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#15 423.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.1.1/maven-model-builder-3.1.1.jar
#15 423.2 Progress (4): 1.4/3.2 MB | 42 kB | 25 kB | 4.1/45 kB
Progress (4): 1.5/3.2 MB | 42 kB | 25 kB | 4.1/45 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings-builder/3.1.1/maven-settings-builder-3.1.1.jar (42 kB at 327 kB/s)
#15 423.2 Progress (3): 1.6/3.2 MB | 25 kB | 45 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.1.1/maven-aether-provider-3.1.1.jar
#15 423.2 Progress (3): 1.6/3.2 MB | 25 kB | 45 kB
Progress (3): 1.6/3.2 MB | 25 kB | 45 kB
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Progress (3): 1.8/3.2 MB | 25 kB | 45 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/3.1.1/maven-repository-metadata-3.1.1.jar (25 kB at 185 kB/s)
#15 423.2 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar
#15 423.2 Progress (2): 1.8/3.2 MB | 45 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.1.1/maven-plugin-api-3.1.1.jar (45 kB at 307 kB/s)
#15 423.2 Progress (2): 1.9/3.2 MB | 61/160 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar
#15 423.2 Progress (2): 1.9/3.2 MB | 65/160 kB
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Progress (3): 2.1/3.2 MB | 160 kB | 4.1/60 kB
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Progress (5): 2.5/3.2 MB | 160 kB | 60 kB | 18 kB | 65/145 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.1.1/maven-model-builder-3.1.1.jar (160 kB at 887 kB/s)
#15 423.2 Progress (4): 2.5/3.2 MB | 60 kB | 18 kB | 69/145 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar
#15 423.2 Progress (4): 2.5/3.2 MB | 60 kB | 18 kB | 69/145 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.1.1/maven-aether-provider-3.1.1.jar (60 kB at 322 kB/s)
#15 423.2 Progress (3): 2.6/3.2 MB | 18 kB | 145 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar
#15 423.2 Progress (3): 2.6/3.2 MB | 18 kB | 145 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar (18 kB at 92 kB/s)
#15 423.2 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/10.0.1/guava-10.0.1.jar
#15 423.2 Progress (2): 2.7/3.2 MB | 145 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar (145 kB at 680 kB/s)
#15 423.3 Downloading from central: https://repo.maven.apache.org/maven2/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar
#15 423.3 Progress (2): 3.0/3.2 MB | 89/134 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar (134 kB at 554 kB/s)
#15 423.3 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar
#15 423.3 Progress (4): 3.2 MB | 197 kB | 0.3/1.5 MB | 12/33 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar (197 kB at 780 kB/s)
#15 423.3 Progress (3): 3.2 MB | 0.5/1.5 MB | 33 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar
#15 423.3 Progress (3): 3.2 MB | 0.5/1.5 MB | 33 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/7.0.0/biz.aQute.bndlib-7.0.0.jar (3.2 MB at 13 MB/s)
#15 423.3 Progress (2): 0.6/1.5 MB | 33 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.26/plexus-interpolation-1.26.jar
#15 423.3 Progress (2): 0.6/1.5 MB | 33 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar (33 kB at 122 kB/s)
#15 423.3 Progress (2): 0.8/1.5 MB | 16/291 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar (50 kB at 161 kB/s)
#15 423.3 Progress (3): 1.4/1.5 MB | 291 kB | 85 kB
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#15 426.9 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-restlet1x-model/2.9.1-02/nexus-restlet1x-model-2.9.1-02.jar (160 kB at 2.5 MB/s)
#15 426.9 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.7/nexus-staging-maven-plugin-1.6.7.jar (250 kB at 3.6 MB/s)
#15 426.9 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.9.1-02/nexus-client-core-2.9.1-02.jar (211 kB at 3.0 MB/s)
#15 427.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.pom
#15 427.0 Progress (1): 4.1 kB
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#15 427.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.jar
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#15 427.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.7.0/nexus-staging-maven-plugin-1.7.0.pom
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#15 427.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-staging/1.7.0/nexus-staging-1.7.0.pom
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#15 427.8 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-common/1.7.0/nexus-common-1.7.0.jar
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#15 427.8 [output clipped, log limit 2MiB reached]
#15 475.4 WARNING: A restricted method in java.lang.System has been called
#15 475.4 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 475.4 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 475.4 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 475.4
#15 523.3 SLF4J: No SLF4J providers were found.
