Changes

merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Already up to date.

Merged PRs:
  - PR 616 dependabot[bot] 'Bump ZarrReader from `31e9353` to `9a9e662`'

Repository: ome/ZarrReader
Excluded PRs:
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
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Repository: ome/bio-formats-documentation
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Merged PRs:
  - PR 379 dgault 'Update broken link for Maia Scientific and adding Openslide and Tronche to the ignore list'

Repository: ome/bio-formats-examples
Already up to date.

Merged PRs:
  - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'
  - PR 127 jburel 'Matlab Examples'
  - PR 128 sbesson 'Relicense Bio-Formats examples under BSD 2-clause'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4200 tstoeter 'Allow processing multiple files sequentially in a single run, with file names read from stdin.' (user: tstoeter)
  - PR 4195 WalkerKnapp 'Andor SIF: Support files larger than 4 GB and with non-fixed-size footers' (user: WalkerKnapp)
  - PR 4190 melissalinkert 'Extend precompressed support to read DICOM and write TIFF/OME-TIFF' (stage: draft)
  - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft)
  - PR 4164 melissalinkert 'Reduce DICOM write time' (stage: draft)
  - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
  - PR 3537 dgault 'Flex: Merge IDR changes and add new group plate option' (label: exclude)
Already up to date.

Merged PRs:
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4180 melissalinkert 'Columbus: update to use micrometers instead of `reference frame` for positions'
  - PR 4181 melissalinkert 'Add support for reading compressed NDPI tiles'
  - PR 4193 dgault 'Imaris: Remove empty color entries for non 0 indexed colors'
  - PR 4196 melissalinkert 'DICOM: use FrameTimePointer to detect timelapse data'
  - PR 4198 cqian89 'SDT: fix NegativeArraySizeException when reading files recorded by SPCM64 9.90'

Repository: ome/ome-codecs
Already up to date.

Merged PRs:
  - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]'

Repository: ome/ome-common-java
Excluded PRs:
  - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru)
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Repository: ome/ome-jai
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Repository: ome/ome-mdbtools
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Repository: ome/ome-metakit
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Repository: ome/ome-model
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Conflicting PRs (not included):
  - PR 174 jburel 'Remove docs'

Repository: ome/ome-poi
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Repository: ome/ome-stubs
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Generated by BIOFORMATS-push#112 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/112/)

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