Regression
OmeroPy.test.integration.gatewaytest.test_missing_pyramid.TestPyramid.testGetChannelsNoRe (from pytest)
Error Message
failed on setup with "AttributeError: 'numpy.ndarray' object has no attribute 'tostring'"
Stacktrace
request = <SubRequest 'author_testimg_generated' for <Function testGetChannelsNoRe>>
gatewaywrapper = <omero.gateway.pytest_fixtures.GatewayWrapper object at 0x7fdfbb4e2010>
@pytest.fixture(scope='function')
def author_testimg_generated(request, gatewaywrapper):
"""
logs in as Author and returns the test image, creating it first if needed.
"""
gatewaywrapper.loginAsAuthor()
> rv = gatewaywrapper.createTestImg_generated()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/pytest_fixtures.py:51:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/pytest_fixtures.py:27: in createTestImg_generated
testimg = self.createTestImage(dataset=ds)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/scripts/testdb_create.py:273: in createTestImage
image = self.gateway.createImageFromNumpySeq(
../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:3876: in createImageFromNumpySeq
raise exc
../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:3852: in createImageFromNumpySeq
uploadPlane(plane, theZ, theC, theT, dtype)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
plane = array([[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[ 1, 1, 1, 1, 1, 1, 1, 1, 1, ..., 14, 14, 14, 14, 14, 14],
[15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15]],
dtype=int16)
z = 0, c = 0, t = 0, convertToType = None
def uploadPlane(plane, z, c, t, convertToType):
# if we're given a numpy dtype, need to convert plane to that dtype
if convertToType is not None:
p = numpy.zeros(plane.shape, dtype=convertToType)
p += plane
plane = p
byteSwappedPlane = plane.byteswap()
> convertedPlane = byteSwappedPlane.tostring()
^^^^^^^^^^^^^^^^^^^^^^^^^
E AttributeError: 'numpy.ndarray' object has no attribute 'tostring'
../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:3833: AttributeError