#15 523.3 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 523.3 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 523.6 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 523.6 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 523.6 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 523.6 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 532.6s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.0s
#17 [13/14] RUN ant jars tools
#17 1.606 Buildfile: /bio-formats-build/bioformats/build.xml
#17 2.063 [echo] isSnapshot = true
#17 4.172
#17 4.172 copy-jars:
#17 4.172
#17 4.172 deps-formats-api:
#17 4.255 [echo] isSnapshot = true
#17 4.311
#17 4.311 install-pom:
#17 4.492 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/pom-bio-formats-8.6.0-SNAPSHOT.pom
#17 4.562 [resolver:install] Installing ome:pom-bio-formats:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 4.566 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 4.568
#17 4.568 jar-formats-api:
#17 4.678 [echo] isSnapshot = true
#17 4.838
#17 4.838 init-title:
#17 4.838 [echo] ----------=========== formats-api ===========----------
#17 4.838
#17 4.838 init-timestamp:
#17 4.847
#17 4.847 init:
#17 4.847
#17 4.847 copy-resources:
#17 4.848 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 4.863 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 4.865
#17 4.865 compile:
#17 5.044 [resolver:resolve] Resolving artifacts
#17 5.070 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 5.323 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 5.323 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 5.323 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 5.323 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 5.323 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 5.323 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 6.024 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 6.024 [javac] import loci.common.ReflectedUniverse;
#17 6.024 [javac] ^
#17 6.324 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 6.324 [javac] int currentIndex = r.getCoreIndex();
#17 6.324 [javac] ^
#17 6.325 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 6.325 [javac] r.setCoreIndex(coreIndex);
#17 6.325 [javac] ^
#17 6.325 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 6.325 [javac] r.setCoreIndex(currentIndex);
#17 6.325 [javac] ^
#17 6.425 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 6.425 [javac] public void setCoreIndex(int no) {
#17 6.425 [javac] ^
#17 6.425 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 6.425 [javac] public int getCoreIndex() {
#17 6.425 [javac] ^
#17 6.425 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 6.425 [javac] public int coreIndexToSeries(int index)
#17 6.425 [javac] ^
#17 6.426 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 6.426 [javac] public int seriesToCoreIndex(int series)
#17 6.426 [javac] ^
#17 6.426 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 6.426 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 6.426 [javac] ^
#17 6.526 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 6.526 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 6.526 [javac] ^
#17 6.526 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 6.526 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 6.526 [javac] ^
#17 6.526 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 6.526 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 6.526 [javac] ^
#17 6.527 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 6.527 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 6.527 [javac] ^
#17 6.627 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 6.627 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 6.627 [javac] ^
#17 6.627 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 6.627 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 6.627 [javac] ^
#17 6.627 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 6.627 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 6.627 [javac] ^
#17 6.728 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 6.728 [javac] public void setCoreIndex(int no) {
#17 6.728 [javac] ^
#17 6.728 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 6.728 [javac] public int getCoreIndex() {
#17 6.728 [javac] ^
#17 6.728 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 6.728 [javac] public int coreIndexToSeries(int index) {
#17 6.728 [javac] ^
#17 6.728 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 6.728 [javac] public int seriesToCoreIndex(int series) {
#17 6.729 [javac] ^
#17 6.729 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 6.729 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 6.729 [javac] ^
#17 6.729 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 6.729 [javac] return getReader().getCoreMetadataList();
#17 6.729 [javac] ^
#17 6.729 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 6.729 [javac] return getReader().getCoreIndex();
#17 6.729 [javac] ^
#17 6.729 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 6.729 [javac] getReader().setCoreIndex(no);
#17 6.729 [javac] ^
#17 6.729 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 6.729 [javac] return getReader().seriesToCoreIndex(series);
#17 6.729 [javac] ^
#17 6.729 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 6.729 [javac] return getReader().coreIndexToSeries(index);
#17 6.729 [javac] ^
#17 6.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 6.830 [javac] public void setCoreIndex(int no) {
#17 6.830 [javac] ^
#17 6.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 6.830 [javac] public int getCoreIndex() {
#17 6.830 [javac] ^
#17 6.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 6.830 [javac] public int coreIndexToSeries(int index) {
#17 6.830 [javac] ^
#17 6.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 6.830 [javac] public int seriesToCoreIndex(int series) {
#17 6.830 [javac] ^
#17 6.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 6.830 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 6.830 [javac] ^
#17 6.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 6.830 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 6.830 [javac] ^
#17 6.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 6.830 [javac] return reader.getCoreIndex();
#17 6.830 [javac] ^
#17 6.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 6.830 [javac] reader.setCoreIndex(no);
#17 6.830 [javac] ^
#17 6.831 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 6.831 [javac] return reader.seriesToCoreIndex(series);
#17 6.831 [javac] ^
#17 6.831 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 6.831 [javac] return reader.coreIndexToSeries(index);
#17 6.831 [javac] ^
#17 6.990 [javac] Note: Some input files use unchecked or unsafe operations.
