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#16 442.4 Progress (3): 93 kB | 0.1/1.4 MB | 7.7/12 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-site-model/2.1.0/doxia-site-model-2.1.0.jar
#16 442.4 Progress (3): 93 kB | 0.1/1.4 MB | 12 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-xml/3.0.0/plexus-xml-3.0.0.jar (93 kB at 200 kB/s)
#16 442.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-skin-model/2.1.0/doxia-skin-model-2.1.0.jar
#16 442.4 Progress (3): 0.6/1.4 MB | 12 kB | 183 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-sink-api/2.1.0/doxia-sink-api-2.1.0.jar (12 kB at 25 kB/s)
#16 442.4 Progress (2): 0.7/1.4 MB | 183 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xhtml5/2.1.0/doxia-module-xhtml5-2.1.0.jar
#16 442.4 Progress (2): 0.7/1.4 MB | 183 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-core/2.1.0/doxia-core-2.1.0.jar (183 kB at 378 kB/s)
#16 442.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-velocity/2.3.0/plexus-velocity-2.3.0.jar
#16 442.4 Progress (2): 0.9/1.4 MB | 92 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-site-model/2.1.0/doxia-site-model-2.1.0.jar (92 kB at 182 kB/s)
#16 442.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/velocity/velocity-engine-core/2.4.1/velocity-engine-core-2.4.1.jar
#16 442.5 Progress (2): 1.3/1.4 MB | 19 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-skin-model/2.1.0/doxia-skin-model-2.1.0.jar (19 kB at 35 kB/s)
#16 442.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.20.0/commons-lang3-3.20.0.jar
#16 442.5 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-velocity/2.3.0/plexus-velocity-2.3.0.jar (6.2 kB at 12 kB/s)
#16 442.5 Progress (3): 1.4 MB | 17 kB | 3.2/516 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xhtml5/2.1.0/doxia-module-xhtml5-2.1.0.jar (17 kB at 31 kB/s)
#16 442.5 Progress (2): 1.4 MB | 56/516 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-site-renderer/2.1.0/doxia-site-renderer-2.1.0.jar (1.4 MB at 2.6 MB/s)
#16 442.5 Progress (1): 89/516 kB
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#16 445.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.pom
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#16 445.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.jar
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#16 445.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.1.1/maven-plugin-api-3.1.1.jar
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#16 445.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.1.1/maven-model-builder-3.1.1.jar
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#16 445.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.1.1/maven-aether-provider-3.1.1.jar
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#16 445.7 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar
#16 445.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.1.1/maven-plugin-api-3.1.1.jar (45 kB at 256 kB/s)
#16 445.7 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar
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#16 445.7 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar
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Prog
#16 445.8 [output clipped, log limit 2MiB reached]
#16 495.4 WARNING: A restricted method in java.lang.System has been called
#16 495.4 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#16 495.4 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#16 495.4 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#16 495.4
#16 543.8 SLF4J: No SLF4J providers were found.
#16 543.8 SLF4J: Defaulting to no-operation (NOP) logger implementation
#16 543.8 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#16 544.0 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#16 544.0 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#16 544.0 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#16 544.0 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#16 DONE 552.5s
#17 [13/15] WORKDIR /bio-formats-build/bioformats
#17 DONE 0.2s
#18 [14/15] RUN ant jars tools
#18 0.498 Buildfile: /bio-formats-build/bioformats/build.xml
#18 0.942 [echo] isSnapshot = true
#18 1.051
#18 1.051 copy-jars:
#18 1.051
#18 1.051 deps-formats-api:
#18 1.197 [echo] isSnapshot = true
#18 1.278
#18 1.278 install-pom:
#18 1.481 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/pom-bio-formats-9.0.0-SNAPSHOT.pom
#18 1.495 [resolver:install] Installing ome:pom-bio-formats:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 1.500 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#18 1.502
#18 1.502 jar-formats-api:
#18 1.613 [echo] isSnapshot = true
#18 1.761
#18 1.761 init-title:
#18 1.761 [echo] ----------=========== formats-api ===========----------
#18 1.761
#18 1.761 init-timestamp:
#18 1.771
#18 1.771 init:
#18 1.771
#18 1.771 copy-resources:
#18 1.772 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#18 1.788 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#18 1.791
#18 1.791 compile:
#18 1.982 [resolver:resolve] Resolving artifacts
#18 2.007 [javac] Compiling 59 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#18 2.222 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#18 2.223 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#18 2.223 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#18 3.327 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#18 3.328 [javac] int currentIndex = r.getCoreIndex();
