Regression
OmeroWeb.test.integration.test_api_wells.TestWells.test_well (from pytest)
Error Message
failed on setup with "AttributeError: 'numpy.ndarray' object has no attribute 'tostring'"
Stacktrace
self = <test_api_wells.TestWells object at 0x7ff4d1d7a350>
user1 = (<omero.clients.BaseClient object at 0x7ff4cd8e9850>, object #0 (::omero::model::Experimenter)
{
_id = object #1 (...nnotationLinksSeq =
{
}
_annotationLinksLoaded = False
_annotationLinksCountPerOwner =
{
}
})
@pytest.fixture()
def small_plate(self, user1):
"""
Create a small plate with 1 row and 2 columns.
Two wells are created, but only the first has any Images (3).
"""
> return self.create_plate_wells(user1, 1, 2, 0)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
test/integration/test_api_wells.py:168:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
test/integration/test_api_wells.py:145: in create_plate_wells
image = self.create_test_image(
../../../../.venv3/lib64/python3.11/site-packages/omero/testlib/__init__.py:445: in create_test_image
script_utils.upload_plane(raw_pixel_store, plane_2d,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
raw_pixels_store = 5d2b1153-ce2e-4d02-8cae-ceab894c3c96/0f99e760-dcd3-4508-a37b-5c6a6b45089fomero.api.RawPixelsStore -t -e 1.1:tcp -h 172.18.0.11 -p 36999 -t 60000
plane = array([[0, 1, 2, 3, 4],
[0, 1, 2, 3, 4],
[0, 1, 2, 3, 4],
[0, 1, 2, 3, 4],
[0, 1, 2, 3, 4]], dtype=int16)
z = 0, c = 0, t = 0
def upload_plane(raw_pixels_store, plane, z, c, t):
"""
Upload the plane to the server attaching it to the current z,c,t
of the already instantiated rawPixelStore.
:param raw_pixels_store store pointing to the data.
:param plane The data to upload
:param z The Z-Section of the plane.
:param c The C-Section of the plane.
:param t The T-Section of the plane.
"""
byte_swapped_plane = plane.byteswap()
> converted_plane = byte_swapped_plane.tostring()
^^^^^^^^^^^^^^^^^^^^^^^^^^^
E AttributeError: 'numpy.ndarray' object has no attribute 'tostring'
../../../../.venv3/lib64/python3.11/site-packages/omero/util/script_utils.py:1088: AttributeError