Skip to content

Changes

Summary

  1. merge master -Dorg -Ssuccess-only (details)
  2. Update component versions (details)
Commit aa6ca8cb2870a6ac99075837c8e396703e99b463 by snoopycrimecop
merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Excluded PRs:
  - PR 632 dependabot[bot] 'Bump ZarrReader from `9a9e662` to `b17c3ab`' (status: failure)
Already up to date.

Merged PRs:
  - PR 644 dependabot[bot] 'Bump bioformats from `686371d` to `800950a`'

Repository: ome/ZarrReader
Excluded PRs:
  - PR 95 dgault 'Class cast exception when parsing metadata' (status: failure)
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
Updating 9a9e662..b17c3ab
Previously merged:
  - PR 93 dgault 'Bump version to 0.5.3-SNAPSHOT'
  - PR 92 dgault 'Bump version to 0.5.2'
  - PR 91 dgault 'Bump Bio-Formats version to 7.3.1'

Repository: ome/bio-formats-documentation
Updating e9f8a224..57a02deb
Previously merged:
  - PR 393 jburel 'Use https instead of http'

Merged PRs:
  - PR 390 melissalinkert 'Update precompressed tile documentation'
  - PR 394 pwalczysko 'Add sas.upenn.edu to ignore list linkchecker'

Repository: ome/bio-formats-examples
Already up to date.

Merged PRs:
  - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4243 melissalinkert 'Update IExtraMetadataWriter.setExtraMetadata(...) to accept an Object' (stage: draft)
  - PR 4217 marcobitplane 'Imaris IMS Reader: support for LZ4 compression and performance improvements' (user: marcobitplane)
  - PR 4196 melissalinkert 'DICOM: use FrameTimePointer to detect timelapse data' (label: exclude)
  - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft)
  - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
Already up to date.

Merged PRs:
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4195 WalkerKnapp 'Andor SIF: Support files larger than 4 GB and with non-fixed-size footers'
  - PR 4219 melissalinkert 'ImageJ exporter: save original metadata'
  - PR 4242 melissalinkert 'Some improvements to OME-TIFF write performance'

Repository: ome/ome-codecs
Already up to date.

Merged PRs:
  - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]'
  - PR 41 rharkes 'Add LZ4 compression/decompression'

Repository: ome/ome-common-java
Already up to date.

Merged PRs:
  - PR 91 sbesson 'Activate Javadoc in CI builds'

Repository: ome/ome-jai
Already up to date.

Repository: ome/ome-mdbtools
Already up to date.

Repository: ome/ome-metakit
Already up to date.

Repository: ome/ome-model
Already up to date.

Conflicting PRs (not included):
  - PR 174 jburel 'Remove docs'

Repository: ome/ome-poi
Already up to date.

Repository: ome/ome-stubs
Already up to date.

Generated by BIOFORMATS-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/214/)
The file was modified bio-formats-examples (diff)
The file was modified ome-metakit (diff)
The file was modified ome-model (diff)
The file was modified ome-codecs (diff)
The file was modified ome-mdbtools (diff)
The file was modified ome-stubs (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-poi (diff)
The file was modified ome-common-java (diff)
The file was modified ome-jai (diff)
The file was modified .gitmodules (diff)
The file was modified ZarrReader (diff)
The file was modified bioformats (diff)
Commit 308961a4460a1827cd62d72fcf24dc2def230fa3 by snoopycrimecop
Update component versions
The file was modified bio-formats-examples (diff)
The file was modified ome-model (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-poi (diff)
The file was modified bioformats (diff)
The file was modified ome-codecs (diff)
The file was modified ome-metakit (diff)