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Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.16.1/jackson-databind-2.16.1.jar (1.6 MB at 6.6 MB/s)
#15 496.4 Progress (1): 491/855 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/core5/httpcore5-h2/5.2.4/httpcore5-h2-5.2.4.jar (237 kB at 772 kB/s)
#15 496.5 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/core5/httpcore5/5.2.4/httpcore5-5.2.4.jar (855 kB at 2.6 MB/s)
#15 497.2 [INFO] Building jar: /bio-formats-build/bioformats/components/bundles/bioformats_package/target/bioformats_package-8.4.0-SNAPSHOT.jar
#15 505.0 [INFO] 
#15 505.0 [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ bioformats_package ---
#15 505.0 [INFO] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#15 505.0 [INFO] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/target/bioformats_package-8.4.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#15 505.1 [INFO] 
#15 505.1 [INFO] ---------------------------< ome:test-suite >---------------------------
#15 505.1 [INFO] Building Bio-Formats testing framework 8.4.0-SNAPSHOT            [20/24]
#15 505.1 [INFO] --------------------------------[ jar ]---------------------------------
#15 505.1 Downloading from central: https://repo.maven.apache.org/maven2/nl/javadude/assumeng/assumeng/1.2.4/assumeng-1.2.4.pom
#15 505.1 Progress (1): 2.0 kB
                    
Downloaded from central: https://repo.maven.apache.org/maven2/nl/javadude/assumeng/assumeng/1.2.4/assumeng-1.2.4.pom (2.0 kB at 23 kB/s)
#15 505.1 Downloading from central: https://repo.maven.apache.org/maven2/org/testng/testng/6.5.2/testng-6.5.2.pom
#15 505.2 Progress (1): 4.1 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/testng/testng/6.5.2/testng-6.5.2.pom (7.2 kB at 88 kB/s)
#15 505.2 Downloading from central: https://repo.maven.apache.org/maven2/com/beust/jcommander/1.12/jcommander-1.12.pom
#15 505.3 Progress (1): 4.1 kB
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#15 505.3 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.6.4/slf4j-api-1.6.4.pom
#15 505.4 Progress (1): 2.7 kB
                    
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#15 505.4 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-parent/1.6.4/slf4j-parent-1.6.4.pom
#15 505.4 Progress (1): 4.1 kB
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#15 505.5 Downloading from central: https://repo.maven.apache.org/maven2/org/hamcrest/hamcrest-core/1.2.1/hamcrest-core-1.2.1.pom
#15 505.5 Progress (1): 4.1 kB
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#15 505.6 Downloading from central: https://repo.maven.apache.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#15 505.8 Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#15 506.4 Downloading from imagej.public: https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#15 506.9 Progress (1): 3.2/4.2 kB
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Downloaded from imagej.public: https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (4.2 kB at 7.1 kB/s)
#15 507.0 Downloading from central: https://repo.maven.apache.org/maven2/nl/javadude/assumeng/assumeng/1.2.4/assumeng-1.2.4.jar
#15 507.0 Downloading from central: https://repo.maven.apache.org/maven2/org/hamcrest/hamcrest-core/1.2.1/hamcrest-core-1.2.1.jar
#15 507.0 Downloading from central: https://repo.maven.apache.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
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#15 507.1 Downloaded from central: https://repo.maven.apache.org/maven2/nl/javadude/assumeng/assumeng/1.2.4/assumeng-1.2.4.jar (4.6 kB at 52 kB/s)
#15 507.2 Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#15 507.9 Downloading from imagej.public: https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
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Downloaded from imagej.public: https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (537 kB at 525 kB/s)
#15 509.0 [INFO] 
#15 509.0 [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ test-suite ---
#15 509.0 [INFO] 
#15 509.0 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ test-suite ---
#15 509.0 [INFO] 
#15 509.0 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ test-suite ---
#15 509.0 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/test-suite' && 'git' 'rev-parse' '--verify' 'HEAD'
#15 509.0 [INFO] Working directory: /bio-formats-build/bioformats/components/test-suite
#15 509.0 [INFO] Storing buildNumber: 8446dc8c88a1cf82dfda5bfe3dd42919a5055fa0 at timestamp: 1766327634979
#15 509.0 [INFO] Storing buildScmBranch: merge_ci
#15 509.0 [INFO] 
#15 509.0 [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ test-suite ---
#15 509.0 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#15 509.0 [INFO] Copying 0 resource
#15 509.0 [INFO] skip non existing resourceDirectory /bio-formats-build/bioformats/components/test-suite/lib
#15 509.0 [INFO] Copying 0 resource
#15 509.0 [INFO] Copying 0 resource
#15 509.0 [INFO] 
#15 509.0 [INFO] --- maven-compiler-plugin:3.14.0:compile (default-compile) @ test-suite ---
#15 509.0 [INFO] Recompiling the module because of changed dependency.
#15 509.0 [INFO] Compiling 23 source files with javac [debug release 8] to target/classes
#15 509.3 [WARNING] source value 8 is obsolete and will be removed in a future release
#15 509.3 [WARNING] target value 8 is obsolete and will be removed in a future release
#15 509.3 [WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
#15 509.3 [INFO] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java: Some input files use or override a deprecated API.
#15 509.3 [INFO] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java: Recompile with -Xlint:deprecation for details.
#15 509.3 [INFO] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/ConfigurationTree.java: Some input files use unchecked or unsafe operations.