#18 3.328 [javac] ^
#18 3.329 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#18 3.329 [javac] r.setCoreIndex(coreIndex);
#18 3.329 [javac] ^
#18 3.429 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#18 3.430 [javac] r.setCoreIndex(currentIndex);
#18 3.430 [javac] ^
#18 3.530 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#18 3.531 [javac] public void setCoreIndex(int no) {
#18 3.532 [javac] ^
#18 3.532 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#18 3.532 [javac] public int getCoreIndex() {
#18 3.532 [javac] ^
#18 3.533 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#18 3.533 [javac] public int coreIndexToSeries(int index)
#18 3.533 [javac] ^
#18 3.533 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#18 3.533 [javac] public int seriesToCoreIndex(int series)
#18 3.533 [javac] ^
#18 3.533 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 3.533 [javac] public List<CoreMetadata> getCoreMetadataList() {
#18 3.533 [javac] ^
#18 3.634 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#18 3.634 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#18 3.635 [javac] ^
#18 3.635 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#18 3.635 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#18 3.636 [javac] ^
#18 3.636 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 3.636 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#18 3.637 [javac] ^
#18 3.639 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 3.640 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#18 3.640 [javac] ^
#18 3.741 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#18 3.741 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#18 3.742 [javac] ^
#18 3.742 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#18 3.742 [javac] ReflectedUniverse r = new ReflectedUniverse();
#18 3.742 [javac] ^
#18 3.742 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#18 3.742 [javac] ReflectedUniverse r = new ReflectedUniverse();
#18 3.742 [javac] ^
#18 3.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:791: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#18 3.844 [javac] public void setCoreIndex(int no) {
#18 3.844 [javac] ^
#18 3.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#18 3.844 [javac] public int getCoreIndex() {
#18 3.844 [javac] ^
#18 3.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:801: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#18 3.844 [javac] public int coreIndexToSeries(int index) {
#18 3.844 [javac] ^
#18 3.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:796: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#18 3.844 [javac] public int seriesToCoreIndex(int series) {
#18 3.844 [javac] ^
#18 3.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:605: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 3.844 [javac] public List<CoreMetadata> getCoreMetadataList() {
#18 3.844 [javac] ^
#18 3.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:606: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 3.844 [javac] return getReader().getCoreMetadataList();
#18 3.844 [javac] ^
#18 3.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:786: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#18 3.844 [javac] return getReader().getCoreIndex();
#18 3.844 [javac] ^
#18 3.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:792: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#18 3.844 [javac] getReader().setCoreIndex(no);
#18 3.844 [javac] ^
#18 3.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:797: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#18 3.844 [javac] return getReader().seriesToCoreIndex(series);
#18 3.844 [javac] ^
#18 3.844 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:802: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#18 3.944 [javac] return getReader().coreIndexToSeries(index);
#18 3.944 [javac] ^
#18 3.944 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#18 3.944 [javac] public void setCoreIndex(int no) {
#18 3.944 [javac] ^
#18 3.944 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#18 3.944 [javac] public int getCoreIndex() {
#18 3.944 [javac] ^
#18 3.944 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#18 3.944 [javac] public int coreIndexToSeries(int index) {
#18 3.944 [javac] ^
#18 3.944 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#18 3.944 [javac] public int seriesToCoreIndex(int series) {
#18 3.945 [javac] ^
#18 3.945 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 3.945 [javac] public List<CoreMetadata> getCoreMetadataList() {
#18 3.945 [javac] ^
#18 3.945 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 3.945 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#18 3.945 [javac] ^
#18 3.945 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#18 3.945 [javac] return reader.getCoreIndex();
#18 3.945 [javac] ^
#18 3.945 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#18 3.945 [javac] reader.setCoreIndex(no);
#18 3.946 [javac] ^
#18 3.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#18 3.946 [javac] return reader.seriesToCoreIndex(series);
#18 3.946 [javac] ^
#18 3.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#18 3.946 [javac] return reader.coreIndexToSeries(index);
#18 3.946 [javac] ^
#18 4.147 [javac] Note: Some input files use unchecked or unsafe operations.
#18 4.147 [javac] Note: Recompile with -Xlint:unchecked for details.
