29:48 test/integration/gatewaytest/test_services.py::TestTables::testTableRead PASSED [ 61%]
10:29:53 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirTrue_grpTrue_16 PASSED [ 61%]
10:29:56 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirTrue_grpTrue_96 PASSED [ 62%]
10:29:58 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirTrue_grpFalse_16 PASSED [ 62%]
10:30:00 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirTrue_grpFalse_96 PASSED [ 62%]
10:30:03 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirFalse_grpTrue_16 PASSED [ 62%]
10:30:05 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirFalse_grpTrue_96 PASSED [ 62%]
10:30:08 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirFalse_grpFalse_16 PASSED [ 62%]
10:30:10 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rw_root_dirFalse_grpFalse_96 PASSED [ 62%]
10:30:13 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirTrue_grpTrue_16 PASSED [ 62%]
10:30:16 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirTrue_grpTrue_96 PASSED [ 62%]
10:30:18 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirTrue_grpFalse_16 PASSED [ 62%]
10:30:20 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirTrue_grpFalse_96 PASSED [ 62%]
10:30:23 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirFalse_grpTrue_16 PASSED [ 62%]
10:30:25 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirFalse_grpTrue_96 PASSED [ 62%]
10:30:28 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirFalse_grpFalse_16 PASSED [ 62%]
10:30:30 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_root_dirFalse_grpFalse_96 PASSED [ 62%]
10:30:35 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirTrue_grpTrue_16 PASSED [ 62%]
10:30:39 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirTrue_grpTrue_96 PASSED [ 62%]
10:30:43 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirTrue_grpFalse_16 PASSED [ 62%]
10:30:48 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirTrue_grpFalse_96 PASSED [ 62%]
10:30:52 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirFalse_grpTrue_16 PASSED [ 62%]
10:30:57 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirFalse_grpTrue_96 PASSED [ 63%]
10:31:02 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirFalse_grpFalse_16 PASSED [ 63%]
10:31:06 test/integration/gatewaytest/test_ticket10618.py::Test10618::test_rwr_member_dirFalse_grpFalse_96 PASSED [ 63%]
10:31:08 test/integration/gatewaytest/test_user.py::TestUser::testUsers PASSED [ 63%]
10:31:08 test/integration/gatewaytest/test_user.py::TestUser::testSaveAs FAILED [ 63%]
10:31:11 test/integration/gatewaytest/test_user.py::TestUser::testCrossGroupSave PASSED [ 63%]
10:31:20 test/integration/gatewaytest/test_user.py::TestUser::testGroupOverObjPermissions PASSED [ 63%]
10:31:22 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testAllObjectsWrapped ERROR [ 63%]
10:31:23 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testProjectWrapper PASSED [ 63%]
10:31:24 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDatasetWrapper ERROR [ 63%]
10:31:24 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testExperimenterWrapper PASSED [ 63%]
10:31:24 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDetailsWrapper ERROR [ 63%]
10:31:24 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOriginalFileWrapperGetFileInChunks PASSED [ 63%]
10:31:24 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOriginalFileWrapperAsFileObj PASSED [ 63%]
10:31:24 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOriginalFileWrapperAsFileObjContextManager PASSED [ 63%]
10:31:24 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOriginalFileWrapperAsFileObjMultiple PASSED [ 63%]
10:31:24 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testSetters PASSED [ 63%]
10:31:25 test/integration/gatewaytest/test_wrapper.py::TestWrapper::testOther PASSED [ 63%]
10:31:27 test/integration/metadata/test_metadata_mapannotations.py::TestMapAnnotationManager::test_add_from_namespace_query PASSED [ 63%]
10:31:27 test/integration/metadata/test_metadata_mapannotations.py::TestMapAnnotationManager::test_add_from_namespace_query_duplicate PASSED [ 63%]
10:31:27 test/integration/metadata/test_metadata_mapannotations.py::TestMapAnnotationManager::test_update_existing_mapann PASSED [ 64%]
10:31:29 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigLoad::test_get_config_local PASSED [ 64%]
10:31:29 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigLoad::test_get_config_remote PASSED [ 64%]
10:31:40 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Screen2Plates] PASSED [ 64%]
10:31:44 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Plate2Wells] PASSED [ 64%]
10:31:48 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images] PASSED [ 64%]
10:31:52 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images1Missing] PASSED [ 64%]
10:32:00 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset101Images] PASSED [ 64%]
10:32:07 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Project2Datasets] PASSED [ 64%]
10:32:11 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-GZIP] PASSED [ 64%]
10:32:12 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Screen2Plates] PASSED [ 64%]
10:32:12 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Plate2Wells] PASSED [ 64%]
10:32:13 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images] PASSED [ 64%]
10:32:13 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images1Missing] PASSED [ 64%]
10:32:17 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset101Images] PASSED [ 64%]
10:32:18 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Project2Datasets] PASSED [ 64%]
10:32:18 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-GZIP] PASSED [ 64%]
10:32:18 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Screen2Plates] PASSED [ 64%]
10:32:19 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Plate2Wells] PASSED [ 64%]
10:32:19 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images] PASSED [ 64%]
10:32:20 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images1Missing] PASSED [ 64%]
10:32:21 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset101Images] PASSED [ 65%]
10:32:22 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Project2Datasets] PASSED [ 65%]
10:32:22 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-GZIP] PASSED [ 65%]
10:32:27 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadataNsAnns[Plate2WellsNs] PASSED [ 65%]
10:32:32 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadataNsAnns[Plate2WellsNs2] PASSED [ 65%]
10:32:37 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadataNsAnnsUnavailableHeader PASSED [ 65%]
10:32:41 test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadataNsAnnsFail PASSED [ 65%]
10:32:53 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedup[None] PASSED [ 65%]
10:33:04 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedup[openmicroscopy.org/omero/bulk_annotations] PASSED [ 65%]
10:33:15 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedup[openmicroscopy.org/mapr/gene] PASSED [ 65%]
10:33:26 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedupDelete[None] PASSED [ 65%]
10:33:38 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedupDelete[openmicroscopy.org/omero/bulk_annotations] PASSED [ 65%]
10:33:50 test/integration/metadata/test_populate.py::TestPopulateMetadataDedup::testPopulateMetadataNsAnnsDedupDelete[openmicroscopy.org/mapr/gene] PASSED [ 65%]
10:33:57 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[True-None] PASSED [ 65%]
10:34:03 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[True-openmicroscopy.org/omero/bulk_annotations] PASSED [ 65%]
10:34:09 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[True-openmicroscopy.org/omero/bulk_annotations/config] PASSED [ 65%]
10:34:16 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[False-None] PASSED [ 65%]
10:34:22 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[False-openmicroscopy.org/omero/bulk_annotations] PASSED [ 65%]
10:34:27 test/integration/metadata/test_populate.py::TestPopulateMetadataConfigFiles::test_delete_attach[False-openmicroscopy.org/omero/bulk_annotations/config] PASSED [ 65%]
10:34:34 test/integration/metadata/test_populate.py::TestPopulateRois::testPopulateRoisPlate PASSED [ 65%]
10:34:36 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_filename_yaml[yaml] PASSED [ 66%]
10:34:36 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_filename_yaml[Yml] PASSED [ 66%]
10:34:36 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_filename_json[json] PASSED [ 66%]
10:34:36 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_filename_json[JS] PASSED [ 66%]
10:34:36 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_yaml[format0] PASSED [ 66%]
10:34:36 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_yaml[format1] PASSED [ 66%]
10:34:36 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_yaml[format2] PASSED [ 66%]
10:34:36 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_json[format0] PASSED [ 66%]
10:34:37 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_json[format1] PASSED [ 66%]
10:34:37 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_get_format_originalfileid_json[format2] PASSED [ 66%]
10:34:37 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[json-True] PASSED [ 66%]
10:34:37 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[json-False] PASSED [ 66%]
10:34:37 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[yaml-True] PASSED [ 66%]
10:34:37 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load[yaml-False] PASSED [ 66%]
10:34:37 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load_fromstring PASSED [ 66%]
10:34:37 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_load_invalidtype PASSED [ 66%]
10:34:37 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_dump[json] PASSED [ 66%]
10:34:37 test/integration/metadata/test_pydict_text.py::TestPydictTextIo::test_dump[yaml] PASSED [ 66%]
10:34:40 test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testDefinition PASSED [ 66%]
10:34:40 test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testSimpleScript PASSED [ 66%]
10:34:46 test/integration/scriptstest/test_cli.py::TestCLI::testCLI PASSED [ 67%]
10:34:49 test/integration/scriptstest/test_coverage.py::TestCoverage::testGetScriptWithDetails PASSED [ 67%]
10:34:59 test/integration/scriptstest/test_coverage.py::TestCoverage::testUploadAndScript PASSED [ 67%]
10:34:59 test/integration/scriptstest/test_coverage.py::TestCoverage::testUserCantUploadOfficalScript PASSED [ 67%]
10:35:17 test/integration/scriptstest/test_inputs.py::TestInputs::testInputs PASSED [ 67%]
10:35:21 test/integration/scriptstest/test_ping.py::TestPing::testPingViaISCript PASSED [ 67%]
10:35:21 test/integration/scriptstest/test_ping.py::TestPing::testPingParametersViaISCript PASSED [ 67%]
10:35:23 test/integration/scriptstest/test_ping.py::TestPing::testPingStdout PASSED [ 67%]
10:35:30 test/integration/scriptstest/test_ping.py::TestPing::testProcessShutdown PASSED [ 67%]
10:35:30 test/integration/scriptstest/test_ping.py::TestPing::testProcessShutdownOneway PASSED [ 67%]
10:35:32 test/integration/scriptstest/test_ping.py::TestPing::testProcessorGetResultsBeforeFinished PASSED [ 67%]
10:35:33 test/integration/scriptstest/test_ping.py::TestPing::testProcessorExpires PASSED [ 67%]
10:35:33 test/integration/scriptstest/test_ping.py::TestPing::testProcessorGetJob PASSED [ 67%]
10:35:34 test/integration/scriptstest/test_ping.py::TestPing::testProcessorStop PASSED [ 67%]
10:35:35 test/integration/scriptstest/test_ping.py::TestPing::testProcessorDetach PASSED [ 67%]
10:35:53 test/integration/scriptstest/test_rand.py::TestRand::testRand PASSED [ 67%]
10:35:55 test/integration/scriptstest/test_repo.py::TestScriptRepo::testScriptRepo PASSED [ 67%]
10:35:55 test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetOfficialScripts PASSED [ 67%]
10:36:05 test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetUserScripts PASSED [ 67%]
10:36:05 test/integration/scriptstest/test_repo.py::TestScriptRepo::testCantUndulyLoadScriptRepoFromUuid PASSED [ 67%]
10:36:05 test/integration/scriptstest/test_repo.py::TestScriptRepo::testMultipleScriptPathsNotSupported PASSED [ 68%]
10:36:05 test/integration/scriptstest/test_repo.py::TestScriptRepo::testUploadingViaOfficialScriptShowsUpInRepo PASSED [ 68%]
10:36:05 test/integration/scriptstest/test_repo.py::TestScriptRepo::testUploadingViaNonOfficialScriptDoesntShowUpInRepo PASSED [ 68%]
10:36:10 test/integration/scriptstest/test_roi_handling_utils.py::TestRoiHandlingUtils::test_get_line_data PASSED [ 68%]
10:36:15 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_split_image PASSED [ 68%]
10:36:17 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_to_image PASSED [ 68%]
10:36:19 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_convert_numpy_array PASSED [ 68%]
10:36:22 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-tiff] Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f0aed7b1a60>
10:36:22 Traceback (most recent call last):
10:36:22 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
10:36:22 self.close()
10:36:22 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
10:36:22 unlink(self.name)
10:36:22 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmp2mc2ija8.tiff'
10:36:22 PASSED [ 68%]
10:36:25 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-foo] Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f0aed7b1a60>
10:36:25 Traceback (most recent call last):
10:36:25 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
10:36:25 self.close()
10:36:25 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
10:36:25 unlink(self.name)
10:36:25 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmp7gfnvtnh.foo'
10:36:25 PASSED [ 68%]
10:36:28 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[False-tiff] PASSED [ 68%]
10:36:30 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[False-foo] PASSED [ 68%]
10:36:30 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_create_file[] PASSED [ 68%]
10:36:30 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_create_file[text/x-python] PASSED [ 68%]
10:36:30 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_calc_sha1 PASSED [ 68%]
10:36:30 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_upload_file PASSED [ 68%]
10:36:30 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_download_file PASSED [ 68%]
10:36:33 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_get_objects PASSED [ 68%]
10:36:35 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_download_plane PASSED [ 68%]
10:36:37 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_upload_plane_by_row PASSED [ 68%]
10:36:39 test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_upload_plane PASSED [ 68%]
10:36:42 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_4_4_5::testCreateAllColumns_4_4_5 PASSED [ 68%]
10:36:43 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_4_4_5::testAllColumns_4_4_5 PASSED [ 69%]
10:36:45 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_4_4_5::testMetadataException PASSED [ 69%]
10:36:47 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_5_3_4::testCreateAllColumnsAndMetadata_5_3_4 PASSED [ 69%]
10:36:48 test/integration/tablestest/test_backwards_compatibility.py::TestBackwardsCompatibility_5_3_4::testAllColumnsAndMetadata_5_3_4 PASSED [ 69%]
10:36:51 test/integration/tablestest/test_populate_metadata.py::TestPopulateMetadata::testPopulateMetadataPlate PASSED [ 69%]
10:36:53 test/integration/tablestest/test_service.py::TestTables::testBlankTable PASSED [ 69%]
10:36:53 test/integration/tablestest/test_service.py::TestTables::testUpdate PASSED [ 69%]
10:36:53 test/integration/tablestest/test_service.py::TestTables::testTicket2175 PASSED [ 69%]
10:36:54 test/integration/tablestest/test_service.py::TestTables::testMask PASSED [ 69%]
10:36:54 test/integration/tablestest/test_service.py::TestTables::test2855MetadataMethods PASSED [ 69%]
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10:45:51 test/integration/test_ishare.py::TestIShare::test_bad_share PASSED [ 80%]
10:45:56 test/integration/test_ishare.py::TestIShare::test8513 PASSED [ 80%]
10:46:01 test/integration/test_ishare.py::TestIShare::test8704 PASSED [ 80%]
10:46:07 test/integration/test_ishare.py::TestIShare::test13018 PASSED [ 80%]
10:46:10 test/integration/test_itimeline.py::TestITimeline::testGeneral PASSED [ 80%]
10:46:12 test/integration/test_itimeline.py::TestITimeline::testCollaborativeTimeline PASSED [ 80%]
10:46:14 test/integration/test_itimeline.py::TestITimeline::test1173 PASSED [ 80%]
10:46:15 test/integration/test_itimeline.py::TestITimeline::test1175 PASSED [ 80%]
10:46:15 test/integration/test_itimeline.py::TestITimeline::test3234 PASSED [ 80%]
10:46:17 test/integration/test_itypes.py::TestTypes::testGetEnumerationTypes PASSED [ 80%]
10:46:17 test/integration/test_itypes.py::TestTypes::testAllEnumerations PASSED [ 80%]
10:46:17 test/integration/test_itypes.py::TestTypes::testGetEnumerationWithEntries PASSED [ 80%]
10:46:17 test/integration/test_itypes.py::TestTypes::testManageEnumeration PASSED [ 80%]
10:46:20 test/integration/test_iupdate.py::TestIUpdate::testSaveArray PASSED [ 81%]
10:46:20 test/integration/test_iupdate.py::TestIUpdate::testSaveCollection PASSED [ 81%]
10:46:20 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoOnCreation PASSED [ 81%]
10:46:20 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoAfterCreationTransient PASSED [ 81%]
10:46:20 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoAfterCreationManaged PASSED [ 81%]
10:46:20 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoNewInstance PASSED [ 81%]
10:46:20 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoNullInstance PASSED [ 81%]
10:46:20 test/integration/test_iupdate.py::TestIUpdate::testExternalInfoUpdateInstance PASSED [ 81%]
10:46:20 test/integration/test_iupdate.py::TestIUpdate::testCannotSaveDeleted PASSED [ 81%]
10:46:24 test/integration/test_librarytest.py::TestLibrary::test9188 PASSED [ 81%]
10:46:27 test/integration/test_mail.py::TestMail::testEveryone PASSED [ 81%]
10:46:30 test/integration/test_mail.py::TestMail::testUserAdd PASSED [ 81%]
10:46:35 test/integration/test_mail.py::TestMail::testComment PASSED [ 81%]
10:46:37 test/integration/test_mapannotation.py::TestMapAnnotation::testMapStringField PASSED [ 81%]
10:46:37 test/integration/test_mapannotation.py::TestMapAnnotation::testGroupConfigA[data0] PASSED [ 81%]
10:46:37 test/integration/test_mapannotation.py::TestMapAnnotation::testGroupConfigA[data1] PASSED [ 81%]
10:46:37 test/integration/test_mapannotation.py::TestMapAnnotation::testGroupConfigEdit PASSED [ 81%]
10:46:37 test/integration/test_mapannotation.py::TestMapAnnotation::testEmptyItem PASSED [ 81%]
10:46:37 test/integration/test_mapannotation.py::TestMapAnnotation::testBigKeys PASSED [ 81%]
10:46:40 test/integration/test_metadatastore.py::TestMetadataStore::testBasicUsage PASSED [ 81%]
10:46:40 test/integration/test_metadatastore.py::TestMetadataStore::testMetadataService PASSED [ 82%]
10:46:46 test/integration/test_model51.py::TestModel51::testExposureTime PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testPhysicalSize PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[YOTTAMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[ZETTAMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[EXAMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[PETAMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[TERAMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[GIGAMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[MEGAMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[KILOMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[HECTOMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[DECAMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[METER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[DECIMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[CENTIMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[MILLIMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[MICROMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[NANOMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[PICOMETER] PASSED [ 82%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[FEMTOMETER] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[ATTOMETER] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[ZEPTOMETER] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[YOCTOMETER] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[ANGSTROM] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[ASTRONOMICALUNIT] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[LIGHTYEAR] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[PARSEC] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[THOU] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[LINE] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[INCH] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[FOOT] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[YARD] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[MILE] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[POINT] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[PIXEL] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAllLengths[REFERENCEFRAME] PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testAsMapMethod PASSED [ 83%]
10:46:49 test/integration/test_model51.py::TestModel51::testMapEagerFetch PASSED [ 83%]
10:46:54 test/integration/test_model51.py::TestModel51::testMapSecurity PASSED [ 83%]
10:46:58 test/integration/test_model51.py::TestModel51::testUnitProjections PASSED [ 84%]
10:47:00 test/integration/test_permissions.py::TestPermissions::testLoginToPublicGroupTicket1940 PASSED [ 84%]
10:47:03 test/integration/test_permissions.py::TestPermissions::testLinkingInPrivateGroup PASSED [ 84%]
10:47:03 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePrivateGroup PASSED [ 84%]
10:47:03 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePublicGroupReadOnly PASSED [ 84%]
10:47:03 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePublicGroupReadAnnotate PASSED [ 84%]
10:47:03 test/integration/test_permissions.py::TestPermissions::testCreatAndUpdatePublicGroup PASSED [ 84%]
10:47:03 test/integration/test_permissions.py::TestPermissions::testCreatGroupAndchangePermissions PASSED [ 84%]
10:47:06 test/integration/test_permissions.py::TestPermissions::testGroupOwners PASSED [ 84%]
10:47:06 test/integration/test_permissions.py::TestPermissions::testSearchAllGroups PASSED [ 84%]
10:47:08 test/integration/test_permissions.py::TestPermissions::testOGContextParameter PASSED [ 84%]
10:47:11 test/integration/test_permissions.py::TestPermissions::testOGSetImplicitContext PASSED [ 84%]
10:47:13 test/integration/test_permissions.py::TestPermissions::testOGSetProxyContext PASSED [ 84%]
10:47:15 test/integration/test_permissions.py::TestPermissions::testOGSetSecurityContext PASSED [ 84%]
10:47:18 test/integration/test_permissions.py::TestPermissions::testOGArg PASSED [ 84%]
10:47:21 test/integration/test_permissions.py::TestPermissions::testSaveWithNegOneNotExplicit PASSED [ 84%]
10:47:25 test/integration/test_permissions.py::TestPermissions::testPrivateGroupCallContext PASSED [ 84%]
10:47:26 test/integration/test_permissions.py::TestPermissions::testAdminCanQueryWithGroupMinusOneTicket9632 PASSED [ 84%]
10:47:31 test/integration/test_permissions.py::TestPermissions::testOmeroUserAsAdmin PASSED [ 84%]
10:47:36 test/integration/test_permissions.py::TestPermissions::testOmeroUserAsNonAdmin PASSED [ 84%]
10:47:36 test/integration/test_permissions.py::TestPermissions::testImmutablePermissions PASSED [ 84%]
10:47:36 test/integration/test_permissions.py::TestPermissions::testDisallow PASSED [ 85%]
10:47:36 test/integration/test_permissions.py::TestPermissions::testClientSet PASSED [ 85%]
10:47:38 test/integration/test_permissions.py::TestPermissions::testAdminUseOfRawPixelsBean PASSED [ 85%]
10:47:41 test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadGroupMinusOne PASSED [ 85%]
10:47:43 test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadCorrectGroup PASSED [ 85%]
10:47:51 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----admin-admin] PASSED [ 85%]
10:47:56 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----admin-owner] PASSED [ 85%]
10:48:00 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----admin-member] PASSED [ 85%]
10:48:05 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----owner-admin] PASSED [ 85%]
10:48:10 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----owner-owner] PASSED [ 85%]
10:48:14 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----owner-member] PASSED [ 85%]
10:48:19 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----member-admin] PASSED [ 85%]
10:48:24 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----member-owner] PASSED [ 85%]
10:48:28 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rw-----member-member] PASSED [ 85%]
10:48:34 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----admin-admin] PASSED [ 85%]
10:48:38 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----admin-owner] PASSED [ 85%]
10:48:43 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----admin-member] PASSED [ 85%]
10:48:47 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----owner-admin] PASSED [ 85%]
10:48:53 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----owner-owner] PASSED [ 85%]
10:48:57 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----owner-member] PASSED [ 85%]
10:49:02 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----member-admin] PASSED [ 86%]
10:49:07 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----member-owner] PASSED [ 86%]
10:49:12 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwr----member-member] PASSED [ 86%]
10:49:16 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---admin-admin] PASSED [ 86%]
10:49:21 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---admin-owner] PASSED [ 86%]
10:49:25 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---admin-member] PASSED [ 86%]
10:49:31 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---owner-admin] PASSED [ 86%]
10:49:36 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---owner-owner] PASSED [ 86%]
10:49:40 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---owner-member] PASSED [ 86%]
10:49:45 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---member-admin] PASSED [ 86%]
10:49:50 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---member-owner] PASSED [ 86%]
10:49:55 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwra---member-member] PASSED [ 86%]
10:50:00 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---admin-admin] PASSED [ 86%]
10:50:04 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---admin-owner] PASSED [ 86%]
10:50:09 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---admin-member] PASSED [ 86%]
10:50:14 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---owner-admin] PASSED [ 86%]
10:50:18 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---owner-owner] PASSED [ 86%]
10:50:23 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---owner-member] PASSED [ 86%]
10:50:28 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---member-admin] PASSED [ 86%]
10:50:33 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---member-owner] PASSED [ 86%]
10:50:38 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissionsWorkaround[rwrw---member-member] PASSED [ 87%]
10:50:42 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----admin-admin] PASSED [ 87%]
10:50:47 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----admin-owner] PASSED [ 87%]
10:50:52 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----admin-member] PASSED [ 87%]
10:50:57 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----owner-admin] PASSED [ 87%]
10:51:02 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----owner-owner] PASSED [ 87%]
10:51:07 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----owner-member] PASSED [ 87%]
10:51:11 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----member-admin] PASSED [ 87%]
10:51:16 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----member-owner] PASSED [ 87%]
10:51:21 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rw-----member-member] PASSED [ 87%]
10:51:26 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----admin-admin] PASSED [ 87%]
10:51:30 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----admin-owner] PASSED [ 87%]
10:51:36 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----admin-member] PASSED [ 87%]
10:51:40 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----owner-admin] PASSED [ 87%]
10:51:45 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----owner-owner] PASSED [ 87%]
10:51:50 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----owner-member] PASSED [ 87%]
10:51:55 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----member-admin] PASSED [ 87%]
10:52:00 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----member-owner] PASSED [ 87%]
10:52:05 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwr----member-member] PASSED [ 87%]
10:52:09 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---admin-admin] PASSED [ 87%]
10:52:14 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---admin-owner] PASSED [ 88%]
10:52:19 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---admin-member] PASSED [ 88%]
10:52:24 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---owner-admin] PASSED [ 88%]
10:52:29 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---owner-owner] PASSED [ 88%]
10:52:33 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---owner-member] PASSED [ 88%]
10:52:39 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---member-admin] PASSED [ 88%]
10:52:44 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---member-owner] PASSED [ 88%]
10:52:48 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwra---member-member] PASSED [ 88%]
10:52:53 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---admin-admin] PASSED [ 88%]
10:52:58 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---admin-owner] PASSED [ 88%]
10:53:03 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---admin-member] PASSED [ 88%]
10:53:08 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---owner-admin] PASSED [ 88%]
10:53:13 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---owner-owner] PASSED [ 88%]
10:53:17 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---owner-member] PASSED [ 88%]
10:53:22 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---member-admin] PASSED [ 88%]
10:53:27 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---member-owner] PASSED [ 88%]
10:53:32 test/integration/test_permissions.py::TestPermissionProjections::testProjectionPermissions[rwrw---member-member] PASSED [ 88%]
10:53:32 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[PlateI] SKIPPED [ 88%]
10:53:32 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[WellI] SKIPPED [ 88%]
10:53:32 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[ImageI] SKIPPED [ 88%]
10:53:32 test/integration/test_permissions.py::TestPermissionProjections::testExtendedRestrictions[FileAnnotationI] SKIPPED [ 88%]
10:53:35 test/integration/test_pixelsService.py::TestPixelsService::test9655 PASSED [ 89%]
10:53:37 test/integration/test_rawfilestore.py::TestRFS::testNullSize11743 PASSED [ 89%]
10:53:37 test/integration/test_rawfilestore.py::TestRFS::testGetFileId PASSED [ 89%]
10:53:42 test/integration/test_rawpixelsstore.py::TestRPS::testTicket4737WithClose PASSED [ 89%]
10:53:45 test/integration/test_rawpixelsstore.py::TestRPS::testTicket4737WithSave PASSED [ 89%]
10:53:47 test/integration/test_rawpixelsstore.py::TestRPS::testTicket4737WithForEachTile PASSED [ 89%]
10:53:52 test/integration/test_rawpixelsstore.py::TestRPS::testBigPlane PASSED [ 89%]
10:54:05 test/integration/test_rawpixelsstore.py::TestRPS::testRomioToPyramid PASSED [ 89%]
10:54:18 test/integration/test_rawpixelsstore.py::TestRPS::test2RomioToPyramidWithNegOne PASSED [ 89%]
10:54:41 test/integration/test_rawpixelsstore.py::TestRPS::testPyramidConcurrentAccess PASSED [ 89%]
10:54:49 test/integration/test_rawpixelsstore.py::TestTiles::testTiles PASSED [ 89%]
10:54:57 test/integration/test_reimport.py::TestReimportArchivedFiles::testConvertSynthetic PASSED [ 89%]
10:55:00 test/integration/test_render.py::TestRendering::test_render_region PASSED [ 89%]
10:55:03 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::test_dir PASSED [ 89%]
10:55:03 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testCreate PASSED [ 89%]
10:55:03 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testWrite PASSED [ 89%]
10:55:03 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testFailedWrite PASSED [ 89%]
10:55:03 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testWriteRead PASSED [ 89%]
10:55:03 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testAppend PASSED [ 89%]
10:55:03 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testTruncateToZero PASSED [ 89%]
10:55:03 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testClose PASSED [ 90%]
10:55:03 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testImportLogFilenameSetting PASSED [ 90%]
10:55:06 test/integration/test_repository.py::TestRepository::test_dir PASSED [ 90%]
10:55:06 test/integration/test_repository.py::TestRepository::testBasicUsage PASSED [ 90%]
10:55:06 test/integration/test_repository.py::TestRepository::testSanityCheckRepos PASSED [ 90%]
10:55:06 test/integration/test_repository.py::TestRepository::testManagedRepoAsPubliRepo PASSED [ 90%]
10:55:09 test/integration/test_repository.py::TestFileExists::test_dir PASSED [ 90%]
10:55:09 test/integration/test_repository.py::TestFileExists::testFileExistsForDirectory PASSED [ 90%]
10:55:09 test/integration/test_repository.py::TestFileExists::testFileExistsForFile PASSED [ 90%]
10:55:12 test/integration/test_repository.py::TestManagedRepositoryMultiUser::test_dir PASSED [ 90%]
10:55:17 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testTopPrivateGroup PASSED [ 90%]
10:55:23 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testDirPrivateGroup PASSED [ 90%]
10:55:28 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testDirReadOnlyGroup PASSED [ 90%]
10:55:33 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testDirReadWriteGroup PASSED [ 90%]
10:55:39 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testDirReadAnnotateGroup PASSED [ 90%]
10:55:41 test/integration/test_repository.py::TestManagedRepositoryMultiUser::testMultiGroup PASSED [ 90%]
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11:08:37 ==================================== ERRORS ====================================
11:08:37 ______________ ERROR at setup of TestConnectionMethods.testClose _______________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a727ae460>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a727c7e80>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a79c5cca0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testClose>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a10700>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:27:45,655 INFO [ omero.gateway] (MainThread) created connection (uuid=7a84b1a3-f90c-4262-b4ae-c94d4dbd6457)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=7a84b1a3-f90c-4262-b4ae-c94d4dbd6457)
11:08:37 _________ ERROR at setup of TestConnectionMethods.testTopLevelObjects __________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a79c92520>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a79c92be0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a79c92f40>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testTopLevelObjects>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a10700>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:27:46,044 INFO [ omero.gateway] (MainThread) created connection (uuid=0e6ac4f9-e413-4478-9fc5-9e2912d3fa9c)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=0e6ac4f9-e413-4478-9fc5-9e2912d3fa9c)
11:08:37 ____________ ERROR at setup of TestFindObject.testFindExperimenter _____________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a7504c7f0>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a7504c8e0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a7504c2e0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg_tiny' for <Function testFindExperimenter>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79c29b20>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg_tiny(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:28:00,538 INFO [ omero.gateway] (MainThread) created connection (uuid=5a66fb99-7da3-4572-a9c7-4b3706cc25a0)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=5a66fb99-7da3-4572-a9c7-4b3706cc25a0)
11:08:37 ______________ ERROR at setup of TestGetObject.testGetAnnotations ______________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a88c5a940>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a88c5a820>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a5a447ee0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg_tiny' for <Function testGetAnnotations>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f09f0d857f0>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg_tiny(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:28:25,705 INFO [ omero.gateway] (MainThread) created connection (uuid=97b4eb23-f9c1-42e2-a41c-6474b276d4e7)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=97b4eb23-f9c1-42e2-a41c-6474b276d4e7)
11:08:37 _________________ ERROR at setup of TestGetObject.testGetImage _________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a5a42ee50>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a6d547e20>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a6d547820>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg_tiny' for <Function testGetImage>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f09f0d857f0>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg_tiny(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:28:26,000 INFO [ omero.gateway] (MainThread) created connection (uuid=06928e1d-94f7-4846-a368-68960ae7d57e)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=06928e1d-94f7-4846-a368-68960ae7d57e)
11:08:37 ______ ERROR at setup of TestGetObject.testGetImageLoadPixels[True-True] _______
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a6d526580>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a9a8c8af0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a9a8c8820>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[True-True]>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f09f0d857f0>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg_tiny(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:28:26,290 INFO [ omero.gateway] (MainThread) created connection (uuid=f8220178-f3d6-4dd5-8d1b-344cdb476a4b)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=f8220178-f3d6-4dd5-8d1b-344cdb476a4b)
11:08:37 ______ ERROR at setup of TestGetObject.testGetImageLoadPixels[True-False] ______
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a9a8a48e0>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a9a8a4bb0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a9a8a40a0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[True-False]>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f09f0d857f0>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg_tiny(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:28:26,584 INFO [ omero.gateway] (MainThread) created connection (uuid=2c73f299-6890-45aa-b296-bae54158c6ee)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=2c73f299-6890-45aa-b296-bae54158c6ee)
11:08:37 ______ ERROR at setup of TestGetObject.testGetImageLoadPixels[False-True] ______
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a5a43d9d0>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a5a43da00>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a5a43d0d0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[False-True]>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f09f0d857f0>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg_tiny(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:28:27,296 INFO [ omero.gateway] (MainThread) created connection (uuid=b7a6b946-b7c2-4107-bbba-ffbad4a69892)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=b7a6b946-b7c2-4107-bbba-ffbad4a69892)
11:08:37 _____ ERROR at setup of TestGetObject.testGetImageLoadPixels[False-False] ______
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a70373910>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0aa72314c0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0aa72318e0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg_tiny' for <Function testGetImageLoadPixels[False-False]>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f09f0d857f0>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg_tiny(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:28:27,591 INFO [ omero.gateway] (MainThread) created connection (uuid=5fd210b4-63f3-431a-814d-45ba47b968cb)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=5fd210b4-63f3-431a-814d-45ba47b968cb)
11:08:37 ________________ ERROR at setup of TestGetObject.testTraversal _________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a909558e0>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a90955eb0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a90955d30>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg_tiny' for <Function testTraversal>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f09f0d857f0>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg_tiny(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTinyTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:61:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:161: in getTinyTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'tinyimg', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c288730>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:28:27,908 INFO [ omero.gateway] (MainThread) created connection (uuid=987f5b4f-27b2-42e7-8696-c30412675f26)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=987f5b4f-27b2-42e7-8696-c30412675f26)
11:08:37 __________________ ERROR at setup of TestImage.testThumbnail ___________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a79d9ef70>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a9a510d60>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a9a510ca0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testThumbnail>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:28:59,854 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:37 2024-10-03 11:28:59,860 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:37 2024-10-03 11:28:59,899 INFO [ omero.gateway] (MainThread) created connection (uuid=2053c819-7262-48a8-91b5-ec0cbbf804d8)
11:08:37 2024-10-03 11:29:00,311 INFO [ omero.gateway] (MainThread) created connection (uuid=f1c946d8-6a29-4803-b309-f131b16f98ff)
11:08:37 2024-10-03 11:29:00,344 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:37 2024-10-03 11:29:00,380 INFO [ omero.gateway] (MainThread) created connection (uuid=119a7558-ad39-420b-a09c-58fcc4d505fd)
11:08:37 2024-10-03 11:29:00,416 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:37 2024-10-03 11:29:00,455 INFO [ omero.gateway] (MainThread) created connection (uuid=67122466-643b-45b4-a918-990c658e3abd)
11:08:37 2024-10-03 11:29:00,496 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:37 2024-10-03 11:29:00,533 INFO [ omero.gateway] (MainThread) created connection (uuid=245a3df8-7fff-46f5-9c77-0638c3f6b62c)
11:08:37 2024-10-03 11:29:00,574 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:37 2024-10-03 11:29:00,613 INFO [ omero.gateway] (MainThread) created connection (uuid=782cacee-ea23-4cc8-b50b-ead9e7c89464)
11:08:37 2024-10-03 11:29:00,653 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:37 2024-10-03 11:29:00,689 INFO [ omero.gateway] (MainThread) created connection (uuid=bca7653d-aa00-422d-b2a9-70678ca5743c)
11:08:37 2024-10-03 11:29:00,728 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:37 2024-10-03 11:29:00,767 INFO [ omero.gateway] (MainThread) created connection (uuid=5b5f3fba-c590-4408-b573-129fb4e76d1a)
11:08:37 2024-10-03 11:29:00,815 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:37 2024-10-03 11:29:00,852 INFO [ omero.gateway] (MainThread) created connection (uuid=957524c0-1971-45a1-b3ce-ac03d6d1354c)
11:08:37 2024-10-03 11:29:00,902 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:37 2024-10-03 11:29:00,939 INFO [ omero.gateway] (MainThread) created connection (uuid=a77b863b-28a7-4bd3-baad-c8b34f67e305)
11:08:37 2024-10-03 11:29:00,986 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:37 2024-10-03 11:29:00,990 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:37 2024-10-03 11:29:01,028 INFO [ omero.gateway] (MainThread) created connection (uuid=0eabff0f-a9ec-4d2d-a437-1487dc0769fe)
11:08:37 2024-10-03 11:29:01,098 INFO [ omero.gateway] (MainThread) created connection (uuid=da02e86d-2ecf-43a3-a776-89a80f3435e3)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:37 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=2053c819-7262-48a8-91b5-ec0cbbf804d8)
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=f1c946d8-6a29-4803-b309-f131b16f98ff)
11:08:37 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=119a7558-ad39-420b-a09c-58fcc4d505fd)
11:08:37 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=67122466-643b-45b4-a918-990c658e3abd)
11:08:37 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=245a3df8-7fff-46f5-9c77-0638c3f6b62c)
11:08:37 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=782cacee-ea23-4cc8-b50b-ead9e7c89464)
11:08:37 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=bca7653d-aa00-422d-b2a9-70678ca5743c)
11:08:37 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=5b5f3fba-c590-4408-b573-129fb4e76d1a)
11:08:37 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=957524c0-1971-45a1-b3ce-ac03d6d1354c)
11:08:37 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=a77b863b-28a7-4bd3-baad-c8b34f67e305)
11:08:37 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:37 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=0eabff0f-a9ec-4d2d-a437-1487dc0769fe)
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=da02e86d-2ecf-43a3-a776-89a80f3435e3)
11:08:37 _________________ ERROR at setup of TestImage.testThumbnailSet _________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a703273d0>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0aa6f3e250>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0aa6f3e1c0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testThumbnailSet>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:01,399 INFO [ omero.gateway] (MainThread) created connection (uuid=47ad6fd4-f3a4-4f52-b7df-d1854c6ce683)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=47ad6fd4-f3a4-4f52-b7df-d1854c6ce683)
11:08:37 _______________ ERROR at setup of TestImage.testRenderingModels ________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a83e2ba30>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a79da6490>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a79da6220>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testRenderingModels>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:01,713 INFO [ omero.gateway] (MainThread) created connection (uuid=2cf2b9e0-7dff-4bd6-8fdd-c6d055aa8847)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=2cf2b9e0-7dff-4bd6-8fdd-c6d055aa8847)
11:08:37 _________________ ERROR at setup of TestImage.testSplitChannel _________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a79dc0490>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a7033b2e0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a7033b5e0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testSplitChannel>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:02,009 INFO [ omero.gateway] (MainThread) created connection (uuid=68d2f78a-f975-4cc2-b3f3-8bdc3cb850d8)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=68d2f78a-f975-4cc2-b3f3-8bdc3cb850d8)
11:08:37 __________________ ERROR at setup of TestImage.testLinePlots ___________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a9f9a9d90>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a88e05ee0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a88e05490>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testLinePlots>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:02,312 INFO [ omero.gateway] (MainThread) created connection (uuid=49c33de6-c352-45d7-97c3-05309b3c74c7)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=49c33de6-c352-45d7-97c3-05309b3c74c7)
11:08:37 _________________ ERROR at setup of TestImage.testProjections __________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a70346f40>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a703465e0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a70346460>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testProjections>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:02,607 INFO [ omero.gateway] (MainThread) created connection (uuid=5981d8bc-cc11-48fa-8aeb-2a8722207c39)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=5981d8bc-cc11-48fa-8aeb-2a8722207c39)
11:08:37 __________________ ERROR at setup of TestImage.testProperties __________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a79da3670>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f09f2b0ad90>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f09f2b0a190>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testProperties>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:03,284 INFO [ omero.gateway] (MainThread) created connection (uuid=d64352e6-82fe-4d5e-955c-8eb24c324092)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=d64352e6-82fe-4d5e-955c-8eb24c324092)
11:08:37 ________________ ERROR at setup of TestImage.testPixelSizeUnits ________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a892b6790>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a8413a970>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a8413aa60>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testPixelSizeUnits>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:03,581 INFO [ omero.gateway] (MainThread) created connection (uuid=4d3036b4-3f6a-49e1-9a03-89d49b88a810)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=4d3036b4-3f6a-49e1-9a03-89d49b88a810)
11:08:37 ________________ ERROR at setup of TestImage.testUnitsGetValue _________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a7532d9a0>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a7532d8b0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a74e4c2e0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testUnitsGetValue>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:03,877 INFO [ omero.gateway] (MainThread) created connection (uuid=80374801-b296-49ef-ae0b-ec1c41a64eb9)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=80374801-b296-49ef-ae0b-ec1c41a64eb9)
11:08:37 ____________ ERROR at setup of TestImage.testChannelWavelengthUnits ____________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a79c911c0>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a6adaf040>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a6adaffd0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testChannelWavelengthUnits>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:04,175 INFO [ omero.gateway] (MainThread) created connection (uuid=44d6ecd1-68a6-4925-96bb-dc335f82d46a)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=44d6ecd1-68a6-4925-96bb-dc335f82d46a)
11:08:37 ______________ ERROR at setup of TestImage.testExposureTimeUnits _______________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a908df280>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a908df880>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a908df490>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testExposureTimeUnits>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:04,478 INFO [ omero.gateway] (MainThread) created connection (uuid=44aa22e7-fc43-4c19-83e9-21d7870b6e3a)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=44aa22e7-fc43-4c19-83e9-21d7870b6e3a)
11:08:37 __________________ ERROR at setup of TestImage.testShortname ___________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a6ff40790>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a83cec3d0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a83cece80>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testShortname>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:04,780 INFO [ omero.gateway] (MainThread) created connection (uuid=8192d810-c32e-403b-81bd-013cb34711f4)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=8192d810-c32e-403b-81bd-013cb34711f4)
11:08:37 __________________ ERROR at setup of TestImage.testImageDate ___________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a750d6670>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a6ad51af0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a6ad51d30>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testImageDate>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:05,074 INFO [ omero.gateway] (MainThread) created connection (uuid=9c1baddf-f17f-4944-8f8d-3950c1cd9c0c)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=9c1baddf-f17f-4944-8f8d-3950c1cd9c0c)
11:08:37 ________________ ERROR at setup of TestImage.testSimpleMarshal _________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a6ae51730>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a6ae51670>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a6ae51760>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testSimpleMarshal>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:05,370 INFO [ omero.gateway] (MainThread) created connection (uuid=a1949286-4dbf-441c-9769-b2b584b7c18c)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=a1949286-4dbf-441c-9769-b2b584b7c18c)
11:08:37 ____________________ ERROR at setup of TestImage.testExport ____________________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a70327760>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a8413f0a0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a79d804c0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testExport>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:05,669 INFO [ omero.gateway] (MainThread) created connection (uuid=48e0abc2-9246-4af3-9d64-56460e79cff8)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=48e0abc2-9246-4af3-9d64-56460e79cff8)
11:08:37 _______________ ERROR at setup of TestImage.testRenderJpegRegion _______________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a909a3790>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a8b6589a0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a58b00e50>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testRenderJpegRegion>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:05,964 INFO [ omero.gateway] (MainThread) created connection (uuid=413b6dc4-f7b7-4acf-b6a8-99c0e1289584)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=413b6dc4-f7b7-4acf-b6a8-99c0e1289584)
11:08:37 _________ ERROR at setup of TestImage.testRenderJpegRegion_resolution __________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a750f2100>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a74c0ceb0>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a72ba21c0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testRenderJpegRegion_resolution>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:06,259 INFO [ omero.gateway] (MainThread) created connection (uuid=1aac7a03-3c00-4611-9a38-c0f8fd102fe9)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=1aac7a03-3c00-4611-9a38-c0f8fd102fe9)
11:08:37 _____ ERROR at setup of TestImage.testRenderJpegRegion_invalid_resolution ______
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:37 return opener.open(url, data, timeout)
11:08:37 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:37 response = meth(req, response)
11:08:37 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:37 response = self.parent.error(
11:08:37 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:37 return self._call_chain(*args)
11:08:37 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:37 result = func(*args)
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:37 req = <urllib.request.Request object at 0x7f0a728e85e0>
11:08:37 fp = <http.client.HTTPResponse object at 0x7f0a75169940>, code = 403
11:08:37 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a75169be0>
11:08:37 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:37 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:37 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:37 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:37 During handling of the above exception, another exception occurred:
11:08:37 request = <SubRequest 'author_testimg' for <Function testRenderJpegRegion_invalid_resolution>>
11:08:37 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:37 @pytest.fixture(scope='function')
11:08:37 def author_testimg(request, gatewaywrapper):
11:08:37 """
11:08:37 logs in as Author and returns the test image, creating it first if needed.