#17 6.990 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 6.990 [javac] 40 warnings
#17 6.990
#17 6.990 formats-api.jar:
#17 6.991 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 7.016 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 7.053 [resolver:install] Using default POM (ome:formats-api:8.6.0-SNAPSHOT)
#17 7.056 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.pom
#17 7.104 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar
#17 7.106 [resolver:install] Installing ome:formats-api:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 7.108 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 7.108
#17 7.108 deps-turbojpeg:
#17 7.108
#17 7.108 jar-turbojpeg:
#17 7.209 [echo] isSnapshot = true
#17 7.347
#17 7.347 init-title:
#17 7.348 [echo] ----------=========== turbojpeg ===========----------
#17 7.348
#17 7.348 init-timestamp:
#17 7.348
#17 7.348 init:
#17 7.348
#17 7.348 copy-resources:
#17 7.349 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 7.349
#17 7.349 compile:
#17 7.359 [resolver:resolve] Resolving artifacts
#17 7.362 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 7.564 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 7.565 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 7.565 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 7.565 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 7.565 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 7.565 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 8.339 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 8.339 [javac] protected void finalize() throws Throwable {
#17 8.339 [javac] ^
#17 8.340 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 8.340 [javac] super.finalize();
#17 8.340 [javac] ^
#17 8.340 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 8.340 [javac] protected void finalize() throws Throwable {
#17 8.340 [javac] ^
#17 8.340 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 8.340 [javac] super.finalize();
#17 8.340 [javac] ^
#17 8.340 [javac] 8 warnings
#17 8.340
#17 8.340 jar:
#17 8.344 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 8.530 [resolver:install] Using default POM (ome:turbojpeg:8.6.0-SNAPSHOT)
#17 8.537 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.pom
#17 8.585 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar
#17 8.587 [resolver:install] Installing ome:turbojpeg:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 8.591 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 8.592
#17 8.592 deps-formats-bsd:
#17 8.592
#17 8.592 jar-formats-bsd:
#17 8.716 [echo] isSnapshot = true
#17 8.865
#17 8.865 init-title:
#17 8.865 [echo] ----------=========== formats-bsd ===========----------
#17 8.865
#17 8.865 init-timestamp:
#17 8.866
#17 8.866 init:
#17 8.866
#17 8.866 copy-resources:
#17 8.866 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 8.869 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 8.870
#17 8.870 compile:
#17 9.094 [resolver:resolve] Resolving artifacts
#17 9.118 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 9.326 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 9.326 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 9.326 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 9.326 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 9.326 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 9.426 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 10.63 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 10.63 [javac] import loci.common.ReflectedUniverse;
#17 10.63 [javac] ^
#17 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.03 [javac] core.size() != reader.getCoreMetadataList().size())
#17 11.03 [javac] ^
#17 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.03 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 11.03 [javac] ^
#17 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.03 [javac] int n = reader.getCoreMetadataList().size();
#17 11.03 [javac] ^
#17 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 11.03 [javac] reader.setCoreIndex(coreIndex);
#17 11.03 [javac] ^
#17 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.03 [javac] int n = reader.getCoreMetadataList().size();
#17 11.03 [javac] ^
#17 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.03 [javac] int n = reader.getCoreMetadataList().size();
#17 11.03 [javac] ^
#17 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 11.03 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 11.03 [javac] ^
#17 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.03 [javac] int n = reader.getCoreMetadataList().size();
#17 11.03 [javac] ^
#17 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 11.03 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 11.03 [javac] ^
#17 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.03 [javac] int n = reader.getCoreMetadataList().size();
#17 11.03 [javac] ^
#17 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 11.03 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 11.03 [javac] ^
#17 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 11.03 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 11.03 [javac] ^
#17 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 11.03 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 11.03 [javac] ^
#17 11.13 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.13 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 11.13 [javac] ^
#17 11.13 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.13 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 11.13 [javac] ^