#18 4.147 [javac] 36 warnings
#18 4.167
#18 4.167 formats-api.jar:
#18 4.169 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#18 4.195 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#18 4.231 [resolver:install] Using default POM (ome:formats-api:9.0.0-SNAPSHOT)
#18 4.236 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.pom
#18 4.237 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar
#18 4.238 [resolver:install] Installing ome:formats-api:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 4.242 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#18 4.243
#18 4.243 deps-turbojpeg:
#18 4.243
#18 4.243 jar-turbojpeg:
#18 4.344 [echo] isSnapshot = true
#18 4.487
#18 4.487 init-title:
#18 4.488 [echo] ----------=========== turbojpeg ===========----------
#18 4.488
#18 4.488 init-timestamp:
#18 4.488
#18 4.488 init:
#18 4.488
#18 4.488 copy-resources:
#18 4.489 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#18 4.489
#18 4.489 compile:
#18 4.500 [resolver:resolve] Resolving artifacts
#18 4.503 [javac] Compiling 8 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#18 4.707 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#18 4.707 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#18 4.707 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#18 5.308 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#18 5.308 [javac] protected void finalize() throws Throwable {
#18 5.308 [javac] ^
#18 5.308 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#18 5.308 [javac] super.finalize();
#18 5.308 [javac] ^
#18 5.308 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#18 5.308 [javac] protected void finalize() throws Throwable {
#18 5.308 [javac] ^
#18 5.308 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#18 5.308 [javac] super.finalize();
#18 5.308 [javac] ^
#18 5.308 [javac] 5 warnings
#18 5.332
#18 5.332 jar:
#18 5.337 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#18 5.507 [resolver:install] Using default POM (ome:turbojpeg:9.0.0-SNAPSHOT)
#18 5.515 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.pom
#18 5.517 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar
#18 5.519 [resolver:install] Installing ome:turbojpeg:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 5.525 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#18 5.527
#18 5.527 deps-formats-bsd:
#18 5.527
#18 5.527 jar-formats-bsd:
#18 5.655 [echo] isSnapshot = true
#18 5.830
#18 5.830 init-title:
#18 5.831 [echo] ----------=========== formats-bsd ===========----------
#18 5.831
#18 5.831 init-timestamp:
#18 5.832
#18 5.832 init:
#18 5.832
#18 5.832 copy-resources:
#18 5.833 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#18 5.836 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#18 5.837
#18 5.837 compile:
#18 6.099 [resolver:resolve] Resolving artifacts
#18 6.119 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#18 6.429 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#18 6.429 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#18 6.429 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#18 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.237 [javac] core.size() != reader.getCoreMetadataList().size())
#18 8.237 [javac] ^
#18 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.237 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#18 8.237 [javac] ^
#18 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.237 [javac] int n = reader.getCoreMetadataList().size();
#18 8.237 [javac] ^
#18 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#18 8.237 [javac] reader.setCoreIndex(coreIndex);
#18 8.237 [javac] ^
#18 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.237 [javac] int n = reader.getCoreMetadataList().size();
#18 8.237 [javac] ^
#18 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.237 [javac] int n = reader.getCoreMetadataList().size();
#18 8.238 [javac] ^
#18 8.238 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#18 8.238 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#18 8.238 [javac] ^
#18 8.238 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.238 [javac] int n = reader.getCoreMetadataList().size();
#18 8.238 [javac] ^
#18 8.238 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#18 8.238 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#18 8.238 [javac] ^
#18 8.238 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.238 [javac] int n = reader.getCoreMetadataList().size();
#18 8.238 [javac] ^
#18 8.238 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#18 8.238 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#18 8.238 [javac] ^
#18 8.238 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#18 8.238 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#18 8.238 [javac] ^
#18 8.238 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#18 8.238 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#18 8.238 [javac] ^
#18 8.238 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.238 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#18 8.238 [javac] ^
#18 8.238 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.238 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#18 8.238 [javac] ^
#18 8.238 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.239 [javac] seriesCount = reader.getCoreMetadataList().size();
#18 8.239 [javac] ^
#18 8.239 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.239 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#18 8.239 [javac] ^
#18 8.239 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.239 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#18 8.239 [javac] ^
#18 8.239 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.239 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#18 8.239 [javac] ^
#18 8.442 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 8.442 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#18 8.442 [javac] ^
#18 8.442 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:232: warning: [deprecation] URL(String) in URL has been deprecated
#18 8.442 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#18 8.442 [javac] ^