11:08:37 """
11:08:37 gatewaywrapper.loginAsAuthor()
11:08:37 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:37 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:37 i = IMAGES[alias].create()
11:08:37 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:37 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:37 else:
11:08:37 # First try to download the image
11:08:37 try:
11:08:37 # print "Trying to get test image from " + TESTIMG_URL +
11:08:37 # self.filename
11:08:37 sys.stderr.write('<')
11:08:37 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:37 with open(fpath, 'wb') as fout:
11:08:37 fout.write(fin.read())
11:08:37 except urllib.error.HTTPError:
11:08:37 > raise IOError('No such file %s' % fpath)
11:08:37 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:37 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:37 ---------------------------- Captured stderr setup -----------------------------
11:08:37 2024-10-03 11:29:06,563 INFO [ omero.gateway] (MainThread) created connection (uuid=5715243c-b816-424f-9043-0ac5ab2e82b4)
11:08:37 I<
11:08:37 ------------------------------ Captured log setup ------------------------------
11:08:37 INFO omero.gateway:__init__.py:2243 created connection (uuid=5715243c-b816-424f-9043-0ac5ab2e82b4)
11:08:37 ______________ ERROR at setup of TestImage.testRenderBirdsEyeView ______________
11:08:37 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:37 def create(self):
11:08:37 if isinstance(self.dataset, str):
11:08:37 dataset = DATASETS[self.dataset]
11:08:37 project = PROJECTS[dataset.project]
11:08:37 client = USERS[project.owner].login()
11:08:37 dataset = dataset.get(client)
11:08:37 else:
11:08:37 dataset = self.dataset
11:08:37 client = dataset._conn
11:08:37 i = self.get(client, dataset)
11:08:37 if i is not None:
11:08:37 # print ".. -> image already exists: %s" % self.name
11:08:37 return i
11:08:37 # print ".. -> create new image: %s" % self.name
11:08:37 sys.stderr.write('I')
11:08:37 if self.filename is False:
11:08:37 UserEntry.setGroupForSession(
11:08:37 client, dataset.getDetails().getGroup().getName())
11:08:37 self._createWithoutPixels(client, dataset)
11:08:37 return self.get(client, dataset)
11:08:37 fpath = os.path.join(BASEPATH, self.filename)
11:08:37 if not os.path.exists(fpath):
11:08:37 if not os.path.exists(os.path.dirname(fpath)):
11:08:37 os.makedirs(os.path.dirname(fpath))
11:08:37 if self.filename.endswith('.fake'):
11:08:37 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a74c02610>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f09f2e20310>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a83cef550>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testRenderBirdsEyeView>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:07,166 INFO [ omero.gateway] (MainThread) created connection (uuid=69528823-e5b9-4d7b-bf56-257e6f0ab591)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=69528823-e5b9-4d7b-bf56-257e6f0ab591)
11:08:38 ___________ ERROR at setup of TestImage.testRenderBirdsEyeView_Size ____________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a728189a0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a72818eb0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a72818430>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testRenderBirdsEyeView_Size>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a72a70430>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:07,464 INFO [ omero.gateway] (MainThread) created connection (uuid=f45af158-a7fb-4e7e-ad62-4b9a27f31f85)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=f45af158-a7fb-4e7e-ad62-4b9a27f31f85)
11:08:38 _____________ ERROR at setup of TestPixels.testReuseRawPixelsStore _____________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a7245abb0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a9aa12ac0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0aa6edadf0>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testReuseRawPixelsStore>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a9a9f50a0>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:24,154 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:24,160 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:24,203 INFO [ omero.gateway] (MainThread) created connection (uuid=32cfe55e-4a07-43a5-96e6-9b160f6ac25a)
11:08:38 2024-10-03 11:29:24,616 INFO [ omero.gateway] (MainThread) created connection (uuid=28bb0a2e-0178-4cab-8e34-1cd8918ee136)
11:08:38 2024-10-03 11:29:24,650 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:24,685 INFO [ omero.gateway] (MainThread) created connection (uuid=c81bc9c0-f330-4636-b0f4-587c4e827903)
11:08:38 2024-10-03 11:29:24,718 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:24,753 INFO [ omero.gateway] (MainThread) created connection (uuid=e74ef049-d0ad-4711-ac61-c44524afd303)
11:08:38 2024-10-03 11:29:24,790 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:24,826 INFO [ omero.gateway] (MainThread) created connection (uuid=caf2907f-f3c3-475b-a3df-990e007f3d7a)
11:08:38 2024-10-03 11:29:24,866 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:24,902 INFO [ omero.gateway] (MainThread) created connection (uuid=21b68868-8817-4a35-9070-f64d2ae0bcb3)
11:08:38 2024-10-03 11:29:24,938 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:24,973 INFO [ omero.gateway] (MainThread) created connection (uuid=bff5b891-4aad-40ad-906d-1377484b54e9)
11:08:38 2024-10-03 11:29:25,009 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:25,043 INFO [ omero.gateway] (MainThread) created connection (uuid=fbb4c037-4c2a-47bf-85a6-e07ab2e0b928)
11:08:38 2024-10-03 11:29:25,086 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:25,121 INFO [ omero.gateway] (MainThread) created connection (uuid=d07ae530-2e47-47cb-9795-6cf75d45fcb6)
11:08:38 2024-10-03 11:29:25,168 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:25,205 INFO [ omero.gateway] (MainThread) created connection (uuid=9c752081-489b-4d6e-8cc0-e363cd0531ec)
11:08:38 2024-10-03 11:29:25,247 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:25,252 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:25,290 INFO [ omero.gateway] (MainThread) created connection (uuid=19c249c4-6d02-4641-a936-a92653a503cb)
11:08:38 2024-10-03 11:29:25,358 INFO [ omero.gateway] (MainThread) created connection (uuid=9342e6e3-9a6c-4fbe-ba20-707d37ddef19)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=32cfe55e-4a07-43a5-96e6-9b160f6ac25a)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=28bb0a2e-0178-4cab-8e34-1cd8918ee136)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=c81bc9c0-f330-4636-b0f4-587c4e827903)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=e74ef049-d0ad-4711-ac61-c44524afd303)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=caf2907f-f3c3-475b-a3df-990e007f3d7a)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=21b68868-8817-4a35-9070-f64d2ae0bcb3)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=bff5b891-4aad-40ad-906d-1377484b54e9)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=fbb4c037-4c2a-47bf-85a6-e07ab2e0b928)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=d07ae530-2e47-47cb-9795-6cf75d45fcb6)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=9c752081-489b-4d6e-8cc0-e363cd0531ec)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=19c249c4-6d02-4641-a936-a92653a503cb)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=9342e6e3-9a6c-4fbe-ba20-707d37ddef19)
11:08:38 __________________ ERROR at setup of TestPixels.testPlaneInfo __________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a9a9d32b0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a9a9fa910>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a9a9fa5e0>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testPlaneInfo>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a9a9f50a0>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:25,657 INFO [ omero.gateway] (MainThread) created connection (uuid=c25a7005-701d-45c0-9280-7646baf08384)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=c25a7005-701d-45c0-9280-7646baf08384)
11:08:38 _________________ ERROR at setup of TestPixels.testPixelsType __________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a9a9fae80>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a9a9f9f70>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a9a9f93a0>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testPixelsType>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a9a9f50a0>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:25,954 INFO [ omero.gateway] (MainThread) created connection (uuid=b04ac7a8-88c4-4c63-ac52-863be017e9e6)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=b04ac7a8-88c4-4c63-ac52-863be017e9e6)
11:08:38 ___________________ ERROR at setup of TestPixels.testGetTile ___________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a9a7c4e80>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a9a7c4850>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a9a7c49d0>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testGetTile>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a9a9f50a0>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:26,688 INFO [ omero.gateway] (MainThread) created connection (uuid=cf353a64-5a0b-4108-a7f8-78725743297b)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=cf353a64-5a0b-4108-a7f8-78725743297b)
11:08:38 __________________ ERROR at setup of TestPixels.testGetPlane ___________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a9f7fd6d0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a9f7fda30>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a79d9d760>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testGetPlane>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a9a9f50a0>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:26,991 INFO [ omero.gateway] (MainThread) created connection (uuid=ac508eec-fd9b-4523-85cb-61a73c67a52c)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=ac508eec-fd9b-4523-85cb-61a73c67a52c)
11:08:38 ________ ERROR at setup of TestPixels.testGetPlanesExceptionOnGetPlane _________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a7021c8e0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a7021cbe0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a9a9e2820>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testGetPlanesExceptionOnGetPlane>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a9a9f50a0>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:27,290 INFO [ omero.gateway] (MainThread) created connection (uuid=d6d5a4c3-fc48-4a2f-9421-db0726a09c1a)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=d6d5a4c3-fc48-4a2f-9421-db0726a09c1a)
11:08:38 __________ ERROR at setup of TestPixels.testGetPlanesExceptionOnClose __________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a9fafac10>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a9fafaee0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a72901d30>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testGetPlanesExceptionOnClose>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a9a9f50a0>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:27,586 INFO [ omero.gateway] (MainThread) created connection (uuid=001b05f0-bdd1-4d91-9f94-58cc3481dfa2)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=001b05f0-bdd1-4d91-9f94-58cc3481dfa2)
11:08:38 __________ ERROR at setup of TestPixels.testGetPlanesExceptionOnBoth ___________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a5aae1d60>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a5aae1df0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a5aae1bb0>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testGetPlanesExceptionOnBoth>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a9a9f50a0>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:27,882 INFO [ omero.gateway] (MainThread) created connection (uuid=3c6d3643-1445-4a1c-9262-e46d05039a1b)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=3c6d3643-1445-4a1c-9262-e46d05039a1b)
11:08:38 ________________ ERROR at setup of TestPixels.testGetHistogram _________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a727f04c0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a79f10640>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a79f10250>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testGetHistogram>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a9a9f50a0>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:28,181 INFO [ omero.gateway] (MainThread) created connection (uuid=910e1639-7d61-4952-b70a-ab63c4972b19)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=910e1639-7d61-4952-b70a-ab63c4972b19)
11:08:38 ___________________ ERROR at setup of TestRDefs.testDefault ____________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a909ad9a0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a88db9610>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a6d863eb0>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testDefault>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:31,380 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:31,386 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:31,422 INFO [ omero.gateway] (MainThread) created connection (uuid=5ceaf291-981a-47e3-9f9b-f7f4314807ca)
11:08:38 2024-10-03 11:29:31,841 INFO [ omero.gateway] (MainThread) created connection (uuid=977259e7-82d2-488d-b44e-077199e06dbb)
11:08:38 2024-10-03 11:29:31,875 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:31,911 INFO [ omero.gateway] (MainThread) created connection (uuid=388fec04-01a2-41b2-b886-ebffb0fe2adc)
11:08:38 2024-10-03 11:29:31,943 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:31,977 INFO [ omero.gateway] (MainThread) created connection (uuid=ef015533-af82-45ef-819c-5714bfa6ed31)
11:08:38 2024-10-03 11:29:32,013 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:32,050 INFO [ omero.gateway] (MainThread) created connection (uuid=6ebc3672-7a76-40c1-97b9-5977c70ac038)
11:08:38 2024-10-03 11:29:32,087 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:32,123 INFO [ omero.gateway] (MainThread) created connection (uuid=8c35467b-a82d-4e9a-aac1-fc06b3150836)
11:08:38 2024-10-03 11:29:32,160 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:32,195 INFO [ omero.gateway] (MainThread) created connection (uuid=8b85dbee-70e5-4ce6-9167-60f8c9febe1c)
11:08:38 2024-10-03 11:29:32,231 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:32,267 INFO [ omero.gateway] (MainThread) created connection (uuid=9f15f2c0-1795-48c6-a288-2fd281f3173b)
11:08:38 2024-10-03 11:29:32,309 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:32,345 INFO [ omero.gateway] (MainThread) created connection (uuid=a86328bf-f670-469a-acfd-1bbe4aba8576)
11:08:38 2024-10-03 11:29:32,391 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:32,427 INFO [ omero.gateway] (MainThread) created connection (uuid=802ab03d-a9fc-4806-8983-6f80139e28b2)
11:08:38 2024-10-03 11:29:32,471 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:32,474 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:29:32,512 INFO [ omero.gateway] (MainThread) created connection (uuid=e1d90b36-1cb6-4f52-83a9-9328d3af7057)
11:08:38 2024-10-03 11:29:32,580 INFO [ omero.gateway] (MainThread) created connection (uuid=ffe543ca-c7aa-4803-8514-2b2c4acf97a3)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=5ceaf291-981a-47e3-9f9b-f7f4314807ca)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=977259e7-82d2-488d-b44e-077199e06dbb)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=388fec04-01a2-41b2-b886-ebffb0fe2adc)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=ef015533-af82-45ef-819c-5714bfa6ed31)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=6ebc3672-7a76-40c1-97b9-5977c70ac038)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=8c35467b-a82d-4e9a-aac1-fc06b3150836)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=8b85dbee-70e5-4ce6-9167-60f8c9febe1c)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=9f15f2c0-1795-48c6-a288-2fd281f3173b)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=a86328bf-f670-469a-acfd-1bbe4aba8576)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=802ab03d-a9fc-4806-8983-6f80139e28b2)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=e1d90b36-1cb6-4f52-83a9-9328d3af7057)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=ffe543ca-c7aa-4803-8514-2b2c4acf97a3)
11:08:38 __________________ ERROR at setup of TestRDefs.testCustomized __________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a75102a60>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a8411fca0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a8411f370>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testCustomized>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:32,880 INFO [ omero.gateway] (MainThread) created connection (uuid=944ad399-dd4d-4f43-b26c-5394044fc1e3)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=944ad399-dd4d-4f43-b26c-5394044fc1e3)
11:08:38 ________________ ERROR at setup of TestRDefs.testChannelWindows ________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a750001f0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a90a92550>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a90a92910>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testChannelWindows>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:33,177 INFO [ omero.gateway] (MainThread) created connection (uuid=efdbc75c-36d6-4268-b660-c0f88d57c4a5)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=efdbc75c-36d6-4268-b660-c0f88d57c4a5)
11:08:38 ______________ ERROR at setup of TestRDefs.testFloatDefaultMinMax ______________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0aa6f5c9a0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0aa6f5cb50>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0aa6f5cc40>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testFloatDefaultMinMax>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:33,478 INFO [ omero.gateway] (MainThread) created connection (uuid=45479b69-294d-4cdf-85c3-002a04db1a22)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=45479b69-294d-4cdf-85c3-002a04db1a22)
11:08:38 _________________ ERROR at setup of TestRDefs.testEmissionWave _________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a74c0af70>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a88cbeaf0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a88cbe490>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testEmissionWave>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:33,781 INFO [ omero.gateway] (MainThread) created connection (uuid=e20c8951-9fda-4050-a54c-8b03c1694b71)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=e20c8951-9fda-4050-a54c-8b03c1694b71)
11:08:38 __________________ ERROR at setup of TestRDefs.testBatchCopy ___________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a9faf3760>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a9faf3520>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a90446670>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testBatchCopy>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:34,083 INFO [ omero.gateway] (MainThread) created connection (uuid=8463583d-54bc-485e-bddc-ba1405a69db4)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=8463583d-54bc-485e-bddc-ba1405a69db4)
11:08:38 ____________ ERROR at setup of TestRDefs.testGroupBasedPermissions _____________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a74fdcb20>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a74fdc5e0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a74fdc640>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testGroupBasedPermissions>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:34,746 INFO [ omero.gateway] (MainThread) created connection (uuid=718bd231-0b91-46be-8f5c-eeabf87084e4)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=718bd231-0b91-46be-8f5c-eeabf87084e4)
11:08:38 ___________________ ERROR at setup of TestRDefs.testGetRdefs ___________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a75259910>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a75259820>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a75259790>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testGetRdefs>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:35,048 INFO [ omero.gateway] (MainThread) created connection (uuid=ffc0819f-863c-4e27-b004-6d90ddf593d0)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=ffc0819f-863c-4e27-b004-6d90ddf593d0)
11:08:38 ________________ ERROR at setup of TestRDefs.testResetDefaults _________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a8b658100>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a8b658310>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a88cb8520>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testResetDefaults>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:35,354 INFO [ omero.gateway] (MainThread) created connection (uuid=6e42c3e0-bb78-4522-a730-5df6b4c2ef16)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=6e42c3e0-bb78-4522-a730-5df6b4c2ef16)
11:08:38 _____________ ERROR at setup of TestRDefs.testQuantizationSettings _____________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a72a04340>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a72a04310>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a727ef6a0>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testQuantizationSettings>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:35,653 INFO [ omero.gateway] (MainThread) created connection (uuid=99686f89-1248-4b6a-90ee-d107346bd6a6)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=99686f89-1248-4b6a-90ee-d107346bd6a6)
11:08:38 _________ ERROR at setup of TestRDefs.testQuantizationSettingsInvalid __________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a9f485ca0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f09f1f532b0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f09f1f53d00>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testQuantizationSettingsInvalid>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:35,951 INFO [ omero.gateway] (MainThread) created connection (uuid=d9f2ff9f-6590-4347-99a7-3934cc3f96a6)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=d9f2ff9f-6590-4347-99a7-3934cc3f96a6)
11:08:38 ___________ ERROR at setup of TestRDefs.testQuantizationSettingsBulk ___________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a6b1436a0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a6b143af0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a6b143fd0>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testQuantizationSettingsBulk>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:36,253 INFO [ omero.gateway] (MainThread) created connection (uuid=05dba13a-f4d3-44f7-928d-c87229070ec1)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=05dba13a-f4d3-44f7-928d-c87229070ec1)
11:08:38 _______________ ERROR at setup of TestRDefs.testGetChannelsNoRE ________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a72822c10>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a72822d00>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a72822070>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testGetChannelsNoRE>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:36,554 INFO [ omero.gateway] (MainThread) created connection (uuid=103d1126-ab94-4476-8280-05c26383ec02)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=103d1126-ab94-4476-8280-05c26383ec02)
11:08:38 ____________ ERROR at setup of TestRDefs.testSetActiveChannelsNoRE _____________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a9a94d3d0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a9a94ddc0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f09f2ea8ee0>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testSetActiveChannelsNoRE>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:36,865 INFO [ omero.gateway] (MainThread) created connection (uuid=1287bcf5-63e5-42a9-8407-f159c4bc66fc)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=1287bcf5-63e5-42a9-8407-f159c4bc66fc)
11:08:38 ___________ ERROR at setup of TestRDefs.testSetActiveChannelsWithRE ____________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a9f429580>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a9f429520>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a86993070>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testSetActiveChannelsWithRE>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:37,163 INFO [ omero.gateway] (MainThread) created connection (uuid=41719810-2362-48a1-8480-3f9c63b56e29)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=41719810-2362-48a1-8480-3f9c63b56e29)
11:08:38 ___ ERROR at setup of TestRDefs.test_set_active_channels_set_inactive[True] ____
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a79d9e550>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a79d9e8b0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a79d9e1f0>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function test_set_active_channels_set_inactive[True]>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:37,464 INFO [ omero.gateway] (MainThread) created connection (uuid=f15503d5-5f43-4afa-860e-da3cea2af27c)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=f15503d5-5f43-4afa-860e-da3cea2af27c)
11:08:38 ___ ERROR at setup of TestRDefs.test_set_active_channels_set_inactive[False] ___
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a727a4fa0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a9a7af040>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a9a7afe50>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function test_set_active_channels_set_inactive[False]>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:37,769 INFO [ omero.gateway] (MainThread) created connection (uuid=427a8f51-e0c7-4601-bf36-6d5b1c588226)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=427a8f51-e0c7-4601-bf36-6d5b1c588226)
11:08:38 ______________ ERROR at setup of TestRDefs.testUnregisterService _______________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a74be12b0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a74be12e0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a74be1460>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testUnregisterService>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:38,066 INFO [ omero.gateway] (MainThread) created connection (uuid=81e50866-550d-48e0-a341-a069b379c540)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=81e50866-550d-48e0-a341-a069b379c540)
11:08:38 _______________ ERROR at setup of TestRDefs.testRegisterService ________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a90a1cfa0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a727cd8e0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a5a9d5460>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testRegisterService>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:38,707 INFO [ omero.gateway] (MainThread) created connection (uuid=684c7a86-6037-4647-be50-20054acc6e30)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=684c7a86-6037-4647-be50-20054acc6e30)
11:08:38 ___________________ ERROR at setup of TestRDefs.testCloseRE ____________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a9f4293d0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a9f429520>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a88e0a550>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testCloseRE>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79dc0220>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:29:39,010 INFO [ omero.gateway] (MainThread) created connection (uuid=83708032-5015-430c-9fad-00fc043ac8c7)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=83708032-5015-430c-9fad-00fc043ac8c7)
11:08:38 _____________ ERROR at setup of TestWrapper.testAllObjectsWrapped ______________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a9a891dc0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a8b65b2e0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a8b65b370>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testAllObjectsWrapped>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79c06a30>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:31:20,955 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:20,960 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:20,996 INFO [ omero.gateway] (MainThread) created connection (uuid=f2329f4c-a7b3-4925-bc1e-09525b5ab50a)
11:08:38 2024-10-03 11:31:21,419 INFO [ omero.gateway] (MainThread) created connection (uuid=1680b36e-3972-4175-a6e3-4e33c8ca6ca1)
11:08:38 2024-10-03 11:31:21,454 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:21,489 INFO [ omero.gateway] (MainThread) created connection (uuid=e4e990dd-18f3-4328-8042-84cc30f0fb55)
11:08:38 2024-10-03 11:31:21,523 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:21,558 INFO [ omero.gateway] (MainThread) created connection (uuid=9a3326bf-9c99-4170-9a1a-154b3ac0bed6)
11:08:38 2024-10-03 11:31:21,597 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:21,658 INFO [ omero.gateway] (MainThread) created connection (uuid=7d9f5741-fc20-47ed-bf2e-a296b03242fb)
11:08:38 2024-10-03 11:31:21,699 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:21,735 INFO [ omero.gateway] (MainThread) created connection (uuid=4ff29927-030f-47c0-9a6e-9cf0074f2c27)
11:08:38 2024-10-03 11:31:21,773 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:21,811 INFO [ omero.gateway] (MainThread) created connection (uuid=f56478fb-5875-414e-a30e-6d4893f5e11d)
11:08:38 2024-10-03 11:31:21,849 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:21,886 INFO [ omero.gateway] (MainThread) created connection (uuid=97db6486-0a57-400e-82f1-cf5c40f0735b)
11:08:38 2024-10-03 11:31:21,934 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:21,971 INFO [ omero.gateway] (MainThread) created connection (uuid=4577f3aa-1b84-43ba-a8eb-f5e2cea79834)
11:08:38 2024-10-03 11:31:22,020 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:22,057 INFO [ omero.gateway] (MainThread) created connection (uuid=94c149b5-44fe-45d1-a9a3-6eea20ad4114)
11:08:38 2024-10-03 11:31:22,104 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:22,108 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:22,144 INFO [ omero.gateway] (MainThread) created connection (uuid=2d04fe9e-6b2e-469c-8db6-af7ab4a24311)
11:08:38 2024-10-03 11:31:22,215 INFO [ omero.gateway] (MainThread) created connection (uuid=bffc35fa-3474-4da6-b1f1-22425d79607c)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=f2329f4c-a7b3-4925-bc1e-09525b5ab50a)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=1680b36e-3972-4175-a6e3-4e33c8ca6ca1)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=e4e990dd-18f3-4328-8042-84cc30f0fb55)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=9a3326bf-9c99-4170-9a1a-154b3ac0bed6)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=7d9f5741-fc20-47ed-bf2e-a296b03242fb)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=4ff29927-030f-47c0-9a6e-9cf0074f2c27)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=f56478fb-5875-414e-a30e-6d4893f5e11d)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=97db6486-0a57-400e-82f1-cf5c40f0735b)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=4577f3aa-1b84-43ba-a8eb-f5e2cea79834)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=94c149b5-44fe-45d1-a9a3-6eea20ad4114)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=2d04fe9e-6b2e-469c-8db6-af7ab4a24311)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=bffc35fa-3474-4da6-b1f1-22425d79607c)
11:08:38 _______________ ERROR at setup of TestWrapper.testDatasetWrapper _______________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a9f786bb0>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a9f786310>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a9a86cb80>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testDatasetWrapper>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79c06a30>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:31:23,259 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:23,300 INFO [ omero.gateway] (MainThread) created connection (uuid=f981e6d0-2575-4b3f-9e15-f48866df0ec1)
11:08:38 2024-10-03 11:31:23,370 INFO [ omero.gateway] (MainThread) created connection (uuid=f7653274-2108-4b31-a4c9-5f1d736d758e)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=f981e6d0-2575-4b3f-9e15-f48866df0ec1)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=f7653274-2108-4b31-a4c9-5f1d736d758e)
11:08:38 _______________ ERROR at setup of TestWrapper.testDetailsWrapper _______________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a8b68b580>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f0a8b68b6a0>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a8b65c040>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 request = <SubRequest 'author_testimg' for <Function testDetailsWrapper>>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a79c06a30>
11:08:38 @pytest.fixture(scope='function')
11:08:38 def author_testimg(request, gatewaywrapper):
11:08:38 """
11:08:38 logs in as Author and returns the test image, creating it first if needed.
11:08:38 """
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > rv = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/pytest_fixtures.py:81:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ---------------------------- Captured stderr setup -----------------------------
11:08:38 2024-10-03 11:31:24,104 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:24,141 INFO [ omero.gateway] (MainThread) created connection (uuid=0ecc7aa7-477b-41b4-8439-5cc74216b90a)
11:08:38 2024-10-03 11:31:24,210 INFO [ omero.gateway] (MainThread) created connection (uuid=32547b8d-446c-4cca-8cdb-c535e4f4ed0d)
11:08:38 I<
11:08:38 ------------------------------ Captured log setup ------------------------------
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=0ecc7aa7-477b-41b4-8439-5cc74216b90a)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=32547b8d-446c-4cca-8cdb-c535e4f4ed0d)
11:08:38 =================================== FAILURES ===================================
11:08:38 ____________________ TestDownload.testOriginalFileTmpfile[] ____________________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5b616640>
11:08:38 prefix = ''
11:08:38 tmpdir = local('/tmp/pytest-of-omero/pytest-3/testOriginalFileTmpfile__0')
11:08:38 @pytest.mark.parametrize('prefix', ['', 'OriginalFile:'])
11:08:38 def testOriginalFileTmpfile(self, prefix, tmpdir):
11:08:38 ofile = self.create_original_file(b"test")
11:08:38 tmpfile = tmpdir.join('test')
11:08:38 self.args += ['%s%s' % (prefix, str(ofile.id.val)), str(tmpfile)]
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:90:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 _____________ TestDownload.testOriginalFileTmpfile[OriginalFile:] ______________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5b616550>
11:08:38 prefix = 'OriginalFile:'
11:08:38 tmpdir = local('/tmp/pytest-of-omero/pytest-3/testOriginalFileTmpfile_Origin0')
11:08:38 @pytest.mark.parametrize('prefix', ['', 'OriginalFile:'])
11:08:38 def testOriginalFileTmpfile(self, prefix, tmpdir):
11:08:38 ofile = self.create_original_file(b"test")
11:08:38 tmpfile = tmpdir.join('test')
11:08:38 self.args += ['%s%s' % (prefix, str(ofile.id.val)), str(tmpfile)]
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:90:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 ____________________ TestDownload.testOriginalFileStdout[] _____________________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5b616190>
11:08:38 prefix = '', capsys = <_pytest.capture.CaptureFixture object at 0x7f0ab1260310>
11:08:38 @pytest.mark.parametrize('prefix', ['', 'OriginalFile:'])
11:08:38 def testOriginalFileStdout(self, prefix, capsys):
11:08:38 ofile = self.create_original_file(b"test")
11:08:38 self.args += ['%s%s' % (prefix, str(ofile.id.val)), '-']
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:98:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 ______________ TestDownload.testOriginalFileStdout[OriginalFile:] ______________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5b6254f0>
11:08:38 prefix = 'OriginalFile:'
11:08:38 capsys = <_pytest.capture.CaptureFixture object at 0x7f0abd6360a0>
11:08:38 @pytest.mark.parametrize('prefix', ['', 'OriginalFile:'])
11:08:38 def testOriginalFileStdout(self, prefix, capsys):
11:08:38 ofile = self.create_original_file(b"test")
11:08:38 self.args += ['%s%s' % (prefix, str(ofile.id.val)), '-']
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:98:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 ________________ TestDownload.testOriginalFileMultipleGroups[] _________________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5b625bb0>
11:08:38 prefix = '', capsys = <_pytest.capture.CaptureFixture object at 0x7f0ab8736d60>
11:08:38 @pytest.mark.parametrize('prefix', ['', 'OriginalFile:'])
11:08:38 def testOriginalFileMultipleGroups(self, prefix, capsys):
11:08:38 user, group1, group2 = self.setup_user_and_two_groups()
11:08:38 client = self.new_client(user=user)
11:08:38 ofile = self.create_original_file(b"test")
11:08:38 self.set_context(client, group2.id.val)
11:08:38 self.args += ['%s%s' % (prefix, str(ofile.id.val)), '-']
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:109:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 __________ TestDownload.testOriginalFileMultipleGroups[OriginalFile:] __________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5b625af0>
11:08:38 prefix = 'OriginalFile:'
11:08:38 capsys = <_pytest.capture.CaptureFixture object at 0x7f0abdb77ac0>
11:08:38 @pytest.mark.parametrize('prefix', ['', 'OriginalFile:'])
11:08:38 def testOriginalFileMultipleGroups(self, prefix, capsys):
11:08:38 user, group1, group2 = self.setup_user_and_two_groups()
11:08:38 client = self.new_client(user=user)
11:08:38 ofile = self.create_original_file(b"test")
11:08:38 self.set_context(client, group2.id.val)
11:08:38 self.args += ['%s%s' % (prefix, str(ofile.id.val)), '-']
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:109:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 ____________________ TestDownload.testFileAnnotationTmpfile ____________________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5b625820>
11:08:38 tmpdir = local('/tmp/pytest-of-omero/pytest-3/testFileAnnotationTmpfile0')
11:08:38 def testFileAnnotationTmpfile(self, tmpdir):
11:08:38 ofile = self.create_original_file(b"test")
11:08:38 fa = omero.model.FileAnnotationI()
11:08:38 fa.setFile(ofile)
11:08:38 fa = self.update.saveAndReturnObject(fa)
11:08:38 tmpfile = tmpdir.join('test')
11:08:38 self.args += ['FileAnnotation:%s' % str(fa.id.val), str(tmpfile)]
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:131:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 ____________________ TestDownload.testFileAnnotationStdout _____________________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5bad2190>
11:08:38 capsys = <_pytest.capture.CaptureFixture object at 0x7f0abdb7e7f0>
11:08:38 def testFileAnnotationStdout(self, capsys):
11:08:38 ofile = self.create_original_file(b"test")
11:08:38 fa = omero.model.FileAnnotationI()
11:08:38 fa.setFile(ofile)
11:08:38 fa = self.update.saveAndReturnObject(fa)
11:08:38 self.args += ['FileAnnotation:%s' % str(fa.id.val), '-']
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:141:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 ________________ TestDownload.testFileAnnotationMultipleGroups _________________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5bad2850>
11:08:38 capsys = <_pytest.capture.CaptureFixture object at 0x7f0abaf1f6a0>
11:08:38 def testFileAnnotationMultipleGroups(self, capsys):
11:08:38 user, group1, group2 = self.setup_user_and_two_groups()
11:08:38 client = self.new_client(user=user)
11:08:38 ofile = self.create_original_file(b"test")
11:08:38 fa = omero.model.FileAnnotationI()
11:08:38 fa.setFile(ofile)
11:08:38 fa = self.update.saveAndReturnObject(fa)
11:08:38 self.set_context(client, group2.id.val)
11:08:38 self.args += ['FileAnnotation:%s' % str(fa.id.val), '-']
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:154:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 _____________________ TestDownload.testImageFileset[True] ______________________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5bad2580>
11:08:38 tmpdir = local('/tmp/pytest-of-omero/pytest-3/testImageFileset_True_0')
11:08:38 use_fileset = True
11:08:38 @pytest.mark.parametrize('use_fileset', [True, False])
11:08:38 def testImageFileset(self, tmpdir, use_fileset):
11:08:38 fake = create_path("test", "&sizeT=2&sizeZ=5&sizeC=3.fake")
11:08:38 with open(fake.abspath(), 'w+') as f:
11:08:38 bytes1 = f.read()
11:08:38 image_name = os.path.basename(f.name)
11:08:38 pix_ids = self.import_image(f.name)
11:08:38 pixels = self.query.get("Pixels", int(pix_ids[0]))
11:08:38 out_dir = tmpdir.join('test')
11:08:38 image_id = pixels.getImage().id.val
11:08:38 object = "Image:%s" % image_id
11:08:38 if use_fileset:
11:08:38 image = self.query.get("Image", image_id)
11:08:38 object = "Fileset:%s" % image.fileset.id.val
11:08:38 self.args += [object, str(out_dir)]
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:182:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 _____________________ TestDownload.testImageFileset[False] _____________________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5bad20a0>
11:08:38 tmpdir = local('/tmp/pytest-of-omero/pytest-3/testImageFileset_False_0')
11:08:38 use_fileset = False
11:08:38 @pytest.mark.parametrize('use_fileset', [True, False])
11:08:38 def testImageFileset(self, tmpdir, use_fileset):
11:08:38 fake = create_path("test", "&sizeT=2&sizeZ=5&sizeC=3.fake")
11:08:38 with open(fake.abspath(), 'w+') as f:
11:08:38 bytes1 = f.read()
11:08:38 image_name = os.path.basename(f.name)
11:08:38 pix_ids = self.import_image(f.name)
11:08:38 pixels = self.query.get("Pixels", int(pix_ids[0]))
11:08:38 out_dir = tmpdir.join('test')
11:08:38 image_id = pixels.getImage().id.val
11:08:38 object = "Image:%s" % image_id
11:08:38 if use_fileset:
11:08:38 image = self.query.get("Image", image_id)
11:08:38 object = "Fileset:%s" % image.fileset.id.val
11:08:38 self.args += [object, str(out_dir)]
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:182:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 __________________ TestDownload.testSingleImageWithCompanion ___________________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5b684070>
11:08:38 tmpdir = local('/tmp/pytest-of-omero/pytest-3/testSingleImageWithCompanion0')
11:08:38 def testSingleImageWithCompanion(self, tmpdir):
11:08:38 images = self.import_fake_file(with_companion=True)
11:08:38 image = images[0]
11:08:38 out_dir = tmpdir.join('test')
11:08:38 self.args += ["Image:%s" % image.id.val, str(out_dir)]
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:194:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 _____________________________ TestDownload.testMIF _____________________________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5b6847c0>
11:08:38 tmpdir = local('/tmp/pytest-of-omero/pytest-3/testMIF0')
11:08:38 def testMIF(self, tmpdir):
11:08:38 images = self.import_fake_file(2)
11:08:38 out_dir = tmpdir.join('test')
11:08:38 self.args += ["Image:%s" % images[0].id.val, str(out_dir)]
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:202:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 _____________________ TestDownload.testImageMultipleGroups _____________________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5b6842e0>
11:08:38 tmpdir = local('/tmp/pytest-of-omero/pytest-3/testImageMultipleGroups0')
11:08:38 def testImageMultipleGroups(self, tmpdir):
11:08:38 user, group1, group2 = self.setup_user_and_two_groups()
11:08:38 client = self.new_client(user=user)
11:08:38 fake = create_path("test", "&sizeT=2&sizeZ=5&sizeC=3.fake")
11:08:38 with open(fake.abspath(), 'w+') as f:
11:08:38 bytes1 = f.read()
11:08:38 image_name = os.path.basename(f.name)
11:08:38 pix_ids = self.import_image(f.name)
11:08:38 pixels = self.query.get("Pixels", int(pix_ids[0]))
11:08:38 out_dir = tmpdir.join('test')
11:08:38 self.set_context(client, group2.id.val)
11:08:38 self.args += ["Image:%s" % pixels.getImage().id.val, str(out_dir)]
11:08:38 > self.cli.invoke(self.args, strict=True)
11:08:38 test/integration/clitest/test_download.py:225:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 ________ TestDownload.testPolicyGlobalRestriction[+read,+write,+image] _________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5b704070>
11:08:38 tmpdir = local('/tmp/pytest-of-omero/pytest-3/testPolicyGlobalRestriction__r0')
11:08:38 fixture = <test.integration.clitest.test_download.TestDownload.PolicyFixture object at 0x7f0a5b62d790>
11:08:38 @pytest.mark.parametrize('fixture', POLICY_FIXTURES,
11:08:38 ids=[str(x) for x in POLICY_FIXTURES])
11:08:38 def testPolicyGlobalRestriction(self, tmpdir, fixture):
11:08:38 # Skip f this isn't a check for this particular
11:08:38 # config, then skip.