#15 509.3 [INFO] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/ConfigurationTree.java: Recompile with -Xlint:unchecked for details.
#15 509.3 [INFO] 
#15 509.3 [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ test-suite ---
#15 509.3 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#15 509.3 [INFO] Copying 0 resource
#15 509.3 [INFO] 
#15 509.3 [INFO] --- maven-compiler-plugin:3.14.0:testCompile (default-testCompile) @ test-suite ---
#15 509.3 [INFO] Recompiling the module because of changed dependency.
#15 509.3 [INFO] Compiling 1 source file with javac [debug release 8] to target/test-classes
#15 509.4 [WARNING] source value 8 is obsolete and will be removed in a future release
#15 509.4 [WARNING] target value 8 is obsolete and will be removed in a future release
#15 509.4 [WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
#15 509.4 [INFO] 
#15 509.4 [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ test-suite ---
#15 509.4 [INFO] 
#15 509.4 [INFO] -------------------------------------------------------
#15 509.4 [INFO]  T E S T S
#15 509.4 [INFO] -------------------------------------------------------
#15 509.5 [INFO] Running loci.tests.testng.ConfigurationTreeTest
#15 509.9 [INFO] Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.308 s - in loci.tests.testng.ConfigurationTreeTest
#15 510.2 [INFO] 
#15 510.2 [INFO] Results:
#15 510.2 [INFO] 
#15 510.2 [INFO] Tests run: 16, Failures: 0, Errors: 0, Skipped: 0
#15 510.2 [INFO] 
#15 510.2 [INFO] 
#15 510.2 [INFO] --- maven-jar-plugin:3.1.0:jar (default-jar) @ test-suite ---
#15 510.2 [INFO] Building jar: /bio-formats-build/bioformats/components/test-suite/target/test-suite-8.4.0-SNAPSHOT.jar
#15 510.2 [INFO] 
#15 510.2 [INFO] >>> maven-source-plugin:3.0.1:jar (default) > generate-sources @ test-suite >>>
#15 510.2 [INFO] 
#15 510.2 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ test-suite ---
#15 510.2 [INFO] 
#15 510.2 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ test-suite ---
#15 510.2 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/test-suite' && 'git' 'rev-parse' '--verify' 'HEAD'
#15 510.2 [INFO] Working directory: /bio-formats-build/bioformats/components/test-suite
#15 510.2 [INFO] Storing buildNumber: 8446dc8c88a1cf82dfda5bfe3dd42919a5055fa0 at timestamp: 1766327636197
#15 510.2 [INFO] Storing buildScmBranch: merge_ci
#15 510.2 [INFO] 
#15 510.2 [INFO] <<< maven-source-plugin:3.0.1:jar (default) < generate-sources @ test-suite <<<
#15 510.2 [INFO] 
#15 510.2 [INFO] 
#15 510.2 [INFO] --- maven-source-plugin:3.0.1:jar (default) @ test-suite ---
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#15 510.2 [INFO] ----------------------< ome:bio-formats-examples >----------------------
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#15 511.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-exec/1.1/commons-exec-1.1.jar
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#15 511.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-exec/1.1/commons-exec-1.1.jar (53 kB at 157 kB/s)
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#15 511.4 Executing ReadPhysicalSize
#15 511.9 Physical calibration - Image: 0
#15 511.9 	X = 1.0 nm = 0.001 µm
#15 511.9 	Y = 0.1 µm = 0.1 µm
#15 511.9 Success
#15 511.9 Executing FileConvert
#15 512.2 Success
#15 512.2 Executing FileExport
#15 512.2 Success
#15 512.2 Executing FileExportSPW
#15 512.8 Success
#15 512.8 Executing SimpleTiledWriter
#15 512.8 Success
#15 512.8 Executing TiledReaderWriter
#15 512.8 Success
#15 512.8 Executing TiledReaderWriter
#15 512.9 Success
#15 512.9 Executing OverlappedTiledWriter
#15 513.1 Success
#15 513.1 Executing OverlappedTiledWriter
#15 513.3 Success
#15 513.3 Executing ReadWriteInMemory
#15 513.3 Reading file into memory from disk...
#15 513.3 0 bytes read.
#15 513.3 
#15 513.3 Reading image data from memory...
#15 513.3 Series count: 1
#15 513.3 First series:
#15 513.3 	Image count = 1
#15 513.3 	SizeX = 512
#15 513.3 	SizeY = 512
#15 513.3 	SizeZ = 1
#15 513.3 	SizeC = 1
#15 513.3 	SizeT = 1
#15 513.3 
#15 513.3 Writing planes to destination in memory: .
#15 513.3 
#15 513.3 Flushing image data to disk...
#15 513.3 Success
#15 513.3 Executing OrthogonalReader
#15 513.3 2025-12-21 14:33:59,275 [ExampleSuite.main()] INFO  loci.formats.ImageReader - FakeReader initializing /bio-formats-build/bio-formats-examples/target/classes/test.fake
#15 537.6 Success
#15 537.6 Executing SubResolutionExample
#15 537.6 Initializing file: /bio-formats-build/bio-formats-examples/target/classes/test&resolutions=4.fake
#15 537.6 2025-12-21 14:34:23,635 [ExampleSuite.main()] INFO  loci.formats.ImageReader - FakeReader initializing /bio-formats-build/bio-formats-examples/target/classes/test&resolutions=4.fake
#15 537.6   Series count = 1
#15 537.6     Resolution count for series #0 = 4
#15 537.6       Resolution #0 dimensions = 512 x 512
#15 537.6       Resolution #1 dimensions = 256 x 256
#15 537.6       Resolution #2 dimensions = 128 x 128
#15 537.6       Resolution #3 dimensions = 64 x 64
#15 537.6 Success
#15 537.6 Executing GeneratePyramidResolutions
#15 537.6 2025-12-21 14:34:23,637 [ExampleSuite.main()] INFO  loci.formats.ImageReader - FakeReader initializing /bio-formats-build/bio-formats-examples/target/classes/test&sizeX=1024&sizeY=1024.fake
#15 537.6 Writing image to '/bio-formats-build/bio-formats-examples/target/classes/generatedPyramid.ome.tiff'...