#18 8.543 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitBuffer.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#18 8.543 [javac] public class BitBuffer {
#18 8.543 [javac] ^
#18 8.543 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitWriter.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#18 8.543 [javac] public class BitWriter {
#18 8.543 [javac] ^
#18 8.644 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#18 8.644 [javac] BitWriter out = new BitWriter();
#18 8.644 [javac] ^
#18 8.644 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#18 8.644 [javac] BitWriter out = new BitWriter();
#18 8.644 [javac] ^
#18 8.745 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:534: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#18 8.745 [javac] return new Double(v);
#18 8.745 [javac] ^
#18 9.449 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2282: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#18 9.449 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#18 9.449 [javac] ^
#18 9.449 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2289: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#18 9.449 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#18 9.449 [javac] ^
#18 9.449 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2296: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#18 9.449 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#18 9.449 [javac] ^
#18 9.652 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#18 9.652 [javac] channelNames.put(new Integer(channelNames.size()), value);
#18 9.652 [javac] ^
#18 9.953 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:629: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 9.953 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#18 9.953 [javac] ^
#18 9.953 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1387: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#18 9.953 [javac] public MetadataStore getMetadataStoreForDisplay() {
#18 9.953 [javac] ^
#18 10.05 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1405: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#18 10.05 [javac] public MetadataStore getMetadataStoreForConversion() {
#18 10.05 [javac] ^
#18 10.05 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#18 10.05 [javac] StreamTokenizer st = new StreamTokenizer(in);
#18 10.05 [javac] ^
#18 10.15 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#18 10.15 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#18 10.15 [javac] ^
#18 10.25 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 10.25 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#18 10.25 [javac] ^
#18 10.25 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#18 10.25 [javac] protected ReflectedUniverse r;
#18 10.25 [javac] ^
#18 10.25 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#18 10.25 [javac] r = new ReflectedUniverse();
#18 10.25 [javac] ^
#18 10.36 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1044: warning: [deprecation] NM in UNITS has been deprecated
#18 10.36 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#18 10.36 [javac] ^
#18 10.36 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1076: warning: [deprecation] MM in UNITS has been deprecated
#18 10.36 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#18 10.36 [javac] ^
#18 10.36 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#18 10.36 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#18 10.36 [javac] ^
#18 10.36 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1091: warning: [deprecation] MM in UNITS has been deprecated
#18 10.36 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#18 10.36 [javac] ^
#18 10.36 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#18 10.36 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#18 10.36 [javac] ^
#18 10.36 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1116: warning: [deprecation] MM in UNITS has been deprecated
#18 10.36 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#18 10.36 [javac] ^
#18 10.36 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1122: warning: [deprecation] MM in UNITS has been deprecated
#18 10.36 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#18 10.36 [javac] ^
#18 10.36 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#18 10.36 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#18 10.36 [javac] ^
#18 10.36 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1175: warning: [deprecation] MM in UNITS has been deprecated
#18 10.36 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#18 10.36 [javac] ^
#18 10.46 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#18 10.46 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#18 10.46 [javac] ^
#18 10.46 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#18 10.46 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#18 10.46 [javac] ^
#18 10.46 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#18 10.46 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#18 10.46 [javac] ^
#18 10.46 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#18 10.46 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#18 10.46 [javac] ^
#18 10.56 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:113: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#18 10.56 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#18 10.56 [javac] ^
#18 10.56 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:324: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#18 10.56 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#18 10.56 [javac] ^
#18 10.56 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:346: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#18 10.56 [javac] result[i] = new Double(readNumber().doubleValue());
#18 10.56 [javac] ^
#18 10.56 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/UpgradeCheck.java:70: warning: [deprecation] install(String,String) in UpgradeChecker has been deprecated
#18 10.56 [javac] checker.install(url, UpgradeChecker.TOOLS);
#18 10.56 [javac] ^
#18 10.56 [javac] Note: Some input files use unchecked or unsafe operations.
#18 10.56 [javac] Note: Recompile with -Xlint:unchecked for details.