11:08:38 self.skip_if("omero.policy.binary_access", lambda x: x != fixture.cfg)
11:08:38 group = self.new_group(perms='rwr---')
11:08:38 > self.do_restrictions(fixture, tmpdir, group)
11:08:38 test/integration/clitest/test_download.py:286:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 test/integration/clitest/test_download.py:355: in do_restrictions
11:08:38 self.cli.invoke(self.args, strict=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 _________ TestDownload.testPolicyGroupRestriction[+read,+write,+image] _________
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5bae1910>
11:08:38 tmpdir = local('/tmp/pytest-of-omero/pytest-3/testPolicyGroupRestriction__re0')
11:08:38 fixture = <test.integration.clitest.test_download.TestDownload.PolicyFixture object at 0x7f0a5b62d790>
11:08:38 @pytest.mark.parametrize('fixture', POLICY_FIXTURES,
11:08:38 ids=[str(x) for x in POLICY_FIXTURES])
11:08:38 def testPolicyGroupRestriction(self, tmpdir, fixture):
11:08:38 parts = fixture.cfg.split(",")
11:08:38 config = [NV("omero.policy.binary_access", x) for x in parts]
11:08:38 group = self.new_group(perms='rwr---', config=config)
11:08:38 > self.do_restrictions(fixture, tmpdir, group)
11:08:38 test/integration/clitest/test_download.py:294:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 test/integration/clitest/test_download.py:355: in do_restrictions
11:08:38 self.cli.invoke(self.args, strict=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 _____ TestDownload.testPolicyGroupRestriction[-read,+write,+image,-plate] ______
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5bae1580>
11:08:38 tmpdir = local('/tmp/pytest-of-omero/pytest-3/testPolicyGroupRestriction__re2')
11:08:38 fixture = <test.integration.clitest.test_download.TestDownload.PolicyFixture object at 0x7f0a5b62db50>
11:08:38 @pytest.mark.parametrize('fixture', POLICY_FIXTURES,
11:08:38 ids=[str(x) for x in POLICY_FIXTURES])
11:08:38 def testPolicyGroupRestriction(self, tmpdir, fixture):
11:08:38 parts = fixture.cfg.split(",")
11:08:38 config = [NV("omero.policy.binary_access", x) for x in parts]
11:08:38 group = self.new_group(perms='rwr---', config=config)
11:08:38 > self.do_restrictions(fixture, tmpdir, group)
11:08:38 test/integration/clitest/test_download.py:294:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 test/integration/clitest/test_download.py:355: in do_restrictions
11:08:38 self.cli.invoke(self.args, strict=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 _____ TestDownload.testPolicyGroupRestriction[+read,+write,+image,-plate] ______
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5bae1490>
11:08:38 tmpdir = local('/tmp/pytest-of-omero/pytest-3/testPolicyGroupRestriction__re3')
11:08:38 fixture = <test.integration.clitest.test_download.TestDownload.PolicyFixture object at 0x7f0a5b62dbb0>
11:08:38 @pytest.mark.parametrize('fixture', POLICY_FIXTURES,
11:08:38 ids=[str(x) for x in POLICY_FIXTURES])
11:08:38 def testPolicyGroupRestriction(self, tmpdir, fixture):
11:08:38 parts = fixture.cfg.split(",")
11:08:38 config = [NV("omero.policy.binary_access", x) for x in parts]
11:08:38 group = self.new_group(perms='rwr---', config=config)
11:08:38 > self.do_restrictions(fixture, tmpdir, group)
11:08:38 test/integration/clitest/test_download.py:294:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 test/integration/clitest/test_download.py:355: in do_restrictions
11:08:38 self.cli.invoke(self.args, strict=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 _____ TestDownload.testPolicyGroupRestriction[+read,+write,+image,+plate] ______
11:08:38 self = <test.integration.clitest.test_download.TestDownload object at 0x7f0a5bae13d0>
11:08:38 tmpdir = local('/tmp/pytest-of-omero/pytest-3/testPolicyGroupRestriction__re4')
11:08:38 fixture = <test.integration.clitest.test_download.TestDownload.PolicyFixture object at 0x7f0a5b62dbe0>
11:08:38 @pytest.mark.parametrize('fixture', POLICY_FIXTURES,
11:08:38 ids=[str(x) for x in POLICY_FIXTURES])
11:08:38 def testPolicyGroupRestriction(self, tmpdir, fixture):
11:08:38 parts = fixture.cfg.split(",")
11:08:38 config = [NV("omero.policy.binary_access", x) for x in parts]
11:08:38 group = self.new_group(perms='rwr---', config=config)
11:08:38 > self.do_restrictions(fixture, tmpdir, group)
11:08:38 test/integration/clitest/test_download.py:294:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 test/integration/clitest/test_download.py:355: in do_restrictions
11:08:38 self.cli.invoke(self.args, strict=True)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:08:38 self.assertRC()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.cli.CLI object at 0x7f0ab1237eb0>
11:08:38 def assertRC(self):
11:08:38 if self.rv != 0:
11:08:38 > raise NonZeroReturnCode(self.rv, "assert failed")
11:08:38 E omero.cli.NonZeroReturnCode: assert failed
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 usage: /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download
11:08:38 [-h] [-C] [-s SERVER] [-p PORT] [-g GROUP] [-u USER] [-w PASSWORD]
11:08:38 [-k KEY] [--sudo ADMINUSER] [-q]
11:08:38 object filename insert_fileset_folder
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/bin/pytest download: error: too few arguments
11:08:38 _____________________________ TestUser.testSaveAs ______________________________
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 > fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:419:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 /usr/lib64/python3.9/urllib/request.py:214: in urlopen
11:08:38 return opener.open(url, data, timeout)
11:08:38 /usr/lib64/python3.9/urllib/request.py:523: in open
11:08:38 response = meth(req, response)
11:08:38 /usr/lib64/python3.9/urllib/request.py:632: in http_response
11:08:38 response = self.parent.error(
11:08:38 /usr/lib64/python3.9/urllib/request.py:561: in error
11:08:38 return self._call_chain(*args)
11:08:38 /usr/lib64/python3.9/urllib/request.py:494: in _call_chain
11:08:38 result = func(*args)
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <urllib.request.HTTPDefaultErrorHandler object at 0x7f0a79c5ccd0>
11:08:38 req = <urllib.request.Request object at 0x7f0a79e29e50>
11:08:38 fp = <http.client.HTTPResponse object at 0x7f09f3241130>, code = 403
11:08:38 msg = 'Forbidden', hdrs = <http.client.HTTPMessage object at 0x7f0a79f97fd0>
11:08:38 def http_error_default(self, req, fp, code, msg, hdrs):
11:08:38 > raise HTTPError(req.full_url, code, msg, hdrs, fp)
11:08:38 E urllib.error.HTTPError: HTTP Error 403: Forbidden
11:08:38 /usr/lib64/python3.9/urllib/request.py:641: HTTPError
11:08:38 During handling of the above exception, another exception occurred:
11:08:38 self = <test.integration.gatewaytest.test_user.TestUser object at 0x7f0a5b3b3b20>
11:08:38 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7f0a752a7400>
11:08:38 def testSaveAs(self, gatewaywrapper):
11:08:38 for u in (gatewaywrapper.AUTHOR, gatewaywrapper.ADMIN):
11:08:38 # Test image should be owned by author
11:08:38 gatewaywrapper.loginAsAuthor()
11:08:38 > image = gatewaywrapper.getTestImage(autocreate=True)
11:08:38 test/integration/gatewaytest/test_user.py:34:
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/testdb_create.py:150: in getTestImage
11:08:38 return dbhelpers.getImage(self.gateway, 'testimg1', forceds=dataset,
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:501: in getImage
11:08:38 i = IMAGES[alias].create()
11:08:38 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:08:38 self = <omero.gateway.scripts.dbhelpers.ImageEntry object at 0x7f0a5c6b72e0>
11:08:38 def create(self):
11:08:38 if isinstance(self.dataset, str):
11:08:38 dataset = DATASETS[self.dataset]
11:08:38 project = PROJECTS[dataset.project]
11:08:38 client = USERS[project.owner].login()
11:08:38 dataset = dataset.get(client)
11:08:38 else:
11:08:38 dataset = self.dataset
11:08:38 client = dataset._conn
11:08:38 i = self.get(client, dataset)
11:08:38 if i is not None:
11:08:38 # print ".. -> image already exists: %s" % self.name
11:08:38 return i
11:08:38 # print ".. -> create new image: %s" % self.name
11:08:38 sys.stderr.write('I')
11:08:38 if self.filename is False:
11:08:38 UserEntry.setGroupForSession(
11:08:38 client, dataset.getDetails().getGroup().getName())
11:08:38 self._createWithoutPixels(client, dataset)
11:08:38 return self.get(client, dataset)
11:08:38 fpath = os.path.join(BASEPATH, self.filename)
11:08:38 if not os.path.exists(fpath):
11:08:38 if not os.path.exists(os.path.dirname(fpath)):
11:08:38 os.makedirs(os.path.dirname(fpath))
11:08:38 if self.filename.endswith('.fake'):
11:08:38 # If it's a .fake file, simply create it
11:08:38 os.close(os.open(fpath, os.O_CREAT | os.O_EXCL))
11:08:38 else:
11:08:38 # First try to download the image
11:08:38 try:
11:08:38 # print "Trying to get test image from " + TESTIMG_URL +
11:08:38 # self.filename
11:08:38 sys.stderr.write('<')
11:08:38 fin = urllib.request.urlopen(TESTIMG_URL + self.filename)
11:08:38 with open(fpath, 'wb') as fout:
11:08:38 fout.write(fin.read())
11:08:38 except urllib.error.HTTPError:
11:08:38 > raise IOError('No such file %s' % fpath)
11:08:38 E OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/dbhelpers.py:423: OSError
11:08:38 ----------------------------- Captured stderr call -----------------------------
11:08:38 2024-10-03 11:31:08,019 INFO [ omero.gateway] (MainThread) closed connection (uuid=None)
11:08:38 2024-10-03 11:31:08,056 INFO [ omero.gateway] (MainThread) created connection (uuid=72b0415a-48ff-4af5-825d-21da92565987)
11:08:38 2024-10-03 11:31:08,128 INFO [ omero.gateway] (MainThread) created connection (uuid=47d24862-049a-4cba-9e9b-d95403291124)
11:08:38 I<
11:08:38 ------------------------------ Captured log call -------------------------------
11:08:38 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=72b0415a-48ff-4af5-825d-21da92565987)
11:08:38 INFO omero.gateway:__init__.py:2243 created connection (uuid=47d24862-049a-4cba-9e9b-d95403291124)
11:08:38 =============================== warnings summary ===============================
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
11:08:38 import sys, string, imp, os, threading, warnings, datetime
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
11:08:38 warnings.warn(
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
11:08:38 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
11:08:38 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
11:08:38 from pkg_resources import DistributionNotFound, get_distribution
11:08:38 OmeroPy/test/integration/clitest/test_admin.py::TestAdmin::test_checkupgrade1
11:08:38 OmeroPy/test/integration/clitest/test_admin.py::TestAdminRestrictedAdmin::test_checkupgrade1
11:08:38 OmeroPy/test/integration/test_util.py::TestUpgradeCheck::testReal
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/upgrade_check.py:149: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:08:38 self.log.warn("UPGRADE AVAILABLE:" + result)
11:08:38 OmeroPy/test/integration/clitest/test_admin.py: 2 warnings
11:08:38 OmeroPy/test/integration/clitest/test_chgrp.py: 116 warnings
11:08:38 OmeroPy/test/integration/clitest/test_chown.py: 76 warnings
11:08:38 OmeroPy/test/integration/clitest/test_cleanse.py: 7 warnings
11:08:38 OmeroPy/test/integration/clitest/test_delete.py: 81 warnings
11:08:38 OmeroPy/test/integration/clitest/test_duplicate.py: 18 warnings
11:08:38 OmeroPy/test/integration/clitest/test_fs.py: 26 warnings
11:08:38 OmeroPy/test/integration/clitest/test_group.py: 154 warnings
11:08:38 OmeroPy/test/integration/clitest/test_import.py: 189 warnings
11:08:38 OmeroPy/test/integration/clitest/test_import_bulk.py: 1 warning
11:08:38 OmeroPy/test/integration/clitest/test_ldap.py: 5 warnings
11:08:38 OmeroPy/test/integration/clitest/test_metadata.py: 10 warnings
11:08:38 OmeroPy/test/integration/clitest/test_obj.py: 56 warnings
11:08:38 OmeroPy/test/integration/clitest/test_pyramids.py: 10 warnings
11:08:38 OmeroPy/test/integration/clitest/test_script.py: 10 warnings
11:08:38 OmeroPy/test/integration/clitest/test_search.py: 16 warnings
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py: 121 warnings
11:08:38 OmeroPy/test/integration/clitest/test_tag.py: 57 warnings
11:08:38 OmeroPy/test/integration/clitest/test_upload.py: 6 warnings
11:08:38 OmeroPy/test/integration/clitest/test_user.py: 183 warnings
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/plugins/sessions.py:176: DeprecationWarning: OMERO_SESSION_DIR is deprecated. Use OMERO_SESSIONDIR instead.
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[1]
11:08:38 OmeroPy/test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[2]
11:08:38 OmeroPy/test/integration/clitest/test_delete.py::TestDelete::testInputWithElisionDefault[3]
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/cli.py:2105: DeprecationWarning:
11:08:38 Using '--dry-run'. Future versions will switch to '--force'. Explicitly set the parameter for portability
11:08:38 warnings.warn("\nUsing '--dry-run'.\
11:08:38 OmeroPy/test/integration/clitest/test_import.py::TestImport::testAutoClose
11:08:38 OmeroPy/test/integration/clitest/test_import.py::TestImport::testAutoClose
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/clients.py:1019: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:08:38 self.__logger.warn(
11:08:38 OmeroPy/test/integration/clitest/test_import_bulk.py::TestImportBulk::testBulk
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_import_bulk.py:131: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testBulk1') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_obj.py::TestObj::test_get_unit_and_value
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_model_PixelsI.py:37: DeprecationWarning: Pixels.relatedTo is deprecated
11:08:38 warnings.warn(item + " is deprecated", DeprecationWarning)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-True]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testLogin_None_True_0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[None-False]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testLogin_None_False_0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-True]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testLogin_300_True_0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLogin[300-False]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testLogin_300_False_0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rw----]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testLoginAs_rw_____0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwr---]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testLoginAs_rwr____0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwra--]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testLoginAs_rwra___0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginAs[rwrw--]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testLoginAs_rwrw___0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-True]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testLoginMultiGroup_True_True_0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[True-False]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testLoginMultiGroup_True_False0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-True]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testLoginMultiGroup_False_True0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testLoginMultiGroup[False-False]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testLoginMultiGroup_False_Fals0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testGroup
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testGroup0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testTimeout
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testTimeout0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testFile
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testFile0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testKey
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testKey0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testWho[user]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testWho_user_0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::testWho[root]
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/testWho_root_0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/test_open0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open_with_id
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/test_open_with_id0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_no_sudo
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/test_open_restricted_admin_no_0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_open_restricted_admin_sudo
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/test_open_restricted_admin_sud0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/clitest/test_sessions.py::TestSessions::test_close
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/clitest/test_sessions.py:36: PytestWarning: Value of environment variable OMERO_SESSIONDIR type should be str, but got local('/tmp/pytest-of-omero/pytest-3/test_close0') (type: LocalPath); converted to str implicitly
11:08:38 monkeypatch.setenv("OMERO_SESSIONDIR", tmpdir)
11:08:38 OmeroPy/test/integration/fstest/test_rename.py::TestRename::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/fstest/test_rename.py::TestRename::test_dir returned 'c61c9fdc-d18f-4669-8844-4c817a65dd74_3717/48c01a29-05b1-4224-948b-38e88419bf0f', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/gatewaytest/test_annotation.py: 4 warnings
11:08:38 OmeroPy/test/integration/gatewaytest/test_chmod.py: 28 warnings
11:08:38 OmeroPy/test/integration/gatewaytest/test_connection.py: 10 warnings
11:08:38 OmeroPy/test/integration/gatewaytest/test_get_objects.py: 3 warnings
11:08:38 OmeroPy/test/integration/gatewaytest/test_image_wrapper.py: 3 warnings
11:08:38 OmeroPy/test/integration/gatewaytest/test_user.py: 1 warning
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4810: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:08:38 logger.warn("%s on %s to <%s> %s(%r, %r)",
11:08:38 OmeroPy/test/integration/gatewaytest/test_annotation.py: 13 warnings
11:08:38 OmeroPy/test/integration/gatewaytest/test_chgrp.py: 4 warnings
11:08:38 OmeroPy/test/integration/gatewaytest/test_chmod.py: 3 warnings
11:08:38 OmeroPy/test/integration/gatewaytest/test_get_objects.py: 25 warnings
11:08:38 OmeroPy/test/integration/gatewaytest/test_missing_pyramid.py: 5 warnings
11:08:38 OmeroPy/test/integration/gatewaytest/test_services.py: 2 warnings
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:3824: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
11:08:38 convertedPlane = byteSwappedPlane.tostring()
11:08:38 OmeroPy/test/integration/gatewaytest/test_delete.py::TestDelete::testDeleteObjectDirect
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4381: DeprecationWarning: Deprecated. Use deleteObject() or deleteObjects()
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFiles
11:08:38 OmeroPy/test/integration/gatewaytest/test_fs.py::TestFileset::testGetArchivedFiles
11:08:38 OmeroPy/test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFiles
11:08:38 OmeroPy/test/integration/gatewaytest/test_fs.py::TestArchivedOriginalFiles::testGetArchivedFiles
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:10236: DeprecationWarning: Deprecated. Use getImportedImageFiles()
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwnerDeprecated
11:08:38 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsOwnerDeprecated
11:08:38 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMemberDeprecated
11:08:38 OmeroPy/test/integration/gatewaytest/test_get_objects.py::TestLeaderAndMemberOfGroup::testGroupSummaryAsMemberDeprecated
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:3048: DeprecationWarning: Deprecated. Use ExperimenterGroupWrapper.groupSummary()
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/gatewaytest/test_ticket10618.py: 24 warnings
11:08:38 OmeroPy/test/integration/scriptstest/test_roi_handling_utils.py: 1 warning
11:08:38 OmeroPy/test/integration/scriptstest/test_script_utils.py: 150 warnings
11:08:38 OmeroPy/test/integration/test_exporter.py: 1 warning
11:08:38 OmeroPy/test/integration/test_ishare.py: 3 warnings
11:08:38 OmeroPy/test/integration/test_librarytest.py: 31 warnings
11:08:38 OmeroPy/test/integration/test_permissions.py: 2 warnings
11:08:38 OmeroPy/test/integration/test_render.py: 1 warning
11:08:38 OmeroPy/test/integration/test_rois.py: 2 warnings
11:08:38 OmeroPy/test/integration/test_scripts.py: 1 warning
11:08:38 OmeroPy/test/integration/test_thumbnailPerms.py: 55 warnings
11:08:38 OmeroPy/test/integration/test_tickets1000.py: 1 warning
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1093: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
11:08:38 converted_plane = byte_swapped_plane.tostring()
11:08:38 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Screen2Plates]
11:08:38 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Screen2Plates]
11:08:38 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Screen2Plates]
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/populate_metadata.py:905: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:08:38 log.warn("PlateColumn is unimplemented")
11:08:38 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images1Missing]
11:08:38 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images1Missing]
11:08:38 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images1Missing]
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/populate_metadata.py:955: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:08:38 log.warn(
11:08:38 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[None-Dataset2Images1Missing]
11:08:38 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[1-Dataset2Images1Missing]
11:08:38 OmeroPy/test/integration/metadata/test_populate.py::TestPopulateMetadata::testPopulateMetadata[10-Dataset2Images1Missing]
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/populate_metadata.py:1389: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:08:38 log.warn("Invalid Id:%d found in row %s", row[n], row)
11:08:38 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testDefinition
11:08:38 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testDefinition
11:08:38 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testSimpleScript
11:08:38 OmeroPy/test/integration/scriptsharness/test_harness.py::TestScriptsViaOmeroCli::testSimpleScript
11:08:38 <string>:77: DeprecationWarning: This plugin is deprecated as of OMERO 5.5.0. Use the upload CLI plugin available from https://pypi.org/project/omero-upload/ instead.
11:08:38 OmeroPy/test/integration/scriptstest/test_coverage.py::TestCoverage::testUploadAndScript
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/scriptstest/test_coverage.py::TestCoverage::testUploadAndScript returned 4958, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-tiff]
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f0aed7b1a60>
11:08:38 Traceback (most recent call last):
11:08:38 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
11:08:38 self.close()
11:08:38 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
11:08:38 unlink(self.name)
11:08:38 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmps0ymya08.tiff'
11:08:38 warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
11:08:38 OmeroPy/test/integration/scriptstest/test_script_utils.py::TestScriptUtils::test_numpy_save_as_image[True-foo]
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <function _TemporaryFileCloser.__del__ at 0x7f0aed7b1a60>
11:08:38 Traceback (most recent call last):
11:08:38 File "/usr/lib64/python3.9/tempfile.py", line 461, in __del__
11:08:38 self.close()
11:08:38 File "/usr/lib64/python3.9/tempfile.py", line 457, in close
11:08:38 unlink(self.name)
11:08:38 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmph2vad2v4.foo'
11:08:38 warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
11:08:38 OmeroPy/test/integration/scriptstest/test_script_utils.py: 200 warnings
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1131: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
11:08:38 converted_row = row.tostring()
11:08:38 OmeroPy/test/integration/tablestest/test_backwards_compatibility.py: 12 warnings
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/tablestest/test_backwards_compatibility.py:84: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
11:08:38 return numpy.fromstring(x, count=len(x), dtype=tables.UInt8Atom())
11:08:38 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testBlankTable
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/tablestest/test_service.py::TestTables::testBlankTable returned object #0 (::omero::model::OriginalFile)
11:08:38 {
11:08:38 _id = object #1 (::omero::RLong)
11:08:38 {
11:08:38 _val = 5014
11:08:38 }
11:08:38 _details = object #2 (::omero::model::Details)
11:08:38 {
11:08:38 _owner = object #3 (::omero::model::Experimenter)
11:08:38 {
11:08:38 _id = object #4 (::omero::RLong)
11:08:38 {
11:08:38 _val = 3852
11:08:38 }
11:08:38 _details = object #5 (::omero::model::Details)
11:08:38 {
11:08:38 _owner = <nil>
11:08:38 _group = <nil>
11:08:38 _creationEvent = <nil>
11:08:38 _updateEvent = <nil>
11:08:38 _permissions = object #6 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 [0] = False
11:08:38 [1] = True
11:08:38 [2] = True
11:08:38 [3] = True
11:08:38 [4] = True
11:08:38 [5] = True
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 _externalInfo = <nil>
11:08:38 _call =
11:08:38 {
11:08:38 key = omero.client.uuid
11:08:38 value = 96f666a6-7211-47d5-b6ae-66509bddaef7
11:08:38 key = omero.session.uuid
11:08:38 value = 15f015b9-a083-43f1-b8c5-e93553fd556c
11:08:38 }
11:08:38 _event = object #7 (::omero::sys::EventContext)
11:08:38 {
11:08:38 shareId = -1
11:08:38 sessionId = 8777
11:08:38 sessionUuid = *********
11:08:38 userId = 3852
11:08:38 userName = 12ca546e-0784-46a3-a5f6-a2b979421d3d
11:08:38 sudoerId = <nil>
11:08:38 sudoerName = <nil>
11:08:38 groupId = 2829
11:08:38 groupName = 7f870c4d-01fe-4e32-86e7-3765a420fe6b
11:08:38 isAdmin = False
11:08:38 adminPrivileges =
11:08:38 {
11:08:38 }
11:08:38 eventId = 80873
11:08:38 eventType = User
11:08:38 memberOfGroups =
11:08:38 {
11:08:38 [0] = 2829
11:08:38 [1] = 1
11:08:38 }
11:08:38 leaderOfGroups =
11:08:38 {
11:08:38 }
11:08:38 groupPermissions = object #8 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 }
11:08:38 }
11:08:38 _loaded = True
11:08:38 _version = object #9 (::omero::RInt)
11:08:38 {
11:08:38 _val = 0
11:08:38 }
11:08:38 _groupExperimenterMapSeq =
11:08:38 {
11:08:38 }
11:08:38 _groupExperimenterMapLoaded = False
11:08:38 _omeName = object #10 (::omero::RString)
11:08:38 {
11:08:38 _val = 12ca546e-0784-46a3-a5f6-a2b979421d3d
11:08:38 }
11:08:38 _firstName = object #11 (::omero::RString)
11:08:38 {
11:08:38 _val = 12ca546e-0784-46a3-a5f6-a2b979421d3d
11:08:38 }
11:08:38 _middleName = <nil>
11:08:38 _lastName = object #12 (::omero::RString)
11:08:38 {
11:08:38 _val = 12ca546e-0784-46a3-a5f6-a2b979421d3d
11:08:38 }
11:08:38 _institution = <nil>
11:08:38 _ldap = object #13 (::omero::RBool)
11:08:38 {
11:08:38 _val = False
11:08:38 }
11:08:38 _email = object #14 (::omero::RString)
11:08:38 {
11:08:38 _val =
11:08:38 }
11:08:38 _config =
11:08:38 {
11:08:38 }
11:08:38 _annotationLinksSeq =
11:08:38 {
11:08:38 }
11:08:38 _annotationLinksLoaded = False
11:08:38 _annotationLinksCountPerOwner =
11:08:38 {
11:08:38 }
11:08:38 }
11:08:38 _group = object #15 (::omero::model::ExperimenterGroup)
11:08:38 {
11:08:38 _id = object #16 (::omero::RLong)
11:08:38 {
11:08:38 _val = 2829
11:08:38 }
11:08:38 _details = object #17 (::omero::model::Details)
11:08:38 {
11:08:38 _owner = <nil>
11:08:38 _group = <nil>
11:08:38 _creationEvent = <nil>
11:08:38 _updateEvent = <nil>
11:08:38 _permissions = object #18 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 [0] = False
11:08:38 [1] = True
11:08:38 [2] = True
11:08:38 [3] = True
11:08:38 [4] = True
11:08:38 [5] = True
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 _externalInfo = <nil>
11:08:38 _call =
11:08:38 {
11:08:38 key = omero.client.uuid
11:08:38 value = 96f666a6-7211-47d5-b6ae-66509bddaef7
11:08:38 key = omero.session.uuid
11:08:38 value = 15f015b9-a083-43f1-b8c5-e93553fd556c
11:08:38 }
11:08:38 _event = object #19 (::omero::sys::EventContext)
11:08:38 {
11:08:38 shareId = -1
11:08:38 sessionId = 8777
11:08:38 sessionUuid = *********
11:08:38 userId = 3852
11:08:38 userName = 12ca546e-0784-46a3-a5f6-a2b979421d3d
11:08:38 sudoerId = <nil>
11:08:38 sudoerName = <nil>
11:08:38 groupId = 2829
11:08:38 groupName = 7f870c4d-01fe-4e32-86e7-3765a420fe6b
11:08:38 isAdmin = False
11:08:38 adminPrivileges =
11:08:38 {
11:08:38 }
11:08:38 eventId = 80873
11:08:38 eventType = User
11:08:38 memberOfGroups =
11:08:38 {
11:08:38 [0] = 2829
11:08:38 [1] = 1
11:08:38 }
11:08:38 leaderOfGroups =
11:08:38 {
11:08:38 }
11:08:38 groupPermissions = object #20 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 }
11:08:38 }
11:08:38 _loaded = True
11:08:38 _version = <object #9>
11:08:38 _name = object #21 (::omero::RString)
11:08:38 {
11:08:38 _val = 7f870c4d-01fe-4e32-86e7-3765a420fe6b
11:08:38 }
11:08:38 _ldap = <object #13>
11:08:38 _groupExperimenterMapSeq =
11:08:38 {
11:08:38 }
11:08:38 _groupExperimenterMapLoaded = False
11:08:38 _config =
11:08:38 {
11:08:38 }
11:08:38 _annotationLinksSeq =
11:08:38 {
11:08:38 }
11:08:38 _annotationLinksLoaded = False
11:08:38 _annotationLinksCountPerOwner =
11:08:38 {
11:08:38 }
11:08:38 _description = <nil>
11:08:38 }
11:08:38 _creationEvent = object #22 (::omero::model::Event)
11:08:38 {
11:08:38 _id = object #23 (::omero::RLong)
11:08:38 {
11:08:38 _val = 80873
11:08:38 }
11:08:38 _details = object #24 (::omero::model::Details)
11:08:38 {
11:08:38 _owner = <nil>
11:08:38 _group = <nil>
11:08:38 _creationEvent = <nil>
11:08:38 _updateEvent = <nil>
11:08:38 _permissions = object #25 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 [0] = False
11:08:38 [1] = True
11:08:38 [2] = True
11:08:38 [3] = True
11:08:38 [4] = True
11:08:38 [5] = True
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 _externalInfo = <nil>
11:08:38 _call =
11:08:38 {
11:08:38 key = omero.client.uuid
11:08:38 value = 96f666a6-7211-47d5-b6ae-66509bddaef7
11:08:38 key = omero.session.uuid
11:08:38 value = 15f015b9-a083-43f1-b8c5-e93553fd556c
11:08:38 }
11:08:38 _event = object #26 (::omero::sys::EventContext)
11:08:38 {
11:08:38 shareId = -1
11:08:38 sessionId = 8777
11:08:38 sessionUuid = *********
11:08:38 userId = 3852
11:08:38 userName = 12ca546e-0784-46a3-a5f6-a2b979421d3d
11:08:38 sudoerId = <nil>
11:08:38 sudoerName = <nil>
11:08:38 groupId = 2829
11:08:38 groupName = 7f870c4d-01fe-4e32-86e7-3765a420fe6b
11:08:38 isAdmin = False
11:08:38 adminPrivileges =
11:08:38 {
11:08:38 }
11:08:38 eventId = 80873
11:08:38 eventType = User
11:08:38 memberOfGroups =
11:08:38 {
11:08:38 [0] = 2829
11:08:38 [1] = 1
11:08:38 }
11:08:38 leaderOfGroups =
11:08:38 {
11:08:38 }
11:08:38 groupPermissions = object #27 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 }
11:08:38 }
11:08:38 _loaded = True
11:08:38 _status = <nil>
11:08:38 _time = object #28 (::omero::RTime)
11:08:38 {
11:08:38 _val = 1727951813704
11:08:38 }
11:08:38 _experimenter = <object #3>
11:08:38 _experimenterGroup = <object #15>
11:08:38 _type = object #29 (::omero::model::EventType)
11:08:38 {
11:08:38 _id = object #30 (::omero::RLong)
11:08:38 {
11:08:38 _val = 4
11:08:38 }
11:08:38 _details = object #31 (::omero::model::Details)
11:08:38 {
11:08:38 _owner = <nil>
11:08:38 _group = <nil>
11:08:38 _creationEvent = <nil>
11:08:38 _updateEvent = <nil>
11:08:38 _permissions = object #32 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 [0] = False
11:08:38 [1] = True
11:08:38 [2] = True
11:08:38 [3] = False
11:08:38 [4] = True
11:08:38 [5] = True
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 _externalInfo = <nil>
11:08:38 _call =
11:08:38 {
11:08:38 key = omero.client.uuid
11:08:38 value = 96f666a6-7211-47d5-b6ae-66509bddaef7
11:08:38 key = omero.session.uuid
11:08:38 value = 15f015b9-a083-43f1-b8c5-e93553fd556c
11:08:38 }
11:08:38 _event = object #33 (::omero::sys::EventContext)
11:08:38 {
11:08:38 shareId = -1
11:08:38 sessionId = 8777
11:08:38 sessionUuid = *********
11:08:38 userId = 3852
11:08:38 userName = 12ca546e-0784-46a3-a5f6-a2b979421d3d
11:08:38 sudoerId = <nil>
11:08:38 sudoerName = <nil>
11:08:38 groupId = 2829
11:08:38 groupName = 7f870c4d-01fe-4e32-86e7-3765a420fe6b
11:08:38 isAdmin = False
11:08:38 adminPrivileges =
11:08:38 {
11:08:38 }
11:08:38 eventId = 80873
11:08:38 eventType = User
11:08:38 memberOfGroups =
11:08:38 {
11:08:38 [0] = 2829
11:08:38 [1] = 1
11:08:38 }
11:08:38 leaderOfGroups =
11:08:38 {
11:08:38 }
11:08:38 groupPermissions = object #34 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 }
11:08:38 }
11:08:38 _loaded = True
11:08:38 _value = object #35 (::omero::RString)
11:08:38 {
11:08:38 _val = User
11:08:38 }
11:08:38 }
11:08:38 _containingEvent = <nil>
11:08:38 _logsSeq =
11:08:38 {
11:08:38 }
11:08:38 _logsLoaded = True
11:08:38 _session = object #36 (::omero::model::Session)
11:08:38 {
11:08:38 _id = object #37 (::omero::RLong)
11:08:38 {
11:08:38 _val = 8777
11:08:38 }
11:08:38 _details = object #38 (::omero::model::Details)
11:08:38 {
11:08:38 _owner = <nil>
11:08:38 _group = <nil>
11:08:38 _creationEvent = <nil>
11:08:38 _updateEvent = <nil>
11:08:38 _permissions = object #39 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 [0] = False
11:08:38 [1] = True
11:08:38 [2] = True
11:08:38 [3] = False
11:08:38 [4] = True
11:08:38 [5] = True
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 _externalInfo = <nil>
11:08:38 _call =
11:08:38 {
11:08:38 key = omero.client.uuid
11:08:38 value = 96f666a6-7211-47d5-b6ae-66509bddaef7
11:08:38 key = omero.session.uuid
11:08:38 value = 15f015b9-a083-43f1-b8c5-e93553fd556c
11:08:38 }
11:08:38 _event = object #40 (::omero::sys::EventContext)
11:08:38 {
11:08:38 shareId = -1
11:08:38 sessionId = 8777
11:08:38 sessionUuid = *********
11:08:38 userId = 3852
11:08:38 userName = 12ca546e-0784-46a3-a5f6-a2b979421d3d
11:08:38 sudoerId = <nil>
11:08:38 sudoerName = <nil>
11:08:38 groupId = 2829
11:08:38 groupName = 7f870c4d-01fe-4e32-86e7-3765a420fe6b
11:08:38 isAdmin = False
11:08:38 adminPrivileges =
11:08:38 {
11:08:38 }
11:08:38 eventId = 80873
11:08:38 eventType = User
11:08:38 memberOfGroups =
11:08:38 {
11:08:38 [0] = 2829
11:08:38 [1] = 1
11:08:38 }
11:08:38 leaderOfGroups =
11:08:38 {
11:08:38 }
11:08:38 groupPermissions = object #41 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 }
11:08:38 }
11:08:38 _loaded = True
11:08:38 _version = <object #9>
11:08:38 _node = object #42 (::omero::model::Node)
11:08:38 {
11:08:38 _id = object #43 (::omero::RLong)
11:08:38 {
11:08:38 _val = 1
11:08:38 }
11:08:38 _details = <nil>
11:08:38 _loaded = False
11:08:38 _version = <nil>
11:08:38 _sessionsSeq =
11:08:38 {
11:08:38 }
11:08:38 _sessionsLoaded = False
11:08:38 _uuid = <nil>
11:08:38 _conn = <nil>
11:08:38 _up = <nil>
11:08:38 _down = <nil>
11:08:38 _scale = <nil>
11:08:38 _annotationLinksSeq =
11:08:38 {
11:08:38 }
11:08:38 _annotationLinksLoaded = False
11:08:38 _annotationLinksCountPerOwner =
11:08:38 {
11:08:38 }
11:08:38 }
11:08:38 _uuid = object #44 (::omero::RString)
11:08:38 {
11:08:38 _val = ********
11:08:38 }
11:08:38 _owner = <object #3>
11:08:38 _sudoer = <nil>
11:08:38 _timeToIdle = object #45 (::omero::RLong)
11:08:38 {
11:08:38 _val = 600000
11:08:38 }
11:08:38 _timeToLive = object #46 (::omero::RLong)
11:08:38 {
11:08:38 _val = 0
11:08:38 }
11:08:38 _started = object #47 (::omero::RTime)
11:08:38 {
11:08:38 _val = 1727951813668
11:08:38 }
11:08:38 _closed = <nil>
11:08:38 _message = object #48 (::omero::RString)
11:08:38 {
11:08:38 _val = Initial message.