#15 537.7 Done.
#15 537.7 Success
#15 537.7 [INFO] 
#15 537.7 [INFO] --- maven-jar-plugin:3.1.0:jar (default-jar) @ bio-formats-examples ---
#15 537.7 [INFO] Building jar: /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.4.0-SNAPSHOT.jar
#15 537.8 [INFO] 
#15 537.8 [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ bio-formats-examples ---
#15 537.8 [INFO] Building jar: /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.4.0-SNAPSHOT-sources.jar
#15 537.8 [INFO] 
#15 537.8 [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ bio-formats-examples ---
#15 537.8 [INFO] Installing /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.4.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-examples/8.4.0-SNAPSHOT/bio-formats-examples-8.4.0-SNAPSHOT.jar
#15 537.8 [INFO] Installing /bio-formats-build/bio-formats-examples/pom.xml to /home/build/.m2/repository/ome/bio-formats-examples/8.4.0-SNAPSHOT/bio-formats-examples-8.4.0-SNAPSHOT.pom
#15 537.8 [INFO] Installing /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.4.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-examples/8.4.0-SNAPSHOT/bio-formats-examples-8.4.0-SNAPSHOT-sources.jar
#15 537.8 [INFO] 
#15 537.8 [INFO] -------------------< ome:bio-formats-documentation >--------------------
#15 537.8 [INFO] Building Bio-Formats documentation 8.4.0-SNAPSHOT                [22/24]
#15 537.8 [INFO] --------------------------------[ jar ]---------------------------------
#15 537.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-dependency-plugin/3.1.1/maven-dependency-plugin-3.1.1.pom
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#15 538.5 [INFO] 
#15 538.5 [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ bio-formats-documentation ---
#15 538.5 [INFO] 
#15 538.5 [INFO] --- maven-resources-plugin:3.1.0:copy-resources (copy-configuration) @ bio-formats-documentation ---
#15 538.6 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#15 538.6 [INFO] Copying 1 resource
#15 538.6 [INFO] Copying 117 resources
#15 538.6 [INFO] 
#15 538.6 [INFO] --- build-helper-maven-plugin:3.0.0:parse-version (parse-version) @ bio-formats-documentation ---
#15 538.6 [INFO] 
#15 538.6 [INFO] --- maven-dependency-plugin:3.1.1:unpack (unpack-ome-xml) @ bio-formats-documentation ---
#15 538.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-impl/2.3/maven-reporting-impl-2.3.pom
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#15 540.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-decoration-model/
#15 540.3 [output clipped, log limit 2MiB reached]
#15 544.2 WARNING: A restricted method in java.lang.System has been called
#15 544.2 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 544.2 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 544.2 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 544.2 
#15 593.6 SLF4J: No SLF4J providers were found.
#15 593.6 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 593.6 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 593.8 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 593.8 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 593.8 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 593.8 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 602.4s

#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.0s

#17 [13/14] RUN ant jars tools
#17 0.332 Buildfile: /bio-formats-build/bioformats/build.xml
#17 0.786      [echo] isSnapshot = true
#17 0.895 
#17 0.895 copy-jars:
#17 0.895 
#17 0.895 deps-formats-api:
#17 0.981      [echo] isSnapshot = true
#17 1.035 
#17 1.035 install-pom:
#17 1.225 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#17 1.563 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 1.567 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 1.568 
#17 1.568 jar-formats-api:
#17 1.680      [echo] isSnapshot = true
#17 1.847 
#17 1.847 init-title:
#17 1.847      [echo] ----------=========== formats-api ===========----------
#17 1.847 
#17 1.847 init-timestamp:
#17 1.856 
#17 1.856 init:
#17 1.856 
#17 1.856 copy-resources:
#17 1.857     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.872      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.874 
#17 1.874 compile:
#17 2.058 [resolver:resolve] Resolving artifacts
#17 2.085     [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 2.297     [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 2.297     [javac]   not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 2.297     [javac]     --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 2.297     [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 2.298     [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 2.298     [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 2.999     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 2.999     [javac] import loci.common.ReflectedUniverse;
#17 2.999     [javac]                   ^
#17 3.299     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.299     [javac]     int currentIndex = r.getCoreIndex();
#17 3.299     [javac]                         ^
#17 3.300     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.300     [javac]     r.setCoreIndex(coreIndex);
#17 3.300     [javac]      ^
#17 3.300     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.300     [javac]     r.setCoreIndex(currentIndex);
#17 3.300     [javac]      ^
#17 3.400     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.400     [javac]   public void setCoreIndex(int no) {
#17 3.400     [javac]               ^
#17 3.401     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.401     [javac]   public int getCoreIndex() {
#17 3.401     [javac]              ^
#17 3.401     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.401     [javac]   public int coreIndexToSeries(int index)
#17 3.401     [javac]              ^
#17 3.401     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.401     [javac]   public int seriesToCoreIndex(int series)
#17 3.401     [javac]              ^
#17 3.401     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.401     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#17 3.402     [javac]                             ^
#17 3.502     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.502     [javac]     if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 3.502     [javac]                                              ^
#17 3.502     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.502     [javac]     if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 3.502     [javac]                                              ^
#17 3.502     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.502     [javac]       core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 3.503     [javac]                                                      ^
#17 3.503     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.503     [javac]       core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 3.503     [javac]                                                      ^
#17 3.503     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 3.503     [javac]       Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 3.503     [javac]                                        ^
#17 3.604     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.604     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#17 3.604     [javac]     ^
#17 3.604     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.604     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#17 3.604     [javac]                               ^
#17 3.705     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.705     [javac]   public void setCoreIndex(int no) {
#17 3.705     [javac]               ^
#17 3.705     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.705     [javac]   public int getCoreIndex() {
#17 3.705     [javac]              ^
#17 3.705     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.705     [javac]   public int coreIndexToSeries(int index) {
#17 3.705     [javac]              ^
#17 3.705     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.705     [javac]   public int seriesToCoreIndex(int series) {
#17 3.705     [javac]              ^
#17 3.705     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.705     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#17 3.706     [javac]                             ^