#18 10.56 [javac] 56 warnings
#18 10.58
#18 10.58 formats-bsd.jar:
#18 10.59 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#18 10.70 [resolver:install] Using default POM (ome:formats-bsd:9.0.0-SNAPSHOT)
#18 10.70 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.pom
#18 10.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar
#18 10.70 [resolver:install] Installing ome:formats-bsd:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 10.71 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#18 10.71
#18 10.71 deps-formats-gpl:
#18 10.71
#18 10.71 jar-formats-gpl:
#18 10.80 [echo] isSnapshot = true
#18 10.94
#18 10.94 init-title:
#18 10.94 [echo] ----------=========== formats-gpl ===========----------
#18 10.94
#18 10.94 init-timestamp:
#18 10.94
#18 10.94 init:
#18 10.94
#18 10.94 copy-resources:
#18 10.94 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#18 10.94 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#18 10.94
#18 10.94 compile:
#18 11.25 [resolver:resolve] Resolving artifacts
#18 11.27 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#18 11.58 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#18 11.58 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#18 11.58 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#18 15.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1325: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#18 15.49 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#18 15.49 [javac] ^
#18 15.49 [javac] cast to Object for a varargs call
#18 15.49 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#18 15.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#18 15.59 [javac] BitWriter bits = null;
#18 15.59 [javac] ^
#18 15.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#18 15.59 [javac] bits = new BitWriter(planes[index].length / 8);
#18 15.59 [javac] ^
#18 15.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#18 15.99 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#18 15.99 [javac] ^
#18 16.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:470: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#18 16.59 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#18 16.59 [javac] ^
#18 16.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:503: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#18 16.59 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#18 16.59 [javac] ^
#18 16.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#18 16.59 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#18 16.59 [javac] ^
#18 16.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#18 16.59 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#18 16.59 [javac] ^
#18 16.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#18 16.99 [javac] Variable variable = group.findVariable(variableName);
#18 16.99 [javac] ^
#18 16.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#18 16.99 [javac] Variable variable = group.findVariable(variableName);
#18 16.99 [javac] ^
#18 16.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#18 16.99 [javac] List<Attribute> attributes = variable.getAttributes();
#18 16.99 [javac] ^
#18 16.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#18 16.99 [javac] String groupName = group.getName();
#18 16.99 [javac] ^
#18 16.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#18 16.99 [javac] List<Attribute> attributes = group.getAttributes();
#18 16.99 [javac] ^
#18 16.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#18 16.99 [javac] String variableName = variable.getName();
#18 16.99 [javac] ^
#18 16.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#18 16.99 [javac] Group nextParent = parent.findGroup(token);
#18 16.99 [javac] ^
#18 16.99 [javac] Note: Some input files use unchecked or unsafe operations.
#18 16.99 [javac] Note: Recompile with -Xlint:unchecked for details.
#18 16.99 [javac] 16 warnings
#18 17.00
#18 17.00 formats-gpl.jar:
#18 17.01 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#18 17.13 [resolver:install] Using default POM (ome:formats-gpl:9.0.0-SNAPSHOT)
#18 17.14 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.pom
#18 17.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar
#18 17.14 [resolver:install] Installing ome:formats-gpl:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 17.14 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#18 17.14
#18 17.14 deps-bio-formats-plugins:
#18 17.14
#18 17.14 jar-bio-formats-plugins:
#18 17.23 [echo] isSnapshot = true
#18 17.36
#18 17.36 init-title:
#18 17.36 [echo] ----------=========== bio-formats_plugins ===========----------
#18 17.36
#18 17.36 init-timestamp:
#18 17.36
#18 17.36 init:
#18 17.36
#18 17.36 copy-resources:
#18 17.36 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#18 17.36 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#18 17.36
#18 17.36 compile:
#18 17.70 [resolver:resolve] Resolving artifacts
#18 17.71 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#18 18.02 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#18 18.02 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#18 18.02 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#18 19.52 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:98: warning: [deprecation] install(String,String) in UpgradeChecker has been deprecated
#18 19.52 [javac] success = new UpgradeChecker().install(urlPath, jarPath);
#18 19.52 [javac] ^
#18 19.62 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#18 19.62 [javac] URL url = new URL(urlPath);
#18 19.62 [javac] ^
#18 19.72 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#18 19.72 [javac] ReflectedUniverse r = new ReflectedUniverse();
#18 19.72 [javac] ^
#18 19.72 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#18 19.72 [javac] ReflectedUniverse r = new ReflectedUniverse();
#18 19.72 [javac] ^
#18 19.92 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#18 19.92 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#18 19.92 [javac] ^
#18 19.92 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#18 19.92 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#18 19.92 [javac] ^
#18 20.12 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#18 20.12 [javac] url = new URL(path);
#18 20.12 [javac] ^
#18 20.22 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#18 20.22 [javac] Note: Recompile with -Xlint:unchecked for details.