11:08:38 }
11:08:38 _defaultEventType = object #49 (::omero::RString)
11:08:38 {
11:08:38 _val = User
11:08:38 }
11:08:38 _userAgent = object #50 (::omero::RString)
11:08:38 {
11:08:38 _val = OMERO.py.test
11:08:38 }
11:08:38 _userIP = <nil>
11:08:38 _eventsSeq =
11:08:38 {
11:08:38 }
11:08:38 _eventsLoaded = False
11:08:38 _annotationLinksSeq =
11:08:38 {
11:08:38 }
11:08:38 _annotationLinksLoaded = True
11:08:38 _annotationLinksCountPerOwner =
11:08:38 {
11:08:38 }
11:08:38 }
11:08:38 }
11:08:38 _updateEvent = <object #22>
11:08:38 _permissions = object #51 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 [0] = False
11:08:38 [1] = False
11:08:38 [2] = False
11:08:38 [3] = False
11:08:38 [4] = False
11:08:38 [5] = True
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 _externalInfo = <nil>
11:08:38 _call =
11:08:38 {
11:08:38 key = omero.client.uuid
11:08:38 value = 96f666a6-7211-47d5-b6ae-66509bddaef7
11:08:38 key = omero.session.uuid
11:08:38 value = 15f015b9-a083-43f1-b8c5-e93553fd556c
11:08:38 }
11:08:38 _event = object #52 (::omero::sys::EventContext)
11:08:38 {
11:08:38 shareId = -1
11:08:38 sessionId = 8777
11:08:38 sessionUuid = *********
11:08:38 userId = 3852
11:08:38 userName = 12ca546e-0784-46a3-a5f6-a2b979421d3d
11:08:38 sudoerId = <nil>
11:08:38 sudoerName = <nil>
11:08:38 groupId = 2829
11:08:38 groupName = 7f870c4d-01fe-4e32-86e7-3765a420fe6b
11:08:38 isAdmin = False
11:08:38 adminPrivileges =
11:08:38 {
11:08:38 }
11:08:38 eventId = 80873
11:08:38 eventType = User
11:08:38 memberOfGroups =
11:08:38 {
11:08:38 [0] = 2829
11:08:38 [1] = 1
11:08:38 }
11:08:38 leaderOfGroups =
11:08:38 {
11:08:38 }
11:08:38 groupPermissions = object #53 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 }
11:08:38 }
11:08:38 _loaded = True
11:08:38 _version = <nil>
11:08:38 _pixelsFileMapsSeq =
11:08:38 {
11:08:38 }
11:08:38 _pixelsFileMapsLoaded = True
11:08:38 _pixelsFileMapsCountPerOwner =
11:08:38 {
11:08:38 }
11:08:38 _path = object #54 (::omero::RString)
11:08:38 {
11:08:38 _val = /test
11:08:38 }
11:08:38 _repo = <nil>
11:08:38 _size = <nil>
11:08:38 _atime = object #55 (::omero::RTime)
11:08:38 {
11:08:38 _val = 1727951813703
11:08:38 }
11:08:38 _mtime = object #56 (::omero::RTime)
11:08:38 {
11:08:38 _val = 1727951813703
11:08:38 }
11:08:38 _ctime = object #57 (::omero::RTime)
11:08:38 {
11:08:38 _val = 1727951813703
11:08:38 }
11:08:38 _hasher = <nil>
11:08:38 _hash = <nil>
11:08:38 _mimetype = object #58 (::omero::RString)
11:08:38 {
11:08:38 _val = OMERO.tables
11:08:38 }
11:08:38 _filesetEntriesSeq =
11:08:38 {
11:08:38 }
11:08:38 _filesetEntriesLoaded = True
11:08:38 _annotationLinksSeq =
11:08:38 {
11:08:38 }
11:08:38 _annotationLinksLoaded = True
11:08:38 _annotationLinksCountPerOwner =
11:08:38 {
11:08:38 }
11:08:38 _name = object #59 (::omero::RString)
11:08:38 {
11:08:38 _val = /test
11:08:38 }
11:08:38 }, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testMask
11:08:38 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testMask
11:08:38 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
11:08:38 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
11:08:38 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
11:08:38 OmeroPy/test/integration/tablestest/test_service.py::TestTables::testAllColumnsSameTable
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/tablestest/test_service.py:54: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
11:08:38 return numpy.fromstring(x, count=len(x), dtype=tables.UInt8Atom())
11:08:38 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
11:08:38 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
11:08:38 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
11:08:38 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
11:08:38 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
11:08:38 OmeroPy/test/integration/tablestest/test_tables.py::TestTableIntegrity::testAllColumnsAndMetadata
11:08:38 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/test/integration/tablestest/test_tables.py:55: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
11:08:38 return numpy.fromstring(x, count=len(x), dtype=tables.UInt8Atom())
11:08:38 OmeroPy/test/integration/test_isession.py::TestISession::testJoinSession_Helper
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_isession.py::TestISession::testJoinSession_Helper returned '02a99fbb-b9f0-436c-a6d9-6a04e28fd60a', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_isession.py::TestISession::testSessionWithIP[127.0.0.1]
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_model_SessionI.py:37: DeprecationWarning: Session.userIP is deprecated
11:08:38 warnings.warn(item + " is deprecated", DeprecationWarning)
11:08:38 OmeroPy/test/integration/test_ishare.py::TestIShare::test1201
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_ishare.py::TestIShare::test1201 returned (<omero.clients.BaseClient object at 0x7f0a7a176490>, 8992, 1727952371979), which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_ishare.py::TestIShare::test_OS_regular_user
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_ishare.py::TestIShare::test_OS_regular_user returned (object #0 (::omero::model::Image)
11:08:38 {
11:08:38 _id = object #1 (::omero::RLong)
11:08:38 {
11:08:38 _val = 6292
11:08:38 }
11:08:38 _details = <nil>
11:08:38 _loaded = False
11:08:38 _version = <nil>
11:08:38 _series = <nil>
11:08:38 _acquisitionDate = <nil>
11:08:38 _archived = <nil>
11:08:38 _partial = <nil>
11:08:38 _format = <nil>
11:08:38 _imagingEnvironment = <nil>
11:08:38 _objectiveSettings = <nil>
11:08:38 _instrument = <nil>
11:08:38 _stageLabel = <nil>
11:08:38 _experiment = <nil>
11:08:38 _pixelsSeq = {}
11:08:38 _pixelsLoaded = False
11:08:38 _wellSamplesSeq = {}
11:08:38 _wellSamplesLoaded = False
11:08:38 _roisSeq = {}
11:08:38 _roisLoaded = False
11:08:38 _datasetLinksSeq = {}
11:08:38 _datasetLinksLoaded = False
11:08:38 _datasetLinksCountPerOwner =
11:08:38 {
11:08:38 }
11:08:38 _folderLinksSeq = {}
11:08:38 _folderLinksLoaded = False
11:08:38 _folderLinksCountPerOwner =
11:08:38 {
11:08:38 }
11:08:38 _fileset = <nil>
11:08:38 _annotationLinksSeq = {}
11:08:38 _annotationLinksLoaded = False
11:08:38 _annotationLinksCountPerOwner =
11:08:38 {
11:08:38 }
11:08:38 _name = <nil>
11:08:38 _description = <nil>
11:08:38 }, 9027), which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_reporawfilestore.py::TestRepoRawFileStore::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_reporawfilestore.py::TestRepoRawFileStore::test_dir returned '50ec4eac-69a1-470b-8347-6440231ccb38_4200/69040603-21fc-4aaf-a8aa-df03e223161c', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_repository.py::TestRepository::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestRepository::test_dir returned 'c2c3df65-28c9-42ec-82a3-f94894a93755_4201/beb8a25a-1902-4d26-bf25-1fce606c681a', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_repository.py::TestFileExists::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestFileExists::test_dir returned 'd0a8403d-3067-49d4-ad50-773d1a7e2216_4202/57435f1a-565b-42c5-956a-2c7b36b25df9', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_repository.py::TestManagedRepositoryMultiUser::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestManagedRepositoryMultiUser::test_dir returned '4a69e67e-d6c7-457e-bac3-941d84803eab_4203/743d8896-caca-4a8e-97db-51213b6f15fa', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_repository.py::TestPythonImporter::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestPythonImporter::test_dir returned 'e0173a76-b6b0-479f-917a-be73dc3d4f38_4215/98cdb393-6bfa-44bd-a24f-feaec47474bb', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_repository.py::TestRawAccess::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestRawAccess::test_dir returned '0f445a2a-503d-46d1-a101-ad59c6e251fc_4220/a859999e-01d2-4a9e-9c33-3112fa67c215', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_repository.py::TestDbSync::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestDbSync::test_dir returned 'eec1f5dc-3ae7-43ef-be17-ea361e70b7ab_4221/563c1d7a-4b0d-468c-9bca-a29d58194dea', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_repository.py::TestRecursiveDelete::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestRecursiveDelete::test_dir returned '499ab185-89fe-4b01-9909-6c5c3913a9a3_4222/0eed961f-18d5-43c5-b9ee-a009f2e7ebd9', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_repository.py::TestDeleteLog::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestDeleteLog::test_dir returned '62cd8844-1d48-4902-8883-836a86f4222f_4223/f8d54400-885c-4870-9988-679d194f8907', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_repository.py::TestUserTemplate::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestUserTemplate::test_dir returned '3776e2bd-87c1-45ed-abe1-be7145312985_4224/2685c4fb-fb16-4853-9aab-fa426511e4d6', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_repository.py::TestFilesetQueries::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestFilesetQueries::test_dir returned 'ac8d536b-6244-491a-b7dd-bf04610fdd37_4225/055afd59-0025-483b-a32c-ed52a184cdeb', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_repository.py::TestOriginalMetadata::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestOriginalMetadata::test_dir returned '7eb295e8-67c9-418d-8e1c-aadb33b9f7d4_4226/2caca35d-e987-4120-80b6-8a45027078aa', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_repository.py::TestDeletePerformance::test_dir
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_repository.py::TestDeletePerformance::test_dir returned 'bc18fe94-f486-4d0a-9709-8ddb46897f8f_4228/37c301c6-1e4e-4297-bc90-2a52fe97f7b9', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_scripts.py::TestScripts::testBasicUsage
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_scripts.py::TestScripts::testBasicUsage returned 9aca36b0-3cd6-45e9-8794-7faa3a7f60d8/a5d5c7ac-ca7d-4f5f-afe4-e51cec3afcb8omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_scripts.py::TestScripts::testUpload2562
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but OmeroPy/test/integration/test_scripts.py::TestScripts::testUpload2562 returned (123a35c1-d80a-4a31-8a06-71a857e0d99b/21484f55-9a4a-4bfa-8315-f33547e6dddfomero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000, object #0 (::omero::model::OriginalFile)
11:08:38 {
11:08:38 _id = object #1 (::omero::RLong)
11:08:38 {
11:08:38 _val = 5702
11:08:38 }
11:08:38 _details = object #2 (::omero::model::Details)
11:08:38 {
11:08:38 _owner = object #3 (::omero::model::Experimenter)
11:08:38 {
11:08:38 _id = object #4 (::omero::RLong)
11:08:38 {
11:08:38 _val = 0
11:08:38 }
11:08:38 _details = <nil>
11:08:38 _loaded = False
11:08:38 _version = <nil>
11:08:38 _groupExperimenterMapSeq =
11:08:38 {
11:08:38 }
11:08:38 _groupExperimenterMapLoaded = False
11:08:38 _omeName = <nil>
11:08:38 _firstName = <nil>
11:08:38 _middleName = <nil>
11:08:38 _lastName = <nil>
11:08:38 _institution = <nil>
11:08:38 _ldap = <nil>
11:08:38 _email = <nil>
11:08:38 _config =
11:08:38 {
11:08:38 }
11:08:38 _annotationLinksSeq =
11:08:38 {
11:08:38 }
11:08:38 _annotationLinksLoaded = False
11:08:38 _annotationLinksCountPerOwner =
11:08:38 {
11:08:38 }
11:08:38 }
11:08:38 _group = object #5 (::omero::model::ExperimenterGroup)
11:08:38 {
11:08:38 _id = object #6 (::omero::RLong)
11:08:38 {
11:08:38 _val = 1
11:08:38 }
11:08:38 _details = object #7 (::omero::model::Details)
11:08:38 {
11:08:38 _owner = <nil>
11:08:38 _group = <nil>
11:08:38 _creationEvent = <nil>
11:08:38 _updateEvent = <nil>
11:08:38 _permissions = object #8 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 [0] = False
11:08:38 [1] = True
11:08:38 [2] = True
11:08:38 [3] = False
11:08:38 [4] = True
11:08:38 [5] = True
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -52
11:08:38 }
11:08:38 _externalInfo = <nil>
11:08:38 _call =
11:08:38 {
11:08:38 key = omero.client.uuid
11:08:38 value = a5d5c7ac-ca7d-4f5f-afe4-e51cec3afcb8
11:08:38 key = omero.session.uuid
11:08:38 value = 9aca36b0-3cd6-45e9-8794-7faa3a7f60d8
11:08:38 }
11:08:38 _event = object #9 (::omero::sys::EventContext)
11:08:38 {
11:08:38 shareId = -1
11:08:38 sessionId = 9295
11:08:38 sessionUuid = *********
11:08:38 userId = 4235
11:08:38 userName = ae4063c5-a814-47aa-89ff-7202fce58921
11:08:38 sudoerId = <nil>
11:08:38 sudoerName = <nil>
11:08:38 groupId = 3153
11:08:38 groupName = 80823002-8dc0-4a31-ba0a-338d9ecbcb93
11:08:38 isAdmin = False
11:08:38 adminPrivileges =
11:08:38 {
11:08:38 }
11:08:38 eventId = -1
11:08:38 eventType = User
11:08:38 memberOfGroups =
11:08:38 {
11:08:38 [0] = 3153
11:08:38 [1] = 1
11:08:38 }
11:08:38 leaderOfGroups =
11:08:38 {
11:08:38 }
11:08:38 groupPermissions = object #10 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 }
11:08:38 }
11:08:38 _loaded = True
11:08:38 _version = object #11 (::omero::RInt)
11:08:38 {
11:08:38 _val = 0
11:08:38 }
11:08:38 _name = object #12 (::omero::RString)
11:08:38 {
11:08:38 _val = user
11:08:38 }
11:08:38 _ldap = object #13 (::omero::RBool)
11:08:38 {
11:08:38 _val = False
11:08:38 }
11:08:38 _groupExperimenterMapSeq =
11:08:38 {
11:08:38 }
11:08:38 _groupExperimenterMapLoaded = False
11:08:38 _config =
11:08:38 {
11:08:38 }
11:08:38 _annotationLinksSeq =
11:08:38 {
11:08:38 }
11:08:38 _annotationLinksLoaded = False
11:08:38 _annotationLinksCountPerOwner =
11:08:38 {
11:08:38 }
11:08:38 _description = <nil>
11:08:38 }
11:08:38 _creationEvent = object #14 (::omero::model::Event)
11:08:38 {
11:08:38 _id = object #15 (::omero::RLong)
11:08:38 {
11:08:38 _val = 99681
11:08:38 }
11:08:38 _details = <nil>
11:08:38 _loaded = False
11:08:38 _status = <nil>
11:08:38 _time = <nil>
11:08:38 _experimenter = <nil>
11:08:38 _experimenterGroup = <nil>
11:08:38 _type = <nil>
11:08:38 _containingEvent = <nil>
11:08:38 _logsSeq =
11:08:38 {
11:08:38 }
11:08:38 _logsLoaded = False
11:08:38 _session = <nil>
11:08:38 }
11:08:38 _updateEvent = <object #14>
11:08:38 _permissions = object #16 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 [0] = False
11:08:38 [1] = True
11:08:38 [2] = True
11:08:38 [3] = False
11:08:38 [4] = True
11:08:38 [5] = True
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 _externalInfo = <nil>
11:08:38 _call =
11:08:38 {
11:08:38 key = omero.client.uuid
11:08:38 value = a5d5c7ac-ca7d-4f5f-afe4-e51cec3afcb8
11:08:38 key = omero.session.uuid
11:08:38 value = 9aca36b0-3cd6-45e9-8794-7faa3a7f60d8
11:08:38 }
11:08:38 _event = object #17 (::omero::sys::EventContext)
11:08:38 {
11:08:38 shareId = -1
11:08:38 sessionId = 9295
11:08:38 sessionUuid = *********
11:08:38 userId = 4235
11:08:38 userName = ae4063c5-a814-47aa-89ff-7202fce58921
11:08:38 sudoerId = <nil>
11:08:38 sudoerName = <nil>
11:08:38 groupId = 3153
11:08:38 groupName = 80823002-8dc0-4a31-ba0a-338d9ecbcb93
11:08:38 isAdmin = False
11:08:38 adminPrivileges =
11:08:38 {
11:08:38 }
11:08:38 eventId = -1
11:08:38 eventType = User
11:08:38 memberOfGroups =
11:08:38 {
11:08:38 [0] = 3153
11:08:38 [1] = 1
11:08:38 }
11:08:38 leaderOfGroups =
11:08:38 {
11:08:38 }
11:08:38 groupPermissions = object #18 (::omero::model::Permissions)
11:08:38 {
11:08:38 _restrictions =
11:08:38 {
11:08:38 }
11:08:38 _extendedRestrictions =
11:08:38 {
11:08:38 }
11:08:38 _perm1 = -120
11:08:38 }
11:08:38 }
11:08:38 }
11:08:38 _loaded = True
11:08:38 _version = <object #11>
11:08:38 _pixelsFileMapsSeq =
11:08:38 {
11:08:38 }
11:08:38 _pixelsFileMapsLoaded = False
11:08:38 _pixelsFileMapsCountPerOwner =
11:08:38 {
11:08:38 }
11:08:38 _path = object #19 (::omero::RString)
11:08:38 {
11:08:38 _val = /
11:08:38 }
11:08:38 _repo = object #20 (::omero::RString)
11:08:38 {
11:08:38 _val = ScriptRepo
11:08:38 }
11:08:38 _size = object #21 (::omero::RLong)
11:08:38 {
11:08:38 _val = 168
11:08:38 }
11:08:38 _atime = <nil>
11:08:38 _mtime = <nil>
11:08:38 _ctime = <nil>
11:08:38 _hasher = object #22 (::omero::model::ChecksumAlgorithm)
11:08:38 {
11:08:38 _id = object #23 (::omero::RLong)
11:08:38 {
11:08:38 _val = 6
11:08:38 }
11:08:38 _details = <nil>
11:08:38 _loaded = False
11:08:38 _value = <nil>
11:08:38 }
11:08:38 _hash = object #24 (::omero::RString)
11:08:38 {
11:08:38 _val = 19c1c8d95879df80c06e7125052fc1a1fe25bd16
11:08:38 }
11:08:38 _mimetype = object #25 (::omero::RString)
11:08:38 {
11:08:38 _val = text/x-python
11:08:38 }
11:08:38 _filesetEntriesSeq =
11:08:38 {
11:08:38 }
11:08:38 _filesetEntriesLoaded = True
11:08:38 _annotationLinksSeq =
11:08:38 {
11:08:38 }
11:08:38 _annotationLinksLoaded = False
11:08:38 _annotationLinksCountPerOwner =
11:08:38 {
11:08:38 }
11:08:38 _name = object #26 (::omero::RString)
11:08:38 {
11:08:38 _val = 4f9e8eb2-90a6-4963-8132-a7d1d3d0b9e9.py
11:08:38 }
11:08:38 }), which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`?
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_scripts.py::TestScripts::testRunScript
11:08:38 OmeroPy/test/integration/test_scripts.py::TestScripts::testRunScript
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/decorators.py:82: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:08:38 log.warn(
11:08:38 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
11:08:38 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
11:08:38 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
11:08:38 OmeroPy/test/integration/test_tickets1000.py::TestTicket1000::test880
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1313: DeprecationWarning: This method is deprecated as of OMERO 5.3.0
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
11:08:38 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
11:08:38 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
11:08:38 OmeroPy/test/integration/test_tickets1000.py::TestTicket1000::test880
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1074: DeprecationWarning: This method is deprecated as of OMERO 5.3.0. Use upload_plane instead
11:08:38 warnings.warn(
11:08:38 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
11:08:38 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
11:08:38 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testThumbs
11:08:38 OmeroPy/test/integration/test_tickets1000.py::TestTicket1000::test880
11:08:38 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1259: DeprecationWarning: This method is deprecated as of OMERO 5.3.0. Use reset_rendering_settings
11:08:38 warnings.warn(
11:08:38 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
11:08:38 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/integration/junit-results.xml -
11:08:38 =========================== short test summary info ============================
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testOriginalFileTmpfile[] - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testOriginalFileTmpfile[OriginalFile:] - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testOriginalFileStdout[] - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testOriginalFileStdout[OriginalFile:] - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testOriginalFileMultipleGroups[] - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testOriginalFileMultipleGroups[OriginalFile:] - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testFileAnnotationTmpfile - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testFileAnnotationStdout - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testFileAnnotationMultipleGroups - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testImageFileset[True] - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testImageFileset[False] - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testSingleImageWithCompanion - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testMIF - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testImageMultipleGroups - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testPolicyGlobalRestriction[+read,+write,+image] - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image] - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[-read,+write,+image,-plate] - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image,-plate] - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/clitest/test_download.py::TestDownload::testPolicyGroupRestriction[+read,+write,+image,+plate] - omero.cli.NonZeroReturnCode: assert failed
11:08:38 FAILED test/integration/gatewaytest/test_user.py::TestUser::testSaveAs - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testClose - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_connection.py::TestConnectionMethods::testTopLevelObjects - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_get_objects.py::TestFindObject::testFindExperimenter - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetAnnotations - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImage - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-True] - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[True-False] - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-True] - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testGetImageLoadPixels[False-False] - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_get_objects.py::TestGetObject::testTraversal - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/tinyTest.d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testThumbnail - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testThumbnailSet - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderingModels - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testSplitChannel - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testLinePlots - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testProjections - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testProperties - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testPixelSizeUnits - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testUnitsGetValue - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testChannelWavelengthUnits - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testExposureTimeUnits - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testShortname - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testImageDate - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testSimpleMarshal - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testExport - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_resolution - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderJpegRegion_invalid_resolution - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_image.py::TestImage::testRenderBirdsEyeView_Size - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testReuseRawPixelsStore - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testPlaneInfo - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testPixelsType - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetTile - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlane - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnGetPlane - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnClose - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetPlanesExceptionOnBoth - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_pixels.py::TestPixels::testGetHistogram - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testDefault - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCustomized - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testChannelWindows - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testFloatDefaultMinMax - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testEmissionWave - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testBatchCopy - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGroupBasedPermissions - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetRdefs - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testResetDefaults - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettings - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsInvalid - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testQuantizationSettingsBulk - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testGetChannelsNoRE - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsNoRE - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testSetActiveChannelsWithRE - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[True] - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::test_set_active_channels_set_inactive[False] - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testUnregisterService - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testRegisterService - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_rdefs.py::TestRDefs::testCloseRE - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_wrapper.py::TestWrapper::testAllObjectsWrapped - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDatasetWrapper - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 ERROR test/integration/gatewaytest/test_wrapper.py::TestWrapper::testDetailsWrapper - OSError: No such file /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/scripts/CHOBI_d3d.dv
11:08:38 = 20 failed, 1934 passed, 9 skipped, 36 deselected, 1838 warnings, 62 errors in 4676.02s (1:17:56) =
11:08:39 !! 10/03/24 12:08:39.876 error: 257 communicators not destroyed during global destruction.
11:08:39 Result: 1
11:08:39
11:08:39 BUILD SUCCESSFUL
11:08:39 Total time: 77 minutes 59 seconds
11:08:40 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroFS/build.xml integration -Dtestreports.dir=target/reports/integration
11:08:40 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
11:08:40 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS/build.xml
11:08:40 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
11:08:40
11:08:40 python-integration:
11:08:40 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS/target/reports/integration
11:08:41 ============================= test session starts ==============================
11:08:41 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
11:08:41 cachedir: .pytest_cache
11:08:41 django: version: 4.2.16, settings: omeroweb.settings (from ini)
11:08:41 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
11:08:41 configfile: pytest.ini
11:08:41 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
11:08:41 collecting ... collected 1 item
11:08:41 test/integration/test_dbclient.py::TestDropBoxClient::test1 PASSED [100%]
11:08:41 =============================== warnings summary ===============================
11:08:41 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
11:08:41 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
11:08:41 import sys, string, imp, os, threading, warnings, datetime
11:08:41 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
11:08:41 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
11:08:41 warnings.warn(
11:08:41 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
11:08:41 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
11:08:41 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
11:08:41 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
11:08:41 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
11:08:41 from pkg_resources import DistributionNotFound, get_distribution
11:08:41 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
11:08:41 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS/target/reports/integration/junit-results.xml -
11:08:41 ======================== 1 passed, 4 warnings in 0.07s =========================
11:08:41
11:08:41 BUILD SUCCESSFUL
11:08:41 Total time: 1 second
11:08:41 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroWeb/build.xml integration -Dtestreports.dir=target/reports/integration
11:08:41 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
11:08:41 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/build.xml
11:08:41 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
11:08:42 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
11:08:42
11:08:42 python-integration:
11:08:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/target/reports/integration
11:08:42 ============================= test session starts ==============================
11:08:42 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
11:08:42 cachedir: .pytest_cache
11:08:42 django: version: 4.2.16, settings: omeroweb.settings (from ini)
11:08:42 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
11:08:42 configfile: pytest.ini
11:08:42 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
11:08:44 collecting ... collected 430 items
11:08:50 test/integration/test_annotate.py::TestMapAnnotations::test_annotate_map PASSED [ 0%]
11:08:55 test/integration/test_annotate.py::TestTagging::test_create_tag PASSED [ 0%]
11:09:02 test/integration/test_annotate.py::TestTagging::test_annotate_tag PASSED [ 0%]
11:09:08 test/integration/test_annotate.py::TestBatchAnnotate::test_batch_annotate_tag PASSED [ 0%]
11:09:14 test/integration/test_annotate.py::TestFileAnnotations::test_add_fileannotations_form PASSED [ 1%]
11:09:17 test/integration/test_annotate.py::TestFileAnnotations::test_batch_add_fileannotations[1] PASSED [ 1%]
11:09:20 test/integration/test_annotate.py::TestFileAnnotations::test_batch_add_fileannotations[2] PASSED [ 1%]
11:09:26 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Plate] PASSED [ 1%]
11:09:28 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Image] PASSED [ 2%]
11:09:31 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Well] PASSED [ 2%]
11:09:34 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Channel] PASSED [ 2%]
11:09:37 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-foo] PASSED [ 2%]
11:09:39 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Plate] PASSED [ 3%]
11:09:42 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Image] PASSED [ 3%]
11:09:45 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Well] PASSED [ 3%]
11:09:48 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Channel] PASSED [ 3%]
11:09:50 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-foo] PASSED [ 3%]
11:09:53 test/integration/test_api_containers.py::TestContainers::test_delete_unsupported[Plate] PASSED [ 4%]
11:09:56 test/integration/test_api_containers.py::TestContainers::test_delete_unsupported[Image] PASSED [ 4%]
11:09:59 test/integration/test_api_containers.py::TestContainers::test_delete_unsupported[Well] PASSED [ 4%]
11:10:00 test/integration/test_api_containers.py::TestContainers::test_container_crud[Project] PASSED [ 4%]
11:10:01 test/integration/test_api_containers.py::TestContainers::test_container_crud[Dataset] PASSED [ 5%]
11:10:02 test/integration/test_api_containers.py::TestContainers::test_container_crud[Screen] PASSED [ 5%]
11:10:07 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Dataset-True] PASSED [ 5%]
11:10:12 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Dataset-False] PASSED [ 5%]
11:10:16 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Plate-True] PASSED [ 6%]
11:10:21 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Plate-False] PASSED [ 6%]
11:10:24 test/integration/test_api_containers.py::TestContainers::test_screens PASSED [ 6%]
11:10:27 test/integration/test_api_containers.py::TestContainers::test_screen_plates_update PASSED [ 6%]
11:10:30 test/integration/test_api_containers.py::TestContainers::test_container_tags_update[dtype0] PASSED [ 6%]
11:10:32 test/integration/test_api_containers.py::TestContainers::test_container_tags_update[dtype1] PASSED [ 7%]
11:10:35 test/integration/test_api_containers.py::TestContainers::test_container_tags_update[dtype2] PASSED [ 7%]
11:10:38 test/integration/test_api_containers.py::TestContainers::test_spw_urls PASSED [ 7%]
11:10:41 test/integration/test_api_containers.py::TestContainers::test_spw_parent_urls PASSED [ 7%]
11:10:46 test/integration/test_api_containers.py::TestContainers::test_pdi_urls PASSED [ 8%]
11:10:50 test/integration/test_api_containers.py::TestContainers::test_pdi_parent_urls PASSED [ 8%]
11:10:53 test/integration/test_api_errors.py::TestErrors::test_save_post_no_id PASSED [ 8%]
11:10:53 test/integration/test_api_errors.py::TestErrors::test_save_put_id PASSED [ 8%]
11:10:53 test/integration/test_api_errors.py::TestErrors::test_marshal_type PASSED [ 9%]
11:10:53 test/integration/test_api_errors.py::TestErrors::test_invalid_parameter PASSED [ 9%]
11:10:53 test/integration/test_api_errors.py::TestErrors::test_marshal_validation PASSED [ 9%]
11:10:56 test/integration/test_api_errors.py::TestErrors::test_security_violation PASSED [ 9%]
11:10:59 test/integration/test_api_errors.py::TestErrors::test_validation_exception PASSED [ 10%]
11:11:02 test/integration/test_api_errors.py::TestErrors::test_project_validation PASSED [ 10%]
11:11:07 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method0-Experimenter] PASSED [ 10%]
11:11:10 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method0-ExperimenterGroup] PASSED [ 10%]
11:11:13 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method1-Experimenter] PASSED [ 10%]
11:11:15 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method1-ExperimenterGroup] PASSED [ 11%]
11:11:18 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_delete_unsupported[Experimenter] PASSED [ 11%]
11:11:21 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_delete_unsupported[ExperimenterGroup] PASSED [ 11%]
11:11:30 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_experimenters_groups PASSED [ 11%]
11:11:33 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_groups_experimenters PASSED [ 12%]
11:11:36 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_filter_groups PASSED [ 12%]
11:11:39 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_filter_experimenters PASSED [ 12%]
11:11:46 test/integration/test_api_images.py::TestImages::test_dataset_images PASSED [ 12%]
11:11:49 test/integration/test_api_login.py::TestLogin::test_versions PASSED [ 13%]
11:11:49 test/integration/test_api_login.py::TestLogin::test_base_url PASSED [ 13%]
11:11:49 test/integration/test_api_login.py::TestLogin::test_base_url_versions_404 PASSED [ 13%]
11:11:49 test/integration/test_api_login.py::TestLogin::test_login_get PASSED [ 13%]
11:11:49 test/integration/test_api_login.py::TestLogin::test_login_csrf PASSED [ 13%]
11:11:49 test/integration/test_api_login.py::TestLogin::test_login_errors[credentials0] PASSED [ 14%]
11:11:49 test/integration/test_api_login.py::TestLogin::test_login_errors[credentials1] PASSED [ 14%]
11:11:49 test/integration/test_api_login.py::TestLogin::test_login_errors[credentials2] PASSED [ 14%]
11:11:49 test/integration/test_api_login.py::TestLogin::test_login_errors[credentials3] PASSED [ 14%]
11:11:52 test/integration/test_api_login.py::TestLogin::test_login_example PASSED [ 15%]
11:11:55 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_not_logged_in PASSED [ 15%]
11:11:57 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_no_results PASSED [ 15%]
11:12:00 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_user PASSED [ 15%]
11:12:06 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_another_user PASSED [ 16%]
11:12:08 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_another_group PASSED [ 16%]
11:12:11 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_all_groups PASSED [ 16%]
11:12:17 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_all_users PASSED [ 16%]
11:12:22 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_pagination PASSED [ 16%]
11:12:28 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_params PASSED [ 17%]
11:12:28 test/integration/test_api_projects.py::TestProjects::test_project_create_read PASSED [ 17%]
11:12:31 test/integration/test_api_projects.py::TestProjects::test_project_create_other_group PASSED [ 17%]
11:12:34 test/integration/test_api_projects.py::TestProjects::test_project_update PASSED [ 17%]
11:12:37 test/integration/test_api_projects.py::TestProjects::test_project_datasets_update[Project] PASSED [ 18%]
11:12:40 test/integration/test_api_projects.py::TestProjects::test_project_datasets_update[Dataset] PASSED [ 18%]
11:12:43 test/integration/test_api_projects.py::TestProjects::test_project_delete PASSED [ 18%]
11:12:49 test/integration/test_api_rois.py::TestContainers::test_image_rois PASSED [ 18%]
11:12:52 test/integration/test_api_rois.py::TestContainers::test_roi_delete PASSED [ 19%]
11:12:55 test/integration/test_api_rois.py::TestContainers::test_shapes PASSED [ 19%]
11:13:03 test/integration/test_api_wells.py::TestWells::test_plate_wells PASSED [ 19%]
11:13:07 test/integration/test_api_wells.py::TestWells::test_plate_index_wells PASSED [ 19%]
11:13:11 test/integration/test_api_wells.py::TestWells::test_well PASSED [ 20%]
11:13:14 test/integration/test_chgrp.py::TestChgrp::test_load_chgrp_groups[user] PASSED [ 20%]
11:13:14 test/integration/test_chgrp.py::TestChgrp::test_load_chgrp_groups[admin] PASSED [ 20%]
11:13:16 test/integration/test_chgrp.py::TestChgrp::test_chgrp_dry_run[user] PASSED [ 20%]
11:13:16 test/integration/test_chgrp.py::TestChgrp::test_chgrp_new_container[user] PASSED [ 20%]
11:13:17 test/integration/test_chgrp.py::TestChgrp::test_chgrp_new_container[admin] PASSED [ 21%]
11:13:18 test/integration/test_chgrp.py::TestChgrp::test_chgrp_old_container[user] PASSED [ 21%]
11:13:19 test/integration/test_chgrp.py::TestChgrp::test_chgrp_old_container[admin] PASSED [ 21%]
11:13:27 test/integration/test_chown.py::TestChown::test_chown_dry_run[admin] PASSED [ 21%]
11:13:27 test/integration/test_config.py::test_flattenProperties PASSED [ 22%]
11:13:32 test/integration/test_config.py::TestConfig::testDefaultConfig PASSED [ 22%]
11:13:34 test/integration/test_config.py::TestConfig::testDefaultConfigConversion PASSED [ 22%]
11:13:37 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-colleagues.label] PASSED [ 22%]
11:13:39 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-leaders.label] PASSED [ 23%]
11:13:42 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-everyone.label] PASSED [ 23%]
11:13:45 test/integration/test_containers.py::TestContainers::test_add_and_rename_container PASSED [ 23%]
11:13:48 test/integration/test_containers.py::TestContainers::test_add_owned_container PASSED [ 23%]
11:13:48 test/integration/test_containers.py::TestContainers::test_paste_move_remove_deletamany_image PASSED [ 23%]
11:13:52 test/integration/test_containers.py::TestContainers::test_edit_share PASSED [ 24%]
11:13:55 test/integration/test_csrf.py::TestCsrf::test_csrf_middleware_enabled PASSED [ 24%]
11:13:55 test/integration/test_csrf.py::TestCsrf::test_forgot_password PASSED [ 24%]
11:13:55 test/integration/test_csrf.py::TestCsrf::test_move_data PASSED [ 24%]
11:13:55 test/integration/test_csrf.py::TestCsrf::test_add_and_remove_comment PASSED [ 25%]
11:13:55 test/integration/test_csrf.py::TestCsrf::test_attach_file PASSED [ 25%]
11:13:56 test/integration/test_csrf.py::TestCsrf::test_edit_channel_names PASSED [ 25%]
11:13:56 test/integration/test_csrf.py::TestCsrf::test_copy_past_rendering_settings PASSED [ 25%]
11:13:56 test/integration/test_csrf.py::TestCsrf::test_reset_rendering_settings PASSED [ 26%]
11:13:56 test/integration/test_csrf.py::TestCsrf::test_apply_owners_rendering_settings PASSED [ 26%]
11:13:57 test/integration/test_csrf.py::TestCsrf::test_ome_tiff_script PASSED [ 26%]
11:13:58 test/integration/test_csrf.py::TestCsrf::test_script PASSED [ 26%]
11:13:58 test/integration/test_csrf.py::TestCsrf::test_myaccount PASSED [ 26%]
11:13:59 test/integration/test_csrf.py::TestCsrf::test_avatar PASSED [ 27%]
11:14:07 test/integration/test_csrf.py::TestCsrf::test_create_group PASSED [ 27%]
11:14:12 test/integration/test_csrf.py::TestCsrf::test_create_user PASSED [ 27%]
11:14:20 test/integration/test_csrf.py::TestCsrf::test_edit_group PASSED [ 27%]
11:14:27 test/integration/test_csrf.py::TestCsrf::test_edit_user PASSED [ 28%]
11:14:34 test/integration/test_csrf.py::TestCsrf::test_edit_group_by_owner PASSED [ 28%]
11:14:37 test/integration/test_csrf.py::TestCsrf::test_change_password PASSED [ 28%]
11:14:40 test/integration/test_csrf.py::TestCsrf::test_su PASSED [ 28%]
11:14:43 test/integration/test_decorators.py::TestShow::test_conn_cleanup PASSED [ 29%]
11:14:46 test/integration/test_download.py::TestDownload::test_spw_download PASSED [ 29%]
11:14:49 test/integration/test_download.py::TestDownload::test_orphaned_image_direct_download PASSED [ 29%]
11:14:53 test/integration/test_download.py::TestDownload::test_orphaned_image_download PASSED [ 29%]
11:14:56 test/integration/test_download.py::TestDownload::test_image_in_dataset_download PASSED [ 30%]
11:14:59 test/integration/test_download.py::TestDownload::test_image_in_dataset_in_project_download PASSED [ 30%]
11:14:59 test/integration/test_download.py::TestDownload::test_well_download PASSED [ 30%]
11:15:03 test/integration/test_download.py::TestDownload::test_attachment_download PASSED [ 30%]
11:15:06 test/integration/test_download.py::TestDownloadAs::test_download_image_as[jpeg] PASSED [ 30%]
11:15:06 test/integration/test_download.py::TestDownloadAs::test_download_image_as[png] PASSED [ 31%]
11:15:07 test/integration/test_download.py::TestDownloadAs::test_download_image_as[tif] PASSED [ 31%]
11:15:07 test/integration/test_download.py::TestDownloadAs::test_download_images_as_zip[jpeg] PASSED [ 31%]
11:15:07 test/integration/test_download.py::TestDownloadAs::test_download_images_as_zip[png] PASSED [ 31%]
11:15:08 test/integration/test_download.py::TestDownloadAs::test_download_images_as_zip[tif] PASSED [ 32%]
11:15:25 test/integration/test_groups_users.py::TestGroupsUsers::test_group_users_menu PASSED [ 32%]
11:15:28 test/integration/test_histogram.py::TestHistogram::test_histogram_bin_count[None] PASSED [ 32%]
11:15:28 test/integration/test_histogram.py::TestHistogram::test_histogram_bin_count[10] PASSED [ 32%]
11:15:34 test/integration/test_history.py::TestHistory::test_history PASSED [ 33%]
11:15:34 test/integration/test_history.py::TestHistory::test_calendar_default PASSED [ 33%]
11:15:34 test/integration/test_history.py::TestHistory::test_calendar_month PASSED [ 33%]
11:15:37 test/integration/test_links.py::TestLinks::test_link_project_datasets PASSED [ 33%]
11:15:37 test/integration/test_links.py::TestLinks::test_link_datasets_images PASSED [ 33%]
11:15:38 test/integration/test_links.py::TestLinks::test_link_unlink_tagset_tags PASSED [ 34%]
11:15:38 test/integration/test_links.py::TestLinks::test_unlink_screen_plate PASSED [ 34%]
11:15:41 test/integration/test_login.py::TestLogin::test_login_errors[credentials0] PASSED [ 34%]
11:15:41 test/integration/test_login.py::TestLogin::test_login_errors[credentials1] PASSED [ 34%]
11:15:41 test/integration/test_login.py::TestLogin::test_login_errors[credentials2] PASSED [ 35%]
11:15:41 test/integration/test_login.py::TestLogin::test_login_errors[credentials3] PASSED [ 35%]
11:15:41 test/integration/test_login.py::TestLogin::test_get_login_page PASSED [ 35%]
11:15:41 test/integration/test_login.py::TestLogin::test_login_redirect[] PASSED [ 35%]
11:15:41 test/integration/test_login.py::TestLogin::test_login_redirect[/webclient/usertags/] PASSED [ 36%]
11:15:41 test/integration/test_login.py::TestLogin::test_login_view PASSED [ 36%]
11:15:48 test/integration/test_marshal.py::TestImgDetail::test_image_detail PASSED [ 36%]
11:15:51 test/integration/test_metadata.py::TestCoreMetadata::test_pixel_size_units PASSED [ 36%]
11:15:52 test/integration/test_metadata.py::TestCoreMetadata::test_none_pixel_size PASSED [ 36%]
11:15:55 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[True] PASSED [ 37%]
11:15:55 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[False] PASSED [ 37%]
11:15:55 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_not_file PASSED [ 37%]
11:16:00 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[shrink] PASSED [ 37%]
11:16:03 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[trim] PASSED [ 38%]
11:16:06 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[expand] PASSED [ 38%]
11:16:09 test/integration/test_plategrid.py::TestPlateGrid::test_well_images PASSED [ 38%]
11:16:12 test/integration/test_plategrid.py::TestPlateGrid::test_instantiation PASSED [ 38%]
11:16:14 test/integration/test_plategrid.py::TestPlateGrid::test_metadata_grid_size PASSED [ 39%]
11:16:17 test/integration/test_plategrid.py::TestPlateGrid::test_metadata_thumbnail_url PASSED [ 39%]
11:16:20 test/integration/test_plategrid.py::TestPlateGrid::test_full_grid PASSED [ 39%]
11:16:23 test/integration/test_plategrid.py::TestPlateGrid::test_acquisition_date PASSED [ 39%]
11:16:25 test/integration/test_plategrid.py::TestPlateGrid::test_creation_date PASSED [ 40%]
11:16:28 test/integration/test_plategrid.py::TestPlateGrid::test_description PASSED [ 40%]
11:16:31 test/integration/test_plategrid.py::TestScreenPlateTables::test_get_plate_table PASSED [ 40%]
11:16:35 test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_image PASSED [ 40%]
11:16:36 test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url PASSED [ 40%]
11:16:36 test/integration/test_rendering.py::TestRendering::test_all_rendering_defs PASSED [ 41%]
11:16:42 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_incomplete_request PASSED [ 41%]
11:16:45 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_malformed_tile_argument PASSED [ 41%]
11:16:48 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_malformed_region_argument PASSED [ 41%]
11:16:55 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params PASSED [ 42%]