#17 11.13 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.13 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 11.13 [javac] ^
#17 11.13 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.13 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 11.13 [javac] ^
#17 11.13 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.13 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 11.13 [javac] ^
#17 11.13 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.13 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 11.13 [javac] ^
#17 11.23 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.23 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 11.23 [javac] ^
#17 11.23 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 11.23 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 11.23 [javac] ^
#17 11.23 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 11.23 [javac] URL url = new URL(urlPath);
#17 11.23 [javac] ^
#17 11.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 11.33 [javac] BitWriter out = new BitWriter();
#17 11.33 [javac] ^
#17 11.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 11.33 [javac] BitWriter out = new BitWriter();
#17 11.33 [javac] ^
#17 11.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 11.43 [javac] return new Double(v);
#17 11.43 [javac] ^
#17 12.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 12.03 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 12.03 [javac] ^
#17 12.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 12.03 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 12.03 [javac] ^
#17 12.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 12.03 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 12.03 [javac] ^
#17 12.13 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 12.13 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 12.13 [javac] ^
#17 12.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 12.33 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 12.33 [javac] ^
#17 12.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 12.43 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 12.43 [javac] ^
#17 12.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 12.43 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 12.43 [javac] ^
#17 12.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 12.54 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 12.54 [javac] ^
#17 12.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 12.54 [javac] protected ReflectedUniverse r;
#17 12.54 [javac] ^
#17 12.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 12.54 [javac] r = new ReflectedUniverse();
#17 12.54 [javac] ^
#17 12.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1044: warning: [deprecation] NM in UNITS has been deprecated
#17 12.54 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 12.54 [javac] ^
#17 12.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1076: warning: [deprecation] MM in UNITS has been deprecated
#17 12.54 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 12.54 [javac] ^
#17 12.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 12.54 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 12.54 [javac] ^
#17 12.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1091: warning: [deprecation] MM in UNITS has been deprecated
#17 12.54 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 12.54 [javac] ^
#17 12.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#17 12.54 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 12.54 [javac] ^
#17 12.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1116: warning: [deprecation] MM in UNITS has been deprecated
#17 12.54 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 12.54 [javac] ^
#17 12.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1122: warning: [deprecation] MM in UNITS has been deprecated
#17 12.54 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 12.54 [javac] ^
#17 12.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#17 12.54 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 12.54 [javac] ^
#17 12.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1175: warning: [deprecation] MM in UNITS has been deprecated
#17 12.54 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 12.54 [javac] ^
#17 12.64 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 12.64 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 12.64 [javac] ^
#17 12.64 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 12.64 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 12.64 [javac] ^
#17 12.64 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 12.64 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 12.64 [javac] ^
#17 12.64 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 12.64 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 12.64 [javac] ^
#17 12.74 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 12.74 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 12.74 [javac] ^
#17 12.74 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:324: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 12.74 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 12.74 [javac] ^
#17 12.74 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:346: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 12.74 [javac] result[i] = new Double(readNumber().doubleValue());
#17 12.74 [javac] ^
#17 12.78 [javac] Note: Some input files use unchecked or unsafe operations.