#18 20.22 [javac] 8 warnings
#18 20.24
#18 20.24 bio-formats-plugins.jar:
#18 20.25 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#18 20.27 [resolver:install] Using default POM (ome:bio-formats_plugins:9.0.0-SNAPSHOT)
#18 20.27 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.pom
#18 20.28 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar
#18 20.28 [resolver:install] Installing ome:bio-formats_plugins:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 20.28 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#18 20.28
#18 20.28 deps-bio-formats-tools:
#18 20.28
#18 20.28 jar-bio-formats-tools:
#18 20.37 [echo] isSnapshot = true
#18 20.54
#18 20.54 init-title:
#18 20.54 [echo] ----------=========== bio-formats-tools ===========----------
#18 20.54
#18 20.54 init-timestamp:
#18 20.54
#18 20.54 init:
#18 20.54
#18 20.54 copy-resources:
#18 20.54 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#18 20.55
#18 20.55 compile:
#18 20.86 [resolver:resolve] Resolving artifacts
#18 20.86 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#18 21.18 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#18 21.18 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#18 21.18 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#18 22.56 [javac] 1 warning
#18 22.56
#18 22.56 bio-formats-tools.jar:
#18 22.57 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#18 22.57 [resolver:install] Using default POM (ome:bio-formats-tools:9.0.0-SNAPSHOT)
#18 22.58 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.pom
#18 22.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar
#18 22.58 [resolver:install] Installing ome:bio-formats-tools:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 22.58 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#18 22.58
#18 22.58 deps-tests:
#18 22.58
#18 22.58 jar-tests:
#18 22.67 [echo] isSnapshot = true
#18 22.80
#18 22.80 init-title:
#18 22.80 [echo] ----------=========== bio-formats-testing-framework ===========----------
#18 22.80
#18 22.80 init-timestamp:
#18 22.80
#18 22.80 init:
#18 22.80
#18 22.80 copy-resources:
#18 22.80 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#18 22.81
#18 22.81 compile:
#18 23.23 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#18 23.64 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#18 24.03 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#18 24.06 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#18 24.34 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#18 24.74 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#18 24.76 [resolver:resolve] Resolving artifacts
#18 24.77 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#18 24.84 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#18 25.18 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#18 25.19 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#18 25.45 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#18 25.74 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#18 25.74 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#18 26.05 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#18 26.05 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#18 26.05 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#18 27.35 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#18 27.35 [javac] int index = unflattenedReader.getCoreIndex();
#18 27.35 [javac] ^
#18 27.35 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#18 27.35 [javac] reader.setCoreIndex(index);
#18 27.35 [javac] ^
#18 27.65 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#18 27.65 [javac] config.setSeries(resolutionReader.getCoreIndex());
#18 27.65 [javac] ^
#18 27.65 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#18 27.65 [javac] config.setSeries(resolutionReader.getCoreIndex());
#18 27.65 [javac] ^
#18 27.95 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#18 27.95 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#18 27.95 [javac] ^
#18 27.95 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#18 27.95 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#18 27.95 [javac] ^
#18 27.95 [javac] Note: Some input files use unchecked or unsafe operations.
#18 27.95 [javac] Note: Recompile with -Xlint:unchecked for details.