11:16:58 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_large_image PASSED [ 42%]
11:17:01 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_negative_resolution PASSED [ 42%]
11:17:05 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_invalid_resolution PASSED [ 42%]
11:17:17 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_big_image PASSED [ 43%]
11:17:23 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_region_params PASSED [ 43%]
11:17:33 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_region_params_big_image PASSED [ 43%]
11:17:45 test/integration/test_rendering.py::TestRenderImageRegion::test_render_birds_eye_view_big_image PASSED [ 43%]
11:17:57 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_big_image_resolution PASSED [ 43%]
11:18:03 test/integration/test_scripts.py::TestScripts::test_script_ui_defaults PASSED [ 44%]
11:18:07 test/integration/test_scripts.py::TestScripts::test_script_inputs_outputs[inputs0] PASSED [ 44%]
11:18:11 test/integration/test_scripts.py::TestScripts::test_script_inputs_outputs[inputs1] PASSED [ 44%]
11:18:16 test/integration/test_scripts.py::TestScripts::test_script_inputs_outputs[inputs2] PASSED [ 44%]
11:18:19 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[SplitView] PASSED [ 45%]
11:18:20 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[Thumbnail] PASSED [ 45%]
11:18:21 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[MakeMovie] PASSED [ 45%]
11:18:24 test/integration/test_show.py::TestShow::test_empty_path PASSED [ 45%]
11:18:24 test/integration/test_show.py::TestShow::test_project_legacy_path PASSED [ 46%]
11:18:24 test/integration/test_show.py::TestShow::test_projects_legacy_show PASSED [ 46%]
11:18:24 test/integration/test_show.py::TestShow::test_project_dataset_legacy_path PASSED [ 46%]
11:18:24 test/integration/test_show.py::TestShow::test_project_dataset_image_legacy_path PASSED [ 46%]
11:18:24 test/integration/test_show.py::TestShow::test_tag_redirect[1] PASSED [ 46%]
11:18:24 test/integration/test_show.py::TestShow::test_tag_redirect[2] PASSED [ 47%]
11:18:24 test/integration/test_show.py::TestShow::test_tagset_redirect[1] PASSED [ 47%]
11:18:24 test/integration/test_show.py::TestShow::test_tagset_redirect[2] PASSED [ 47%]
11:18:24 test/integration/test_show.py::TestShow::test_tag_legacy_path[1] PASSED [ 47%]
11:18:24 test/integration/test_show.py::TestShow::test_tag_legacy_path[2] PASSED [ 48%]
11:18:24 test/integration/test_show.py::TestShow::test_tagset_tag_legacy_path PASSED [ 48%]
11:18:25 test/integration/test_show.py::TestShow::test_image_legacy_path PASSED [ 48%]
11:18:25 test/integration/test_show.py::TestShow::test_screen_legacy_path PASSED [ 48%]
11:18:25 test/integration/test_show.py::TestShow::test_screen_plate_legacy_path PASSED [ 49%]
11:18:25 test/integration/test_show.py::TestShow::test_screen_plate_well_show PASSED [ 49%]
11:18:25 test/integration/test_show.py::TestShow::test_screen_plate_run_well_show[0] PASSED [ 49%]
11:18:25 test/integration/test_show.py::TestShow::test_screen_plate_run_well_show[1] PASSED [ 49%]
11:18:25 test/integration/test_show.py::TestShow::test_project_dataset_image_show PASSED [ 50%]
11:18:25 test/integration/test_show.py::TestShow::test_project_dataset_image_roi_show PASSED [ 50%]
11:18:25 test/integration/test_show.py::TestShow::test_project_by_id PASSED [ 50%]
11:18:25 test/integration/test_show.py::TestShow::test_project_by_name PASSED [ 50%]
11:18:25 test/integration/test_show.py::TestShow::test_tag_by_value[1] PASSED [ 50%]
11:18:25 test/integration/test_show.py::TestShow::test_tag_by_value[2] PASSED [ 51%]
11:18:25 test/integration/test_show.py::TestShow::test_tagset_tag_by_id PASSED [ 51%]
11:18:25 test/integration/test_show.py::TestShow::test_multiple_well_by_id[plate.name=%(plate_name)s|well.name=%(well_name)s-A10] PASSED [ 51%]
11:18:25 test/integration/test_show.py::TestShow::test_multiple_well_by_id[plate.name=%(plate_name)s|well.name=%(well_name)s-1J] PASSED [ 51%]
11:18:25 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[plate.name=%(plate_name)s|well.name=%(well_name)s-A10] PASSED [ 52%]
11:18:25 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[plate.name=%(plate_name)s|well.name=%(well_name)s-1J] PASSED [ 52%]
11:18:25 test/integration/test_show.py::TestShow::test_multiple_well_by_id[run=%(plate_acquisition_id)s|well.name=%(well_name)s-A10] PASSED [ 52%]
11:18:25 test/integration/test_show.py::TestShow::test_multiple_well_by_id[run=%(plate_acquisition_id)s|well.name=%(well_name)s-1J] PASSED [ 52%]
11:18:25 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[run=%(plate_acquisition_id)s|well.name=%(well_name)s-A10] PASSED [ 53%]
11:18:25 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[run=%(plate_acquisition_id)s|well.name=%(well_name)s-1J] PASSED [ 53%]
11:18:25 test/integration/test_show.py::TestShow::test_well_by_name[A10] PASSED [ 53%]
11:18:25 test/integration/test_show.py::TestShow::test_well_by_name[1J] PASSED [ 53%]
11:18:26 test/integration/test_show.py::TestShow::test_screen_plate_run_illegal_run PASSED [ 53%]
11:18:26 test/integration/test_show.py::TestShow::test_path_to_no_objects PASSED [ 54%]
11:18:26 test/integration/test_show.py::TestShow::test_project_dataset_image PASSED [ 54%]
11:18:26 test/integration/test_show.py::TestShow::test_project_dataset_images_pagination PASSED [ 54%]
11:18:26 test/integration/test_show.py::TestShow::test_orphaned_pagination PASSED [ 54%]
11:18:26 test/integration/test_show.py::TestShow::test_get_image_ids_dataset PASSED [ 55%]
11:18:26 test/integration/test_show.py::TestShow::test_image PASSED [ 55%]
11:18:26 test/integration/test_show.py::TestShow::test_roi PASSED [ 55%]
11:18:26 test/integration/test_show.py::TestShow::test_shape PASSED [ 55%]
11:18:26 test/integration/test_show.py::TestShow::test_well_image_shape PASSED [ 56%]
11:18:26 test/integration/test_show.py::TestShow::test_image_orphan PASSED [ 56%]
11:18:26 test/integration/test_show.py::TestShow::test_image_multi_link PASSED [ 56%]
11:18:26 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_dataset PASSED [ 56%]
11:18:26 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_dataset_project PASSED [ 56%]
11:18:26 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_project PASSED [ 57%]
11:18:26 test/integration/test_show.py::TestShow::test_dataset PASSED [ 57%]
11:18:26 test/integration/test_show.py::TestShow::test_dataset_multi_link PASSED [ 57%]
11:18:26 test/integration/test_show.py::TestShow::test_dataset_multi_link_restrict_project PASSED [ 57%]
11:18:26 test/integration/test_show.py::TestShow::test_dataset_orphan PASSED [ 58%]
11:18:26 test/integration/test_show.py::TestShow::test_project PASSED [ 58%]
11:18:26 test/integration/test_show.py::TestShow::test_acquisition PASSED [ 58%]
11:18:26 test/integration/test_show.py::TestShow::test_acquisition_restrict_plate PASSED [ 58%]
11:18:26 test/integration/test_show.py::TestShow::test_acquisition_restrict_screen PASSED [ 59%]
11:18:26 test/integration/test_show.py::TestShow::test_acquisition_restrict_plate_screen PASSED [ 59%]
11:18:26 test/integration/test_show.py::TestShow::test_well PASSED [ 59%]
11:18:26 test/integration/test_show.py::TestShow::test_well_multi PASSED [ 59%]
11:18:27 test/integration/test_show.py::TestShow::test_well_image PASSED [ 60%]
11:18:27 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_multi PASSED [ 60%]
11:18:27 test/integration/test_show.py::TestShow::test_well_restrict_plate_multi PASSED [ 60%]
11:18:27 test/integration/test_show.py::TestShow::test_well_restrict_screen_multi PASSED [ 60%]
11:18:27 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_plate_multi PASSED [ 60%]
11:18:27 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_screen_multi PASSED [ 61%]
11:18:27 test/integration/test_show.py::TestShow::test_well_restrict_acquisition_plate_screen_multi PASSED [ 61%]
11:18:27 test/integration/test_show.py::TestShow::test_well_restrict_plate_screen_multi PASSED [ 61%]
11:18:27 test/integration/test_show.py::TestShow::test_plate PASSED [ 61%]
11:18:27 test/integration/test_show.py::TestShow::test_plate_restrict_screen PASSED [ 62%]
11:18:27 test/integration/test_show.py::TestShow::test_screen PASSED [ 62%]
11:18:30 test/integration/test_simple.py::TestSimple::testCurrentUser PASSED [ 62%]
11:18:33 test/integration/test_simple.py::TestSimple::testImport PASSED [ 62%]
11:18:39 test/integration/test_table.py::TestOmeroTables::test_table_html PASSED [ 63%]
11:18:43 test/integration/test_table.py::TestOmeroTables::test_table_pagination PASSED [ 63%]
11:18:46 test/integration/test_table.py::TestOmeroTables::test_table_query PASSED [ 63%]
11:18:49 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result0] PASSED [ 63%]
11:18:52 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result1] PASSED [ 63%]
11:18:55 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result2] PASSED [ 64%]
11:18:58 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result3] PASSED [ 64%]
11:19:01 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result4] PASSED [ 64%]
11:19:04 test/integration/test_table.py::TestOmeroTables::test_table_bitmask[query_result5] PASSED [ 64%]
11:19:07 test/integration/test_table.py::TestOmeroTables::test_table_metadata PASSED [ 65%]
11:19:10 test/integration/test_table.py::TestOmeroTables::test_table_get_where_list[query_result0] PASSED [ 65%]
11:19:13 test/integration/test_table.py::TestOmeroTables::test_table_get_where_list[query_result1] PASSED [ 65%]
11:19:17 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice[query_result0] PASSED [ 65%]
11:19:19 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice[query_result1] PASSED [ 66%]
11:19:23 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice[query_result2] PASSED [ 66%]
11:19:25 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity0] PASSED [ 66%]
11:19:28 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity1] PASSED [ 66%]
11:19:31 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity2] PASSED [ 66%]
11:19:34 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity3] PASSED [ 67%]
11:19:37 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity4] PASSED [ 67%]
11:19:40 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity5] PASSED [ 67%]
11:19:43 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity6] PASSED [ 67%]
11:19:46 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity7] PASSED [ 68%]
11:19:49 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity8] PASSED [ 68%]
11:19:53 test/integration/test_table.py::TestOmeroTables::test_table_perform_slice_errors[query_validity9] PASSED [ 68%]
11:19:56 test/integration/test_tags.py::TestTags::test_create_tag_and_tagset PASSED [ 68%]
11:19:56 test/integration/test_tags.py::TestTags::test_edit_tag_and_tagset[tagset] PASSED [ 69%]
11:19:56 test/integration/test_tags.py::TestTags::test_edit_tag_and_tagset[tag] PASSED [ 69%]
11:19:56 test/integration/test_tags.py::TestTags::test_add_edit_and_remove_tag PASSED [ 69%]
11:20:13 test/integration/test_tags.py::TestTags::test_add_remove_tags PASSED [ 69%]
11:20:16 test/integration/test_thumbnails.py::TestThumbnails::test_default_thumb_size[None] PASSED [ 70%]
11:20:17 test/integration/test_thumbnails.py::TestThumbnails::test_default_thumb_size[100] PASSED [ 70%]
11:20:17 test/integration/test_thumbnails.py::TestThumbnails::test_base64_thumb[None] PASSED [ 70%]
11:20:17 test/integration/test_thumbnails.py::TestThumbnails::test_base64_thumb[100] PASSED [ 70%]
11:20:18 test/integration/test_thumbnails.py::TestThumbnails::test_base64_thumb_set PASSED [ 70%]
11:20:22 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[0-1] PASSED [ 71%]
11:20:23 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[0-0] PASSED [ 71%]
11:20:24 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[1-1] PASSED [ 71%]
11:20:25 test/integration/test_thumbnails.py::TestRoiThumbnails::test_roi_thumbnail[1-0] PASSED [ 71%]
11:20:36 test/integration/test_tree.py::TestTree::test_marshal_experimenter PASSED [ 72%]
11:20:38 test/integration/test_tree.py::TestTree::test_marshal_projects_no_results PASSED [ 72%]
11:20:41 test/integration/test_tree.py::TestTree::test_marshal_projects_user PASSED [ 72%]
11:20:47 test/integration/test_tree.py::TestTree::test_marshal_projects_another_user PASSED [ 72%]
11:20:49 test/integration/test_tree.py::TestTree::test_marshal_projects_another_group PASSED [ 73%]
11:20:52 test/integration/test_tree.py::TestTree::test_marshal_projects_all_groups PASSED [ 73%]
11:20:57 test/integration/test_tree.py::TestTree::test_marshal_projects_all_users PASSED [ 73%]
11:21:03 test/integration/test_tree.py::TestTree::test_marshal_projects_all_groups_all_users PASSED [ 73%]
11:21:05 test/integration/test_tree.py::TestTree::test_marshal_datasets_no_results PASSED [ 73%]
11:21:08 test/integration/test_tree.py::TestTree::test_marshal_datasets_user PASSED [ 74%]
11:21:13 test/integration/test_tree.py::TestTree::test_marshal_datasets_another_user PASSED [ 74%]
11:21:16 test/integration/test_tree.py::TestTree::test_marshal_datasets_another_group PASSED [ 74%]
11:21:19 test/integration/test_tree.py::TestTree::test_marshal_datasets_all_groups PASSED [ 74%]
11:21:24 test/integration/test_tree.py::TestTree::test_marshal_datasets_all_users PASSED [ 75%]
11:21:29 test/integration/test_tree.py::TestTree::test_marshal_datasets_all_groups_all_users PASSED [ 75%]
11:21:32 test/integration/test_tree.py::TestTree::test_marshal_datasets_project PASSED [ 75%]
11:21:37 test/integration/test_tree.py::TestTree::test_marshal_datasets_project_crosslink PASSED [ 75%]
11:21:40 test/integration/test_tree.py::TestTree::test_marshal_images_no_results PASSED [ 76%]
11:21:43 test/integration/test_tree.py::TestTree::test_marshal_images_user PASSED [ 76%]
11:21:46 test/integration/test_tree.py::TestTree::test_marshal_images_user_pixels PASSED [ 76%]
11:21:48 test/integration/test_tree.py::TestTree::test_marshal_images_thumb_version[thumb0] PASSED [ 76%]
11:21:51 test/integration/test_tree.py::TestTree::test_marshal_images_thumb_version[thumb1] PASSED [ 76%]
11:21:57 test/integration/test_tree.py::TestTree::test_marshal_images_another_user PASSED [ 77%]
11:21:59 test/integration/test_tree.py::TestTree::test_marshal_images_another_group PASSED [ 77%]
11:22:02 test/integration/test_tree.py::TestTree::test_marshal_images_all_groups PASSED [ 77%]
11:22:07 test/integration/test_tree.py::TestTree::test_marshal_images_all_users PASSED [ 77%]
11:22:13 test/integration/test_tree.py::TestTree::test_marshal_images_all_groups_all_users PASSED [ 78%]
11:22:15 test/integration/test_tree.py::TestTree::test_marshal_images_dataset PASSED [ 78%]
11:22:18 test/integration/test_tree.py::TestTree::test_marshal_images_dataset_no_pixels PASSED [ 78%]
11:22:21 test/integration/test_tree.py::TestTree::test_marshal_images_dataset_date PASSED [ 78%]
11:22:27 test/integration/test_tree.py::TestTree::test_marshal_images_dataset_crosslink PASSED [ 79%]
11:22:32 test/integration/test_tree.py::TestTree::test_marshal_images_share PASSED [ 79%]
11:22:35 test/integration/test_tree.py::TestTree::test_marshal_screens_no_results PASSED [ 79%]
11:22:37 test/integration/test_tree.py::TestTree::test_marshal_screens_user PASSED [ 79%]
11:22:43 test/integration/test_tree.py::TestTree::test_marshal_screens_another_user PASSED [ 80%]
11:22:45 test/integration/test_tree.py::TestTree::test_marshal_screens_another_group PASSED [ 80%]
11:22:48 test/integration/test_tree.py::TestTree::test_marshal_screens_all_groups PASSED [ 80%]
11:22:53 test/integration/test_tree.py::TestTree::test_marshal_screens_all_users PASSED [ 80%]
11:22:59 test/integration/test_tree.py::TestTree::test_marshal_screens_all_groups_all_users PASSED [ 80%]
11:23:01 test/integration/test_tree.py::TestTree::test_marshal_plates_no_results PASSED [ 81%]
11:23:04 test/integration/test_tree.py::TestTree::test_marshal_plates_user PASSED [ 81%]
11:23:09 test/integration/test_tree.py::TestTree::test_marshal_plates_another_user PASSED [ 81%]
11:23:12 test/integration/test_tree.py::TestTree::test_marshal_plates_another_group PASSED [ 81%]
11:23:15 test/integration/test_tree.py::TestTree::test_marshal_plates_all_groups PASSED [ 82%]
11:23:20 test/integration/test_tree.py::TestTree::test_marshal_plates_all_users PASSED [ 82%]
11:23:25 test/integration/test_tree.py::TestTree::test_marshal_plates_all_groups_all_users PASSED [ 82%]
11:23:28 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_no_results PASSED [ 82%]
11:23:30 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_user PASSED [ 83%]
11:23:36 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_another_user PASSED [ 83%]
11:23:38 test/integration/test_tree.py::TestTree::test_marshal_plate_acquisitions_another_group PASSED [ 83%]
11:23:41 test/integration/test_tree.py::TestTree::test_marshal_orphaned_no_results PASSED [ 83%]
11:23:44 test/integration/test_tree.py::TestTree::test_marshal_orphaned PASSED [ 83%]
11:23:49 test/integration/test_tree.py::TestTree::test_marshal_orphaned_another_user PASSED [ 84%]
11:23:51 test/integration/test_tree.py::TestTree::test_marshal_orphaned_another_group PASSED [ 84%]
11:23:54 test/integration/test_tree.py::TestTree::test_marshal_orphaned_all_groups PASSED [ 84%]
11:23:57 test/integration/test_tree.py::TestTree::test_marshal_tags_no_results PASSED [ 84%]
11:24:02 test/integration/test_tree.py::TestTree::test_marshal_tags_user PASSED [ 85%]
11:24:07 test/integration/test_tree.py::TestTree::test_marshal_tags_another_user PASSED [ 85%]
11:24:10 test/integration/test_tree.py::TestTree::test_marshal_tags_another_group PASSED [ 85%]
11:24:15 test/integration/test_tree.py::TestTree::test_marshal_tags_all_groups PASSED [ 85%]
11:24:21 test/integration/test_tree.py::TestTree::test_marshal_tags_all_users PASSED [ 86%]
11:24:26 test/integration/test_tree.py::TestTree::test_marshal_tags_all_groups_all_users PASSED [ 86%]
11:24:31 test/integration/test_tree.py::TestTree::test_marshal_tags_orphaned PASSED [ 86%]
11:24:37 test/integration/test_tree.py::TestTree::test_marshal_tags_tagset PASSED [ 86%]
11:24:39 test/integration/test_tree.py::TestTree::test_marshal_tagged_no_results PASSED [ 86%]
11:24:45 test/integration/test_tree.py::TestTree::test_marshal_tagged_user PASSED [ 87%]
11:24:50 test/integration/test_tree.py::TestTree::test_marshal_tagged_perms PASSED [ 87%]
11:24:53 test/integration/test_tree.py::TestTree::test_marshal_tagged_image_pixels PASSED [ 87%]
11:24:59 test/integration/test_tree.py::TestTree::test_marshal_shares_user PASSED [ 87%]
11:25:04 test/integration/test_tree.py::TestTree::test_marshal_shares_another_user PASSED [ 88%]
11:25:09 test/integration/test_tree.py::TestTree::test_marshal_shares_user_owned PASSED [ 88%]
11:25:15 test/integration/test_tree.py::TestTree::test_marshal_shares_another_user_owned PASSED [ 88%]
11:25:20 test/integration/test_tree.py::TestTree::test_marshal_discussions_user PASSED [ 88%]
11:25:25 test/integration/test_tree.py::TestTree::test_marshal_discussions_another_user PASSED [ 89%]
11:25:31 test/integration/test_tree.py::TestTree::test_marshal_discussions_user_owned PASSED [ 89%]
11:25:36 test/integration/test_tree.py::TestTree::test_marshal_discussions_another_user_owned PASSED [ 89%]
11:25:44 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_single_tag PASSED [ 89%]
11:25:50 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_single_tag_userB PASSED [ 90%]
11:25:55 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_twin_tags_userA_userB PASSED [ 90%]
11:26:01 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_twin_tags_projects PASSED [ 90%]
11:26:06 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_tags_comments_project PASSED [ 90%]
11:26:09 test/integration/test_tree_annotations.py::TestTreeAnnotations::test_filter_by_namespace PASSED [ 90%]
11:26:19 test/integration/test_webadmin.py::TestUserSettings::test_user_settings_page PASSED [ 91%]
11:26:22 test/integration/test_webadmin.py::TestUserSettings::test_edit_settings PASSED [ 91%]
11:26:29 test/integration/test_webadmin.py::TestExperimenters::test_create_experimenter_roles[user] PASSED [ 91%]
11:26:33 test/integration/test_webadmin.py::TestExperimenters::test_create_experimenter_roles[restricted_administrator] PASSED [ 91%]
11:26:38 test/integration/test_webadmin.py::TestExperimenters::test_create_experimenter_roles[administrator] PASSED [ 92%]
11:26:43 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field0] PASSED [ 92%]
11:26:49 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field1] PASSED [ 92%]
11:26:54 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field2] PASSED [ 92%]
11:27:00 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field3] PASSED [ 93%]
11:27:06 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field4] PASSED [ 93%]
11:27:11 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field5] PASSED [ 93%]
11:27:16 test/integration/test_webadmin.py::TestExperimenters::test_required_fields[required_field6] PASSED [ 93%]
11:27:21 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege0] PASSED [ 93%]
11:27:25 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege1] PASSED [ 94%]
11:27:30 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege2] PASSED [ 94%]
11:27:34 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege3] PASSED [ 94%]
11:27:38 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege4] PASSED [ 94%]
11:27:43 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege5] PASSED [ 95%]
11:27:47 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege6] PASSED [ 95%]
11:27:51 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege7] PASSED [ 95%]
11:27:56 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege8] PASSED [ 95%]
11:28:00 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin[privilege9] PASSED [ 96%]
11:28:07 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges0] PASSED [ 96%]
11:28:14 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges1] PASSED [ 96%]
11:28:22 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges2] PASSED [ 96%]
11:28:29 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges3] PASSED [ 96%]
11:28:36 test/integration/test_webadmin.py::TestExperimenters::test_create_restricted_admin_form[privileges4] PASSED [ 97%]
11:28:49 test/integration/test_webadmin.py::TestExperimenters::test_restricted_admin_create_edit_user PASSED [ 97%]
11:29:03 test/integration/test_webadmin.py::TestGroups::test_new_group_form[privileges0] PASSED [ 97%]
11:29:16 test/integration/test_webadmin.py::TestGroups::test_new_group_form[privileges1] PASSED [ 97%]
11:29:29 test/integration/test_webadmin.py::TestGroups::test_new_group_form[privileges2] PASSED [ 98%]
11:29:37 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions0] PASSED [ 98%]
11:29:46 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions1] PASSED [ 98%]
11:29:54 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions2] PASSED [ 98%]
11:30:03 test/integration/test_webadmin.py::TestGroups::test_create_group_permissions[permissions3] PASSED [ 99%]
11:30:09 test/integration/test_webadmin.py::TestGroups::test_required_fields[required_field0] PASSED [ 99%]
11:30:16 test/integration/test_webadmin.py::TestGroups::test_required_fields[required_field1] PASSED [ 99%]
11:31:03 test/integration/test_webadmin.py::TestGroups::test_validation_errors PASSED [ 99%]
11:31:14 test/integration/test_webadmin.py::TestGroups::test_save_experimenter PASSED [100%]
11:31:14 =============================== warnings summary ===============================
11:31:14 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
11:31:14 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
11:31:14 import sys, string, imp, os, threading, warnings, datetime
11:31:14 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
11:31:14 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
11:31:14 warnings.warn(
11:31:14 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
11:31:14 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
11:31:14 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
11:31:14 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
11:31:14 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
11:31:14 from pkg_resources import DistributionNotFound, get_distribution
11:31:14 OmeroWeb/test/integration/test_annotate.py: 69 warnings
11:31:14 OmeroWeb/test/integration/test_api_containers.py: 177 warnings
11:31:14 OmeroWeb/test/integration/test_api_errors.py: 19 warnings
11:31:14 OmeroWeb/test/integration/test_api_experimenters_groups.py: 57 warnings
11:31:14 OmeroWeb/test/integration/test_api_images.py: 13 warnings
11:31:14 OmeroWeb/test/integration/test_api_login.py: 8 warnings
11:31:14 OmeroWeb/test/integration/test_api_projects.py: 87 warnings
11:31:14 OmeroWeb/test/integration/test_api_rois.py: 25 warnings
11:31:14 OmeroWeb/test/integration/test_api_wells.py: 20 warnings
11:31:14 OmeroWeb/test/integration/test_chgrp.py: 43 warnings
11:31:14 OmeroWeb/test/integration/test_chown.py: 16 warnings
11:31:14 OmeroWeb/test/integration/test_config.py: 5 warnings
11:31:14 OmeroWeb/test/integration/test_containers.py: 19 warnings
11:31:14 OmeroWeb/test/integration/test_csrf.py: 38 warnings
11:31:14 OmeroWeb/test/integration/test_decorators.py: 5 warnings
11:31:14 OmeroWeb/test/integration/test_download.py: 28 warnings
11:31:14 OmeroWeb/test/integration/test_groups_users.py: 10 warnings
11:31:14 OmeroWeb/test/integration/test_histogram.py: 7 warnings
11:31:14 OmeroWeb/test/integration/test_history.py: 12 warnings
11:31:14 OmeroWeb/test/integration/test_links.py: 20 warnings
11:31:14 OmeroWeb/test/integration/test_login.py: 13 warnings
11:31:14 OmeroWeb/test/integration/test_marshal.py: 6 warnings
11:31:14 OmeroWeb/test/integration/test_metadata.py: 16 warnings
11:31:14 OmeroWeb/test/integration/test_plategrid.py: 29 warnings
11:31:14 OmeroWeb/test/integration/test_rendering.py: 66 warnings
11:31:14 OmeroWeb/test/integration/test_scripts.py: 38 warnings
11:31:14 OmeroWeb/test/integration/test_show.py: 4 warnings
11:31:14 OmeroWeb/test/integration/test_table.py: 110 warnings
11:31:14 OmeroWeb/test/integration/test_tags.py: 26 warnings
11:31:14 OmeroWeb/test/integration/test_thumbnails.py: 68 warnings
11:31:14 OmeroWeb/test/integration/test_webadmin.py: 104 warnings
11:31:14 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/core/serializers/base.py:22: RemovedInDjango50Warning: PickleSerializer is deprecated due to its security risk. Use JSONSerializer instead.
11:31:14 warnings.warn(
11:31:14 OmeroWeb/test/integration/test_api_containers.py: 67 warnings
11:31:14 OmeroWeb/test/integration/test_api_images.py: 6 warnings
11:31:14 OmeroWeb/test/integration/test_api_wells.py: 24 warnings
11:31:14 OmeroWeb/test/integration/test_containers.py: 2 warnings
11:31:14 OmeroWeb/test/integration/test_csrf.py: 5 warnings
11:31:14 OmeroWeb/test/integration/test_download.py: 9 warnings
11:31:14 OmeroWeb/test/integration/test_histogram.py: 2 warnings
11:31:14 OmeroWeb/test/integration/test_metadata.py: 2 warnings
11:31:14 OmeroWeb/test/integration/test_rendering.py: 17 warnings
11:31:14 OmeroWeb/test/integration/test_scripts.py: 30 warnings
11:31:14 OmeroWeb/test/integration/test_thumbnails.py: 23 warnings
11:31:14 OmeroWeb/test/integration/test_tree.py: 20 warnings
11:31:14 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1093: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
11:31:14 converted_plane = byte_swapped_plane.tostring()
11:31:14 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_marshal_type
11:31:14 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_marshal/__init__.py:44: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:31:14 logger.warn('Requested unknown decoder %s' % t, exc_info=True)
11:31:14 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_marshal_validation
11:31:14 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_marshal/__init__.py:97: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:31:14 logger.warn('Requested unknown decoder %s' % t, exc_info=True)
11:31:14 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_security_violation
11:31:14 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_validation_exception
11:31:14 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_project_validation
11:31:14 OmeroWeb/test/integration/test_api_projects.py::TestProjects::test_project_delete
11:31:14 OmeroWeb/test/integration/test_api_rois.py::TestContainers::test_roi_delete
11:31:14 OmeroWeb/test/integration/test_links.py::TestLinks::test_link_datasets_images
11:31:14 OmeroWeb/test/integration/test_links.py::TestLinks::test_link_datasets_images
11:31:14 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4810: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:31:14 logger.warn("%s on %s to <%s> %s(%r, %r)",
11:31:14 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[True]
11:31:14 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[False]
11:31:14 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_not_file
11:31:14 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omeroweb/testlib/__init__.py:478: DeprecationWarning: This method is deprecated as of OMERO 5.4.0. Use get
11:31:14 warnings.warn(
11:31:14 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:31:14 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:31:14 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:31:14 OmeroWeb/test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_incomplete_request
11:31:14 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:8856: DeprecationWarning: setActiveChannels() is deprecated in OMERO 5.4.0.Use set_active_channels
11:31:14 warnings.warn("setActiveChannels() is deprecated in OMERO 5.4.0."
11:31:14 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:31:14 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:31:14 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:31:14 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:31:14 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:9118: DeprecationWarning: Deprecated in 5.4.0. Use setChannelInverted()
11:31:14 warnings.warn("Deprecated in 5.4.0. Use setChannelInverted()",
11:31:14 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
11:31:14 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/target/reports/integration/junit-results.xml -
11:31:14 =============== 430 passed, 1389 warnings in 1351.19s (0:22:31) ================
11:31:14 !! 10/03/24 12:31:14.848 error: 8 communicators not destroyed during global destruction.
11:31:14
11:31:14 BUILD SUCCESSFUL
11:31:14 Total time: 22 minutes 33 seconds
11:31:14 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroPy/build.xml integration -DMARK=broken -Dtestreports.dir=target/reports/broken
11:31:14 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
11:31:15 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/build.xml
11:31:15 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
11:31:15 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
11:31:15
11:31:15 python-integration:
11:31:15 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/broken
11:31:16 ============================= test session starts ==============================
11:31:16 platform linux -- Python 3.9.18, pytest-8.3.3, pluggy-1.5.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3
11:31:16 cachedir: .pytest_cache
11:31:16 django: version: 4.2.16, settings: omeroweb.settings (from ini)
11:31:16 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
11:31:16 configfile: pytest.ini
11:31:16 plugins: xdist-3.6.1, mock-3.14.0, django-4.9.0
11:31:17 collecting ... collected 2061 items / 2025 deselected / 36 selected
11:31:20 test/integration/clitest/test_fs.py::TestFS::testRenameAdminOnly FAILED [ 2%]
11:31:25 test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Dataset-test.fake--d] FAILED [ 5%]
11:31:27 test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] FAILED [ 8%]
11:31:29 test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory FAILED [ 11%]
11:31:46 test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript FAILED [ 13%]
11:31:51 test/integration/gatewaytest/test_performance.py::TestPerformance::testListFileAnnotations FAILED [ 16%]
11:31:52 test/integration/gatewaytest/test_user.py::TestUser::testCrossGroupRead FAILED [ 19%]
11:31:56 test/integration/scriptstest/test_ping.py::TestPing::testProcessCallback FAILED [ 22%]
11:32:11 test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetGroupScripts FAILED [ 25%]
11:32:14 test/integration/tablestest/test_service.py::TestTables::test2098 FAILED [ 27%]
11:32:14 test/integration/tablestest/test_service.py::TestTables::testReadOnlyFile FAILED [ 30%]
11:32:14 test/integration/tablestest/test_service.py::TestTables::testReadEqual FAILED [ 33%]
11:32:14 test/integration/tablestest/test_service.py::TestTables::testReadOutOfRange FAILED [ 36%]
11:32:19 test/integration/test_admin.py::TestAdmin::testChangePasswordWhenUnset FAILED [ 38%]
11:32:22 test/integration/test_admin.py::TestAdmin::test9193 FAILED [ 41%]
11:32:25 test/integration/test_files.py::TestFiles::testUploadDifferentSizeTicket2337 FAILED [ 44%]
11:32:30 test/integration/test_ishare.py::TestIShare::test1172 FAILED [ 47%]
11:32:33 test/integration/test_itimeline.py::TestITimeline::test1225 FAILED [ 50%]
11:32:36 test/integration/test_permissions.py::TestPermissions::test3136 FAILED [ 52%]
11:32:39 test/integration/test_permissions.py::TestPermissions::testSaveWithNegOneExplicit FAILED [ 55%]
11:32:41 test/integration/test_permissions.py::TestPermissions::testSaveWithNegBadLink FAILED [ 58%]
11:32:44 test/integration/test_permissions.py::TestPermissions::testSaveBadLink FAILED [ 61%]
11:32:47 test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadCorrectGroupAndUser FAILED [ 63%]
11:32:49 test/integration/test_rawfilestore.py::TestRFS::testTicket1961Basic FAILED [ 66%]
11:32:50 test/integration/test_rawfilestore.py::TestRFS::testTicket1961WithKillSession FAILED [ 69%]
11:32:50 test/integration/test_rawfilestore.py::TestRFS::testTicket2161Save FAILED [ 72%]
11:32:55 test/integration/test_rawfilestore.py::TestRFS::testNoWrite FAILED [ 75%]
11:32:58 test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testFailedWriteNoFile FAILED [ 77%]
11:33:10 test/integration/test_scripts.py::TestScripts::testParseErrorTicket2185 PASSED [ 80%]
11:33:25 test/integration/test_scripts.py::TestScripts::testAutoFillTicket2326 FAILED [ 83%]
11:33:29 test/integration/test_scripts.py::TestScripts::testParamLoadingPerformanceTicket2285 FAILED [ 86%]
11:33:44 test/integration/test_scripts.py::TestScripts::test3527 FAILED [ 88%]
11:33:50 test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithNoCtx FAILED [ 91%]
11:34:09 test/integration/test_tickets2000.py::TestTickets2000::test1184 FAILED [ 94%]
11:34:21 test/integration/test_tickets4000.py::TestTickets4000::test3138 PASSED [ 97%]
11:34:26 test/integration/test_tickets6000.py::TestTickets6000::test5684 PASSED [100%]
11:34:26 =================================== FAILURES ===================================
11:34:26 __________________________ TestFS.testRenameAdminOnly __________________________
11:34:26 self = <test.integration.clitest.test_fs.TestFS object at 0x7fd4d7573670>
11:34:26 capsys = <_pytest.capture.CaptureFixture object at 0x7fd531fcfc10>
11:34:26 @pytest.mark.broken(reason="fs rename is temporarily disabled")
11:34:26 def testRenameAdminOnly(self, capsys):
11:34:26 """Test fs rename is admin-only"""
11:34:26 self.args += ["rename", "Fileset:1"]
11:34:26 with pytest.raises(NonZeroReturnCode):
11:34:26 self.cli.invoke(self.args, strict=True)
11:34:26 out, err = capsys.readouterr()
11:34:26 > assert err.endswith("SecurityViolation: Admins only!\n")
11:34:26 E AssertionError: assert False
11:34:26 E + where False = <built-in method endswith of str object at 0x7fd53e5b5ea0>('SecurityViolation: Admins only!\n')
11:34:26 E + where <built-in method endswith of str object at 0x7fd53e5b5ea0> = 'disabled since OMERO 5.4.7 due to Pixels.path bug\n'.endswith
11:34:26 test/integration/clitest/test_fs.py:118: AssertionError
11:34:26 _________ TestImport.testTargetInDifferentGroup[Dataset-test.fake--d] __________
11:34:26 self = <test.integration.clitest.test_import.TestImport object at 0x7fd4d7346d60>
11:34:26 container = 'Dataset', filename = 'test.fake', arg = '-d'
11:34:26 tmpdir = local('/tmp/pytest-of-omero/pytest-5/testTargetInDifferentGroup_Dat0')
11:34:26 capfd = <_pytest.capture.CaptureFixture object at 0x7fd5319580a0>
11:34:26 @pytest.mark.broken(reason="needs omero.group setting")
11:34:26 @pytest.mark.parametrize("container,filename,arg", target_fixtures)
11:34:26 def testTargetInDifferentGroup(self, container, filename, arg,
11:34:26 tmpdir, capfd):
11:34:26 new_group = self.new_group(experimenters=[self.user])
11:34:26 self.sf.getAdminService().getEventContext() # Refresh
11:34:26 target = eval("omero.model."+container+"I")()
11:34:26 target.name = rstring('testTargetInDifferentGroup')
11:34:26 target = self.update.saveAndReturnObject(
11:34:26 target, {"omero.group": str(new_group.id.val)})
11:34:26 assert target.details.group.id.val == new_group.id.val
11:34:26 fakefile = tmpdir.join(filename)
11:34:26 fakefile.write('')
11:34:26 self.args += [str(fakefile)]
11:34:26 self.args += [arg, '%s' % target.id.val]
11:34:26 # Invoke CLI import command and retrieve stdout/stderr
11:34:26 > o, e = self.do_import(capfd)
11:34:26 test/integration/clitest/test_import.py:1216:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 test/integration/clitest/test_import.py:150: in do_import
11:34:26 self.cli.invoke(self.args, strict=True)
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:34:26 self.assertRC()
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = <omero.cli.CLI object at 0x7fd5254222e0>
11:34:26 def assertRC(self):
11:34:26 if self.rv != 0:
11:34:26 > raise NonZeroReturnCode(self.rv, "assert failed")
11:34:26 E omero.cli.NonZeroReturnCode: assert failed
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:34:26 ----------------------------- Captured stdout call -----------------------------
11:34:26 OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOO
11:34:26 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
11:34:26 2024-10-03 12:31:23,729 236 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.5-SNAPSHOT
11:34:26 2024-10-03 12:31:23,744 251 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 4bd8376b0975590496f8da746fa90970cb068692 date: 3 October 2024
11:34:26 2024-10-03 12:31:23,792 299 [ main] INFO formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
11:34:26 2024-10-03 12:31:24,098 605 [ main] INFO ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
11:34:26 2024-10-03 12:31:24,161 668 [ main] INFO ome.formats.importer.ImportCandidates - 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 61ms. (62ms total) [0 unknowns]
11:34:26 2024-10-03 12:31:24,193 700 [ main] INFO ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:14064
11:34:26 2024-10-03 12:31:24,540 1047 [ main] INFO ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
11:34:26 2024-10-03 12:31:24,728 1235 [ main] INFO ome.formats.OMEROMetadataStoreClient - Pinging session every 300s.
11:34:26 2024-10-03 12:31:24,733 1240 [ main] INFO ome.formats.OMEROMetadataStoreClient - Server: 5.6.3
11:34:26 2024-10-03 12:31:24,733 1240 [ main] INFO ome.formats.OMEROMetadataStoreClient - Client: 5.7.5-SNAPSHOT
11:34:26 2024-10-03 12:31:24,733 1240 [ main] INFO ome.formats.OMEROMetadataStoreClient - Java Version: 11.0.24
11:34:26 2024-10-03 12:31:24,733 1240 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Name: Linux
11:34:26 2024-10-03 12:31:24,733 1240 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
11:34:26 2024-10-03 12:31:24,733 1240 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Version: 5.14.0-427.37.1.el9_4.x86_64
11:34:26 2024-10-03 12:31:25,050 1557 [ main] INFO ome.formats.importer.ImportConfig - Using import target: Dataset:1351
11:34:26 2024-10-03 12:31:25,060 1567 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Could not load target: ome.formats.importer.targets.ModelImportTarget@4fb5e4e8
11:34:26 2024-10-03 12:31:25,060 1567 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Error on import
11:34:26 java.lang.RuntimeException: Failed to load target
11:34:26 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:351)
11:34:26 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:328)
11:34:26 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
11:34:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
11:34:26 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
11:34:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
11:34:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 Caused by: omero.SecurityViolation: null
11:34:26 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
11:34:26 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
11:34:26 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
11:34:26 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
11:34:26 at java.base/java.lang.Class.newInstance(Class.java:584)
11:34:26 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
11:34:26 at IceInternal.BasicStream.access$300(BasicStream.java:14)
11:34:26 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
11:34:26 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
11:34:26 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
11:34:26 at omero.api.IQueryPrxHelper.end_get(IQueryPrxHelper.java:2000)
11:34:26 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1872)
11:34:26 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1859)
11:34:26 at ome.formats.importer.targets.ModelImportTarget.load(ModelImportTarget.java:219)
11:34:26 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:334)
11:34:26 ... 7 common frames omitted
11:34:26 2024-10-03 12:31:25,062 1569 [2-thread-1] INFO ome.formats.importer.ImportLibrary - Exiting on error
11:34:26 ==> Summary
11:34:26 0 files uploaded, 0 filesets created, 0 images imported, 0 errors in 0:00:00.239
11:34:26 ------------------------------ Captured log call -------------------------------
11:34:26 INFO omero.util.Resources:__init__.py:652 Starting
11:34:26 INFO omero.util.Resources:__init__.py:669 Halted
11:34:26 _ TestImport.testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] _
11:34:26 self = <test.integration.clitest.test_import.TestImport object at 0x7fd4d7346ee0>
11:34:26 container = 'Screen'
11:34:26 filename = 'SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake'
11:34:26 arg = '-r'
11:34:26 tmpdir = local('/tmp/pytest-of-omero/pytest-5/testTargetInDifferentGroup_Scr0')
11:34:26 capfd = <_pytest.capture.CaptureFixture object at 0x7fd531958ac0>
11:34:26 @pytest.mark.broken(reason="needs omero.group setting")
11:34:26 @pytest.mark.parametrize("container,filename,arg", target_fixtures)
11:34:26 def testTargetInDifferentGroup(self, container, filename, arg,
11:34:26 tmpdir, capfd):
11:34:26 new_group = self.new_group(experimenters=[self.user])
11:34:26 self.sf.getAdminService().getEventContext() # Refresh
11:34:26 target = eval("omero.model."+container+"I")()
11:34:26 target.name = rstring('testTargetInDifferentGroup')
11:34:26 target = self.update.saveAndReturnObject(
11:34:26 target, {"omero.group": str(new_group.id.val)})
11:34:26 assert target.details.group.id.val == new_group.id.val
11:34:26 fakefile = tmpdir.join(filename)
11:34:26 fakefile.write('')
11:34:26 self.args += [str(fakefile)]
11:34:26 self.args += [arg, '%s' % target.id.val]
11:34:26 # Invoke CLI import command and retrieve stdout/stderr
11:34:26 > o, e = self.do_import(capfd)
11:34:26 test/integration/clitest/test_import.py:1216:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 test/integration/clitest/test_import.py:150: in do_import
11:34:26 self.cli.invoke(self.args, strict=True)
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1211: in invoke
11:34:26 self.assertRC()
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = <omero.cli.CLI object at 0x7fd5254222e0>
11:34:26 def assertRC(self):
11:34:26 if self.rv != 0:
11:34:26 > raise NonZeroReturnCode(self.rv, "assert failed")
11:34:26 E omero.cli.NonZeroReturnCode: assert failed
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero/cli.py:1200: NonZeroReturnCode
11:34:26 ----------------------------- Captured stdout call -----------------------------
11:34:26 OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOO
11:34:26 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
11:34:26 2024-10-03 12:31:25,825 241 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.5-SNAPSHOT
11:34:26 2024-10-03 12:31:25,842 258 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 4bd8376b0975590496f8da746fa90970cb068692 date: 3 October 2024
11:34:26 2024-10-03 12:31:25,891 307 [ main] INFO formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
11:34:26 2024-10-03 12:31:26,204 620 [ main] INFO ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
11:34:26 2024-10-03 12:31:26,349 765 [ main] INFO ome.formats.importer.ImportCandidates - 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 143ms. (145ms total) [0 unknowns]
11:34:26 2024-10-03 12:31:26,381 797 [ main] INFO ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:14064
11:34:26 2024-10-03 12:31:26,724 1140 [ main] INFO ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
11:34:26 2024-10-03 12:31:26,912 1328 [ main] INFO ome.formats.OMEROMetadataStoreClient - Pinging session every 300s.