#17 12.78 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 12.78 [javac] 56 warnings
#17 12.78
#17 12.78 formats-bsd.jar:
#17 12.79 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 12.90 [resolver:install] Using default POM (ome:formats-bsd:8.6.0-SNAPSHOT)
#17 12.91 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.pom
#17 12.91 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar
#17 12.91 [resolver:install] Installing ome:formats-bsd:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 12.91 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 12.91
#17 12.91 deps-formats-gpl:
#17 12.91
#17 12.91 jar-formats-gpl:
#17 13.02 [echo] isSnapshot = true
#17 13.15
#17 13.15 init-title:
#17 13.15 [echo] ----------=========== formats-gpl ===========----------
#17 13.15
#17 13.15 init-timestamp:
#17 13.15
#17 13.15 init:
#17 13.15
#17 13.15 copy-resources:
#17 13.15 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 13.15 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 13.16
#17 13.16 compile:
#17 13.50 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 13.99 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 14.37 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#17 14.37 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 14.56 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 14.68 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#17 14.75 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 14.96 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 15.08 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#17 15.13 [resolver:resolve] Resolving artifacts
#17 15.14 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 15.14 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 15.40 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 15.40 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 15.75 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#17 15.75 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#17 15.77 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 15.97 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 15.97 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 15.97 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 15.97 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 15.97 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 15.97 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 17.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 17.28 [javac] import loci.formats.codec.BitWriter;
#17 17.28 [javac] ^
#17 17.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 17.28 [javac] import loci.formats.codec.BitWriter;
#17 17.28 [javac] ^
#17 19.38 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 19.38 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 19.38 [javac] ^
#17 19.38 [javac] cast to Object for a varargs call
#17 19.38 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 19.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 19.48 [javac] BitWriter bits = null;
#17 19.48 [javac] ^
#17 19.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 19.48 [javac] bits = new BitWriter(planes[index].length / 8);
#17 19.48 [javac] ^
#17 19.78 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 19.78 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 19.78 [javac] ^
#17 20.18 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 20.18 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 20.18 [javac] ^
#17 20.18 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 20.18 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 20.18 [javac] ^
#17 20.18 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 20.18 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 20.18 [javac] ^
#17 20.18 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 20.18 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 20.18 [javac] ^
#17 20.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:173: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 20.48 [javac] Variable variable = group.findVariable(variableName);
#17 20.48 [javac] ^
#17 20.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 20.48 [javac] Variable variable = group.findVariable(variableName);
#17 20.48 [javac] ^
#17 20.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:203: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 20.48 [javac] List<Attribute> attributes = variable.getAttributes();
#17 20.48 [javac] ^
#17 20.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:245: warning: [deprecation] getName() in CDMNode has been deprecated
#17 20.48 [javac] String groupName = group.getName();
#17 20.48 [javac] ^
#17 20.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getAttributes() in Group has been deprecated
#17 20.48 [javac] List<Attribute> attributes = group.getAttributes();
#17 20.48 [javac] ^
#17 20.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:254: warning: [deprecation] getName() in CDMNode has been deprecated
#17 20.48 [javac] String variableName = variable.getName();
#17 20.48 [javac] ^
#17 20.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:277: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 20.48 [javac] Group nextParent = parent.findGroup(token);
#17 20.48 [javac] ^
#17 20.48 [javac] Note: Some input files use unchecked or unsafe operations.