#17 3.706     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.706     [javac]     return getReader().getCoreMetadataList();
#17 3.706     [javac]                       ^
#17 3.706     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.706     [javac]     return getReader().getCoreIndex();
#17 3.706     [javac]                       ^
#17 3.706     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.706     [javac]     getReader().setCoreIndex(no);
#17 3.706     [javac]                ^
#17 3.706     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.706     [javac]     return getReader().seriesToCoreIndex(series);
#17 3.706     [javac]                       ^
#17 3.706     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.706     [javac]     return getReader().coreIndexToSeries(index);
#17 3.706     [javac]                       ^
#17 3.807     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.807     [javac]   public void setCoreIndex(int no) {
#17 3.807     [javac]               ^
#17 3.807     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.807     [javac]   public int getCoreIndex() {
#17 3.807     [javac]              ^
#17 3.807     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.807     [javac]   public int coreIndexToSeries(int index) {
#17 3.807     [javac]              ^
#17 3.807     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.807     [javac]   public int seriesToCoreIndex(int series) {
#17 3.807     [javac]              ^
#17 3.808     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.808     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#17 3.808     [javac]                             ^
#17 3.808     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.808     [javac]     List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 3.808     [javac]                                        ^
#17 3.808     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.808     [javac]     return reader.getCoreIndex();
#17 3.808     [javac]                  ^
#17 3.808     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.808     [javac]     reader.setCoreIndex(no);
#17 3.808     [javac]           ^
#17 3.808     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.808     [javac]     return reader.seriesToCoreIndex(series);
#17 3.808     [javac]                  ^
#17 3.808     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.808     [javac]     return reader.coreIndexToSeries(index);
#17 3.808     [javac]                  ^
#17 3.909     [javac] Note: Some input files use unchecked or unsafe operations.
#17 3.909     [javac] Note: Recompile with -Xlint:unchecked for details.
#17 3.909     [javac] 40 warnings
#17 3.958 
#17 3.958 formats-api.jar:
#17 3.958     [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 3.985       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 4.022 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#17 4.026 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#17 4.027 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#17 4.028 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 4.030 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 4.031 
#17 4.031 deps-turbojpeg:
#17 4.031 
#17 4.031 jar-turbojpeg:
#17 4.134      [echo] isSnapshot = true
#17 4.276 
#17 4.276 init-title:
#17 4.276      [echo] ----------=========== turbojpeg ===========----------
#17 4.276 
#17 4.276 init-timestamp:
#17 4.277 
#17 4.277 init:
#17 4.277 
#17 4.277 copy-resources:
#17 4.277     [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.278 
#17 4.278 compile:
#17 4.288 [resolver:resolve] Resolving artifacts
#17 4.291     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.493     [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 4.493     [javac]   not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 4.493     [javac]     --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 4.493     [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 4.493     [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 4.494     [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 5.294     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.294     [javac]   protected void finalize() throws Throwable {
#17 5.294     [javac]                  ^
#17 5.294     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.294     [javac]       super.finalize();
#17 5.294     [javac]            ^
#17 5.294     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.295     [javac]   protected void finalize() throws Throwable {
#17 5.295     [javac]                  ^
#17 5.295     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.295     [javac]       super.finalize();
#17 5.295     [javac]            ^
#17 5.295     [javac] 8 warnings
#17 5.295 
#17 5.295 jar:
#17 5.299       [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 5.486 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#17 5.494 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#17 5.496 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#17 5.498 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 5.501 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 5.502 
#17 5.502 deps-formats-bsd:
#17 5.502 
#17 5.502 jar-formats-bsd:
#17 5.623      [echo] isSnapshot = true
#17 5.773 
#17 5.773 init-title:
#17 5.773      [echo] ----------=========== formats-bsd ===========----------
#17 5.773 
#17 5.773 init-timestamp:
#17 5.774 
#17 5.774 init:
#17 5.774 
#17 5.774 copy-resources:
#17 5.774     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.777      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.778 
#17 5.778 compile:
#17 6.026 [resolver:resolve] Resolving artifacts
#17 6.051     [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 6.260     [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 6.260     [javac]   not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 6.260     [javac]     --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 6.260     [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 6.260     [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 6.360     [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 7.561     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 7.561     [javac] import loci.common.ReflectedUniverse;
#17 7.561     [javac]                   ^
#17 8.062     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.062     [javac]       core.size() != reader.getCoreMetadataList().size())
#17 8.062     [javac]                            ^
#17 8.062     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.062     [javac]       List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 8.062     [javac]                                          ^
#17 8.062     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.062     [javac]     int n = reader.getCoreMetadataList().size();
#17 8.062     [javac]                   ^
#17 8.062     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 8.062     [javac]     reader.setCoreIndex(coreIndex);
#17 8.062     [javac]           ^
#17 8.062     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.062     [javac]     int n = reader.getCoreMetadataList().size();
#17 8.062     [javac]                   ^
#17 8.062     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.062     [javac]     int n = reader.getCoreMetadataList().size();
#17 8.062     [javac]                   ^
#17 8.062     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 8.062     [javac]     if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 8.062     [javac]                                         ^
#17 8.062     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.062     [javac]     int n = reader.getCoreMetadataList().size();
#17 8.062     [javac]                   ^
#17 8.062     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 8.062     [javac]     if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 8.062     [javac]                                         ^
#17 8.062     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.062     [javac]     int n = reader.getCoreMetadataList().size();
#17 8.062     [javac]                   ^
#17 8.063     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 8.063     [javac]     if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 8.063     [javac]                                  ^