11:34:26 2024-10-03 12:31:26,918 1334 [ main] INFO ome.formats.OMEROMetadataStoreClient - Server: 5.6.3
11:34:26 2024-10-03 12:31:26,918 1334 [ main] INFO ome.formats.OMEROMetadataStoreClient - Client: 5.7.5-SNAPSHOT
11:34:26 2024-10-03 12:31:26,918 1334 [ main] INFO ome.formats.OMEROMetadataStoreClient - Java Version: 11.0.24
11:34:26 2024-10-03 12:31:26,918 1334 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Name: Linux
11:34:26 2024-10-03 12:31:26,918 1334 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
11:34:26 2024-10-03 12:31:26,918 1334 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Version: 5.14.0-427.37.1.el9_4.x86_64
11:34:26 2024-10-03 12:31:27,238 1654 [ main] INFO ome.formats.importer.ImportConfig - Using import target: Screen:237
11:34:26 2024-10-03 12:31:27,248 1664 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Could not load target: ome.formats.importer.targets.ModelImportTarget@6b79f2c2
11:34:26 2024-10-03 12:31:27,248 1664 [2-thread-1] ERROR ome.formats.importer.ImportLibrary - Error on import
11:34:26 java.lang.RuntimeException: Failed to load target
11:34:26 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:351)
11:34:26 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:328)
11:34:26 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
11:34:26 at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
11:34:26 at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
11:34:26 at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
11:34:26 at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 Caused by: omero.SecurityViolation: null
11:34:26 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
11:34:26 at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
11:34:26 at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
11:34:26 at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
11:34:26 at java.base/java.lang.Class.newInstance(Class.java:584)
11:34:26 at IceInternal.BasicStream.createUserException(BasicStream.java:2785)
11:34:26 at IceInternal.BasicStream.access$300(BasicStream.java:14)
11:34:26 at IceInternal.BasicStream$EncapsDecoder11.throwException(BasicStream.java:3620)
11:34:26 at IceInternal.BasicStream.throwException(BasicStream.java:2291)
11:34:26 at IceInternal.OutgoingAsync.throwUserException(OutgoingAsync.java:399)
11:34:26 at omero.api.IQueryPrxHelper.end_get(IQueryPrxHelper.java:2000)
11:34:26 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1872)
11:34:26 at omero.api.IQueryPrxHelper.get(IQueryPrxHelper.java:1859)
11:34:26 at ome.formats.importer.targets.ModelImportTarget.load(ModelImportTarget.java:219)
11:34:26 at ome.formats.importer.ImportLibrary$1.call(ImportLibrary.java:334)
11:34:26 ... 7 common frames omitted
11:34:26 2024-10-03 12:31:27,250 1666 [2-thread-1] INFO ome.formats.importer.ImportLibrary - Exiting on error
11:34:26 ==> Summary
11:34:26 0 files uploaded, 0 filesets created, 0 images imported, 0 errors in 0:00:00.244
11:34:26 ------------------------------ Captured log call -------------------------------
11:34:26 INFO omero.util.Resources:__init__.py:652 Starting
11:34:26 INFO omero.util.Resources:__init__.py:669 Halted
11:34:26 ________________________ TestHistory.testCreateHistory _________________________
11:34:26 self = <test.integration.gatewaytest.test_multi_group.TestHistory object at 0x7fd4d6effaf0>
11:34:26 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7fd531933b80>
11:34:26 @pytest.mark.broken(ticket="11494")
11:34:26 def testCreateHistory(self, gatewaywrapper):
11:34:26 # Login as user...
11:34:26 gatewaywrapper.doLogin(dbhelpers.USERS['history_test_user'])
11:34:26 userId = gatewaywrapper.gateway.getEventContext().userId
11:34:26 uuid = gatewaywrapper.gateway.getEventContext().sessionUuid
11:34:26 default_groupId = gatewaywrapper.gateway.getEventContext().groupId
11:34:26 start = int(round(time.time() * 1000)) - 1000
11:34:26 # Create Dataset in 'default' group
11:34:26 update = gatewaywrapper.gateway.getUpdateService()
11:34:26 new_ds = omero.model.DatasetI()
11:34:26 dataset_name = "history_test_%s" % uuid
11:34:26 new_ds.name = rstring(dataset_name)
11:34:26 new_ds = update.saveAndReturnObject(new_ds)
11:34:26 new_ds_Id = new_ds.id.val
11:34:26 # As Admin, create a second group with this user & upload script
11:34:26 gatewaywrapper.loginAsAdmin()
11:34:26 gid = gatewaywrapper.gateway.createGroup(
11:34:26 "history-test-%s" % uuid, member_Ids=[userId], perms=READWRITE)
11:34:26 # login as User
11:34:26 gatewaywrapper.doLogin(dbhelpers.USERS['history_test_user'])
11:34:26 end = int(round(time.time() * 1000)) + 1000
11:34:26 self.searchHistory(gatewaywrapper.gateway, start, end)
11:34:26 # switch user into new group
11:34:26 switched = gatewaywrapper.gateway.c.sf.setSecurityContext(
11:34:26 omero.model.ExperimenterGroupI(gid, False))
11:34:26 assert switched, "Failed to switch into new group"
11:34:26 # Shouldn't be able to access Dataset...
11:34:26 > self.searchHistory(gatewaywrapper.gateway, start, end)
11:34:26 test/integration/gatewaytest/test_multi_group.py:96:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = <test.integration.gatewaytest.test_multi_group.TestHistory object at 0x7fd4d6effaf0>
11:34:26 gateway = <omero.gateway._BlitzGateway object at 0x7fd531834ac0>
11:34:26 start = 1727955087506, end = 1727955089648, dtype = 'Dataset'
11:34:26 def searchHistory(self, gateway, start, end, dtype="Dataset"):
11:34:26 tm = gateway.getTimelineService()
11:34:26 count = tm.countByPeriod([dtype], rtime(int(start)),
11:34:26 rtime(int(end)), None, gateway.SERVICE_OPTS)
11:34:26 data = tm.getByPeriod([dtype], rtime(int(start)), rtime(int(end)),
11:34:26 None, True, gateway.SERVICE_OPTS)
11:34:26 logs = tm.getEventLogsByPeriod(rtime(start), rtime(end), None,
11:34:26 gateway.SERVICE_OPTS)
11:34:26 entityType = 'ome.model.containers.%s' % dtype
11:34:26 filteredLogs = [{'id': i.entityId.val, 'action': i.action.val}
11:34:26 for i in logs if i.entityType.val == entityType]
11:34:26 typeCount = count[dtype]
11:34:26 dataCount = len(data[dtype])
11:34:26 logCount = len(filteredLogs)
11:34:26 assert typeCount == dataCount, \
11:34:26 "Period count should match number of objects"
11:34:26 > assert logCount == dataCount, \
11:34:26 "Logs count should match number of objects"
11:34:26 E AssertionError: Logs count should match number of objects
11:34:26 E assert 1 == 0
11:34:26 test/integration/gatewaytest/test_multi_group.py:58: AssertionError
11:34:26 ------------------------------ Captured log setup ------------------------------
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=95a5c275-9725-4a36-ba75-b4efef8a62ac)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=bc6f8cc3-2c7f-480f-aa0a-db5d0c5eb13a)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=776b782b-4f81-4595-903f-539dbb4646d0)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=7b91945f-32e6-45ee-82c3-7f91d0145743)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=10d2c940-43f2-4b94-a98a-a12d65529361)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=4ae86593-584e-4690-8c5f-df52ddcfd140)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=da257889-2dfd-49bc-a53d-0ceb3a946554)
11:34:26 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <6154af9d-0e87-4074-b09b-180b4005df81omero.api.IAdmin> lookupExperimenter(('history_test_user',), {})
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
11:34:26 return self.f(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 824, in lookupExperimenter
11:34:26 return _M_omero.api.IAdmin._op_lookupExperimenter.invoke(self, ((name, ), _ctx))
11:34:26 omero.ApiUsageException: exception ::omero::ApiUsageException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ApiUsageException: No such experimenter: history_test_user
11:34:26 at ome.logic.AdminImpl.lookupExperimenter(AdminImpl.java:325)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor604.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy91.lookupExperimenter(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor604.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy91.lookupExperimenter(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor3374.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 at ome.services.blitz.impl.AdminI.lookupExperimenter_async(AdminI.java:256)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor3373.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy92.lookupExperimenter_async(Unknown Source)
11:34:26 at omero.api._IAdminTie.lookupExperimenter_async(_IAdminTie.java:264)
11:34:26 at omero.api._IAdminDisp.___lookupExperimenter(_IAdminDisp.java:924)
11:34:26 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2345)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ApiUsageException
11:34:26 message = No such experimenter: history_test_user
11:34:26 }
11:34:26 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <6154af9d-0e87-4074-b09b-180b4005df81omero.api.IAdmin> lookupGroup(('rw_history',), {})
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
11:34:26 return self.f(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 937, in lookupGroup
11:34:26 return _M_omero.api.IAdmin._op_lookupGroup.invoke(self, ((name, ), _ctx))
11:34:26 omero.ApiUsageException: exception ::omero::ApiUsageException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ApiUsageException: No such group: rw_history
11:34:26 at ome.logic.AdminImpl.lookupGroup(AdminImpl.java:366)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor485.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy91.lookupGroup(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor485.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy91.lookupGroup(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor539.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 at ome.services.blitz.impl.AdminI.lookupGroup_async(AdminI.java:266)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor538.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy92.lookupGroup_async(Unknown Source)
11:34:26 at omero.api._IAdminTie.lookupGroup_async(_IAdminTie.java:276)
11:34:26 at omero.api._IAdminDisp.___lookupGroup(_IAdminDisp.java:990)
11:34:26 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2353)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ApiUsageException
11:34:26 message = No such group: rw_history
11:34:26 }
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 ------------------------------ Captured log call -------------------------------
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=c7ad6d2d-8d2d-494f-8d78-f7b9635eddf7)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=c931188c-4d2f-4ed9-b1ad-2facd9dd271e)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=a97e2d5d-5e39-4c79-9804-3c2c5495e882)
11:34:26 --------------------------- Captured stderr teardown ---------------------------
11:34:26 **
11:34:26 ---------------------------- Captured log teardown -----------------------------
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=cb27a4d0-fa0c-4a1c-9e96-81bb1fe4c8f1)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=62f9bad3-e310-443c-8402-1d6acec65840)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=59c8f775-ad3f-4cd0-8465-b49a50447589)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 ___________________________ TestScript.testRunScript ___________________________
11:34:26 self = <test.integration.gatewaytest.test_multi_group.TestScript object at 0x7fd4d6f04040>
11:34:26 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7fd531824cd0>
11:34:26 @pytest.mark.broken(ticket="11610")
11:34:26 def testRunScript(self, gatewaywrapper):
11:34:26 # Login as user...
11:34:26 gatewaywrapper.doLogin(dbhelpers.USERS['script_test_user'])
11:34:26 userId = gatewaywrapper.gateway.getEventContext().userId
11:34:26 uuid = gatewaywrapper.gateway.getEventContext().sessionUuid
11:34:26 default_groupId = gatewaywrapper.gateway.getEventContext().groupId
11:34:26 # Create Dataset in 'default' group
11:34:26 update = gatewaywrapper.gateway.getUpdateService()
11:34:26 new_ds = omero.model.DatasetI()
11:34:26 dataset_name = "script_test_%s" % uuid
11:34:26 new_ds.name = rstring(dataset_name)
11:34:26 new_ds = update.saveAndReturnObject(new_ds)
11:34:26 new_ds_Id = new_ds.id.val
11:34:26 # As Admin, create a second group with this user & upload script
11:34:26 gatewaywrapper.loginAsAdmin()
11:34:26 gid = gatewaywrapper.gateway.createGroup(
11:34:26 "script-test-%s" % uuid, member_Ids=[userId], perms=READWRITE)
11:34:26 SCRIPT = """if True:
11:34:26 import omero.scripts
11:34:26 import omero.rtypes
11:34:26 client = omero.scripts.client("ticket8573", \
11:34:26 omero.scripts.Long("datasetId"), \
11:34:26 omero.scripts.String("datasetName", out=True))
11:34:26 ec = client.sf.getAdminService().getEventContext()
11:34:26 gid = ec.groupId
11:34:26 qs = client.sf.getQueryService()
11:34:26 ds_Id = client.getInput("datasetId").getValue()
11:34:26 print("Running test...") # generate stdout
11:34:26 try:
11:34:26 dataset = qs.find("Dataset", ds_Id)
11:34:26 ds_Name = dataset.name.val
11:34:26 print(ds_Name)
11:34:26 except Exception:
11:34:26 ds_Name = "Not Found"
11:34:26 client.setOutput("gid", omero.rtypes.rlong(gid))
11:34:26 client.setOutput("datasetName", omero.rtypes.rstring(ds_Name))
11:34:26 """
11:34:26 svc = gatewaywrapper.gateway.getScriptService()
11:34:26 scriptID = svc.uploadOfficialScript(
11:34:26 "/test/ticket8573/%s" % uuid, SCRIPT)
11:34:26 # switch user into new group
11:34:26 gatewaywrapper.doLogin(dbhelpers.USERS['script_test_user'])
11:34:26 switched = gatewaywrapper.gateway.c.sf.setSecurityContext(
11:34:26 omero.model.ExperimenterGroupI(gid, False))
11:34:26 assert switched, "Failed to switch into new group"
11:34:26 # Shouldn't be able to access Dataset...
11:34:26 value = gatewaywrapper.gateway.getObject("Dataset", new_ds_Id)
11:34:26 assert value is None
11:34:26 gatewaywrapper.gateway.SERVICE_OPTS.setOmeroGroup(
11:34:26 str(default_groupId))
11:34:26 value = gatewaywrapper.gateway.getObject("Dataset", new_ds_Id)
11:34:26 assert value is not None
11:34:26 # run script
11:34:26 svc = gatewaywrapper.gateway.getScriptService()
11:34:26 > process = svc.runScript(scriptID, {"datasetId": rlong(new_ds_Id)},
11:34:26 None, gatewaywrapper.gateway.SERVICE_OPTS)
11:34:26 test/integration/gatewaytest/test_multi_group.py:188:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4833: in __call__
11:34:26 return self.handle_exception(e, *args, **kwargs)
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4830: in __call__
11:34:26 return self.f(*args, **kwargs)
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = 555e6bd0-8251-4204-b501-5fc4236dfaeb/88dc7add-735a-4b87-8df5-9df5fe0d46bbomero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 scriptID = 5945
11:34:26 inputs = {'datasetId': object #0 (::omero::RLong)
11:34:26 {
11:34:26 _val = 1359
11:34:26 }}
11:34:26 waitSecs = None
11:34:26 _ctx = <ServiceOptsDict: {'omero.client.uuid': '88dc7add-735a-4b87-8df5-9df5fe0d46bb', 'omero.session.uuid': '555e6bd0-8251-4204-b501-5fc4236dfaeb', 'omero.group': '3665'}>
11:34:26 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
11:34:26 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
11:34:26 E omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
11:34:26 E {
11:34:26 E serverStackTrace =
11:34:26 E serverExceptionClass =
11:34:26 E message = No processor available! [0 response(s)]
11:34:26 E processorCount = 0
11:34:26 E }
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: NoProcessorAvailable
11:34:26 ------------------------------ Captured log setup ------------------------------
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=2261c874-c05b-4681-8342-b8df5f4d16f7)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=3c472589-c895-4639-9ed9-31cdb3959ac7)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=879f54d1-f514-420c-9909-3130d987c370)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=24a51709-af4b-4b32-9b96-8647efc2b80d)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=b35ba512-b50e-478b-b6c4-317e2f0349cb)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=2eb488e3-1d4a-4bd1-a9d4-248b69d3b5f3)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=b06a4142-7a84-4092-a63f-27d172dfa148)
11:34:26 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <6b80cd60-3c72-43d3-a7b8-3b7311328706omero.api.IAdmin> lookupExperimenter(('script_test_user',), {})
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
11:34:26 return self.f(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 824, in lookupExperimenter
11:34:26 return _M_omero.api.IAdmin._op_lookupExperimenter.invoke(self, ((name, ), _ctx))
11:34:26 omero.ApiUsageException: exception ::omero::ApiUsageException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ApiUsageException: No such experimenter: script_test_user
11:34:26 at ome.logic.AdminImpl.lookupExperimenter(AdminImpl.java:325)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor604.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy91.lookupExperimenter(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor604.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy91.lookupExperimenter(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor3374.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 at ome.services.blitz.impl.AdminI.lookupExperimenter_async(AdminI.java:256)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor3373.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy92.lookupExperimenter_async(Unknown Source)
11:34:26 at omero.api._IAdminTie.lookupExperimenter_async(_IAdminTie.java:264)
11:34:26 at omero.api._IAdminDisp.___lookupExperimenter(_IAdminDisp.java:924)
11:34:26 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2345)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ApiUsageException
11:34:26 message = No such experimenter: script_test_user
11:34:26 }
11:34:26 WARNING omero.gateway:__init__.py:4810 ApiUsageException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <6b80cd60-3c72-43d3-a7b8-3b7311328706omero.api.IAdmin> lookupGroup(('rw_script',), {})
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
11:34:26 return self.f(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py", line 937, in lookupGroup
11:34:26 return _M_omero.api.IAdmin._op_lookupGroup.invoke(self, ((name, ), _ctx))
11:34:26 omero.ApiUsageException: exception ::omero::ApiUsageException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ApiUsageException: No such group: rw_script
11:34:26 at ome.logic.AdminImpl.lookupGroup(AdminImpl.java:366)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor485.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy91.lookupGroup(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor485.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy91.lookupGroup(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor539.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 at ome.services.blitz.impl.AdminI.lookupGroup_async(AdminI.java:266)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor538.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy92.lookupGroup_async(Unknown Source)
11:34:26 at omero.api._IAdminTie.lookupGroup_async(_IAdminTie.java:276)
11:34:26 at omero.api._IAdminDisp.___lookupGroup(_IAdminDisp.java:990)
11:34:26 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2353)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ApiUsageException
11:34:26 message = No such group: rw_script
11:34:26 }
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 ------------------------------ Captured log call -------------------------------
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=dadf99b9-6d17-455c-bc9e-ca93328dad53)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=b469e8e9-7c9b-46c6-b83f-1be443d604d6)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=555e6bd0-8251-4204-b501-5fc4236dfaeb)
11:34:26 WARNING omero.gateway:__init__.py:4810 NoProcessorAvailable on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <88dc7add-735a-4b87-8df5-9df5fe0d46bbomero.api.IScript> runScript((5945, {'datasetId': object #0 (::omero::RLong)
11:34:26 {
11:34:26 _val = 1359
11:34:26 }}, None, <ServiceOptsDict: {'omero.client.uuid': '88dc7add-735a-4b87-8df5-9df5fe0d46bb', 'omero.session.uuid': '555e6bd0-8251-4204-b501-5fc4236dfaeb', 'omero.group': '3665'}>), {})
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py", line 4830, in __call__
11:34:26 return self.f(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 935, in runScript
11:34:26 return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
11:34:26 omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
11:34:26 {
11:34:26 serverStackTrace =
11:34:26 serverExceptionClass =
11:34:26 message = No processor available! [0 response(s)]
11:34:26 processorCount = 0
11:34:26 }
11:34:26 --------------------------- Captured stderr teardown ---------------------------
11:34:26 **
11:34:26 ---------------------------- Captured log teardown -----------------------------
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=7050ce2f-0f4c-4267-8b02-c91e2dbae3c9)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=1097a9b1-e1b3-4866-ba0b-ed552a838845)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=b3ea7f77-b113-4f73-9c02-86df4fccb28e)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 ___________________ TestPerformance.testListFileAnnotations ____________________
11:34:26 self = <test.integration.gatewaytest.test_performance.TestPerformance object at 0x7fd4d6f04160>
11:34:26 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7fd531816cd0>
11:34:26 @pytest.mark.broken(ticket="11494")
11:34:26 def testListFileAnnotations(self, gatewaywrapper):
11:34:26 """
11:34:26 testListFileAnnotations: test speed of getObjects('FileAnnotation') vv
11:34:26 listFileAnnotations()
11:34:26 """
11:34:26 gatewaywrapper.loginAsAuthor()
11:34:26 updateService = gatewaywrapper.gateway.getUpdateService()
11:34:26 def createFileAnnotation(name, ns):
11:34:26 originalFile = omero.model.OriginalFileI()
11:34:26 originalFile.setName(rstring(name))
11:34:26 originalFile.setPath(rstring(name))
11:34:26 originalFile.setSize(rlong(0))
11:34:26 originalFile.setHash(rstring("Foo"))
11:34:26 originalFile = updateService.saveAndReturnObject(originalFile)
11:34:26 fa = omero.model.FileAnnotationI()
11:34:26 fa.setFile(originalFile)
11:34:26 fa.setNs(rstring(ns))
11:34:26 fa = updateService.saveAndReturnObject(fa)
11:34:26 return fa.id.val
11:34:26 ns = "omero.gatewaytest.PerformanceTest.testListFileAnnotations"
11:34:26 fileCount = 250
11:34:26 fileAnnIds = [createFileAnnotation("testListFileAnnotations%s" % i,
11:34:26 ns) for i in range(fileCount)]
11:34:26 # test speed of listFileAnnotations
11:34:26 startTime = time.time()
11:34:26 fileCount = 0
11:34:26 fileAnns = gatewaywrapper.gateway.listFileAnnotations(toInclude=[ns])
11:34:26 for fa in fileAnns:
11:34:26 fa.getFileName()
11:34:26 fileCount += 1
11:34:26 t1 = time.time() - startTime
11:34:26 print("listFileAnnotations for %d files = %s secs" % (fileCount, t1))
11:34:26 # Typically 1.4 secs
11:34:26 # test speed of getOjbects("Annotation") - lazy loading file names
11:34:26 startTime = time.time()
11:34:26 fileCount = 0
11:34:26 fileAnns = gatewaywrapper.gateway.getObjects(
11:34:26 "FileAnnotation", attributes={'ns': ns})
11:34:26 for fa in fileAnns:
11:34:26 fa.getFileName()
11:34:26 fileCount += 1
11:34:26 t2 = time.time() - startTime
11:34:26 print("getObjects, lazy loading file names for %d files = %s secs"
11:34:26 % (fileCount, t2)) # Typically 2.8 secs
11:34:26 # test speed of getOjbects("Annotation") - NO loading file names
11:34:26 startTime = time.time()
11:34:26 fileCount = 0
11:34:26 fileAnns = gatewaywrapper.gateway.getObjects(
11:34:26 "FileAnnotation", attributes={'ns': ns})
11:34:26 for fa in fileAnns:
11:34:26 fa.getId()
11:34:26 fileCount += 1
11:34:26 t3 = time.time() - startTime
11:34:26 print("getObjects, NO file names for %d files = %s secs"
11:34:26 % (fileCount, t3)) # Typically 0.4 secs
11:34:26 > assert t1 < t2, "Blitz listFileAnnotations() should be faster " \
11:34:26 "than getObjects('FileAnnotation')"
11:34:26 E AssertionError: Blitz listFileAnnotations() should be faster than getObjects('FileAnnotation')
11:34:26 E assert 0.22876262664794922 < 0.2202303409576416
11:34:26 test/integration/gatewaytest/test_performance.py:91: AssertionError
11:34:26 ------------------------------ Captured log setup ------------------------------
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=a9227ceb-59f3-4e45-b458-669cef22767b)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=d169157d-b3db-4931-bd0f-a48cac4e7d0a)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=c4750b47-33e4-4a29-9ae2-bddbb9560914)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=b2545824-9932-4f8f-bf14-77b860fb023d)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=4522abf8-4216-423d-805e-e12f0dd211c9)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=732ec40c-f8d3-4996-b1db-b0e6be0710af)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 ----------------------------- Captured stdout call -----------------------------
11:34:26 listFileAnnotations for 250 files = 0.22876262664794922 secs
11:34:26 getObjects, lazy loading file names for 250 files = 0.2202303409576416 secs
11:34:26 getObjects, NO file names for 250 files = 0.14842486381530762 secs
11:34:26 ------------------------------ Captured log call -------------------------------
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=ccb1e974-e39e-473d-9d22-3c9a7ff63d2f)
11:34:26 --------------------------- Captured stderr teardown ---------------------------
11:34:26 **
11:34:26 ---------------------------- Captured log teardown -----------------------------
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=78ff557d-f4b3-4e05-9da7-0f58bbb9d314)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=aa19d304-486f-42f0-bfb2-3fbcbf174618)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=0e804ced-6696-408f-9656-64f5fcc8bfda)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 _________________________ TestUser.testCrossGroupRead __________________________
11:34:26 self = <test.integration.gatewaytest.test_user.TestUser object at 0x7fd4d6ee1f40>
11:34:26 gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7fd531806040>
11:34:26 @pytest.mark.broken(ticket="11545")
11:34:26 def testCrossGroupRead(self, gatewaywrapper):
11:34:26 gatewaywrapper.loginAsAuthor()
11:34:26 p = gatewaywrapper.getTestProject()
11:34:26 assert str(p.getDetails().permissions)[4] == '-'
11:34:26 d = p.getDetails()
11:34:26 g = d.getGroup()
11:34:26 gatewaywrapper.loginAsUser()
11:34:26 gatewaywrapper.gateway.SERVICE_OPTS.setOmeroGroup('-1')
11:34:26 > assert not g.getId() in \
11:34:26 gatewaywrapper.gateway.getEventContext().memberOfGroups
11:34:26 E assert not 2719 in [2718, 1, 2730, 2719, 2785]
11:34:26 E + where 2719 = getId()
11:34:26 E + where getId = <_ExperimenterGroupWrapper id=2719>.getId
11:34:26 E + and [2718, 1, 2730, 2719, 2785] = object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10317\n sessionUuid = 205b1ecf-62a4-4f6a-b638-2183ded6872d\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2785\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n}.memberOfGroups
11:34:26 E + where object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10317\n sessionUuid = 205b1ecf-62a4-4f6a-b638-2183ded6872d\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2785\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n} = getEventContext()
11:34:26 E + where getEventContext = <omero.gateway._BlitzGateway object at 0x7fd531fe05b0>.getEventContext
11:34:26 E + where <omero.gateway._BlitzGateway object at 0x7fd531fe05b0> = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7fd531806040>.gateway
11:34:26 test/integration/gatewaytest/test_user.py:127: AssertionError
11:34:26 ------------------------------ Captured log setup ------------------------------
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=324396e2-d2c7-44c7-ba08-a79d89cbe186)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=02b97c04-1eb0-4d6a-982d-a479826015d7)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=8de6d0c7-543b-45fc-ad24-e8df9bf9a72a)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=33d30922-9765-43c8-adb7-c70ccc51339a)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=88b49964-9bdc-4d70-b567-0b94b8a8291a)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=9612c6e4-a8f9-43f6-a9fc-2f1bfd593729)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 ------------------------------ Captured log call -------------------------------
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=e35c0991-c12f-4bad-b9aa-c7463be6c5ce)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=205b1ecf-62a4-4f6a-b638-2183ded6872d)
11:34:26 --------------------------- Captured stderr teardown ---------------------------
11:34:26 **
11:34:26 ---------------------------- Captured log teardown -----------------------------
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=68d6c5cc-8aa0-4e4b-8eab-cdd495f09039)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=b161d05e-4172-4e46-a5e8-00316847a83e)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 INFO omero.gateway:__init__.py:2243 created connection (uuid=80436f6d-afe1-49c9-80ed-4ab75bbde681)
11:34:26 INFO omero.gateway:__init__.py:1940 closed connection (uuid=None)
11:34:26 _________________________ TestPing.testProcessCallback _________________________
11:34:26 self = <test.integration.scriptstest.test_ping.TestPing object at 0x7fd4d6e11f70>
11:34:26 @pytest.mark.broken(ticket="11494")
11:34:26 def testProcessCallback(self):
11:34:26 callback = CallbackI()
11:34:26 id = self.client.getCommunicator().stringToIdentity(str(uuid.uuid4()))
11:34:26 cb = self.client.getAdapter().add(callback, id)
11:34:26 cb = omero.grid.ProcessCallbackPrx.uncheckedCast(cb)
11:34:26 p = self._getProcessor()
11:34:26 params = p.params()
11:34:26 assert params.stdoutFormat
11:34:26 process = p.execute(rmap({}))
11:34:26 process.registerCallback(cb)
11:34:26 self.assertSuccess(p, process)
11:34:26 > assert len(callback.finish) > 0
11:34:26 E assert 0 > 0
11:34:26 E + where 0 = len([])
11:34:26 E + where [] = object #0 (::omero::grid::ProcessCallback)\n{\n}.finish
11:34:26 test/integration/scriptstest/test_ping.py:214: AssertionError
11:34:26 ______________________ TestScriptRepo.testGetGroupScripts ______________________
11:34:26 self = <test.integration.scriptstest.test_repo.TestScriptRepo object at 0x7fd4d6e1dfa0>
11:34:26 @pytest.mark.broken(ticket="11494")
11:34:26 def testGetGroupScripts(self):
11:34:26 scriptService = self.sf.getScriptService()
11:34:26 client = self.new_client(self.group)
11:34:26 sid = client.sf.getScriptService().uploadScript(
11:34:26 "/test/otheruser.py",
11:34:26 """if True:
11:34:26 import omero, omero.scripts as OS
11:34:26 OS.client("testGetGroupScripts")
11:34:26 """)
11:34:26 myGroupScripts = scriptService.getUserScripts(
11:34:26 [omero.model.ExperimenterGroupI(self.group.id.val, False)])
11:34:26 > assert sid in [x.id.val for x in myGroupScripts]
11:34:26 E assert 6201 in []
11:34:26 test/integration/scriptstest/test_repo.py:78: AssertionError
11:34:26 _____________________________ TestTables.test2098 ______________________________
11:34:26 self = <test_service.TestTables object at 0x7fd55ea05dc0>
11:34:26 @pytest.mark.broken(ticket="11534")
11:34:26 def test2098(self):
11:34:26 """
11:34:26 Creates and downloads an HDF file and checks
11:34:26 that its size and hash match whats in the db
11:34:26 """
11:34:26 grid = self.client.sf.sharedResources()
11:34:26 table = grid.newTable(1, "/test")
11:34:26 assert table
11:34:26 lc = columns.LongColumnI('lc', 'desc', [1])
11:34:26 file = None
11:34:26 try:
11:34:26 file = table.getOriginalFile()
11:34:26 assert file
11:34:26 table.initialize([lc])
11:34:26 table.addData([lc])
11:34:26 finally:
11:34:26 # Not deleting since queried
11:34:26 table.close()
11:34:26 # Reload the file
11:34:26 file = self.client.sf.getQueryService().get(
11:34:26 "OriginalFile", file.id.val)
11:34:26 # Check values
11:34:26 > p = path.path(self.tmpfile())
11:34:26 E AttributeError: type object 'path' has no attribute 'path'
11:34:26 test/integration/tablestest/test_service.py:154: AttributeError
11:34:26 _________________________ TestTables.testReadOnlyFile __________________________
11:34:26 self = <test_service.TestTables object at 0x7fd55e99a040>
11:34:26 @pytest.mark.broken(ticket="unimplemented")
11:34:26 def testReadOnlyFile(self):
11:34:26 """
11:34:26 Create an HDF5 file on the server, and then mark it read-only.
11:34:26 The server should still allow you to load & read that file.
11:34:26 """
11:34:26 self.testBlankTable() # ofile
11:34:26 > filename = self.unique_dir + "/file.txt"
11:34:26 E AttributeError: 'TestTables' object has no attribute 'unique_dir'
11:34:26 test/integration/tablestest/test_service.py:661: AttributeError
11:34:26 ___________________________ TestTables.testReadEqual ___________________________
11:34:26 self = <test_service.TestTables object at 0x7fd55e9a12b0>
11:34:26 twoColumnFiveRowTable = 3c031a72-2eb3-4349-841e-7629b331e458/Table-1dbbb907-91d5-4a0b-8a94-b3669912a6bf -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 @pytest.mark.broken(reason="start=0,end=0 to be reviewed")
11:34:26 def testReadEqual(self, twoColumnFiveRowTable):
11:34:26 # start=0, end=0 has a special contract
11:34:26 data = twoColumnFiveRowTable.read([0], 0, 0)
11:34:26 assert 1 == len(data.columns)
11:34:26 > assert [1] == data.columns[0].values
11:34:26 E assert [1] == [1, 2, 3, 4, 5]
11:34:26 E
11:34:26 E Right contains 4 more items, first extra item: 2
11:34:26 E
11:34:26 E Full diff:
11:34:26 E [
11:34:26 E 1,
11:34:26 E - 2,
11:34:26 E - 3,
11:34:26 E - 4,
11:34:26 E - 5,
11:34:26 E ]
11:34:26 test/integration/tablestest/test_service.py:967: AssertionError
11:34:26 ________________________ TestTables.testReadOutOfRange _________________________
11:34:26 self = <test_service.TestTables object at 0x7fd55e9a1a30>
11:34:26 twoColumnFiveRowTable = 3c031a72-2eb3-4349-841e-7629b331e458/Table-3ae81d56-43c5-497a-8620-c5a31275dd93 -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 @pytest.mark.broken(reason="need to be reviewed")
11:34:26 def testReadOutOfRange(self, twoColumnFiveRowTable):
11:34:26 # [1, 2, 3, 4, 5][-1:5] = [5]
11:34:26 data = twoColumnFiveRowTable.read([0], -1, 5)
11:34:26 assert 1 == len(data.columns)
11:34:26 assert [5] == data.columns[0].values
11:34:26 > assert [4] == data.rowNumbers
11:34:26 E assert [4] == [-1, 0, 1, 2, 3, 4]
11:34:26 E
11:34:26 E At index 0 diff: 4 != -1
11:34:26 E Right contains 5 more items, first extra item: 0
11:34:26 E
11:34:26 E Full diff:
11:34:26 E [
11:34:26 E - -1,
11:34:26 E - 0,
11:34:26 E - 1,
11:34:26 E - 2,
11:34:26 E - 3,
11:34:26 E 4,
11:34:26 E ]
11:34:26 test/integration/tablestest/test_service.py:1015: AssertionError
11:34:26 ____________________ TestAdmin.testChangePasswordWhenUnset _____________________
11:34:26 self = <test.integration.test_admin.TestAdmin object at 0x7fd55e9b1460>
11:34:26 @pytest.mark.broken(reason="Empty password disabled by config",
11:34:26 ticket="3201")
11:34:26 def testChangePasswordWhenUnset(self):
11:34:26 """
11:34:26 Shows that it's possible to use the
11:34:26 changePasswordWithOldPassword when
11:34:26 previously no password was set.
11:34:26 See ticket:3201
11:34:26 """
11:34:26 client = self.new_client()
11:34:26 admin = client.sf.getAdminService()
11:34:26 # By setting the user's password to the empty string
11:34:26 # any password will be allowed as the old password
11:34:26 admin.changePassword(rstring(""))
11:34:26 > admin.changePasswordWithOldPassword(rstring("IGNORED"), rstring("ome"))
11:34:26 test/integration/test_admin.py:118:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = db2a9a26-78d4-42f6-aaac-5eba5b2e095f/ef5a9255-a915-43c9-a4c1-472b5d888defomero.api.IAdmin -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 oldPassword = object #0 (::omero::RString)
11:34:26 {
11:34:26 _val = IGNORED
11:34:26 }
11:34:26 newPassword = object #0 (::omero::RString)
11:34:26 {
11:34:26 _val = ome
11:34:26 }, _ctx = None
11:34:26 def changePasswordWithOldPassword(self, oldPassword, newPassword, _ctx=None):
11:34:26 > return _M_omero.api.IAdmin._op_changePasswordWithOldPassword.invoke(self, ((oldPassword, newPassword), _ctx))
11:34:26 E omero.SecurityViolation: exception ::omero::SecurityViolation
11:34:26 E {
11:34:26 E serverStackTrace = ome.conditions.SecurityViolation: Old password is invalid
11:34:26 E at ome.logic.AdminImpl.changePasswordWithOldPassword(AdminImpl.java:1253)
11:34:26 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
11:34:26 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy91.changePasswordWithOldPassword(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
11:34:26 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy91.changePasswordWithOldPassword(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
11:34:26 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 E at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 E at ome.services.blitz.impl.AdminI.changePasswordWithOldPassword_async(AdminI.java:144)
11:34:26 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
11:34:26 E at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy92.changePasswordWithOldPassword_async(Unknown Source)
11:34:26 E at omero.api._IAdminTie.changePasswordWithOldPassword_async(_IAdminTie.java:112)
11:34:26 E at omero.api._IAdminDisp.___changePasswordWithOldPassword(_IAdminDisp.java:1977)
11:34:26 E at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2229)
11:34:26 E at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 E at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 E at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 E
11:34:26 E serverExceptionClass = ome.conditions.SecurityViolation
11:34:26 E message = Old password is invalid
11:34:26 E }
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py:2460: SecurityViolation
11:34:26 ______________________________ TestAdmin.test9193 ______________________________
11:34:26 self = <test.integration.test_admin.TestAdmin object at 0x7fd55e9b83a0>
11:34:26 @pytest.mark.broken(reason="Is this test still valid?", ticket="11465")
11:34:26 def test9193(self):
11:34:26 # Test the removal of removing users
11:34:26 # from a group when the group in question
11:34:26 # may be their last (i.e. default) group
11:34:26 g = self.new_group()
11:34:26 u = self.new_user(group=g)
11:34:26 # Test removing the default group
11:34:26 > self.remove_experimenters(g, [u])
11:34:26 test/integration/test_admin.py:240:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:247: in remove_experimenters
11:34:26 admin.removeGroups(user, [group])
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = f0bccb52-799a-451b-a227-97ade0fec6cc/c9c4eb04-7018-4a62-a421-f155e4dae09aomero.api.IAdmin -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 user = object #0 (::omero::model::Experimenter)
11:34:26 {
11:34:26 _id = object #1 (::omero::RLong)
11:34:26 {
11:34:26 _val = 4731
11:34:26 }
11:34:26 _d...annotationLinksSeq =
11:34:26 {
11:34:26 }
11:34:26 _annotationLinksLoaded = False
11:34:26 _annotationLinksCountPerOwner =
11:34:26 {
11:34:26 }
11:34:26 }
11:34:26 groups = [object #0 (::omero::model::ExperimenterGroup)
11:34:26 {
11:34:26 _id = object #1 (::omero::RLong)
11:34:26 {
11:34:26 _val = 3672
11:34:26 }
11:34:26 ...{
11:34:26 }
11:34:26 _annotationLinksLoaded = False
11:34:26 _annotationLinksCountPerOwner =
11:34:26 {
11:34:26 }
11:34:26 _description = <nil>
11:34:26 }]
11:34:26 _ctx = None
11:34:26 def removeGroups(self, user, groups, _ctx=None):
11:34:26 > return _M_omero.api.IAdmin._op_removeGroups.invoke(self, ((user, groups), _ctx))
11:34:26 E omero.ValidationException: exception ::omero::ValidationException
11:34:26 E {
11:34:26 E serverStackTrace = ome.conditions.ValidationException: experimenter cannot be a member of only the 'user' group, a different default group is also required
11:34:26 E at ome.logic.AdminImpl.removeGroups(AdminImpl.java:813)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor596.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy91.removeGroups(Unknown Source)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor596.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy91.removeGroups(Unknown Source)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor3271.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 E at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 E at ome.services.blitz.impl.AdminI.removeGroups_async(AdminI.java:318)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor3270.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy92.removeGroups_async(Unknown Source)
11:34:26 E at omero.api._IAdminTie.removeGroups_async(_IAdminTie.java:312)
11:34:26 E at omero.api._IAdminDisp.___removeGroups(_IAdminDisp.java:1621)
11:34:26 E at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2377)
11:34:26 E at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 E at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 E at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 E
11:34:26 E serverExceptionClass = ome.conditions.ValidationException
11:34:26 E message = experimenter cannot be a member of only the 'user' group, a different default group is also required
11:34:26 E }
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IAdmin_ice.py:2011: ValidationException
11:34:26 _________________ TestFiles.testUploadDifferentSizeTicket2337 __________________
11:34:26 self = <test.integration.test_files.TestFiles object at 0x7fd55e94d1c0>
11:34:26 @pytest.mark.broken(ticket="11610")
11:34:26 def testUploadDifferentSizeTicket2337(self):
11:34:26 uploaded = tmpfile()
11:34:26 ofile = self.client.upload(str(uploaded), type="text/plain")
11:34:26 uploaded.write_lines(["abc", "def"]) # Shorten
11:34:26 > ofile = self.client.upload(
11:34:26 str(uploaded), type="text/plain", ofile=ofile)
11:34:26 test/integration/test_files.py:62:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero/clients.py:878: in upload
11:34:26 ofile = up.saveAndReturnObject(ofile)
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = 81596ce0-784a-4203-9a0b-8835d83cbaa8/c664ec6f-4fec-43b7-8788-900f5103ce19omero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 obj = object #0 (::omero::model::OriginalFile)
11:34:26 {
11:34:26 _id = object #1 (::omero::RLong)
11:34:26 {
11:34:26 _val = 6206
11:34:26 }
11:34:26 _d...ksCountPerOwner =
11:34:26 {
11:34:26 }
11:34:26 _name = object #60 (::omero::RString)
11:34:26 {
11:34:26 _val = omerov1vxmb5o.tmp
11:34:26 }
11:34:26 }
11:34:26 _ctx = None
11:34:26 def saveAndReturnObject(self, obj, _ctx=None):
11:34:26 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
11:34:26 E omero.OptimisticLockException: exception ::omero::OptimisticLockException
11:34:26 E {
11:34:26 E serverStackTrace = ome.conditions.OptimisticLockException: You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124919 to ome.model.meta.Event:Id_124918
11:34:26 E You may need to reload the object before continuing.
