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Parsing MIASReader
Parsing MicroCTReader
Parsing MikroscanTiffReader
Parsing MINCReader
Parsing MolecularImagingReader
Parsing MRCReader
Parsing MRWReader
Parsing NAFReader
Parsing ND2Reader
Parsing NDPIReader
Parsing NDPISReader
Parsing NiftiReader
Parsing NikonElementsTiffReader
Parsing NikonReader
Parsing NikonTiffReader
Parsing OIRReader
Parsing OlympusTileReader
Parsing OpenlabRawReader
Parsing OpenlabReader
Parsing OperettaReader
Parsing OxfordInstrumentsReader
Parsing PCIReader
Parsing PCORAWReader
Parsing PDSReader
Parsing PerkinElmerReader
Parsing PhotoshopTiffReader
Parsing PovrayReader
Parsing PQBinReader
Parsing PrairieReader
Parsing PSDReader
Parsing PyramidTiffReader
Parsing QuesantReader
Parsing RCPNLReader
Parsing RHKReader
Parsing SBIGReader
Parsing ScanrReader
Parsing SDTReader
Parsing SeikoReader
Parsing SEQReader
Parsing SIFReader
Parsing SimplePCITiffReader
Parsing SISReader
Parsing SlidebookReader
Parsing SlidebookTiffReader
Parsing SMCameraReader
Parsing SPCReader
Parsing SPEReader
Parsing SpiderReader
Parsing SVSReader
Parsing TargaReader
Parsing TCSReader
Parsing TecanReader
Parsing TillVisionReader
Parsing TopometrixReader
Parsing TrestleReader
Parsing UBMReader
Parsing UnisokuReader
Parsing VarianFDFReader
Parsing VectraReader
Parsing VeecoReader
Parsing VentanaReader
Parsing VGSAMReader
Parsing VisitechReader
Parsing VolocityClippingReader
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Parsing WATOPReader
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Parsing CellH5Reader
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Parsing FakeReader
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Parsing GIFReader
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Parsing JPEG2000Reader
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Parsing KLBReader
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Parsing NRRDReader
Parsing OBFReader
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Parsing PCXReader
Parsing PGMReader
Parsing PictReader
Parsing QTReader
Parsing SlideBook7Reader
Parsing TextReader
Parsing TiffDelegateReader
Parsing TiffJAIReader
Parsing TiffReader
Parsing TileJPEGReader
Parsing ZipReader
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[INFO] 
[INFO] --- exec-maven-plugin:1.6.0:java (gen-metadata-summary) @ bio-formats-documentation ---
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[INFO] 
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generating indices... genindex done
writing additional pages... search done
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dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded.

The HTML pages are in target/sphinx/html.
[INFO] 
[INFO] --- maven-assembly-plugin:3.1.0:single (make-zip) @ bio-formats-documentation ---
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[INFO] 
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[INFO] 
[INFO] -------------------------< ome:OMEZarrReader >--------------------------
[INFO] Building Implementation of Bio-Formats readers for the next-generation file formats 0.5.3-SNAPSHOT [24/25]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- buildnumber-maven-plugin:1.4:create (default) @ OMEZarrReader ---
[INFO] Executing: /bin/sh -c cd '/home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader' && 'git' 'rev-parse' '--verify' 'HEAD'
[INFO] Working directory: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader
[INFO] Storing buildNumber: fb5e0c0d2258827699af3c2e2194846b6474f2f3 at timestamp: 1727741236087
[WARNING] Cannot get the branch information from the git repository: 
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref

[INFO] Executing: /bin/sh -c cd '/home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader' && 'git' 'rev-parse' '--verify' 'HEAD'
[INFO] Working directory: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] 
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ OMEZarrReader ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/src/main/resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ OMEZarrReader ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 4 source files to /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/target/classes
[WARNING] /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/src/loci/formats/in/ZarrReader.java: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/src/loci/formats/in/ZarrReader.java uses unchecked or unsafe operations.
[WARNING] /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/src/loci/formats/in/ZarrReader.java: Recompile with -Xlint:unchecked for details.
[INFO] 
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ OMEZarrReader ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/src/test/resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ OMEZarrReader ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 3 source files to /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/target/test-classes
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ OMEZarrReader ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.0.0:jar (default-jar) @ OMEZarrReader ---
[INFO] Building jar: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/target/OMEZarrReader-0.5.3-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-assembly-plugin:2.2-beta-5:single (make-assembly) @ OMEZarrReader ---
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[INFO] Building jar: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/target/OMEZarrReader-0.5.3-SNAPSHOT-jar-with-dependencies.jar
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[WARNING] Assembly file: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/target/OMEZarrReader-0.5.3-SNAPSHOT-jar-with-dependencies.jar is not a regular file (it may be a directory). It cannot be attached to the project build for installation or deployment.
[INFO] 
[INFO] --- maven-install-plugin:2.4:install (default-install) @ OMEZarrReader ---
[INFO] Installing /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/target/OMEZarrReader-0.5.3-SNAPSHOT.jar to /home/omero/.m2/repository/ome/OMEZarrReader/0.5.3-SNAPSHOT/OMEZarrReader-0.5.3-SNAPSHOT.jar
[INFO] Installing /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/pom.xml to /home/omero/.m2/repository/ome/OMEZarrReader/0.5.3-SNAPSHOT/OMEZarrReader-0.5.3-SNAPSHOT.pom
[INFO] 
[INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ OMEZarrReader ---
[INFO] Using alternate deployment repository ome.staging::default::http://admin:admin123@nexus:8081/nexus/repository/maven-internal/
Downloading from ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/0.5.3-SNAPSHOT/maven-metadata.xml
Progress (1): 769 B
                   
