Skip to content

Changes

Summary

  1. Bump bio-formats-examples from `74d4def` to `9955ace` (details)
  2. Bump bio-formats-documentation from `afd4c11` to `670251d` (details)
  3. Bump bioformats from `682bc7e` to `7dd002d` (details)
  4. merge master -Dorg -Ssuccess-only (details)
  5. Update component versions (details)
Commit fc217b23fb0378d1b89e8ff1af8705fda25d3047 by noreply
Bump bio-formats-examples from `74d4def` to `9955ace`

Bumps [bio-formats-examples](https://github.com/ome/bio-formats-examples) from `74d4def` to `9955ace`.
- [Commits](https://github.com/ome/bio-formats-examples/compare/74d4def839ce01455059f62b6b65233bf2b79f09...9955ace884a4a58b6b6ba84a04738bda84a00f33)

---
updated-dependencies:
- dependency-name: bio-formats-examples
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
The file was modified bio-formats-examples (diff)
Commit 45f9c827968c97c26025cbb0a243f5654e7a4620 by noreply
Bump bio-formats-documentation from `afd4c11` to `670251d`

Bumps [bio-formats-documentation](https://github.com/ome/bio-formats-documentation) from `afd4c11` to `670251d`.
- [Commits](https://github.com/ome/bio-formats-documentation/compare/afd4c1116bb2b3cc18f5e39645a511a50a142a9a...670251d38864ad36d9b5582190725b69abc4b137)

---
updated-dependencies:
- dependency-name: bio-formats-documentation
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
The file was modified bio-formats-documentation (diff)
Commit 4964b87fd9e25b522d362f9fa0e7f37ccd051826 by noreply
Bump bioformats from `682bc7e` to `7dd002d`

Bumps [bioformats](https://github.com/openmicroscopy/bioformats) from `682bc7e` to `7dd002d`.
- [Release notes](https://github.com/openmicroscopy/bioformats/releases)
- [Commits](https://github.com/openmicroscopy/bioformats/compare/682bc7e318b88f159d3c6e2603fb82fb9d613268...7dd002d53cef8e2a30b19da572e920f82f8ce903)

---
updated-dependencies:
- dependency-name: bioformats
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
The file was modified bioformats (diff)
Commit f35c6244bfce65b15227e8d13e13f93514946cd9 by snoopycrimecop
merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Already up to date.

Merged PRs:
  - PR 604 dependabot[bot] 'Bump bio-formats-examples from `74d4def` to `9955ace`'
  - PR 605 dependabot[bot] 'Bump bio-formats-documentation from `afd4c11` to `670251d`'
  - PR 606 dependabot[bot] 'Bump bioformats from `682bc7e` to `7dd002d`'

Repository: ome/ZarrReader
Excluded PRs:
  - PR 74 dgault 'JZarr: Add jackson.core and jackson-databind to exclsions' (exclude comment)
  - PR 73 dgault 'Update ReadMe and Change Log' (status: failure)
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
Already up to date.

Merged PRs:
  - PR 75 dgault 'Update handling and parsing of acquisition metadata'
  - PR 82 dgault 'Reintroduce S3FileSystemStore'

Repository: ome/bio-formats-documentation
Already up to date.

Repository: ome/bio-formats-examples
Already up to date.

Merged PRs:
  - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'
  - PR 127 jburel 'Matlab Examples'
  - PR 128 sbesson 'Relicense Bio-Formats examples under BSD 2-clause'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4182 melissalinkert 'Fix Java 9+ warnings in formats-gpl component' (label: exclude)
  - PR 4181 melissalinkert 'Add support for reading compressed NDPI tiles' (label: exclude)
  - PR 4180 melissalinkert 'Columbus: update to use micrometers instead of `reference frame` for positions' (label: exclude)
  - PR 4179 melissalinkert 'Fix Java 9+ deprecation warnings in smaller components' (label: exclude)
  - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft)
  - PR 4164 melissalinkert 'Reduce DICOM write time' (stage: draft)
  - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3898 melissalinkert 'InCell 1000/2000 field count and plane metadata fixes' (stage: draft)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3680 iwbh15 'Performance increase in writeIFD' (user: iwbh15)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
  - PR 3537 dgault 'Flex: Merge IDR changes and add new group plate option' (label: exclude)
Already up to date.

Merged PRs:
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4177 melissalinkert 'Fix some Java 9+ warnings in formats-bsd'
  - PR 4178 melissalinkert 'Fix most Java 9+ deprecation warnings in bio-formats-plugins component'
  - PR 4188 melissalinkert 'Fix a few string comparisons, fixes #4184'

Repository: ome/ome-codecs
Already up to date.

Merged PRs:
  - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]'

Repository: ome/ome-common-java
Excluded PRs:
  - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru)
Already up to date.

Repository: ome/ome-jai
Already up to date.

Repository: ome/ome-mdbtools
Already up to date.

Repository: ome/ome-metakit
Already up to date.

Repository: ome/ome-model
Excluded PRs:
  - PR 180 joshmoore 'xsd-fu: templates for linkml generation' (stage: draft)
Already up to date.

Conflicting PRs (not included):
  - PR 174 jburel 'Remove docs'

Repository: ome/ome-poi
Already up to date.

Repository: ome/ome-stubs
Already up to date.

Generated by BIOFORMATS-push#42 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/42/)
The file was modified .gitmodules (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-stubs (diff)
The file was modified ome-codecs (diff)
The file was modified ome-metakit (diff)
The file was modified ome-poi (diff)
The file was modified bio-formats-examples (diff)
The file was modified ome-jai (diff)
The file was modified ome-mdbtools (diff)
The file was modified ZarrReader (diff)
The file was modified ome-common-java (diff)
The file was modified ome-model (diff)
The file was modified bioformats (diff)
Commit e709fcfd1d981b0e41e5693ed204fedbbdb8620c by snoopycrimecop
Update component versions
The file was modified bio-formats-examples (diff)
The file was modified ome-metakit (diff)
The file was modified ome-poi (diff)
The file was modified ome-codecs (diff)
The file was modified bioformats (diff)
The file was modified ome-model (diff)
The file was modified bio-formats-documentation (diff)