#17 8.063     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 8.063     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 8.063     [javac]                  ^
#17 8.063     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 8.063     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 8.063     [javac]                                              ^
#17 8.063     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.063     [javac]     return noStitch ? reader.getCoreMetadataList() : core;
#17 8.063     [javac]                             ^
#17 8.063     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.063     [javac]     if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 8.063     [javac]               ^
#17 8.063     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.063     [javac]       seriesCount = reader.getCoreMetadataList().size();
#17 8.063     [javac]                           ^
#17 8.063     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.063     [javac]       if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 8.063     [javac]                 ^
#17 8.063     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.064     [javac]     if (reader.getCoreMetadataList().size() > 1) return 0;
#17 8.064     [javac]               ^
#17 8.164     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.164     [javac]       r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 8.164     [javac]                            ^
#17 8.264     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.264     [javac]     int seriesCount = unwrap().getCoreMetadataList().size();
#17 8.264     [javac]                               ^
#17 8.264     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 8.264     [javac]       URLConnection conn = new URL(query.toString()).openConnection();
#17 8.264     [javac]                            ^
#17 8.264     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 8.264     [javac]       URL url = new URL(urlPath);
#17 8.264     [javac]                 ^
#17 8.365     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 8.365     [javac]     BitWriter out = new BitWriter();
#17 8.365     [javac]     ^
#17 8.365     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 8.365     [javac]     BitWriter out = new BitWriter();
#17 8.365     [javac]                         ^
#17 8.565     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.565     [javac]       return new Double(v);
#17 8.565     [javac]              ^
#17 9.166     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 9.166     [javac]     return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 9.166     [javac]                                         ^
#17 9.166     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 9.166     [javac]     return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 9.166     [javac]                                         ^
#17 9.166     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.166     [javac]     return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 9.166     [javac]                                         ^
#17 9.266     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.266     [javac]                channelNames.put(new Integer(channelNames.size()), value);
#17 9.266     [javac]                                 ^
#17 9.466     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.466     [javac]       OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 9.466     [javac]                                                                    ^
#17 9.567     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 9.567     [javac]     StreamTokenizer st = new StreamTokenizer(in);
#17 9.567     [javac]                          ^
#17 9.667     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.667     [javac] 									store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 9.667     [javac] 									                                    ^
#17 9.667     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.667     [javac]     core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 9.668     [javac]                                                    ^
#17 9.668     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.668     [javac]   protected ReflectedUniverse r;
#17 9.668     [javac]             ^
#17 9.668     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.668     [javac]       r = new ReflectedUniverse();
#17 9.668     [javac]               ^
#17 9.768     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#17 9.768     [javac]           wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 9.768     [javac]                                                                               ^
#17 9.768     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#17 9.768     [javac]           double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 9.768     [javac]                                            ^
#17 9.768     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#17 9.768     [javac]         double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 9.768     [javac]                                                                    ^
#17 9.768     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 9.768     [javac]         double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 9.768     [javac]                                                                    ^
#17 9.769     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1111: warning: [deprecation] MM in UNITS has been deprecated
#17 9.769     [javac]         volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 9.769     [javac]                                                                                        ^
#17 9.769     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1115: warning: [deprecation] MM in UNITS has been deprecated
#17 9.769     [javac]         volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 9.769     [javac]                                                                                         ^
#17 9.769     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1121: warning: [deprecation] MM in UNITS has been deprecated
#17 9.769     [javac]         volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 9.769     [javac]                                                                                        ^
#17 9.769     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1169: warning: [deprecation] MM in UNITS has been deprecated
#17 9.769     [javac]             double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 9.769     [javac]                                              ^
#17 9.769     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1174: warning: [deprecation] MM in UNITS has been deprecated
#17 9.769     [javac]             double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 9.769     [javac]                                              ^
#17 9.869     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.869     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.869     [javac]               ^
#17 9.869     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.869     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.869     [javac]                                            ^
#17 9.869     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.869     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.869     [javac]               ^
#17 9.870     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.870     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.870     [javac]                                             ^
#17 9.870     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 9.870     [javac]       libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 9.870     [javac]                                        ^
#17 9.870     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.870     [javac]         doubleResult[i] = new Double(result.get(i).doubleValue());
#17 9.870     [javac]                           ^
#17 9.870     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.870     [javac]       result[i] = new Double(readNumber().doubleValue());
#17 9.870     [javac]                   ^
#17 9.946     [javac] Note: Some input files use unchecked or unsafe operations.