Downloaded from ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/0.5.3-SNAPSHOT/maven-metadata.xml (769 B at 154 kB/s)
Uploading to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/0.5.3-SNAPSHOT/OMEZarrReader-0.5.3-20241001.000722-71.jar
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Progress (1): 36 kB   
                   
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Uploading to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/0.5.3-SNAPSHOT/OMEZarrReader-0.5.3-20241001.000722-71.pom
Progress (1): 4.1/7.5 kB
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Downloading from ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/maven-metadata.xml
Progress (1): 356 B
                   
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Uploading to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/0.5.3-SNAPSHOT/maven-metadata.xml
Progress (1): 769 B
                   
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Uploading to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/maven-metadata.xml
Progress (1): 356 B
                   
Uploaded to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/maven-metadata.xml (356 B at 3.1 kB/s)
[INFO] 
[INFO] -----------------------< ome:bio-formats-build >------------------------
[INFO] Building Bio-Formats top-level build 6.0.0-SNAPSHOT              [25/25]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-install-plugin:2.5.2:install (default-install) @ bio-formats-build ---
[INFO] Installing /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/pom.xml to /home/omero/.m2/repository/ome/bio-formats-build/6.0.0-SNAPSHOT/bio-formats-build-6.0.0-SNAPSHOT.pom
[INFO] 
[INFO] --- maven-deploy-plugin:2.8.2:deploy (default-deploy) @ bio-formats-build ---
[INFO] Using alternate deployment repository ome.staging::default::http://admin:admin123@nexus:8081/nexus/repository/maven-internal/
Downloading from ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/6.0.0-SNAPSHOT/maven-metadata.xml
Progress (1): 601 B
                   
Downloaded from ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/6.0.0-SNAPSHOT/maven-metadata.xml (601 B at 200 kB/s)
Uploading to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/6.0.0-SNAPSHOT/bio-formats-build-6.0.0-20241001.000722-206.pom
Progress (1): 3.2 kB
                    
Uploaded to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/6.0.0-SNAPSHOT/bio-formats-build-6.0.0-20241001.000722-206.pom (3.2 kB at 51 kB/s)
Downloading from ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/maven-metadata.xml
Progress (1): 280 B
                   
Downloaded from ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/maven-metadata.xml (280 B at 40 kB/s)
Uploading to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/6.0.0-SNAPSHOT/maven-metadata.xml
Progress (1): 601 B
                   
Uploaded to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/6.0.0-SNAPSHOT/maven-metadata.xml (601 B at 5.0 kB/s)
Uploading to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/maven-metadata.xml
Progress (1): 280 B
                   
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] OME Common Java 6.0.24-SNAPSHOT .................... SUCCESS [  8.247 s]
[INFO] OME Model 6.3.7-SNAPSHOT ........................... SUCCESS [  0.193 s]
[INFO] Metadata model specification 6.3.7-SNAPSHOT ........ SUCCESS [  3.479 s]
[INFO] OME XML library 6.3.7-SNAPSHOT ..................... SUCCESS [ 18.436 s]
[INFO] OME Model documentation 6.3.7-SNAPSHOT ............. SUCCESS [  4.529 s]
[INFO] OME POI 5.3.10-SNAPSHOT ............................ SUCCESS [  9.484 s]
[INFO] MDB Tools (Java port) 5.3.4-SNAPSHOT ............... SUCCESS [  3.643 s]
[INFO] OME JAI 0.1.5-SNAPSHOT ............................. SUCCESS [  8.590 s]
[INFO] OME Codecs 1.0.4-SNAPSHOT .......................... SUCCESS [  4.018 s]
[INFO] OME Stubs 6.0.3-SNAPSHOT ........................... SUCCESS [  0.479 s]
[INFO] MIPAV stubs 6.0.3-SNAPSHOT ......................... SUCCESS [  2.537 s]
[INFO] Metakit 5.3.8-SNAPSHOT ............................. SUCCESS [  2.825 s]
[INFO] Bio-Formats projects 8.0.0-SNAPSHOT ................ SUCCESS [  0.400 s]
[INFO] libjpeg-turbo Java bindings 8.0.0-SNAPSHOT ......... SUCCESS [  0.847 s]
[INFO] Bio-Formats API 8.0.0-SNAPSHOT ..................... SUCCESS [  1.351 s]
[INFO] BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT . SUCCESS [  2.996 s]
[INFO] Bio-Formats library 8.0.0-SNAPSHOT ................. SUCCESS [  3.360 s]
[INFO] Bio-Formats Plugins for ImageJ 8.0.0-SNAPSHOT ...... SUCCESS [  1.339 s]
[INFO] Bio-Formats command line tools 8.0.0-SNAPSHOT ...... SUCCESS [  1.533 s]
[INFO] bioformats_package bundle 8.0.0-SNAPSHOT ........... SUCCESS [ 12.556 s]
[INFO] Bio-Formats testing framework 8.0.0-SNAPSHOT ....... SUCCESS [  0.874 s]
[INFO] Bio-Formats examples 8.0.0-SNAPSHOT ................ SUCCESS [  0.740 s]
[INFO] Bio-Formats documentation 8.0.0-SNAPSHOT ........... SUCCESS [ 28.534 s]
[INFO] Implementation of Bio-Formats readers for the next-generation file formats 0.5.3-SNAPSHOT SUCCESS [  6.695 s]
[INFO] Bio-Formats top-level build 6.0.0-SNAPSHOT ......... SUCCESS [  0.282 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  02:08 min
[INFO] Finished at: 2024-10-01T00:07:22Z
[INFO] ------------------------------------------------------------------------
Archiving artifacts
Finished: SUCCESS