#17 20.48 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 20.48 [javac] 21 warnings
#17 20.52
#17 20.52 formats-gpl.jar:
#17 20.53 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 20.67 [resolver:install] Using default POM (ome:formats-gpl:8.6.0-SNAPSHOT)
#17 20.67 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.pom
#17 20.76 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar
#17 20.76 [resolver:install] Installing ome:formats-gpl:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 20.76 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 20.76
#17 20.76 deps-bio-formats-plugins:
#17 20.76
#17 20.76 jar-bio-formats-plugins:
#17 20.86 [echo] isSnapshot = true
#17 21.00
#17 21.00 init-title:
#17 21.00 [echo] ----------=========== bio-formats_plugins ===========----------
#17 21.00
#17 21.00 init-timestamp:
#17 21.00
#17 21.00 init:
#17 21.00
#17 21.00 copy-resources:
#17 21.00 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 21.00 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 21.00
#17 21.00 compile:
#17 21.25 [resolver:resolve] Resolving artifacts
#17 21.26 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 21.57 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 21.57 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 21.57 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 21.57 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 21.57 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 21.57 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 22.37 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 22.37 [javac] import loci.common.ReflectedUniverse;
#17 22.37 [javac] ^
#17 22.37 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 22.37 [javac] import loci.common.ReflectedUniverse;
#17 22.37 [javac] ^
#17 22.87 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 22.87 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 22.87 [javac] ^
#17 22.97 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 22.97 [javac] URL url = new URL(urlPath);
#17 22.97 [javac] ^
#17 23.07 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 23.07 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 23.07 [javac] ^
#17 23.07 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 23.07 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 23.07 [javac] ^
#17 23.17 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 23.17 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 23.17 [javac] ^
#17 23.17 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 23.17 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 23.17 [javac] ^
#17 23.37 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 23.37 [javac] url = new URL(path);
#17 23.37 [javac] ^
#17 23.57 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 23.57 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 23.57 [javac] 13 warnings
#17 23.61
#17 23.61 bio-formats-plugins.jar:
#17 23.62 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 23.65 [resolver:install] Using default POM (ome:bio-formats_plugins:8.6.0-SNAPSHOT)
#17 23.65 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.pom
#17 23.67 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar
#17 23.67 [resolver:install] Installing ome:bio-formats_plugins:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 23.68 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 23.68
#17 23.68 deps-bio-formats-tools:
#17 23.68
#17 23.68 jar-bio-formats-tools:
#17 23.76 [echo] isSnapshot = true
#17 23.90
#17 23.90 init-title:
#17 23.90 [echo] ----------=========== bio-formats-tools ===========----------
#17 23.90
#17 23.90 init-timestamp:
#17 23.90
#17 23.90 init:
#17 23.90
#17 23.90 copy-resources:
#17 23.90 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 23.90
#17 23.90 compile:
#17 24.15 [resolver:resolve] Resolving artifacts
#17 24.16 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 24.47 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 24.47 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 24.47 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 24.47 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 24.47 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 24.47 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 25.63 [javac] 4 warnings
#17 25.63
#17 25.63 bio-formats-tools.jar:
#17 25.64 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 25.64 [resolver:install] Using default POM (ome:bio-formats-tools:8.6.0-SNAPSHOT)
#17 25.65 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.pom
#17 25.71 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar
#17 25.71 [resolver:install] Installing ome:bio-formats-tools:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 25.71 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 25.71
#17 25.71 deps-tests:
#17 25.71
#17 25.71 jar-tests:
#17 25.80 [echo] isSnapshot = true
#17 25.92
#17 25.92 init-title:
#17 25.93 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 25.93
#17 25.93 init-timestamp:
#17 25.93
#17 25.93 init:
#17 25.93
#17 25.93 copy-resources:
#17 25.93 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 25.93
#17 25.93 compile:
#17 26.22 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 26.32 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 26.68 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 26.70 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 27.24 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 27.67 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 27.69 [resolver:resolve] Resolving artifacts
#17 27.70 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 27.77 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 28.12 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 28.13 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 28.66 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 28.94 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 28.95 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 29.15 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 29.15 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 29.15 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 29.15 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 29.15 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 29.25 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 30.26 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 30.26 [javac] int index = unflattenedReader.getCoreIndex();
#17 30.26 [javac] ^
#17 30.26 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 30.26 [javac] reader.setCoreIndex(index);
#17 30.26 [javac] ^
#17 30.46 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 30.46 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 30.46 [javac] ^
#17 30.46 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 30.46 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 30.46 [javac] ^
#17 30.76 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 30.76 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 30.76 [javac] ^
#17 30.76 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 30.76 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 30.76 [javac] ^
#17 30.76 [javac] Note: Some input files use unchecked or unsafe operations.