#18 27.95 [javac] 7 warnings
#18 27.96
#18 27.96 tests.jar:
#18 27.97 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#18 27.98 [resolver:install] Using default POM (ome:test-suite:9.0.0-SNAPSHOT)
#18 27.99 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.pom
#18 27.99 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.jar
#18 27.99 [resolver:install] Installing ome:test-suite:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 27.99 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#18 27.99
#18 27.99 jars:
#18 27.99
#18 27.99 copy-jars:
#18 27.99
#18 27.99 deps-formats-api:
#18 28.04 [echo] isSnapshot = true
#18 28.09
#18 28.09 install-pom:
#18 28.22 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/pom-bio-formats-9.0.0-SNAPSHOT.pom
#18 28.22 [resolver:install] Installing ome:pom-bio-formats:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 28.23 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#18 28.23
#18 28.23 jar-formats-api:
#18 28.31 [echo] isSnapshot = true
#18 28.44
#18 28.44 init-title:
#18 28.44 [echo] ----------=========== formats-api ===========----------
#18 28.44
#18 28.44 init-timestamp:
#18 28.44
#18 28.44 init:
#18 28.44
#18 28.44 copy-resources:
#18 28.44
#18 28.44 compile:
#18 28.57 [resolver:resolve] Resolving artifacts
#18 28.58
#18 28.58 formats-api.jar:
#18 28.60 [resolver:install] Using default POM (ome:formats-api:9.0.0-SNAPSHOT)
#18 28.61 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.pom
#18 28.61 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar
#18 28.61 [resolver:install] Installing ome:formats-api:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 28.61 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#18 28.61
#18 28.61 deps-turbojpeg:
#18 28.61
#18 28.61 jar-turbojpeg:
#18 28.76 [echo] isSnapshot = true
#18 28.96
#18 28.96 init-title:
#18 28.96 [echo] ----------=========== turbojpeg ===========----------
#18 28.96
#18 28.96 init-timestamp:
#18 28.96
#18 28.96 init:
#18 28.96
#18 28.96 copy-resources:
#18 28.96
#18 28.96 compile:
#18 28.97 [resolver:resolve] Resolving artifacts
#18 28.97
#18 28.97 jar:
#18 28.98 [resolver:install] Using default POM (ome:turbojpeg:9.0.0-SNAPSHOT)
#18 28.99 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.pom
#18 28.99 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar
#18 28.99 [resolver:install] Installing ome:turbojpeg:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 28.99 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#18 29.00
#18 29.00 deps-formats-bsd:
#18 29.00
#18 29.00 jar-formats-bsd:
#18 29.08 [echo] isSnapshot = true
#18 29.22
#18 29.22 init-title:
#18 29.22 [echo] ----------=========== formats-bsd ===========----------
#18 29.22
#18 29.22 init-timestamp:
#18 29.22
#18 29.22 init:
#18 29.22
#18 29.22 copy-resources:
#18 29.22
#18 29.22 compile:
#18 29.43 [resolver:resolve] Resolving artifacts
#18 29.44
#18 29.44 formats-bsd.jar:
#18 29.47 [resolver:install] Using default POM (ome:formats-bsd:9.0.0-SNAPSHOT)
#18 29.47 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.pom
#18 29.47 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar
#18 29.48 [resolver:install] Installing ome:formats-bsd:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 29.48 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#18 29.48
#18 29.48 deps-formats-gpl:
#18 29.48
#18 29.48 jar-formats-gpl:
#18 29.57 [echo] isSnapshot = true
#18 29.71
#18 29.71 init-title:
#18 29.71 [echo] ----------=========== formats-gpl ===========----------
#18 29.71
#18 29.71 init-timestamp:
#18 29.71
#18 29.71 init:
#18 29.71
#18 29.71 copy-resources:
#18 29.71
#18 29.71 compile:
#18 29.98 [resolver:resolve] Resolving artifacts
#18 29.99
#18 29.99 formats-gpl.jar:
#18 30.02 [resolver:install] Using default POM (ome:formats-gpl:9.0.0-SNAPSHOT)
#18 30.03 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.pom
#18 30.03 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar
#18 30.03 [resolver:install] Installing ome:formats-gpl:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 30.03 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#18 30.03
#18 30.03 deps-bio-formats-plugins:
#18 30.03
#18 30.03 jar-bio-formats-plugins:
#18 30.11 [echo] isSnapshot = true
#18 30.23
#18 30.23 init-title:
#18 30.23 [echo] ----------=========== bio-formats_plugins ===========----------
#18 30.23
#18 30.23 init-timestamp:
#18 30.23
#18 30.23 init:
#18 30.23
#18 30.23 copy-resources:
#18 30.24
#18 30.24 compile:
#18 30.52 [resolver:resolve] Resolving artifacts
#18 30.53
#18 30.53 bio-formats-plugins.jar:
#18 30.55 [resolver:install] Using default POM (ome:bio-formats_plugins:9.0.0-SNAPSHOT)
#18 30.55 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.pom
#18 30.55 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar
#18 30.55 [resolver:install] Installing ome:bio-formats_plugins:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 30.55 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#18 30.55
#18 30.55 deps-bio-formats-tools:
#18 30.55
#18 30.55 jar-bio-formats-tools:
#18 30.63 [echo] isSnapshot = true
#18 30.76
#18 30.76 init-title:
#18 30.76 [echo] ----------=========== bio-formats-tools ===========----------
#18 30.76
#18 30.76 init-timestamp:
#18 30.76
#18 30.76 init:
#18 30.76
#18 30.76 copy-resources:
#18 30.76
#18 30.76 compile:
#18 31.02 [resolver:resolve] Resolving artifacts
#18 31.02
#18 31.02 bio-formats-tools.jar:
#18 31.03 [resolver:install] Using default POM (ome:bio-formats-tools:9.0.0-SNAPSHOT)
#18 31.03 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.pom
#18 31.03 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar
#18 31.03 [resolver:install] Installing ome:bio-formats-tools:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 31.04 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#18 31.04
#18 31.04 deps-tests:
#18 31.04
#18 31.04 jar-tests:
#18 31.12 [echo] isSnapshot = true
#18 31.25
#18 31.25 init-title:
#18 31.25 [echo] ----------=========== bio-formats-testing-framework ===========----------
#18 31.25
#18 31.25 init-timestamp:
#18 31.25
#18 31.25 init:
#18 31.25
#18 31.25 copy-resources:
#18 31.25
#18 31.25 compile:
#18 31.52 [resolver:resolve] Resolving artifacts
#18 31.53
#18 31.53 tests.jar:
#18 31.54 [resolver:install] Using default POM (ome:test-suite:9.0.0-SNAPSHOT)
#18 31.54 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.pom
#18 31.54 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.jar