11:34:26 E at ome.security.basic.OmeroInterceptor.managedEvent(OmeroInterceptor.java:1201)
11:34:26 E at ome.security.basic.OmeroInterceptor.checkManagedDetails(OmeroInterceptor.java:963)
11:34:26 E at ome.security.basic.OmeroInterceptor.resetDetails(OmeroInterceptor.java:465)
11:34:26 E at ome.security.basic.OmeroInterceptor.onFlushDirty(OmeroInterceptor.java:239)
11:34:26 E at org.hibernate.event.def.DefaultFlushEntityEventListener.invokeInterceptor(DefaultFlushEntityEventListener.java:372)
11:34:26 E at org.hibernate.event.def.DefaultFlushEntityEventListener.handleInterception(DefaultFlushEntityEventListener.java:349)
11:34:26 E at org.hibernate.event.def.DefaultFlushEntityEventListener.scheduleUpdate(DefaultFlushEntityEventListener.java:287)
11:34:26 E at org.hibernate.event.def.DefaultFlushEntityEventListener.onFlushEntity(DefaultFlushEntityEventListener.java:155)
11:34:26 E at org.hibernate.event.def.AbstractFlushingEventListener.flushEntities(AbstractFlushingEventListener.java:219)
11:34:26 E at org.hibernate.event.def.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:99)
11:34:26 E at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:50)
11:34:26 E at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1216)
11:34:26 E at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:342)
11:34:26 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:358)
11:34:26 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
11:34:26 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor1128.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 E at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor1127.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy95.saveAndReturnObject_async(Unknown Source)
11:34:26 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
11:34:26 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
11:34:26 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
11:34:26 E at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 E at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 E at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 E
11:34:26 E serverExceptionClass = ome.conditions.OptimisticLockException
11:34:26 E message = You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124919 to ome.model.meta.Event:Id_124918
11:34:26 E You may need to reload the object before continuing.
11:34:26 E backOff = 0
11:34:26 E }
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: OptimisticLockException
11:34:26 _____________________________ TestIShare.test1172 ______________________________
11:34:26 self = <test.integration.test_ishare.TestIShare object at 0x7fd55e8a40d0>
11:34:26 @pytest.mark.broken(reason="shares are image-centric for now")
11:34:26 def test1172(self):
11:34:26 uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
11:34:26 share = self.root.sf.getShareService()
11:34:26 query = self.root.sf.getQueryService()
11:34:26 # create user
11:34:26 client_share1, user1 = self.new_client_and_user()
11:34:26 # create dataset with image
11:34:26 ds = self.make_dataset(name="dataset-%s" % uuid, client=self.root)
11:34:26 img = self.new_image(name='test-img in dataset-%s' % uuid)
11:34:26 self.link(ds, img, client=self.root)
11:34:26 items = list()
11:34:26 p = omero.sys.Parameters()
11:34:26 p.map = {"oid": ds.id}
11:34:26 sql = (
11:34:26 "select ds from Dataset ds "
11:34:26 "join fetch ds.details.owner "
11:34:26 "join fetch ds.details.group "
11:34:26 "left outer join fetch ds.imageLinks dil "
11:34:26 "left outer join fetch dil.child i "
11:34:26 "where ds.id=:oid")
11:34:26 items.extend(query.findAllByQuery(sql, p))
11:34:26 assert 1 == len(items)
11:34:26 # members
11:34:26 p.map["eid"] = rlong(user1.id.val)
11:34:26 sql = ("select e from Experimenter e "
11:34:26 "where e.id =:eid order by e.omeName")
11:34:26 ms = query.findAllByQuery(sql, p)
11:34:26 sid = share.createShare(("test-share-%s" % uuid),
11:34:26 rtime(int(time.time() * 1000 + 86400)),
11:34:26 items, ms, [], True)
11:34:26 # USER RETRIEVAL
11:34:26 # login as user1
11:34:26 share1 = client_share1.sf.getShareService()
11:34:26 query1 = client_share1.sf.getQueryService()
11:34:26 content = share1.getContents(sid)
11:34:26 # Content now contains just the dataset with nothing loaded
11:34:26 assert 1 == len(content)
11:34:26 # get shared dataset and image when share is activated
11:34:26 share1.activate(sid)
11:34:26 # retrieve dataset
11:34:26 p = omero.sys.Parameters()
11:34:26 p.map = {"ids": rlist([ds.id])}
11:34:26 sql = (
11:34:26 "select ds from Dataset ds "
11:34:26 "join fetch ds.details.owner "
11:34:26 "join fetch ds.details.group "
11:34:26 "left outer join fetch ds.imageLinks dil "
11:34:26 "left outer join fetch dil.child i "
11:34:26 "where ds.id in (:ids) order by ds.name")
11:34:26 try:
11:34:26 res1 = query1.findAllByQuery(sql, p)
11:34:26 assert False, "This should throw an exception"
11:34:26 except Exception:
11:34:26 pass
11:34:26 # Now we add all the other elements to the share to prevent
11:34:26 # the security violation
11:34:26 #
11:34:26 # Not working imgs = cntar.getImages("Dataset",[ds.id.val], None)
11:34:26 img = query.findByQuery(
11:34:26 "select i from Image i join fetch i.datasetLinks dil "
11:34:26 "join dil.parent d where d.id = %s " % ds.id.val, None)
11:34:26 assert img
11:34:26 share.addObject(sid, img)
11:34:26 share.addObjects(sid, img.copyDatasetLinks())
11:34:26 assert 3 == len(share.getContents(sid))
11:34:26 # And try again to load them
11:34:26 share1.activate(sid)
11:34:26 res1 = query1.findAllByQuery(sql, p)
11:34:26 > assert len(res1) == 1
11:34:26 E assert 0 == 1
11:34:26 E + where 0 = len([])
11:34:26 test/integration/test_ishare.py:381: AssertionError
11:34:26 ____________________________ TestITimeline.test1225 ____________________________
11:34:26 self = <test.integration.test_itimeline.TestITimeline object at 0x7fd55e8ba640>
11:34:26 @pytest.mark.broken(ticket="1225")
11:34:26 def test1225(self):
11:34:26 uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
11:34:26 update = self.root.sf.getUpdateService()
11:34:26 timeline = self.root.sf.getTimelineService()
11:34:26 query = self.root.sf.getQueryService()
11:34:26 # create dataset
11:34:26 to_save = list()
11:34:26 for i in range(0, 10):
11:34:26 to_save.append(self.new_dataset(name="ds-%i-%s" % (i, uuid)))
11:34:26 dss = update.saveAndReturnArray(to_save)
11:34:26 # create tag
11:34:26 for i in range(0, 10):
11:34:26 ds1 = query.get("Dataset", dss[i].id.val)
11:34:26 ann = omero.model.TagAnnotationI()
11:34:26 ann.textValue = rstring('tag-%i-%s' % (i, uuid))
11:34:26 ann.setDescription(rstring('desc-%i-%s' % (i, uuid)))
11:34:26 t_ann = omero.model.DatasetAnnotationLinkI()
11:34:26 t_ann.setParent(ds1)
11:34:26 t_ann.setChild(ann)
11:34:26 update.saveObject(t_ann)
11:34:26 p = omero.sys.Parameters()
11:34:26 p.map = {}
11:34:26 f = omero.sys.Filter()
11:34:26 f.ownerId = rlong(0)
11:34:26 f.limit = rint(10)
11:34:26 p.theFilter = f
11:34:26 M = timeline.getMostRecentAnnotationLinks
11:34:26 tagids = set([e.child.id.val for e in
11:34:26 M(None, ['TagAnnotation'], None, p)])
11:34:26 assert len(tagids) == 10
11:34:26 # And under #9609
11:34:26 tagids = set([e.child.id.val for e in
11:34:26 M(None, ['TagAnnotation'], None, p,
11:34:26 {"omero.group": "-1"})])
11:34:26 > assert len(tagids) == 10
11:34:26 E assert 6 == 10
11:34:26 E + where 6 = len({1908, 1944, 1995, 9680, 13302, 41710})
11:34:26 test/integration/test_itimeline.py:244: AssertionError
11:34:26 ___________________________ TestPermissions.test3136 ___________________________
11:34:26 self = <test.integration.test_permissions.TestPermissions object at 0x7fd53e7a9460>
11:34:26 @pytest.mark.broken(ticket="11494")
11:34:26 def test3136(self):
11:34:26 """
11:34:26 Calls to updateGroup were taking too long
11:34:26 because the default value of permissions
11:34:26 returned by the server was triggering a
11:34:26 full changePermissions event.
11:34:26 """
11:34:26 admin = self.root.sf.getAdminService()
11:34:26 group = self.new_group(perms="rw----")
11:34:26 # Change the name but not the permissions
11:34:26 group.name = rstring(self.uuid())
11:34:26 elapsed1, rv = self.timeit(admin.updateGroup, group)
11:34:26 # Now change the name and the permissions
11:34:26 group.name = rstring(self.uuid())
11:34:26 group.details.permissions = omero.model.PermissionsI("rwr---")
11:34:26 elapsed2, rv = self.timeit(admin.updateGroup, group)
11:34:26 # Locally this test always fails as the two times are
11:34:26 # the same order of magnitude. This may be an indication that
11:34:26 # the relevant ticket:
11:34:26 # https://trac.openmicroscopy.org/ome/ticket/3136
11:34:26 # is still valid. Does the ticket need re-opening
11:34:26 # or does the test condition need relaxing?
11:34:26 > assert elapsed1 < (0.1 * elapsed2), \
11:34:26 "elapsed1=%s, elapsed2=%s" % (elapsed1, elapsed2)
11:34:26 E AssertionError: elapsed1=0.014236211776733398, elapsed2=0.014251470565795898
11:34:26 E assert 0.014236211776733398 < (0.1 * 0.014251470565795898)
11:34:26 test/integration/test_permissions.py:488: AssertionError
11:34:26 __________________ TestPermissions.testSaveWithNegOneExplicit __________________
11:34:26 self = <test.integration.test_permissions.TestPermissions object at 0x7fd53e7863a0>
11:34:26 @pytest.mark.broken(ticket="11374")
11:34:26 def testSaveWithNegOneExplicit(self):
11:34:26 # Get a user and services
11:34:26 client, user = self.new_client_and_user()
11:34:26 # Create a new object with an explicit group
11:34:26 admin = client.sf.getAdminService()
11:34:26 ec = admin.getEventContext()
11:34:26 grp = omero.model.ExperimenterGroupI(ec.groupId, False)
11:34:26 tag = omero.model.TagAnnotationI()
11:34:26 tag.details.group = grp
11:34:26 # Now try to save it in the -1 context
11:34:26 update = client.sf.getUpdateService()
11:34:26 all_context = {"omero.group": "-1"}
11:34:26 > update.saveAndReturnObject(tag, all_context)
11:34:26 test/integration/test_permissions.py:586:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = 513f52f9-cde2-4191-855a-dff9ef19f0c3/96cdc43f-e295-4748-8c09-afb74669ec92omero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 obj = object #0 (::omero::model::TagAnnotation)
11:34:26 {
11:34:26 _id = <nil>
11:34:26 _details = object #1 (::omero::model::Details)
11:34:26 {
11:34:26 ...nksSeq =
11:34:26 {
11:34:26 }
11:34:26 _annotationLinksLoaded = True
11:34:26 _annotationLinksCountPerOwner = {}
11:34:26 _textValue = <nil>
11:34:26 }
11:34:26 _ctx = {'omero.group': '-1'}
11:34:26 def saveAndReturnObject(self, obj, _ctx=None):
11:34:26 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
11:34:26 E omero.ApiUsageException: exception ::omero::ApiUsageException
11:34:26 E {
11:34:26 E serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
11:34:26 E at ome.model.internal.Permissions.<init>(Permissions.java:164)
11:34:26 E at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
11:34:26 E at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
11:34:26 E at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
11:34:26 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
11:34:26 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
11:34:26 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
11:34:26 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
11:34:26 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
11:34:26 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
11:34:26 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
11:34:26 E at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
11:34:26 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
11:34:26 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
11:34:26 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
11:34:26 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
11:34:26 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor1128.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 E at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor1127.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy95.saveAndReturnObject_async(Unknown Source)
11:34:26 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
11:34:26 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
11:34:26 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
11:34:26 E at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 E at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 E at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 E
11:34:26 E serverExceptionClass = ome.conditions.ApiUsageException
11:34:26 E message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
11:34:26 E }
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: ApiUsageException
11:34:26 ____________________ TestPermissions.testSaveWithNegBadLink ____________________
11:34:26 self = <test.integration.test_permissions.TestPermissions object at 0x7fd53e7ae910>
11:34:26 @pytest.mark.broken(ticket="11374")
11:34:26 def testSaveWithNegBadLink(self): # ticket:8194
11:34:26 # Get a user and services
11:34:26 client, user = self.new_client_and_user()
11:34:26 admin = client.sf.getAdminService()
11:34:26 group1 = admin.getGroup(admin.getEventContext().groupId)
11:34:26 group2 = self.new_group(experimenters=[user])
11:34:26 for x in (group1, group2):
11:34:26 x.unload()
11:34:26 admin.getEventContext() # Refresh
11:34:26 # Create a new object with a bad link
11:34:26 image = self.new_image()
11:34:26 image.details.group = group1
11:34:26 tag = omero.model.TagAnnotationI()
11:34:26 tag.details.group = group2
11:34:26 link = image.linkAnnotation(tag)
11:34:26 link.details.group = group2
11:34:26 # Now try to save it in the -1 context
11:34:26 update = client.sf.getUpdateService()
11:34:26 all_context = {"omero.group": "-1"}
11:34:26 # Bad links should be detected and
11:34:26 # a security violation raised.
11:34:26 with pytest.raises(omero.GroupSecurityViolation):
11:34:26 > update.saveAndReturnObject(image, all_context)
11:34:26 test/integration/test_permissions.py:635:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = cd94bf80-0465-4cfe-a7c4-7145d459352f/e502b33a-196a-48d0-9967-f750705953b8omero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 obj = object #0 (::omero::model::Image)
11:34:26 {
11:34:26 _id = <nil>
11:34:26 _details = object #1 (::omero::model::Details)
11:34:26 {
11:34:26 _...66f0ad-e84c-483f-9db5-2c374bb2a77d
11:34:26 }
11:34:26 _description = object #14 (::omero::RString)
11:34:26 {
11:34:26 _val =
11:34:26 }
11:34:26 }
11:34:26 _ctx = {'omero.group': '-1'}
11:34:26 def saveAndReturnObject(self, obj, _ctx=None):
11:34:26 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
11:34:26 E omero.ApiUsageException: exception ::omero::ApiUsageException
11:34:26 E {
11:34:26 E serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
11:34:26 E at ome.model.internal.Permissions.<init>(Permissions.java:164)
11:34:26 E at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
11:34:26 E at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
11:34:26 E at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
11:34:26 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
11:34:26 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
11:34:26 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
11:34:26 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
11:34:26 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
11:34:26 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
11:34:26 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
11:34:26 E at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
11:34:26 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
11:34:26 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
11:34:26 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
11:34:26 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
11:34:26 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor1128.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 E at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor1127.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy95.saveAndReturnObject_async(Unknown Source)
11:34:26 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
11:34:26 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
11:34:26 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
11:34:26 E at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 E at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 E at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 E
11:34:26 E serverExceptionClass = ome.conditions.ApiUsageException
11:34:26 E message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
11:34:26 E }
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: ApiUsageException
11:34:26 _______________________ TestPermissions.testSaveBadLink ________________________
11:34:26 self = <test.integration.test_permissions.TestPermissions object at 0x7fd53e7aecd0>
11:34:26 @pytest.mark.broken(ticket="11375")
11:34:26 def testSaveBadLink(self):
11:34:26 # Get a user and services
11:34:26 client, user = self.new_client_and_user()
11:34:26 admin = client.sf.getAdminService()
11:34:26 group1 = admin.getGroup(admin.getEventContext().groupId)
11:34:26 group2 = self.new_group(experimenters=[user])
11:34:26 for x in (group1, group2):
11:34:26 x.unload()
11:34:26 admin.getEventContext() # Refresh
11:34:26 # Create a new object with a bad link
11:34:26 image = self.new_image()
11:34:26 image.details.group = group1
11:34:26 tag = omero.model.TagAnnotationI()
11:34:26 tag.details.group = group2
11:34:26 link = image.linkAnnotation(tag)
11:34:26 link.details.group = group2
11:34:26 # Now try to save it
11:34:26 update = client.sf.getUpdateService()
11:34:26 # Bad links should be detected and
11:34:26 # a security violation raised.
11:34:26 with pytest.raises(omero.GroupSecurityViolation):
11:34:26 > update.saveAndReturnObject(image)
11:34:26 test/integration/test_permissions.py:664:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = 8fafe5c5-af29-4e07-956b-e171e2d0902f/38d9b765-b8dd-4db4-98ce-772732d39928omero.api.IUpdate -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 obj = object #0 (::omero::model::Image)
11:34:26 {
11:34:26 _id = <nil>
11:34:26 _details = object #1 (::omero::model::Details)
11:34:26 {
11:34:26 _...20e211-16ea-452d-ba9d-72aef07853d7
11:34:26 }
11:34:26 _description = object #14 (::omero::RString)
11:34:26 {
11:34:26 _val =
11:34:26 }
11:34:26 }
11:34:26 _ctx = None
11:34:26 def saveAndReturnObject(self, obj, _ctx=None):
11:34:26 > return _M_omero.api.IUpdate._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
11:34:26 E omero.SecurityViolation: exception ::omero::SecurityViolation
11:34:26 E {
11:34:26 E serverStackTrace = ome.conditions.SecurityViolation: You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41865 to ome.model.meta.ExperimenterGroup:Id_3683
11:34:26 E at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:785)
11:34:26 E at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
11:34:26 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
11:34:26 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
11:34:26 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
11:34:26 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
11:34:26 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
11:34:26 E at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
11:34:26 E at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
11:34:26 E at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
11:34:26 E at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
11:34:26 E at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.cascadeBeforeSave(AbstractSaveEventListener.java:450)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:336)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
11:34:26 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
11:34:26 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
11:34:26 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
11:34:26 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
11:34:26 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
11:34:26 E at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
11:34:26 E at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
11:34:26 E at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
11:34:26 E at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
11:34:26 E at org.hibernate.engine.Cascade.cascadeCollectionElements(Cascade.java:425)
11:34:26 E at org.hibernate.engine.Cascade.cascadeCollection(Cascade.java:362)
11:34:26 E at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:338)
11:34:26 E at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
11:34:26 E at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
11:34:26 E at org.hibernate.event.def.AbstractSaveEventListener.cascadeAfterSave(AbstractSaveEventListener.java:475)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:388)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
11:34:26 E at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
11:34:26 E at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
11:34:26 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
11:34:26 E at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
11:34:26 E at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
11:34:26 E at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
11:34:26 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
11:34:26 E at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
11:34:26 E at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
11:34:26 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
11:34:26 E at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
11:34:26 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
11:34:26 E at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
11:34:26 E at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor1128.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 E at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 E at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor1127.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy95.saveAndReturnObject_async(Unknown Source)
11:34:26 E at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
11:34:26 E at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
11:34:26 E at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
11:34:26 E at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 E at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 E at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 E
11:34:26 E serverExceptionClass = ome.conditions.SecurityViolation
11:34:26 E message = You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41865 to ome.model.meta.ExperimenterGroup:Id_3683
11:34:26 E }
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IUpdate_ice.py:163: SecurityViolation
11:34:26 ______ TestPermissions.testUseOfRawFileBeanScriptReadCorrectGroupAndUser _______
11:34:26 self = <test.integration.test_permissions.TestPermissions object at 0x7fd53e7376d0>
11:34:26 @pytest.mark.broken(ticket="11539")
11:34:26 def testUseOfRawFileBeanScriptReadCorrectGroupAndUser(self):
11:34:26 > self.assertValidScript(lambda v: {
11:34:26 'omero.group': str(v.details.group.id.val),
11:34:26 'omero.user': str(v.details.owner.id.val)
11:34:26 })
11:34:26 test/integration/test_permissions.py:831:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 test/integration/test_permissions.py:813: in assertValidScript
11:34:26 store.setFileId(script.id.val, ctx)
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = 5d0cd58a-77d4-4300-9038-b2fe80970e03/9c3be4dc-63b1-446c-92db-dfa39e09ce2aomero.api.RawFileStore -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 fileId = 1
11:34:26 _ctx = {'omero.client.uuid': '78734f63-14a6-4758-a2a9-a8b2885ae9a5', 'omero.group': '1', 'omero.session.uuid': '5d0cd58a-77d4-4300-9038-b2fe80970e03', 'omero.user': '0'}
11:34:26 def setFileId(self, fileId, _ctx=None):
11:34:26 > return _M_omero.api.RawFileStore._op_setFileId.invoke(self, ((fileId, ), _ctx))
11:34:26 E Ice.UnknownException: exception ::Ice::UnknownException
11:34:26 E {
11:34:26 E unknown = ome.conditions.SecurityViolation: User 4740 is not an admin and so cannot set uid to 0
11:34:26 E at ome.security.basic.BasicEventContext.checkAndInitialize(BasicEventContext.java:141)
11:34:26 E at ome.security.basic.CurrentDetails.checkAndInitialize(CurrentDetails.java:317)
11:34:26 E at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:449)
11:34:26 E at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
11:34:26 E at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 E at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 E at ome.services.blitz.repo.RepositoryDaoImpl.getFile(RepositoryDaoImpl.java:866)
11:34:26 E at ome.services.blitz.repo.PublicRepositoryI.checkId(PublicRepositoryI.java:823)
11:34:26 E at ome.services.blitz.repo.PublicRepositoryI.fileById(PublicRepositoryI.java:367)
11:34:26 E at omero.grid._RepositoryTie.fileById(_RepositoryTie.java:78)
11:34:26 E at omero.grid._RepositoryDisp.___fileById(_RepositoryDisp.java:393)
11:34:26 E at omero.grid._RepositoryDisp.__dispatch(_RepositoryDisp.java:538)
11:34:26 E at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 E at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 E at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 E
11:34:26 E }
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_RawFileStore_ice.py:200: UnknownException
11:34:26 _________________________ TestRFS.testTicket1961Basic __________________________
11:34:26 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fd53e7659a0>
11:34:26 @pytest.mark.broken(ticket="11534")
11:34:26 def testTicket1961Basic(self):
11:34:26 ofile = self.file()
11:34:26 rfs = self.client.sf.createRawFileStore()
11:34:26 rfs.setFileId(ofile.id.val)
11:34:26 rfs.write([0, 1, 2, 3], 0, 4)
11:34:26 rfs.close()
11:34:26 > self.check_file(ofile)
11:34:26 test/integration/test_rawfilestore.py:49:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fd53e7659a0>
11:34:26 ofile = object #0 (::omero::model::OriginalFile)
11:34:26 {
11:34:26 _id = object #1 (::omero::RLong)
11:34:26 {
11:34:26 _val = 6207
11:34:26 }
11:34:26 _d...annotationLinksCountPerOwner =
11:34:26 {
11:34:26 }
11:34:26 _name = object #26 (::omero::RString)
11:34:26 {
11:34:26 _val = test
11:34:26 }
11:34:26 }
11:34:26 client = <omero.clients.BaseClient object at 0x7fd52f113130>
11:34:26 def check_file(self, ofile, client=None):
11:34:26 if client is None:
11:34:26 client = self.client
11:34:26 query = client.sf.getQueryService()
11:34:26 ofile = query.get("OriginalFile", ofile.id.val)
11:34:26 assert ofile.size.val != -1
11:34:26 > assert ofile.hash.val != ""
11:34:26 E AssertionError: assert '' != ''
11:34:26 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
11:34:26 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6207\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4741\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3685\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1727955169938\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
11:34:26 test/integration/test_rawfilestore.py:40: AssertionError
11:34:26 ____________________ TestRFS.testTicket1961WithKillSession _____________________
11:34:26 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fd53e6f8100>
11:34:26 @pytest.mark.broken(ticket="11534")
11:34:26 def testTicket1961WithKillSession(self):
11:34:26 ofile = self.file()
11:34:26 grp = self.ctx.groupName
11:34:26 session = self.client.sf.getSessionService().createUserSession(
11:34:26 1 * 1000, 10000, grp)
11:34:26 properties = self.client.getPropertyMap()
11:34:26 c = omero.client(properties)
11:34:26 s = c.joinSession(session.uuid.val)
11:34:26 rfs = s.createRawFileStore()
11:34:26 rfs.setFileId(ofile.id.val)
11:34:26 rfs.write([0, 1, 2, 3], 0, 4)
11:34:26 c.killSession()
11:34:26 > self.check_file(ofile)
11:34:26 test/integration/test_rawfilestore.py:67:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fd53e6f8100>
11:34:26 ofile = object #0 (::omero::model::OriginalFile)
11:34:26 {
11:34:26 _id = object #1 (::omero::RLong)
11:34:26 {
11:34:26 _val = 6208
11:34:26 }
11:34:26 _d...annotationLinksCountPerOwner =
11:34:26 {
11:34:26 }
11:34:26 _name = object #26 (::omero::RString)
11:34:26 {
11:34:26 _val = test
11:34:26 }
11:34:26 }
11:34:26 client = <omero.clients.BaseClient object at 0x7fd52f113130>
11:34:26 def check_file(self, ofile, client=None):
11:34:26 if client is None:
11:34:26 client = self.client
11:34:26 query = client.sf.getQueryService()
11:34:26 ofile = query.get("OriginalFile", ofile.id.val)
11:34:26 assert ofile.size.val != -1
11:34:26 > assert ofile.hash.val != ""
11:34:26 E AssertionError: assert '' != ''
11:34:26 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
11:34:26 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6208\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4741\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3685\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1727955170026\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
11:34:26 test/integration/test_rawfilestore.py:40: AssertionError
11:34:26 __________________________ TestRFS.testTicket2161Save __________________________
11:34:26 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fd53e6f84c0>
11:34:26 @pytest.mark.broken(ticket="11534")
11:34:26 def testTicket2161Save(self):
11:34:26 ofile = self.file()
11:34:26 rfs = self.client.sf.createRawFileStore()
11:34:26 rfs.setFileId(ofile.id.val)
11:34:26 rfs.write([0, 1, 2, 3], 0, 4)
11:34:26 ofile = rfs.save()
11:34:26 > self.check_file(ofile)
11:34:26 test/integration/test_rawfilestore.py:76:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fd53e6f84c0>
11:34:26 ofile = object #0 (::omero::model::OriginalFile)
11:34:26 {
11:34:26 _id = object #1 (::omero::RLong)
11:34:26 {
11:34:26 _val = 6209
11:34:26 }
11:34:26 _d...annotationLinksCountPerOwner =
11:34:26 {
11:34:26 }
11:34:26 _name = object #26 (::omero::RString)
11:34:26 {
11:34:26 _val = test
11:34:26 }
11:34:26 }
11:34:26 client = <omero.clients.BaseClient object at 0x7fd52f113130>
11:34:26 def check_file(self, ofile, client=None):
11:34:26 if client is None:
11:34:26 client = self.client
11:34:26 query = client.sf.getQueryService()
11:34:26 ofile = query.get("OriginalFile", ofile.id.val)
11:34:26 assert ofile.size.val != -1
11:34:26 > assert ofile.hash.val != ""
11:34:26 E AssertionError: assert '' != ''
11:34:26 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
11:34:26 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6209\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4741\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3685\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1727955170065\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
11:34:26 test/integration/test_rawfilestore.py:40: AssertionError
11:34:26 _____________________________ TestRFS.testNoWrite ______________________________
11:34:26 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fd53e6f8880>
11:34:26 @pytest.mark.broken(ticket="11534")
11:34:26 def testNoWrite(self):
11:34:26 group = self.new_group(perms="rwr---")
11:34:26 client1 = self.new_client(group=group)
11:34:26 client2 = self.new_client(group=group)
11:34:26 ofile = self.file(client=client1)
11:34:26 rfs = client1.sf.createRawFileStore()
11:34:26 rfs.setFileId(ofile.id.val)
11:34:26 rfs.write(b"0123", 0, 4)
11:34:26 rfs.close()
11:34:26 > self.check_file(ofile, client=client1)
11:34:26 test/integration/test_rawfilestore.py:94:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = <test.integration.test_rawfilestore.TestRFS object at 0x7fd53e6f8880>
11:34:26 ofile = object #0 (::omero::model::OriginalFile)
11:34:26 {
11:34:26 _id = object #1 (::omero::RLong)
11:34:26 {
11:34:26 _val = 6210
11:34:26 }
11:34:26 _d...annotationLinksCountPerOwner =
11:34:26 {
11:34:26 }
11:34:26 _name = object #26 (::omero::RString)
11:34:26 {
11:34:26 _val = test
11:34:26 }
11:34:26 }
11:34:26 client = <omero.clients.BaseClient object at 0x7fd536ddf940>
11:34:26 def check_file(self, ofile, client=None):
11:34:26 if client is None:
11:34:26 client = self.client
11:34:26 query = client.sf.getQueryService()
11:34:26 ofile = query.get("OriginalFile", ofile.id.val)
11:34:26 assert ofile.size.val != -1
11:34:26 > assert ofile.hash.val != ""
11:34:26 E AssertionError: assert '' != ''
11:34:26 E + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
11:34:26 E + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6210\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4742\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3686\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1727955175326\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
11:34:26 test/integration/test_rawfilestore.py:40: AssertionError
11:34:26 __________________ TestRepoRawFileStore.testFailedWriteNoFile __________________
11:34:26 self = <test.integration.test_reporawfilestore.TestRepoRawFileStore object at 0x7fd53e720040>
11:34:26 @pytest.mark.broken(ticket="11610")
11:34:26 def testFailedWriteNoFile(self):
11:34:26 # Without a single write, no file is produced
11:34:26 rfs = self.repoPrx.file(self.repo_filename, "rw") # create empty file
11:34:26 rfs.close()
11:34:26 rfs = self.repoPrx.file(self.repo_filename, "r")
11:34:26 with pytest.raises(omero.ResourceError):
11:34:26 > rfs.size()
11:34:26 E Failed: DID NOT RAISE <class 'omero.ResourceError'>
11:34:26 test/integration/test_reporawfilestore.py:68: Failed
11:34:26 ______________________ TestScripts.testAutoFillTicket2326 ______________________
11:34:26 self = <test.integration.test_scripts.TestScripts object at 0x7fd53e6e0400>
11:34:26 @pytest.mark.broken(ticket="11539")
11:34:26 def testAutoFillTicket2326(self):
11:34:26 SCRIPT = """if True:
11:34:26 import omero.scripts
11:34:26 import omero.rtypes
11:34:26 client = omero.scripts.client(
11:34:26 "ticket2326", omero.scripts.Long("width", optional=True))
11:34:26 width = client.getInput("width")
11:34:26 print(width)
11:34:26 client.setOutput(
11:34:26 "noWidthKey",
11:34:26 omero.rtypes.rbool("width" not in client.getInputKeys()))
11:34:26 client.setOutput("widthIsNull", omero.rtypes.rbool(width is None))
11:34:26 """
11:34:26 impl = omero.processor.usermode_processor(self.client)
11:34:26 svc = self.client.sf.getScriptService()
11:34:26 try:
11:34:26 scriptID = svc.uploadScript("/test/testAutoFillTicket2326", SCRIPT)
11:34:26 > process = svc.runScript(scriptID, {}, None)
11:34:26 test/integration/test_scripts.py:378:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = 08e5ee03-6641-464f-86a0-97842777bd71/7974a009-1e9c-4750-8f3b-a80366ce4267omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 scriptID = 6215, inputs = {}, waitSecs = None, _ctx = None
11:34:26 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
11:34:26 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
11:34:26 E omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
11:34:26 E {
11:34:26 E serverStackTrace =
11:34:26 E serverExceptionClass =
11:34:26 E message = No processor available! [0 response(s)]
11:34:26 E processorCount = 0
11:34:26 E }
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: NoProcessorAvailable
11:34:26 ------------------------------ Captured log call -------------------------------
11:34:26 INFO omero.util.Resources:__init__.py:652 Starting
11:34:26 INFO omero.processor.ProcessorI:processor.py:814 Registering processor W4vwP}FmqPAYr1W,3!E</UsermodeProcessor-755af753-8374-42ea-b153-51c6fb71267f -t -e 1.1:tcp -h 127.0.0.1 -p 45755 -t 60000
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4745, group=3688, script=4954
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
11:34:26 file, handle = self.lookup(scriptContext)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
11:34:26 file = prx.validateScript(job, self.accepts_list)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
11:34:26 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
11:34:26 omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
11:34:26 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
11:34:26 at ome.services.throttling.Callback2.run(Callback2.java:43)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
11:34:26 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor657.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy105.validateScript_async(Unknown Source)
11:34:26 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
11:34:26 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
11:34:26 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = Found wrong number of files: []
11:34:26 }
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4745, group=3688, script=4954
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
11:34:26 file, handle = self.lookup(scriptContext)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
11:34:26 file = prx.validateScript(job, self.accepts_list)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
11:34:26 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
11:34:26 omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
11:34:26 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
11:34:26 at ome.services.throttling.Callback2.run(Callback2.java:43)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
11:34:26 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor657.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy105.validateScript_async(Unknown Source)
11:34:26 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
11:34:26 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
11:34:26 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = Found wrong number of files: []
11:34:26 }
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4745, group=3688, script=4955
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
11:34:26 file, handle = self.lookup(scriptContext)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
11:34:26 file = prx.validateScript(job, self.accepts_list)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
11:34:26 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
11:34:26 omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
11:34:26 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
11:34:26 at ome.services.throttling.Callback2.run(Callback2.java:43)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
11:34:26 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor657.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy105.validateScript_async(Unknown Source)
11:34:26 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
11:34:26 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
11:34:26 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = Found wrong number of files: []
11:34:26 }
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4745, group=3688, script=4955
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
11:34:26 file, handle = self.lookup(scriptContext)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
11:34:26 file = prx.validateScript(job, self.accepts_list)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
11:34:26 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
11:34:26 omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
11:34:26 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
11:34:26 at ome.services.throttling.Callback2.run(Callback2.java:43)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
11:34:26 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor657.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy105.validateScript_async(Unknown Source)
11:34:26 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
11:34:26 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
11:34:26 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = Found wrong number of files: []
11:34:26 }
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 INFO omero.processor.ProcessorI:__init__.py:597 Cleaning up
11:34:26 INFO omero.processor.ProcessorI:__init__.py:599 Done
11:34:26 ______________ TestScripts.testParamLoadingPerformanceTicket2285 _______________
11:34:26 self = <test.integration.test_scripts.TestScripts object at 0x7fd53e76eb50>
11:34:26 @pytest.mark.broken(reason="Minor performance failure", ticket="11539")
11:34:26 def testParamLoadingPerformanceTicket2285(self):
11:34:26 root_client = self.new_client(system=True)
11:34:26 svc = root_client.sf.getScriptService()
11:34:26 SCRIPT = """if True:
11:34:26 import omero.model as OM
11:34:26 import omero.rtypes as OR
11:34:26 import omero.scripts as OS
11:34:26 c = OS.client("perf test",
11:34:26 OS.Long("a", min=0, max=5),
11:34:26 OS.String("b", values=("a","b","c")),
11:34:26 OS.List("c").ofType(OM.ImageI))
11:34:26 """
11:34:26 upload_time, scriptID = self.timeit(
11:34:26 svc.uploadOfficialScript, "/test/perf%s.py" % self.uuid(), SCRIPT)
11:34:26 impl = omero.processor.usermode_processor(root_client)
11:34:26 try:
11:34:26 params_time, params = self.timeit(svc.getParams, scriptID)
11:34:26 assert params_time < (upload_time / 10), \
11:34:26 "upload_time(%s) <= 10 * params_time(%s)!" % \
11:34:26 (upload_time, params_time)
11:34:26 assert params_time < 0.1, "params_time(%s) >= 0.01 !" % params_time
11:34:26 > run_time, process = self.timeit(
11:34:26 svc.runScript, scriptID, wrap({"a": int(5)}).val, None)
11:34:26 test/integration/test_scripts.py:417:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero/testlib/__init__.py:612: in timeit
11:34:26 rv = func(*args, **kwargs)
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = ed2e75a7-85d8-4302-a2e6-8b05d3142eba/dc2dd3ef-d02e-4d6f-84c3-1abb553ab417omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 scriptID = 6216, inputs = {'a': object #0 (::omero::RInt)
11:34:26 {
11:34:26 _val = 5
11:34:26 }}
11:34:26 waitSecs = None, _ctx = None
11:34:26 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
11:34:26 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
11:34:26 E omero.ValidationException: exception ::omero::ValidationException
11:34:26 E {
11:34:26 E serverStackTrace =
11:34:26 E serverExceptionClass =
11:34:26 E message = Invalid parameters:
11:34:26 E WRONG TYPE for "a": <class 'omero.rtypes.RIntI'> != <class 'omero.rtypes.RLongI'>
11:34:26 E
11:34:26 E }
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: ValidationException
11:34:26 ------------------------------ Captured log call -------------------------------
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4746, group=3689, script=4956
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 858, in willAccept
11:34:26 handle.close()
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_ServicesF_ice.py", line 287, in close
11:34:26 return _M_omero.api.StatefulServiceInterface._op_close.invoke(self, ((), _ctx))
11:34:26 omero.SecurityViolation: exception ::omero::SecurityViolation
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.SecurityViolation: User 4745 is not a member of group 3689 and cannot login
11:34:26 at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:514)
11:34:26 at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
11:34:26 at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy103.close(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor589.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy103.close(Unknown Source)
11:34:26 at ome.services.blitz.impl.AbstractCloseableAmdServant.close_async(AbstractCloseableAmdServant.java:90)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor612.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy104.close_async(Unknown Source)
11:34:26 at omero.api._JobHandleTie.close_async(_JobHandleTie.java:144)
11:34:26 at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:185)
11:34:26 at omero.api._JobHandleDisp.__dispatch(_JobHandleDisp.java:597)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.SecurityViolation
11:34:26 message = User 4745 is not a member of group 3689 and cannot login
11:34:26 }
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'bool'>
11:34:26 INFO omero.util.Resources:__init__.py:652 Starting
11:34:26 INFO omero.processor.ProcessorI:processor.py:814 Registering processor .*y9!)v%b|}VA<,EV[ya/UsermodeProcessor-8fe59148-d09f-46ad-9c8b-0ab08db043a8 -t -e 1.1:tcp -h 127.0.0.1 -p 45755 -t 60000
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4746, group=3689, script=4957
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 858, in willAccept
11:34:26 handle.close()
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_ServicesF_ice.py", line 287, in close
11:34:26 return _M_omero.api.StatefulServiceInterface._op_close.invoke(self, ((), _ctx))
11:34:26 omero.SecurityViolation: exception ::omero::SecurityViolation
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.SecurityViolation: User 4745 is not a member of group 3689 and cannot login
11:34:26 at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:514)
11:34:26 at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
11:34:26 at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy103.close(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor589.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy103.close(Unknown Source)
11:34:26 at ome.services.blitz.impl.AbstractCloseableAmdServant.close_async(AbstractCloseableAmdServant.java:90)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor612.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy104.close_async(Unknown Source)
11:34:26 at omero.api._JobHandleTie.close_async(_JobHandleTie.java:144)
11:34:26 at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:185)
11:34:26 at omero.api._JobHandleDisp.__dispatch(_JobHandleDisp.java:597)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.SecurityViolation
11:34:26 message = User 4745 is not a member of group 3689 and cannot login
11:34:26 }
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4746, group=3689, script=4957
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
11:34:26 file, handle = self.lookup(scriptContext)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
11:34:26 file = prx.validateScript(job, self.accepts_list)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
11:34:26 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
11:34:26 omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
11:34:26 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
11:34:26 at ome.services.throttling.Callback2.run(Callback2.java:43)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
11:34:26 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor657.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy105.validateScript_async(Unknown Source)
11:34:26 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
11:34:26 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
11:34:26 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = Found wrong number of files: []
11:34:26 }
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'bool'>
11:34:26 INFO omero.processor.ProcessorI:__init__.py:597 Cleaning up
11:34:26 INFO omero.processor.ProcessorI:__init__.py:599 Done
11:34:26 _____________________________ TestScripts.test3527 _____________________________
11:34:26 self = <test.integration.test_scripts.TestScripts object at 0x7fd53e68da30>
11:34:26 @pytest.mark.broken(ticket="11610")
11:34:26 def test3527(self):
11:34:26 SCRIPT = """if True:
11:34:26 import omero.scripts
11:34:26 import omero.rtypes
11:34:26 client = omero.scripts.client("ticket3527", \
11:34:26 omero.scripts.Long("gid", out=True))
11:34:26 ec = client.sf.getAdminService().getEventContext()
11:34:26 gid = ec.groupId
11:34:26 client.setOutput("gid", omero.rtypes.rlong(gid))
11:34:26 """
11:34:26 impl = omero.processor.usermode_processor(self.client)
11:34:26 svc = self.client.sf.getScriptService()
11:34:26 try:
11:34:26 scriptID = svc.uploadScript("/test/test3527", SCRIPT)
11:34:26 > process = svc.runScript(scriptID, {}, None)
11:34:26 test/integration/test_scripts.py:521:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = 08e5ee03-6641-464f-86a0-97842777bd71/7974a009-1e9c-4750-8f3b-a80366ce4267omero.api.IScript -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 scriptID = 6218, inputs = {}, waitSecs = None, _ctx = None
11:34:26 def runScript(self, scriptID, inputs, waitSecs, _ctx=None):
11:34:26 > return _M_omero.api.IScript._op_runScript.invoke(self, ((scriptID, inputs, waitSecs), _ctx))
11:34:26 E omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
11:34:26 E {
11:34:26 E serverStackTrace =
11:34:26 E serverExceptionClass =
11:34:26 E message = No processor available! [0 response(s)]
11:34:26 E processorCount = 0
11:34:26 E }
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py:935: NoProcessorAvailable
11:34:26 ------------------------------ Captured log call -------------------------------
11:34:26 INFO omero.util.Resources:__init__.py:652 Starting
11:34:26 INFO omero.processor.ProcessorI:processor.py:814 Registering processor W4vwP}FmqPAYr1W,3!E</UsermodeProcessor-8550a5cb-49cb-4eb1-9a98-93ca154c7c71 -t -e 1.1:tcp -h 127.0.0.1 -p 45755 -t 60000
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4745, group=3688, script=4958
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
11:34:26 file, handle = self.lookup(scriptContext)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
11:34:26 file = prx.validateScript(job, self.accepts_list)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
11:34:26 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
11:34:26 omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
11:34:26 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
11:34:26 at ome.services.throttling.Callback2.run(Callback2.java:43)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
11:34:26 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor657.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy105.validateScript_async(Unknown Source)
11:34:26 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
11:34:26 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
11:34:26 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = Found wrong number of files: []
11:34:26 }
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4745, group=3688, script=4958
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
11:34:26 file, handle = self.lookup(scriptContext)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
11:34:26 file = prx.validateScript(job, self.accepts_list)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
11:34:26 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
11:34:26 omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
11:34:26 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
11:34:26 at ome.services.throttling.Callback2.run(Callback2.java:43)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
11:34:26 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor657.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy105.validateScript_async(Unknown Source)
11:34:26 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
11:34:26 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
11:34:26 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = Found wrong number of files: []
11:34:26 }
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4745, group=3688, script=4958
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
11:34:26 file, handle = self.lookup(scriptContext)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
11:34:26 file = prx.validateScript(job, self.accepts_list)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
11:34:26 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
11:34:26 omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
11:34:26 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
11:34:26 at ome.services.throttling.Callback2.run(Callback2.java:43)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
11:34:26 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor657.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy105.validateScript_async(Unknown Source)
11:34:26 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
11:34:26 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
11:34:26 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = Found wrong number of files: []
11:34:26 }
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4745, group=3688, script=4958
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
11:34:26 file, handle = self.lookup(scriptContext)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
11:34:26 file = prx.validateScript(job, self.accepts_list)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
11:34:26 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
11:34:26 omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
11:34:26 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
11:34:26 at ome.services.throttling.Callback2.run(Callback2.java:43)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
11:34:26 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor657.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy105.validateScript_async(Unknown Source)
11:34:26 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
11:34:26 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
11:34:26 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = Found wrong number of files: []
11:34:26 }
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 INFO omero.remote:decorators.py:70 Meth: ProcessorI.willAccept
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4745, group=3688, script=4959
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
11:34:26 file, handle = self.lookup(scriptContext)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
11:34:26 file = prx.validateScript(job, self.accepts_list)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
11:34:26 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
11:34:26 omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
11:34:26 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
11:34:26 at ome.services.throttling.Callback2.run(Callback2.java:43)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
11:34:26 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor657.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy105.validateScript_async(Unknown Source)
11:34:26 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
11:34:26 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
11:34:26 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = Found wrong number of files: []
11:34:26 }
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4745, group=3688, script=4959
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
11:34:26 file, handle = self.lookup(scriptContext)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
11:34:26 file = prx.validateScript(job, self.accepts_list)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
11:34:26 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
11:34:26 omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
11:34:26 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
11:34:26 at ome.services.throttling.Callback2.run(Callback2.java:43)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
11:34:26 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor657.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy105.validateScript_async(Unknown Source)
11:34:26 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
11:34:26 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
11:34:26 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = Found wrong number of files: []
11:34:26 }
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4745, group=3688, script=4959
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
11:34:26 file, handle = self.lookup(scriptContext)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
11:34:26 file = prx.validateScript(job, self.accepts_list)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
11:34:26 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
11:34:26 omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
11:34:26 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
11:34:26 at ome.services.throttling.Callback2.run(Callback2.java:43)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
11:34:26 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor657.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy105.validateScript_async(Unknown Source)
11:34:26 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
11:34:26 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
11:34:26 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = Found wrong number of files: []
11:34:26 }
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 ERROR omero.processor.ProcessorI:processor.py:861 File lookup failed: user=4745, group=3688, script=4959
11:34:26 Traceback (most recent call last):
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 857, in willAccept
11:34:26 file, handle = self.lookup(scriptContext)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 829, in lookup
11:34:26 file = prx.validateScript(job, self.accepts_list)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/processor.py", line 40, in handler
11:34:26 return func(*args, **kwargs)
11:34:26 File "/home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero_api_IScript_ice.py", line 1065, in validateScript
11:34:26 return _M_omero.api.IScript._op_validateScript.invoke(self, ((j, acceptsList), _ctx))
11:34:26 omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: Found wrong number of files: []
11:34:26 at ome.services.blitz.impl.ScriptI$15$1.doWork(ScriptI.java:577)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor267.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:568)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.impl.ScriptI$15.call(ScriptI.java:570)
11:34:26 at ome.services.throttling.Callback2.run(Callback2.java:43)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:159)
11:34:26 at ome.services.blitz.impl.ScriptI.validateScript_async(ScriptI.java:553)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor657.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy105.validateScript_async(Unknown Source)
11:34:26 at omero.api._IScriptTie.validateScript_async(_IScriptTie.java:144)
11:34:26 at omero.api._IScriptDisp.___validateScript(_IScriptDisp.java:704)
11:34:26 at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:819)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = Found wrong number of files: []
11:34:26 }
11:34:26 INFO omero.remote:decorators.py:75 Rslt: <class 'NoneType'>
11:34:26 INFO omero.processor.ProcessorI:__init__.py:597 Cleaning up
11:34:26 INFO omero.processor.ProcessorI:__init__.py:599 Done
11:34:26 _______________ TestThumbnailPerms.testPrivate10618RootWithNoCtx _______________
11:34:26 self = <test.integration.test_thumbnailPerms.TestThumbnailPerms object at 0x7fd53e683490>
11:34:26 @pytest.mark.broken(reason="requires thumbnail work")
11:34:26 def testPrivate10618RootWithNoCtx(self):
11:34:26 """
11:34:26 This would require the server to try omero.group=-1
11:34:26 for the user.