#17 9.946     [javac] Note: Recompile with -Xlint:unchecked for details.
#17 9.946     [javac] 56 warnings
#17 9.946 
#17 9.946 formats-bsd.jar:
#17 9.958       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 10.32 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#17 10.32 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#17 10.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#17 10.33 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 10.33 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 10.33 
#17 10.33 deps-formats-gpl:
#17 10.33 
#17 10.33 jar-formats-gpl:
#17 10.44      [echo] isSnapshot = true
#17 10.58 
#17 10.58 init-title:
#17 10.58      [echo] ----------=========== formats-gpl ===========----------
#17 10.58 
#17 10.58 init-timestamp:
#17 10.58 
#17 10.58 init:
#17 10.58 
#17 10.58 copy-resources:
#17 10.59     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 10.59      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 10.59 
#17 10.59 compile:
#17 10.95 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 11.48 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 11.87 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#17 11.87 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 12.09 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 12.33 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#17 12.34 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 12.61 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 12.73 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#17 12.78 [resolver:resolve] Resolving artifacts
#17 12.79 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 12.79 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 13.08 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 13.08 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 13.56 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#17 13.79 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#17 13.81     [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 14.02     [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 14.02     [javac]   not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 14.02     [javac]     --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 14.02     [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 14.02     [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 14.02     [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 15.32     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.32     [javac] import loci.formats.codec.BitWriter;
#17 15.32     [javac]                          ^
#17 15.32     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.32     [javac] import loci.formats.codec.BitWriter;
#17 15.32     [javac]                          ^
#17 17.62     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 17.62     [javac]       LOGGER.trace("Parsing tokens: {}", tokens);
#17 17.62     [javac]                                          ^
#17 17.62     [javac]   cast to Object for a varargs call
#17 17.62     [javac]   cast to Object[] for a non-varargs call and to suppress this warning
#17 17.72     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 17.72     [javac]     BitWriter bits = null;
#17 17.72     [javac]     ^
#17 17.72     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 17.72     [javac]       bits = new BitWriter(planes[index].length / 8);
#17 17.72     [javac]                  ^
#17 18.02     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 18.02     [javac]     CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 18.02     [javac]                                                    ^
#17 18.52     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 18.52     [javac]       store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 18.52     [javac]                                   ^
#17 18.52     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 18.52     [javac]       AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 18.52     [javac]                              ^
#17 18.52     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 18.52     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 18.52     [javac]     ^
#17 18.52     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 18.52     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 18.52     [javac]                          ^
#17 18.82     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 18.82     [javac]     Variable variable = group.findVariable(variableName);
#17 18.82     [javac]                              ^
#17 18.82     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 18.82     [javac]     Variable variable = group.findVariable(variableName);
#17 18.82     [javac]                              ^
#17 18.82     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 18.82     [javac]       List<Attribute> attributes = variable.getAttributes();
#17 18.82     [javac]                                            ^
#17 18.82     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 18.82     [javac]       String groupName = group.getName();
#17 18.82     [javac]                               ^
#17 18.82     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 18.82     [javac]       List<Attribute> attributes = group.getAttributes();
#17 18.82     [javac]                                         ^
#17 18.82     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 18.82     [javac]         String variableName = variable.getName();
#17 18.82     [javac]                                       ^
#17 18.82     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 18.82     [javac]       Group nextParent = parent.findGroup(token);
#17 18.82     [javac]                                ^
#17 18.82     [javac] Note: Some input files use unchecked or unsafe operations.
#17 18.82     [javac] Note: Recompile with -Xlint:unchecked for details.
#17 18.82     [javac] 21 warnings
#17 18.84 
#17 18.84 formats-gpl.jar:
#17 18.85       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 19.00 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#17 19.00 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#17 19.00 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#17 19.00 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 19.01 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 19.01 
#17 19.01 deps-bio-formats-plugins:
#17 19.01 
#17 19.01 jar-bio-formats-plugins:
#17 19.10      [echo] isSnapshot = true
#17 19.26 
#17 19.26 init-title:
#17 19.26      [echo] ----------=========== bio-formats_plugins ===========----------
#17 19.26 
#17 19.26 init-timestamp:
#17 19.26 
#17 19.26 init:
#17 19.26 
#17 19.26 copy-resources:
#17 19.26     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 19.26      [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 19.26 
#17 19.26 compile:
#17 19.54 [resolver:resolve] Resolving artifacts
#17 19.55     [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 19.86     [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 19.86     [javac]   not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 19.86     [javac]     --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 19.86     [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 19.86     [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 19.86     [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 20.76     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 20.76     [javac] import loci.common.ReflectedUniverse;
#17 20.76     [javac]                   ^
#17 20.76     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 20.76     [javac] import loci.common.ReflectedUniverse;
#17 20.76     [javac]                   ^
#17 21.26     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 21.26     [javac]     "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 21.26     [javac]                                      ^
#17 21.36     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 21.36     [javac]     URL url = new URL(urlPath);
#17 21.36     [javac]               ^
#17 21.36     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.36     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#17 21.36     [javac]         ^
#17 21.36     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.36     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#17 21.36     [javac]                                   ^
#17 21.56     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.56     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#17 21.56     [javac]     ^
#17 21.56     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.56     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#17 21.56     [javac]                                ^
#17 21.76     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 21.76     [javac]       url = new URL(path);
#17 21.76     [javac]             ^
#17 21.96     [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 21.96     [javac] Note: Recompile with -Xlint:unchecked for details.