#17 30.76 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 30.76 [javac] 10 warnings
#17 30.77
#17 30.77 tests.jar:
#17 30.77 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 30.78 [resolver:install] Using default POM (ome:test-suite:8.6.0-SNAPSHOT)
#17 30.79 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.pom
#17 30.79 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.jar
#17 30.79 [resolver:install] Installing ome:test-suite:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 30.79 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 30.79
#17 30.79 jars:
#17 30.79
#17 30.79 copy-jars:
#17 30.79
#17 30.79 deps-formats-api:
#17 30.85 [echo] isSnapshot = true
#17 30.89
#17 30.89 install-pom:
#17 31.01 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/pom-bio-formats-8.6.0-SNAPSHOT.pom
#17 31.01 [resolver:install] Installing ome:pom-bio-formats:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 31.01 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 31.01
#17 31.01 jar-formats-api:
#17 31.10 [echo] isSnapshot = true
#17 31.22
#17 31.22 init-title:
#17 31.22 [echo] ----------=========== formats-api ===========----------
#17 31.22
#17 31.22 init-timestamp:
#17 31.22
#17 31.22 init:
#17 31.22
#17 31.22 copy-resources:
#17 31.22
#17 31.22 compile:
#17 31.38 [resolver:resolve] Resolving artifacts
#17 31.39
#17 31.39 formats-api.jar:
#17 31.41 [resolver:install] Using default POM (ome:formats-api:8.6.0-SNAPSHOT)
#17 31.41 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.pom
#17 31.41 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar
#17 31.41 [resolver:install] Installing ome:formats-api:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 31.41 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 31.42
#17 31.42 deps-turbojpeg:
#17 31.42
#17 31.42 jar-turbojpeg:
#17 31.50 [echo] isSnapshot = true
#17 31.62
#17 31.62 init-title:
#17 31.62 [echo] ----------=========== turbojpeg ===========----------
#17 31.62
#17 31.62 init-timestamp:
#17 31.62
#17 31.62 init:
#17 31.62
#17 31.62 copy-resources:
#17 31.62
#17 31.62 compile:
#17 31.63 [resolver:resolve] Resolving artifacts
#17 31.63
#17 31.63 jar:
#17 31.64 [resolver:install] Using default POM (ome:turbojpeg:8.6.0-SNAPSHOT)
#17 31.64 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.pom
#17 31.64 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar
#17 31.64 [resolver:install] Installing ome:turbojpeg:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 31.65 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 31.65
#17 31.65 deps-formats-bsd:
#17 31.65
#17 31.65 jar-formats-bsd:
#17 31.73 [echo] isSnapshot = true
#17 31.85
#17 31.85 init-title:
#17 31.85 [echo] ----------=========== formats-bsd ===========----------
#17 31.85
#17 31.85 init-timestamp:
#17 31.85
#17 31.85 init:
#17 31.85
#17 31.85 copy-resources:
#17 31.85
#17 31.85 compile:
#17 32.04 [resolver:resolve] Resolving artifacts
#17 32.06
#17 32.06 formats-bsd.jar:
#17 32.09 [resolver:install] Using default POM (ome:formats-bsd:8.6.0-SNAPSHOT)
#17 32.09 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.pom
#17 32.09 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar
#17 32.09 [resolver:install] Installing ome:formats-bsd:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 32.09 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 32.10
#17 32.10 deps-formats-gpl:
#17 32.10
#17 32.10 jar-formats-gpl:
#17 32.18 [echo] isSnapshot = true
#17 32.31
#17 32.31 init-title:
#17 32.31 [echo] ----------=========== formats-gpl ===========----------
#17 32.31
#17 32.31 init-timestamp:
#17 32.31
#17 32.31 init:
#17 32.31
#17 32.31 copy-resources:
#17 32.31
#17 32.31 compile:
#17 32.53 [resolver:resolve] Resolving artifacts
#17 32.55
#17 32.55 formats-gpl.jar:
#17 32.58 [resolver:install] Using default POM (ome:formats-gpl:8.6.0-SNAPSHOT)
#17 32.58 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.pom
#17 32.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar
#17 32.58 [resolver:install] Installing ome:formats-gpl:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 32.58 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 32.58
#17 32.58 deps-bio-formats-plugins:
#17 32.58
#17 32.58 jar-bio-formats-plugins:
#17 32.66 [echo] isSnapshot = true
#17 32.79
#17 32.79 init-title:
#17 32.79 [echo] ----------=========== bio-formats_plugins ===========----------
#17 32.79
#17 32.79 init-timestamp:
#17 32.79
#17 32.79 init:
#17 32.79
#17 32.79 copy-resources:
#17 32.79
#17 32.79 compile:
#17 33.02 [resolver:resolve] Resolving artifacts
#17 33.03
#17 33.03 bio-formats-plugins.jar:
#17 33.04 [resolver:install] Using default POM (ome:bio-formats_plugins:8.6.0-SNAPSHOT)
#17 33.04 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.pom
#17 33.04 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar
#17 33.04 [resolver:install] Installing ome:bio-formats_plugins:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 33.05 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 33.05
#17 33.05 deps-bio-formats-tools:
#17 33.05
#17 33.05 jar-bio-formats-tools:
#17 33.13 [echo] isSnapshot = true
#17 33.25
#17 33.25 init-title:
#17 33.25 [echo] ----------=========== bio-formats-tools ===========----------
#17 33.25
#17 33.25 init-timestamp:
#17 33.26
#17 33.26 init:
#17 33.26
#17 33.26 copy-resources:
#17 33.26
#17 33.26 compile:
#17 33.47 [resolver:resolve] Resolving artifacts
#17 33.48
#17 33.48 bio-formats-tools.jar:
#17 33.49 [resolver:install] Using default POM (ome:bio-formats-tools:8.6.0-SNAPSHOT)
#17 33.49 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.pom
#17 33.49 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar
#17 33.49 [resolver:install] Installing ome:bio-formats-tools:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 33.49 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 33.49
#17 33.49 deps-tests:
#17 33.49
#17 33.49 jar-tests:
#17 33.58 [echo] isSnapshot = true
#17 33.71
#17 33.71 init-title:
#17 33.71 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 33.71