11:34:26 """
11:34:26 group = self.new_group(perms="rw----")
11:34:26 > self.assert10618(group, self.root, True)
11:34:26 test/integration/test_thumbnailPerms.py:256:
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 test/integration/test_thumbnailPerms.py:217: in assert10618
11:34:26 s = tb_prx.getThumbnailByLongestSideSet(rint(16), [pId], *ctx)
11:34:26 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
11:34:26 self = 5595da02-3b61-4645-bc9e-3260fd901b34/639c4d9e-235f-4518-ac5f-d08f08f4e4f4omero.api.ThumbnailStore -t -e 1.1:tcp -h 172.18.0.10 -p 39561 -t 60000
11:34:26 size = object #0 (::omero::RInt)
11:34:26 {
11:34:26 _val = 16
11:34:26 }, pixelsIds = [2901]
11:34:26 _ctx = None
11:34:26 def getThumbnailByLongestSideSet(self, size, pixelsIds, _ctx=None):
11:34:26 > return _M_omero.api.ThumbnailStore._op_getThumbnailByLongestSideSet.invoke(self, ((size, pixelsIds), _ctx))
11:34:26 E omero.ResourceError: exception ::omero::ResourceError
11:34:26 E {
11:34:26 E serverStackTrace = ome.conditions.ResourceError: Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
11:34:26 E at ome.services.ThumbnailCtx.isExtendedGraphCritical(ThumbnailCtx.java:749)
11:34:26 E at ome.services.ThumbnailCtx.createAndPrepareMissingRenderingSettings(ThumbnailCtx.java:388)
11:34:26 E at ome.services.ThumbnailBean.getThumbnailByLongestSideSet(ThumbnailBean.java:1003)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor3881.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
11:34:26 E at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 E at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 E at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor3881.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor3886.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 E at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 E at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 E at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 E at ome.services.blitz.impl.ThumbnailStoreI.getThumbnailByLongestSideSet_async(ThumbnailStoreI.java:83)
11:34:26 E at jdk.internal.reflect.GeneratedMethodAccessor3885.invoke(Unknown Source)
11:34:26 E at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 E at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 E at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 E at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 E at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 E at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 E at com.sun.proxy.$Proxy114.getThumbnailByLongestSideSet_async(Unknown Source)
11:34:26 E at omero.api._ThumbnailStoreTie.getThumbnailByLongestSideSet_async(_ThumbnailStoreTie.java:132)
11:34:26 E at omero.api._ThumbnailStoreDisp.___getThumbnailByLongestSideSet(_ThumbnailStoreDisp.java:743)
11:34:26 E at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:1088)
11:34:26 E at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 E at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 E at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 E at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 E at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 E at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 E at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 E at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 E
11:34:26 E serverExceptionClass = ome.conditions.ResourceError
11:34:26 E message = Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
11:34:26 E }
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/omero_api_ThumbnailStore_ice.py:730: ResourceError
11:34:26 ___________________________ TestTickets2000.test1184 ___________________________
11:34:26 self = <test.integration.test_tickets2000.TestTickets2000 object at 0x7fd53e60fbe0>
11:34:26 @pytest.mark.broken(ticket="11543")
11:34:26 def test1184(self):
11:34:26 uuid = self.uuid()
11:34:26 client = self.new_client(perms="rw----")
11:34:26 query = client.sf.getQueryService()
11:34:26 update = client.sf.getUpdateService()
11:34:26 admin = client.sf.getAdminService()
11:34:26 cont = client.sf.getContainerService()
11:34:26 ds = self.new_dataset(name='test1184-ds-%s' % (uuid))
11:34:26 for i in range(1, 2001):
11:34:26 img = self.new_image(name='img1184-%s' % (uuid))
11:34:26 ds.linkImage(img)
11:34:26 ds = update.saveAndReturnObject(ds)
11:34:26 c = cont.getCollectionCount(
11:34:26 ds.__class__.__name__, ("imageLinks"), [ds.id.val], None)
11:34:26 assert c[ds.id.val] == 2000
11:34:26 page = 1
11:34:26 p = omero.sys.Parameters()
11:34:26 p.map = {}
11:34:26 p.map["eid"] = rlong(admin.getEventContext().userId)
11:34:26 p.map["oid"] = rlong(ds.id.val)
11:34:26 if page is not None:
11:34:26 f = omero.sys.Filter()
11:34:26 f.limit = rint(24)
11:34:26 f.offset = rint((int(page) - 1) * 24)
11:34:26 p.theFilter = f
11:34:26 sql = "select im from Image im join fetch im.details.owner " \
11:34:26 "join fetch im.details.group left outer join fetch " \
11:34:26 "im.datasetLinks dil left outer join fetch dil.parent d " \
11:34:26 "where d.id = :oid and im.details.owner.id=:eid " \
11:34:26 "order by im.id asc"
11:34:26 start = time.time()
11:34:26 res = query.findAllByQuery(sql, p)
11:34:26 assert 24 == len(res)
11:34:26 end = time.time()
11:34:26 elapsed = end - start
11:34:26 > assert elapsed < 3.0, \
11:34:26 "Expected the test to complete in < 3 seconds, took: %f" % elapsed
11:34:26 E AssertionError: Expected the test to complete in < 3 seconds, took: 10.921309
11:34:26 E assert 10.921308517456055 < 3.0
11:34:26 test/integration/test_tickets2000.py:370: AssertionError
11:34:26 =============================== warnings summary ===============================
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/Ice.py:14
11:34:26 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/Ice.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
11:34:26 import sys, string, imp, os, threading, warnings, datetime
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241
11:34:26 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:241: RemovedInDjango50Warning: The default value of USE_TZ will change from False to True in Django 5.0. Set USE_TZ to False in your project settings if you want to keep the current default behavior.
11:34:26 warnings.warn(
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289
11:34:26 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/django/conf/__init__.py:289: RemovedInDjango51Warning: The STATICFILES_STORAGE setting is deprecated. Use STORAGES instead.
11:34:26 warnings.warn(STATICFILES_STORAGE_DEPRECATED_MSG, RemovedInDjango51Warning)
11:34:26 ../../../../.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1
11:34:26 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/pipeline/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
11:34:26 from pkg_resources import DistributionNotFound, get_distribution
11:34:26 OmeroPy/test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Dataset-test.fake--d]
11:34:26 OmeroPy/test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r]
11:34:26 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/plugins/sessions.py:176: DeprecationWarning: OMERO_SESSION_DIR is deprecated. Use OMERO_SESSIONDIR instead.
11:34:26 warnings.warn(
11:34:26 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory
11:34:26 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory
11:34:26 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript
11:34:26 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript
11:34:26 OmeroPy/test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript
11:34:26 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/gateway/__init__.py:4810: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:34:26 logger.warn("%s on %s to <%s> %s(%r, %r)",
11:34:26 OmeroPy/test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithNoCtx
11:34:26 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.9/site-packages/omero/util/script_utils.py:1093: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
11:34:26 converted_plane = byte_swapped_plane.tostring()
11:34:26 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
11:34:26 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/target/reports/broken/junit-results.xml -
11:34:26 =========================== short test summary info ============================
11:34:26 FAILED test/integration/clitest/test_fs.py::TestFS::testRenameAdminOnly - AssertionError: assert False
11:34:26 + where False = <built-in method endswith of str object at 0x7fd53e5b5ea0>('SecurityViolation: Admins only!\n')
11:34:26 + where <built-in method endswith of str object at 0x7fd53e5b5ea0> = 'disabled since OMERO 5.4.7 due to Pixels.path bug\n'.endswith
11:34:26 FAILED test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Dataset-test.fake--d] - omero.cli.NonZeroReturnCode: assert failed
11:34:26 FAILED test/integration/clitest/test_import.py::TestImport::testTargetInDifferentGroup[Screen-SPW&plates=1&plateRows=1&plateCols=1&fields=1&plateAcqs=1.fake--r] - omero.cli.NonZeroReturnCode: assert failed
11:34:26 FAILED test/integration/gatewaytest/test_multi_group.py::TestHistory::testCreateHistory - AssertionError: Logs count should match number of objects
11:34:26 assert 1 == 0
11:34:26 FAILED test/integration/gatewaytest/test_multi_group.py::TestScript::testRunScript - omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
11:34:26 {
11:34:26 serverStackTrace =
11:34:26 serverExceptionClass =
11:34:26 message = No processor available! [0 response(s)]
11:34:26 processorCount = 0
11:34:26 }
11:34:26 FAILED test/integration/gatewaytest/test_performance.py::TestPerformance::testListFileAnnotations - AssertionError: Blitz listFileAnnotations() should be faster than getObjects('FileAnnotation')
11:34:26 assert 0.22876262664794922 < 0.2202303409576416
11:34:26 FAILED test/integration/gatewaytest/test_user.py::TestUser::testCrossGroupRead - assert not 2719 in [2718, 1, 2730, 2719, 2785]
11:34:26 + where 2719 = getId()
11:34:26 + where getId = <_ExperimenterGroupWrapper id=2719>.getId
11:34:26 + and [2718, 1, 2730, 2719, 2785] = object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10317\n sessionUuid = 205b1ecf-62a4-4f6a-b638-2183ded6872d\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2785\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n}.memberOfGroups
11:34:26 + where object #0 (::omero::sys::EventContext)\n{\n shareId = -1\n sessionId = 10317\n sessionUuid = 205b1ecf-62a4-4f6a-b638-2183ded6872d\n userId = 3728\n userName = weblitz_test_user\n sudoerId = <nil>\n sudoerName = <nil>\n groupId = 2718\n groupName = weblitz_test_user_group\n isAdmin = False\n adminPrivileges = \n {\n }\n eventId = -1\n eventType = Internal\n memberOfGroups = \n {\n [0] = 2718\n [1] = 1\n [2] = 2730\n [3] = 2719\n [4] = 2785\n }\n leaderOfGroups = \n {\n }\n groupPermissions = object #1 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n} = getEventContext()
11:34:26 + where getEventContext = <omero.gateway._BlitzGateway object at 0x7fd531fe05b0>.getEventContext
11:34:26 + where <omero.gateway._BlitzGateway object at 0x7fd531fe05b0> = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7fd531806040>.gateway
11:34:26 FAILED test/integration/scriptstest/test_ping.py::TestPing::testProcessCallback - assert 0 > 0
11:34:26 + where 0 = len([])
11:34:26 + where [] = object #0 (::omero::grid::ProcessCallback)\n{\n}.finish
11:34:26 FAILED test/integration/scriptstest/test_repo.py::TestScriptRepo::testGetGroupScripts - assert 6201 in []
11:34:26 FAILED test/integration/tablestest/test_service.py::TestTables::test2098 - AttributeError: type object 'path' has no attribute 'path'
11:34:26 FAILED test/integration/tablestest/test_service.py::TestTables::testReadOnlyFile - AttributeError: 'TestTables' object has no attribute 'unique_dir'
11:34:26 FAILED test/integration/tablestest/test_service.py::TestTables::testReadEqual - assert [1] == [1, 2, 3, 4, 5]
11:34:26 Right contains 4 more items, first extra item: 2
11:34:26 Full diff:
11:34:26 [
11:34:26 1,
11:34:26 - 2,
11:34:26 - 3,
11:34:26 - 4,
11:34:26 - 5,
11:34:26 ]
11:34:26 FAILED test/integration/tablestest/test_service.py::TestTables::testReadOutOfRange - assert [4] == [-1, 0, 1, 2, 3, 4]
11:34:26 At index 0 diff: 4 != -1
11:34:26 Right contains 5 more items, first extra item: 0
11:34:26 Full diff:
11:34:26 [
11:34:26 - -1,
11:34:26 - 0,
11:34:26 - 1,
11:34:26 - 2,
11:34:26 - 3,
11:34:26 4,
11:34:26 ]
11:34:26 FAILED test/integration/test_admin.py::TestAdmin::testChangePasswordWhenUnset - omero.SecurityViolation: exception ::omero::SecurityViolation
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.SecurityViolation: Old password is invalid
11:34:26 at ome.logic.AdminImpl.changePasswordWithOldPassword(AdminImpl.java:1253)
11:34:26 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
11:34:26 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy91.changePasswordWithOldPassword(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
11:34:26 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy91.changePasswordWithOldPassword(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
11:34:26 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 at ome.services.blitz.impl.AdminI.changePasswordWithOldPassword_async(AdminI.java:144)
11:34:26 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
11:34:26 at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy92.changePasswordWithOldPassword_async(Unknown Source)
11:34:26 at omero.api._IAdminTie.changePasswordWithOldPassword_async(_IAdminTie.java:112)
11:34:26 at omero.api._IAdminDisp.___changePasswordWithOldPassword(_IAdminDisp.java:1977)
11:34:26 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2229)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.SecurityViolation
11:34:26 message = Old password is invalid
11:34:26 }
11:34:26 FAILED test/integration/test_admin.py::TestAdmin::test9193 - omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ValidationException: experimenter cannot be a member of only the 'user' group, a different default group is also required
11:34:26 at ome.logic.AdminImpl.removeGroups(AdminImpl.java:813)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor596.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy91.removeGroups(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor596.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy91.removeGroups(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor3271.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 at ome.services.blitz.impl.AdminI.removeGroups_async(AdminI.java:318)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor3270.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy92.removeGroups_async(Unknown Source)
11:34:26 at omero.api._IAdminTie.removeGroups_async(_IAdminTie.java:312)
11:34:26 at omero.api._IAdminDisp.___removeGroups(_IAdminDisp.java:1621)
11:34:26 at omero.api._IAdminDisp.__dispatch(_IAdminDisp.java:2377)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ValidationException
11:34:26 message = experimenter cannot be a member of only the 'user' group, a different default group is also required
11:34:26 }
11:34:26 FAILED test/integration/test_files.py::TestFiles::testUploadDifferentSizeTicket2337 - omero.OptimisticLockException: exception ::omero::OptimisticLockException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.OptimisticLockException: You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124919 to ome.model.meta.Event:Id_124918
11:34:26 You may need to reload the object before continuing.
11:34:26 at ome.security.basic.OmeroInterceptor.managedEvent(OmeroInterceptor.java:1201)
11:34:26 at ome.security.basic.OmeroInterceptor.checkManagedDetails(OmeroInterceptor.java:963)
11:34:26 at ome.security.basic.OmeroInterceptor.resetDetails(OmeroInterceptor.java:465)
11:34:26 at ome.security.basic.OmeroInterceptor.onFlushDirty(OmeroInterceptor.java:239)
11:34:26 at org.hibernate.event.def.DefaultFlushEntityEventListener.invokeInterceptor(DefaultFlushEntityEventListener.java:372)
11:34:26 at org.hibernate.event.def.DefaultFlushEntityEventListener.handleInterception(DefaultFlushEntityEventListener.java:349)
11:34:26 at org.hibernate.event.def.DefaultFlushEntityEventListener.scheduleUpdate(DefaultFlushEntityEventListener.java:287)
11:34:26 at org.hibernate.event.def.DefaultFlushEntityEventListener.onFlushEntity(DefaultFlushEntityEventListener.java:155)
11:34:26 at org.hibernate.event.def.AbstractFlushingEventListener.flushEntities(AbstractFlushingEventListener.java:219)
11:34:26 at org.hibernate.event.def.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:99)
11:34:26 at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:50)
11:34:26 at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1216)
11:34:26 at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:342)
11:34:26 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:358)
11:34:26 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
11:34:26 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor1128.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor1127.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy95.saveAndReturnObject_async(Unknown Source)
11:34:26 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
11:34:26 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
11:34:26 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.OptimisticLockException
11:34:26 message = You are not authorized to change the update event for ome.model.core.OriginalFile:Id_6206 from ome.model.meta.Event:Id_124919 to ome.model.meta.Event:Id_124918
11:34:26 You may need to reload the object before continuing.
11:34:26 backOff = 0
11:34:26 }
11:34:26 FAILED test/integration/test_ishare.py::TestIShare::test1172 - assert 0 == 1
11:34:26 + where 0 = len([])
11:34:26 FAILED test/integration/test_itimeline.py::TestITimeline::test1225 - assert 6 == 10
11:34:26 + where 6 = len({1908, 1944, 1995, 9680, 13302, 41710})
11:34:26 FAILED test/integration/test_permissions.py::TestPermissions::test3136 - AssertionError: elapsed1=0.014236211776733398, elapsed2=0.014251470565795898
11:34:26 assert 0.014236211776733398 < (0.1 * 0.014251470565795898)
11:34:26 FAILED test/integration/test_permissions.py::TestPermissions::testSaveWithNegOneExplicit - omero.ApiUsageException: exception ::omero::ApiUsageException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
11:34:26 at ome.model.internal.Permissions.<init>(Permissions.java:164)
11:34:26 at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
11:34:26 at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
11:34:26 at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
11:34:26 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
11:34:26 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
11:34:26 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
11:34:26 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
11:34:26 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
11:34:26 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
11:34:26 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
11:34:26 at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
11:34:26 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
11:34:26 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
11:34:26 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
11:34:26 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
11:34:26 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor1128.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor1127.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy95.saveAndReturnObject_async(Unknown Source)
11:34:26 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
11:34:26 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
11:34:26 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ApiUsageException
11:34:26 message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
11:34:26 }
11:34:26 FAILED test/integration/test_permissions.py::TestPermissions::testSaveWithNegBadLink - omero.ApiUsageException: exception ::omero::ApiUsageException
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ApiUsageException: No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
11:34:26 at ome.model.internal.Permissions.<init>(Permissions.java:164)
11:34:26 at ome.security.basic.CurrentDetails.createDetails(CurrentDetails.java:439)
11:34:26 at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:700)
11:34:26 at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
11:34:26 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
11:34:26 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
11:34:26 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
11:34:26 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
11:34:26 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
11:34:26 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
11:34:26 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
11:34:26 at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
11:34:26 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
11:34:26 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
11:34:26 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
11:34:26 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
11:34:26 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor1128.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor1127.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy95.saveAndReturnObject_async(Unknown Source)
11:34:26 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
11:34:26 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
11:34:26 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ApiUsageException
11:34:26 message = No valid permissions available! DUMMY permissions are not intended for copying. Make sure that you have not passed omero.group=-1 for a save without context
11:34:26 }
11:34:26 FAILED test/integration/test_permissions.py::TestPermissions::testSaveBadLink - omero.SecurityViolation: exception ::omero::SecurityViolation
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.SecurityViolation: You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41865 to ome.model.meta.ExperimenterGroup:Id_3683
11:34:26 at ome.security.basic.OmeroInterceptor.newTransientDetails(OmeroInterceptor.java:785)
11:34:26 at ome.security.basic.OmeroInterceptor.onSave(OmeroInterceptor.java:187)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.substituteValuesIfNecessary(AbstractSaveEventListener.java:413)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:292)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:203)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:143)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.saveTransientEntity(DefaultMergeEventListener.java:415)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:341)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
11:34:26 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
11:34:26 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
11:34:26 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
11:34:26 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
11:34:26 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
11:34:26 at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
11:34:26 at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
11:34:26 at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
11:34:26 at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
11:34:26 at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.cascadeBeforeSave(AbstractSaveEventListener.java:450)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:336)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
11:34:26 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
11:34:26 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
11:34:26 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
11:34:26 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:877)
11:34:26 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:859)
11:34:26 at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
11:34:26 at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
11:34:26 at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
11:34:26 at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
11:34:26 at org.hibernate.engine.Cascade.cascadeCollectionElements(Cascade.java:425)
11:34:26 at org.hibernate.engine.Cascade.cascadeCollection(Cascade.java:362)
11:34:26 at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:338)
11:34:26 at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
11:34:26 at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
11:34:26 at org.hibernate.event.def.AbstractSaveEventListener.cascadeAfterSave(AbstractSaveEventListener.java:475)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:388)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:303)
11:34:26 at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:62)
11:34:26 at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:154)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:258)
11:34:26 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:87)
11:34:26 at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
11:34:26 at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:73)
11:34:26 at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:867)
11:34:26 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
11:34:26 at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:855)
11:34:26 at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:313)
11:34:26 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:138)
11:34:26 at ome.logic.UpdateImpl$2.run(UpdateImpl.java:135)
11:34:26 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:357)
11:34:26 at ome.logic.UpdateImpl.doAction(UpdateImpl.java:349)
11:34:26 at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:135)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor664.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy94.saveAndReturnObject(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor1128.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:62)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor1127.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy95.saveAndReturnObject_async(Unknown Source)
11:34:26 at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
11:34:26 at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:229)
11:34:26 at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:423)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.SecurityViolation
11:34:26 message = You are not authorized to set the ExperimenterGroup for ome.model.annotations.TagAnnotation:Id_41865 to ome.model.meta.ExperimenterGroup:Id_3683
11:34:26 }
11:34:26 FAILED test/integration/test_permissions.py::TestPermissions::testUseOfRawFileBeanScriptReadCorrectGroupAndUser - Ice.UnknownException: exception ::Ice::UnknownException
11:34:26 {
11:34:26 unknown = ome.conditions.SecurityViolation: User 4740 is not an admin and so cannot set uid to 0
11:34:26 at ome.security.basic.BasicEventContext.checkAndInitialize(BasicEventContext.java:141)
11:34:26 at ome.security.basic.CurrentDetails.checkAndInitialize(CurrentDetails.java:317)
11:34:26 at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:449)
11:34:26 at ome.security.basic.EventHandler.doLogin(EventHandler.java:210)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:146)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:119)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy74.doWork(Unknown Source)
11:34:26 at ome.services.util.Executor$Impl.execute(Executor.java:447)
11:34:26 at ome.services.blitz.repo.RepositoryDaoImpl.getFile(RepositoryDaoImpl.java:866)
11:34:26 at ome.services.blitz.repo.PublicRepositoryI.checkId(PublicRepositoryI.java:823)
11:34:26 at ome.services.blitz.repo.PublicRepositoryI.fileById(PublicRepositoryI.java:367)
11:34:26 at omero.grid._RepositoryTie.fileById(_RepositoryTie.java:78)
11:34:26 at omero.grid._RepositoryDisp.___fileById(_RepositoryDisp.java:393)
11:34:26 at omero.grid._RepositoryDisp.__dispatch(_RepositoryDisp.java:538)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 }
11:34:26 FAILED test/integration/test_rawfilestore.py::TestRFS::testTicket1961Basic - AssertionError: assert '' != ''
11:34:26 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
11:34:26 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6207\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4741\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3685\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1727955169938\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
11:34:26 FAILED test/integration/test_rawfilestore.py::TestRFS::testTicket1961WithKillSession - AssertionError: assert '' != ''
11:34:26 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
11:34:26 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6208\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4741\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3685\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1727955170026\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
11:34:26 FAILED test/integration/test_rawfilestore.py::TestRFS::testTicket2161Save - AssertionError: assert '' != ''
11:34:26 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
11:34:26 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6209\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4741\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3685\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1727955170065\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
11:34:26 FAILED test/integration/test_rawfilestore.py::TestRFS::testNoWrite - AssertionError: assert '' != ''
11:34:26 + where '' = object #0 (::omero::RString)\n{\n _val = \n}.val
11:34:26 + where object #0 (::omero::RString)\n{\n _val = \n} = object #0 (::omero::model::OriginalFile)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 6210\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 4742\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 3686\n }\n _details = object #7 (::... }\n groupPermissions = object #20 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -56\n }\n }\n }\n _loaded = True\n _version = <nil>\n _pixelsFileMapsSeq = \n {\n }\n _pixelsFileMapsLoaded = False\n _pixelsFileMapsCountPerOwner = \n {\n }\n _path = object #21 (::omero::RString)\n {\n _val = /tmp/test\n }\n _repo = <nil>\n _size = object #22 (::omero::RLong)\n {\n _val = 4\n }\n _atime = <nil>\n _mtime = object #23 (::omero::RTime)\n {\n _val = 1727955175326\n }\n _ctime = <nil>\n _hasher = <nil>\n _hash = object #24 (::omero::RString)\n {\n _val = \n }\n _mimetype = object #25 (::omero::RString)\n {\n _val = application/octet-stream\n }\n _filesetEntriesSeq = \n {\n }\n _filesetEntriesLoaded = True\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _name = object #26 (::omero::RString)\n {\n _val = test\n }\n}.hash
11:34:26 FAILED test/integration/test_reporawfilestore.py::TestRepoRawFileStore::testFailedWriteNoFile - Failed: DID NOT RAISE <class 'omero.ResourceError'>
11:34:26 FAILED test/integration/test_scripts.py::TestScripts::testAutoFillTicket2326 - omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
11:34:26 {
11:34:26 serverStackTrace =
11:34:26 serverExceptionClass =
11:34:26 message = No processor available! [0 response(s)]
11:34:26 processorCount = 0
11:34:26 }
11:34:26 FAILED test/integration/test_scripts.py::TestScripts::testParamLoadingPerformanceTicket2285 - omero.ValidationException: exception ::omero::ValidationException
11:34:26 {
11:34:26 serverStackTrace =
11:34:26 serverExceptionClass =
11:34:26 message = Invalid parameters:
11:34:26 WRONG TYPE for "a": <class 'omero.rtypes.RIntI'> != <class 'omero.rtypes.RLongI'>
11:34:26 }
11:34:26 FAILED test/integration/test_scripts.py::TestScripts::test3527 - omero.NoProcessorAvailable: exception ::omero::NoProcessorAvailable
11:34:26 {
11:34:26 serverStackTrace =
11:34:26 serverExceptionClass =
11:34:26 message = No processor available! [0 response(s)]
11:34:26 processorCount = 0
11:34:26 }
11:34:26 FAILED test/integration/test_thumbnailPerms.py::TestThumbnailPerms::testPrivate10618RootWithNoCtx - omero.ResourceError: exception ::omero::ResourceError
11:34:26 {
11:34:26 serverStackTrace = ome.conditions.ResourceError: Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
11:34:26 at ome.services.ThumbnailCtx.isExtendedGraphCritical(ThumbnailCtx.java:749)
11:34:26 at ome.services.ThumbnailCtx.createAndPrepareMissingRenderingSettings(ThumbnailCtx.java:388)
11:34:26 at ome.services.ThumbnailBean.getThumbnailByLongestSideSet(ThumbnailBean.java:1003)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor3881.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:216)
11:34:26 at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:200)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
11:34:26 at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:282)
11:34:26 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor3881.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:93)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy113.getThumbnailByLongestSideSet(Unknown Source)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor3886.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:172)
11:34:26 at ome.services.throttling.Callback.run(Callback.java:56)
11:34:26 at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
11:34:26 at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:140)
11:34:26 at ome.services.blitz.impl.ThumbnailStoreI.getThumbnailByLongestSideSet_async(ThumbnailStoreI.java:83)
11:34:26 at jdk.internal.reflect.GeneratedMethodAccessor3885.invoke(Unknown Source)
11:34:26 at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
11:34:26 at java.base/java.lang.reflect.Method.invoke(Method.java:566)
11:34:26 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
11:34:26 at omero.cmd.CallContext.invoke(CallContext.java:85)
11:34:26 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
11:34:26 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
11:34:26 at com.sun.proxy.$Proxy114.getThumbnailByLongestSideSet_async(Unknown Source)
11:34:26 at omero.api._ThumbnailStoreTie.getThumbnailByLongestSideSet_async(_ThumbnailStoreTie.java:132)
11:34:26 at omero.api._ThumbnailStoreDisp.___getThumbnailByLongestSideSet(_ThumbnailStoreDisp.java:743)
11:34:26 at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:1088)
11:34:26 at IceInternal.Incoming.invoke(Incoming.java:221)
11:34:26 at Ice.ConnectionI.invokeAll(ConnectionI.java:2536)
11:34:26 at Ice.ConnectionI.dispatch(ConnectionI.java:1145)
11:34:26 at Ice.ConnectionI.message(ConnectionI.java:1056)
11:34:26 at IceInternal.ThreadPool.run(ThreadPool.java:395)
11:34:26 at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
11:34:26 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:832)
11:34:26 at java.base/java.lang.Thread.run(Thread.java:829)
11:34:26 serverExceptionClass = ome.conditions.ResourceError
11:34:26 message = Error retrieving Pixels id:2901. Pixels set does not exist or the user id:0 has insufficient permissions to retrieve it.
11:34:26 }
11:34:26 FAILED test/integration/test_tickets2000.py::TestTickets2000::test1184 - AssertionError: Expected the test to complete in < 3 seconds, took: 10.921309
11:34:26 assert 10.921308517456055 < 3.0
11:34:26 ==== 33 failed, 3 passed, 2025 deselected, 12 warnings in 190.22s (0:03:10) ====
11:34:27 !! 10/03/24 12:34:26.984 error: 4 communicators not destroyed during global destruction.
11:34:27 Result: 1
11:34:27
11:34:27 BUILD SUCCESSFUL
11:34:27 Total time: 3 minutes 11 seconds
11:34:27 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroJava/build.xml -Dtestng.useDefaultListeners=true -Dtestreports.dir=target/reports/broken broken
11:34:27 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
11:34:27 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/build.xml
11:34:27 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
11:34:27
11:34:27 testng-init:
11:34:27 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:34:27 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
11:34:30 11:34:30,186 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
11:34:30 11:34:30,189 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - No custom configurators were discovered as a service.
11:34:30 11:34:30,189 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
11:34:30 11:34:30,192 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
11:34:30 11:34:30,193 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
11:34:30 11:34:30,193 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
11:34:30 11:34:30,194 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
11:34:30 11:34:30,194 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
11:34:30 11:34:30,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
11:34:30 11:34:30,196 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
11:34:30 11:34:30,196 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
11:34:30 11:34:30,197 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3434a4f0 - Resource [logback.xml] occurs multiple times on the classpath.
11:34:30 11:34:30,197 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3434a4f0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
11:34:30 11:34:30,197 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3434a4f0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
11:34:30 11:34:30,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
11:34:30 11:34:30,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
11:34:30 11:34:30,414 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
11:34:30 11:34:30,415 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@79afa369 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
11:34:30 11:34:30,415 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@79afa369 - Please move "immediateFlush" property into the enclosing appender.
11:34:30 11:34:30,474 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@79afa369 - Setting the "immediateFlush" property of the enclosing appender to true
11:34:30 11:34:30,474 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
11:34:30 11:34:30,474 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
11:34:30 11:34:30,474 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
11:34:30 11:34:30,474 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
11:34:30 11:34:30,475 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
11:34:30 11:34:30,475 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
11:34:30 11:34:30,476 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3b9ac754 - End of configuration.
11:34:30 11:34:30,478 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e002356 - Registering current configuration as safe fallback point
11:34:30 11:34:30,478 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22d8f4ed - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
11:34:30
11:34:30 lifecycle.test-compile:
11:34:30 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_52540455.tmp
11:34:30 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
11:34:30 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
11:34:30 :: delivering :: omero#OmeroJava-test;working@db6de8e9ca4d :: 5.6.3-513-c2479c27a8-ice36-ice36 :: integration :: Thu Oct 03 11:34:27 UTC 2024
11:34:30 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
11:34:30 :: publishing :: omero#OmeroJava-test
11:34:30 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-c2479c27a8-ice36-ice36.jar
11:34:30 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-513-c2479c27a8-ice36-ice36.xml
11:34:30
11:34:30 broken:
11:34:30 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
11:34:31 11:34:30,993 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
11:34:31 11:34:30,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - No custom configurators were discovered as a service.
11:34:31 11:34:30,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
11:34:31 11:34:30,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
11:34:31 11:34:30,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
11:34:31 11:34:30,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
11:34:31 11:34:30,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
11:34:31 11:34:30,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
11:34:31 11:34:30,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
11:34:31 11:34:31,000 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
11:34:31 11:34:31,001 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
11:34:31 11:34:31,001 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@74fe5c40 - Resource [logback.xml] occurs multiple times on the classpath.
11:34:31 11:34:31,001 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@74fe5c40 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
11:34:31 11:34:31,001 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@74fe5c40 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
11:34:31 11:34:31,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
11:34:31 11:34:31,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
11:34:31 11:34:31,181 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
11:34:31 11:34:31,182 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3febb011 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
11:34:31 11:34:31,182 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3febb011 - Please move "immediateFlush" property into the enclosing appender.
11:34:31 11:34:31,205 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3febb011 - Setting the "immediateFlush" property of the enclosing appender to true
11:34:31 11:34:31,206 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
11:34:31 11:34:31,206 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
11:34:31 11:34:31,206 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
11:34:31 11:34:31,206 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
11:34:31 11:34:31,206 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
11:34:31 11:34:31,206 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
11:34:31 11:34:31,206 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@10e31a9a - End of configuration.
11:34:31 11:34:31,207 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@131774fe - Registering current configuration as safe fallback point
11:34:31 11:34:31,207 |-INFO in ch.qos.logback.classic.util.ContextInitializer@436813f3 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 208 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
11:34:32 Oct 03, 2024 11:34:32 AM ome.system.OmeroContext prepareRefresh
11:34:32 INFO: Refreshing ome.system.OmeroContext@26d820eb: startup date [Thu Oct 03 11:34:32 UTC 2024]; root of context hierarchy
11:34:32 Oct 03, 2024 11:34:32 AM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
11:34:32 INFO: Loading XML bean definitions from class path resource [ome/config.xml]
11:36:04 ===============================================
11:36:04 OmeroJava.integration
11:36:04 Total tests run: 43, Passes: 2, Failures: 41, Skips: 0
11:36:04 ===============================================
11:36:05 The tests failed.
11:36:05
11:36:05 BUILD SUCCESSFUL
11:36:05 Total time: 1 minute 37 seconds
11:36:05 + deactivate
11:36:05 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
11:36:05 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:36:05 + export PATH
11:36:05 + unset _OLD_VIRTUAL_PATH
11:36:05 + '[' -n '' ']'
11:36:05 + '[' -n /bin/bash -o -n '' ']'
11:36:05 + hash -r
11:36:05 + '[' -n '' ']'
11:36:05 + unset VIRTUAL_ENV
11:36:05 + '[' '!' '' = nondestructive ']'
11:36:05 + unset -f deactivate
11:36:05 Recording test results
11:36:06 [Checks API] No suitable checks publisher found.
11:36:06 Build step 'Publish JUnit test result report' changed build result to UNSTABLE
11:36:06 TestNG Reports Processing: START
11:36:06 Looking for TestNG results report in workspace using pattern: **/OmeroJava/target/reports/integration/*.xml
11:36:06 Saving reports...
11:36:06 Processing '/var/jenkins_home/jobs/OMERO-test-integration/builds/185/testng/testng-results.xml'
11:36:06 TestNG Reports Processing: FINISH
11:36:06 Finished: UNSTABLE
![[Jenkins]](/jenkins/static/9ed1fe1f/images/svgs/logo.svg){kind=logo}