#17 21.96     [javac] 13 warnings
#17 21.96 
#17 21.96 bio-formats-plugins.jar:
#17 21.97       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 22.00 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#17 22.00 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#17 22.00 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#17 22.00 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 22.01 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 22.01 
#17 22.01 deps-bio-formats-tools:
#17 22.01 
#17 22.01 jar-bio-formats-tools:
#17 22.09      [echo] isSnapshot = true
#17 22.23 
#17 22.23 init-title:
#17 22.23      [echo] ----------=========== bio-formats-tools ===========----------
#17 22.23 
#17 22.23 init-timestamp:
#17 22.23 
#17 22.23 init:
#17 22.23 
#17 22.23 copy-resources:
#17 22.23     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 22.23 
#17 22.23 compile:
#17 22.48 [resolver:resolve] Resolving artifacts
#17 22.48     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 22.69     [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 22.69     [javac]   not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 22.69     [javac]     --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 22.69     [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 22.69     [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 22.69     [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 23.89     [javac] 4 warnings
#17 23.91 
#17 23.91 bio-formats-tools.jar:
#17 23.91       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 23.92 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#17 23.92 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#17 23.92 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#17 23.92 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 23.93 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 23.93 
#17 23.93 deps-tests:
#17 23.93 
#17 23.93 jar-tests:
#17 24.01      [echo] isSnapshot = true
#17 24.15 
#17 24.15 init-title:
#17 24.15      [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 24.15 
#17 24.15 init-timestamp:
#17 24.15 
#17 24.15 init:
#17 24.15 
#17 24.15 copy-resources:
#17 24.15     [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 24.15 
#17 24.15 compile:
#17 24.47 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.59 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 26.88 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 26.90 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 27.32 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 27.78 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 27.80 [resolver:resolve] Resolving artifacts
#17 27.81 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 27.88 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 29.62 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 29.63 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 30.04 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 30.41 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 30.41     [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 30.62     [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 30.62     [javac]   not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 30.62     [javac]     --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 30.62     [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 30.62     [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 30.62     [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 31.72     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 31.72     [javac]         int index = unflattenedReader.getCoreIndex();
#17 31.72     [javac]                                      ^
#17 31.72     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 31.72     [javac]         reader.setCoreIndex(index);
#17 31.72     [javac]               ^
#17 32.02     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 32.02     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#17 32.02     [javac]                                              ^
#17 32.02     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 32.02     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#17 32.02     [javac]                                              ^
#17 32.30     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 32.30     [javac]         FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 32.30     [javac]                                                    ^
#17 32.30     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 32.30     [javac]         FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 32.30     [javac]                                                    ^
#17 32.30     [javac] Note: Some input files use unchecked or unsafe operations.
#17 32.30     [javac] Note: Recompile with -Xlint:unchecked for details.
#17 32.30     [javac] 10 warnings
#17 32.30 
#17 32.30 tests.jar:
#17 32.31       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 32.32 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#17 32.32 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#17 32.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#17 32.33 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 32.33 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 32.33 
#17 32.33 jars:
#17 32.33 
#17 32.33 copy-jars:
#17 32.33 
#17 32.33 deps-formats-api:
#17 32.38      [echo] isSnapshot = true
#17 32.42 
#17 32.42 install-pom:
#17 32.56 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#17 32.56 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 32.56 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 32.56 
#17 32.56 jar-formats-api:
#17 32.65      [echo] isSnapshot = true
#17 32.80 
#17 32.80 init-title:
#17 32.80      [echo] ----------=========== formats-api ===========----------
#17 32.80 
#17 32.80 init-timestamp:
#17 32.80 
#17 32.80 init:
#17 32.80 
#17 32.80 copy-resources:
#17 32.80 
#17 32.80 compile:
#17 32.95 [resolver:resolve] Resolving artifacts
#17 32.96 
#17 32.96 formats-api.jar:
#17 32.97 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#17 32.98 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#17 32.98 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#17 32.98 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 32.98 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 32.98 
#17 32.98 deps-turbojpeg:
#17 32.98 
#17 32.98 jar-turbojpeg:
#17 33.07      [echo] isSnapshot = true
#17 33.19 
#17 33.19 init-title:
#17 33.19      [echo] ----------=========== turbojpeg ===========----------
#17 33.19 
#17 33.19 init-timestamp:
#17 33.19 
#17 33.19 init:
#17 33.19 
#17 33.19 copy-resources:
#17 33.19 
#17 33.19 compile:
#17 33.20 [resolver:resolve] Resolving artifacts
#17 33.20 
#17 33.20 jar:
#17 33.21 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#17 33.21 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#17 33.21 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#17 33.21 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 33.22 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 33.22 
#17 33.22 deps-formats-bsd:
#17 33.22 
#17 33.22 jar-formats-bsd:
#17 33.30      [echo] isSnapshot = true
#17 33.42 
#17 33.42 init-title:
#17 33.42      [echo] ----------=========== formats-bsd ===========----------
#17 33.42 
#17 33.42 init-timestamp:
#17 33.42 
#17 33.42 init:
#17 33.42 
#17 33.42 copy-resources:
#17 33.42 
#17 33.42 compile:
#17 33.62 [resolver:resolve] Resolving artifacts
#17 33.64 
#17 33.64 formats-bsd.jar:
#17 33.67 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#17 33.67 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#17 33.67 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#17 33.67 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 33.68 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 33.68 
#17 33.68 deps-formats-gpl:
#17 33.68 
#17 33.68 jar-formats-gpl:
#17 33.76      [echo] isSnapshot = true
#17 33.89 
#17 33.89 init-title:
#17 33.89      [echo] ----------=========== formats-gpl ===========----------
#17 33.89 
#17 33.89 init-timestamp:
#17 33.89 
#17 33.89 init:
#17 33.89 
#17 33.89 copy-resources:
#17 33.90 
#17 33.90 compile:
#17 34.12 [resolver:resolve] Resolving artifacts
#17 34.14 