#18 31.54 [resolver:install] Installing ome:test-suite:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 31.55 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#18 31.55
#18 31.55 jars:
#18 31.55
#18 31.55 tools:
#18 31.55 [echo] ----------=========== bioformats_package ===========----------
#18 31.63 [echo] isSnapshot = true
#18 31.77
#18 31.77 init-timestamp:
#18 31.77
#18 31.77 bundle:
#18 32.05 [resolver:resolve] Resolving artifacts
#18 32.06 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.09 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.3.0/ome-common-6.3.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.11 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.13 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.13 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.18 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.20 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.24 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.25 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.44 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.48 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.49 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.54 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.55 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.55 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.56 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 32.68 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.05 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.05 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.05 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.06 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.12 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.12 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.13 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.6.0/ome-xml-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.17 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.6.0/specification-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.22 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.23 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.2.0/ome-codecs-1.2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.24 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5/ome-jai-0.1.5.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.35 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/2.0.3/aircompressor-2.0.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.37 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.43 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.46 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.47 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.54 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.56 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.92 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.94 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 33.96 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.04 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.05 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.07 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.08 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.25 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.30 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.34 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.42 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.4.0/ome-mdbtools-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.44 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.4.0/metakit-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.44 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.4.0/ome-poi-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.53 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.54 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.10.0/cdm-core-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.90 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.10.0/httpservices-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 34.91 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.14/httpclient-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 35.00 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 35.06 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.14/httpmime-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 35.06 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-math3/3.6.1/commons-math3-3.6.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 35.34 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.8/re2j-1.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 35.34 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 35.66 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 35.67 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 35.68 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.18/slf4j-api-2.0.18.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 35.69 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 35.69 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 35.72 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 36.05 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.5.37/logback-core-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 36.14 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.5.37/logback-classic-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 36.60 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#18 42.93 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#18 43.54 [resolver:install] Using default POM (ome:bioformats_package:9.0.0-SNAPSHOT)
#18 43.55 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/bioformats_package-9.0.0-SNAPSHOT.pom
#18 43.55 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/bioformats_package-9.0.0-SNAPSHOT.jar
#18 43.59 [resolver:install] Installing ome:bioformats_package:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/maven-metadata-local.xml
#18 43.59 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#18 43.60
#18 43.60 BUILD SUCCESSFUL
#18 43.60 Total time: 43 seconds
#18 DONE 44.3s
#19 [15/15] WORKDIR /bio-formats-build/bioformats/components/test-suite
#19 DONE 0.2s
#20 exporting to image
#20 exporting layers
#20 exporting layers 3.9s done
#20 writing image sha256:7b5c779bd2117e498a5b8580a72904a85ed84b24b61788fd247516fbb6098e79 0.0s done
#20 naming to docker.io/snoopycrimecop/bioformats:merge_ci 0.0s done
#20 DONE 4.0s
Finished: SUCCESS