#17 33.71 init-timestamp:
#17 33.71
#17 33.71 init:
#17 33.71
#17 33.71 copy-resources:
#17 33.71
#17 33.71 compile:
#17 33.94 [resolver:resolve] Resolving artifacts
#17 33.95
#17 33.95 tests.jar:
#17 33.96 [resolver:install] Using default POM (ome:test-suite:8.6.0-SNAPSHOT)
#17 33.96 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.pom
#17 33.96 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.jar
#17 33.96 [resolver:install] Installing ome:test-suite:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 33.96 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 33.96
#17 33.96 jars:
#17 33.96
#17 33.96 tools:
#17 33.96 [echo] ----------=========== bioformats_package ===========----------
#17 34.05 [echo] isSnapshot = true
#17 34.17
#17 34.17 init-timestamp:
#17 34.17
#17 34.17 bundle:
#17 34.40 [resolver:resolve] Resolving artifacts
#17 34.41 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.43 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.2.2-SNAPSHOT/ome-common-6.2.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.45 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.48 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.48 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.54 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.55 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.60 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.61 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.81 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.85 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.87 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.92 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.93 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.94 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.94 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.08 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.52 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.52 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.52 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.53 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.60 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.61 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.61 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.4-SNAPSHOT/ome-xml-6.5.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.67 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.4-SNAPSHOT/specification-6.5.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.72 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.73 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.4-SNAPSHOT/ome-codecs-1.1.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.74 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.86 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/2.0.3/aircompressor-2.0.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.89 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.96 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.00 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.00 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.10 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.12 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.51 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.53 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.56 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.65 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.67 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.69 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.69 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.90 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.96 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.01 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.10 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.11 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.12 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.23 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.24 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.65 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.66 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.76 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.81 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.82 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.83 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.88 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.21 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.23 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.23 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.25 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.25 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.28 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.63 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.16/logback-core-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.73 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.16/logback-classic-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.11 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 45.82 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 46.42 [resolver:install] Using default POM (ome:bioformats_package:8.6.0-SNAPSHOT)
#17 46.43 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/bioformats_package-8.6.0-SNAPSHOT.pom
#17 46.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/bioformats_package-8.6.0-SNAPSHOT.jar
#17 46.47 [resolver:install] Installing ome:bioformats_package:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 46.47 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 46.48
#17 46.48 BUILD SUCCESSFUL
#17 46.48 Total time: 44 seconds
#17 DONE 47.2s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.0s
#19 exporting to image
#19 exporting layers
#19 exporting layers 3.3s done
#19 writing image sha256:2f5db9b6cf3dab5363d8760712dc30e4d12104e802751be97efd5629110bc9d9 done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 3.3s
Finished: SUCCESS