#17 34.14 formats-gpl.jar:
#17 34.17 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#17 34.17 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#17 34.17 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#17 34.17 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 34.18 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 34.18 
#17 34.18 deps-bio-formats-plugins:
#17 34.18 
#17 34.18 jar-bio-formats-plugins:
#17 34.26      [echo] isSnapshot = true
#17 34.39 
#17 34.39 init-title:
#17 34.39      [echo] ----------=========== bio-formats_plugins ===========----------
#17 34.39 
#17 34.39 init-timestamp:
#17 34.39 
#17 34.39 init:
#17 34.39 
#17 34.39 copy-resources:
#17 34.39 
#17 34.39 compile:
#17 34.62 [resolver:resolve] Resolving artifacts
#17 34.63 
#17 34.63 bio-formats-plugins.jar:
#17 34.64 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#17 34.64 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#17 34.65 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#17 34.65 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 34.65 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 34.65 
#17 34.65 deps-bio-formats-tools:
#17 34.65 
#17 34.65 jar-bio-formats-tools:
#17 34.74      [echo] isSnapshot = true
#17 34.86 
#17 34.86 init-title:
#17 34.86      [echo] ----------=========== bio-formats-tools ===========----------
#17 34.86 
#17 34.86 init-timestamp:
#17 34.86 
#17 34.86 init:
#17 34.86 
#17 34.86 copy-resources:
#17 34.86 
#17 34.86 compile:
#17 35.09 [resolver:resolve] Resolving artifacts
#17 35.10 
#17 35.10 bio-formats-tools.jar:
#17 35.11 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#17 35.11 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#17 35.11 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#17 35.11 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 35.11 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 35.11 
#17 35.11 deps-tests:
#17 35.11 
#17 35.11 jar-tests:
#17 35.21      [echo] isSnapshot = true
#17 35.34 
#17 35.34 init-title:
#17 35.34      [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 35.34 
#17 35.34 init-timestamp:
#17 35.34 
#17 35.34 init:
#17 35.34 
#17 35.34 copy-resources:
#17 35.34 
#17 35.34 compile:
#17 35.57 [resolver:resolve] Resolving artifacts
#17 35.58 
#17 35.58 tests.jar:
#17 35.59 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#17 35.59 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#17 35.59 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#17 35.59 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 35.59 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 35.60 
#17 35.60 jars:
#17 35.60 
#17 35.60 tools:
#17 35.60      [echo] ----------=========== bioformats_package ===========----------
#17 35.68      [echo] isSnapshot = true
#17 35.81 
#17 35.81 init-timestamp:
#17 35.81 
#17 35.81 bundle:
#17 36.08 [resolver:resolve] Resolving artifacts
#17 36.09     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.13     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.2-SNAPSHOT/ome-common-6.1.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.15     [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.17     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.18     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.24     [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.25     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.30     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.31     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.53     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.57     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.59     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.64     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.65     [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.66     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.66     [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.82     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.29     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.29     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.29     [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.30     [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.38     [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.39     [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.39     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.2-SNAPSHOT/ome-xml-6.5.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.45     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.2-SNAPSHOT/specification-6.5.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.50     [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.52     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.3-SNAPSHOT/ome-codecs-1.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.53     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.66     [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.74     [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.77     [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.78     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.87     [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.90     [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.32     [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.34     [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.37     [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.47     [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.48     [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.50     [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.51     [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.72     [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.78     [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.84     [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.93     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.94     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.94     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.06     [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.07     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.51     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.52     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.63     [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.68     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.68     [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.69     [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.75     [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.78     [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 40.11     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 40.12     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 40.13     [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 40.14     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 40.15     [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 40.17     [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 40.54     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.16/logback-core-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 40.65     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.16/logback-classic-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 41.04       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 47.81    [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 48.37 [resolver:install] Using default POM (ome:bioformats_package:8.4.0-SNAPSHOT)
#17 48.38 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#17 48.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#17 48.42 [resolver:install] Installing ome:bioformats_package:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 48.42 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 48.43 
#17 48.43 BUILD SUCCESSFUL
#17 48.43 Total time: 48 seconds
#17 DONE 50.5s

#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.2s

#19 exporting to image
#19 exporting layers
#19 exporting layers 3.3s done
#19 writing image sha256:f2ebfc271cceb2474eeeb846df58dbe78c0c66fbb97e735102c90996530b2547 done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 3.3s
Finished: SUCCESS