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#15 442.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.1.1/maven-model-builder-3.1.1.jar
#15 442.4 Progress (4): 1.8/3.2 MB | 42 kB | 42 kB | 45 kB
Progress (4): 1.8/3.2 MB | 42 kB | 42 kB | 45 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings-builder/3.1.1/maven-settings-builder-3.1.1.jar (42 kB at 295 kB/s)
#15 442.4 Progress (3): 1.8/3.2 MB | 42 kB | 45 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.1.1/maven-aether-provider-3.1.1.jar
#15 442.4 Progress (3): 1.8/3.2 MB | 42 kB | 45 kB
Progress (3): 1.8/3.2 MB | 42 kB | 45 kB
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Progress (3): 1.9/3.2 MB | 42 kB | 45 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/3.1.1/maven-settings-3.1.1.jar (42 kB at 286 kB/s)
#15 442.4 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar
#15 442.4 Progress (2): 1.9/3.2 MB | 45 kB
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Progress (3): 2.2/3.2 MB | 45 kB | 4.1/160 kB
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Progress (3): 2.2/3.2 MB | 45 kB | 28/160 kB
Progress (3): 2.2/3.2 MB | 45 kB | 28/160 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.1.1/maven-plugin-api-3.1.1.jar (45 kB at 270 kB/s)
#15 442.4 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar
#15 442.4 Progress (2): 2.2/3.2 MB | 32/160 kB
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Progress (5): 2.8/3.2 MB | 160 kB | 60 kB | 18 kB | 81/145 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.1.1/maven-model-builder-3.1.1.jar (160 kB at 790 kB/s)
#15 442.4 Progress (4): 2.8/3.2 MB | 60 kB | 18 kB | 85/145 kB
Progress (4): 2.8/3.2 MB | 60 kB | 18 kB | 85/145 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar
#15 442.4 Progress (4): 2.8/3.2 MB | 60 kB | 18 kB | 85/145 kB
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Progress (4): 2.8/3.2 MB | 60 kB | 18 kB | 98/145 kB
Progress (4): 2.8/3.2 MB | 60 kB | 18 kB | 102/145 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.1.1/maven-aether-provider-3.1.1.jar (60 kB at 294 kB/s)
#15 442.4 Progress (3): 2.8/3.2 MB | 18 kB | 106/145 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar
#15 442.4 Progress (3): 2.8/3.2 MB | 18 kB | 110/145 kB
Progress (3): 2.8/3.2 MB | 18 kB | 110/145 kB
Progress (3): 2.8/3.2 MB | 18 kB | 114/145 kB
Progress (3): 2.8/3.2 MB | 18 kB | 118/145 kB
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Progress (3): 3.0/3.2 MB | 18 kB | 145 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar (18 kB at 83 kB/s)
#15 442.5 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/10.0.1/guava-10.0.1.jar
#15 442.5 Progress (2): 3.0/3.2 MB | 145 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar (145 kB at 614 kB/s)
#15 442.5 Downloading from central: https://repo.maven.apache.org/maven2/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar
#15 442.5 Progress (2): 3.2 MB | 85/134 kB
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Progress (4): 3.2 MB | 134 kB | 197 kB | 0.1/1.5 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/7.0.0/biz.aQute.bndlib-7.0.0.jar (3.2 MB at 12 MB/s)
#15 442.5 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar
#15 442.5 Progress (3): 134 kB | 197 kB | 0.1/1.5 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar (134 kB at 507 kB/s)
#15 442.5 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar
#15 442.5 Progress (2): 197 kB | 0.1/1.5 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar (197 kB at 710 kB/s)
#15 442.5 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.26/plexus-interpolation-1.26.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar (33 kB at 110 kB/s)
#15 442.5 Progress (3): 0.7/1.5 MB | 50 kB | 167/291 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar (50 kB at 156 kB/s)
#15 442.6 Progress (3): 1.0/1.5 MB | 291 kB | 85 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.26/plexus-interpolation-1.26.jar (85 kB at 250 kB/s)
#15 442.6 Progress (2): 1.3/1.5 MB | 291 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar (291 kB at 830 kB/s)
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#15 442.8 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.7/nexus-staging-maven-plugin-1.6.7.pom
#15 442.8 Progress (1): 4.1 kB
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#15 442.8 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-staging/1.6.7/nexus-staging-1.6.7.pom
#15 442.9 Progress (1): 2.8 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-staging/1.6.7/nexus-staging-1.6.7.pom (2.8 kB at 37 kB/s)
#15 442.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-maven-plugins/1.6.7/nexus-maven-plugins-1.6.7.pom
#15 442.9 Progress (1): 4.1 kB
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#15 443.0 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-common/1.6.7/nexus-common-1.6.7.pom
#15 443.0 Progress (1): 2.2 kB
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#15 443.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.9.1-02/nexus-client-core-2.9.1-02.pom
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Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.9.1-02/nexus-client-core-2.9.1-02.pom (4.9 kB at 70 kB/s)
#15 443.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-components/2.9.1-02/nexus-components-2.9.1-02.pom
#15 443.2 Progress (1): 2.6 kB
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#15 443.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-oss/2.9.1-02/nexus-oss-2.9.1-02.pom
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#15 446.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-restlet1x-model/2.9.1-02/nexus-restlet1x-model-2.9.1-02.jar (160 kB at 2.5 MB/s)
#15 446.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.9.1-02/nexus-client-core-2.9.1-02.jar (211 kB at 2.8 MB/s)
#15 446.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.7/nexus-staging-maven-plugin-1.6.7.jar (250 kB at 2.8 MB/s)
#15 446.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.pom
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#15 446.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.jar
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#15 447.0 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.7.0/nexus-staging-maven-plugin-1.7.0.pom
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#15 447.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-staging/1.7.0/nexus-staging-1.7.0.pom
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#15 447.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-maven-plugins/1.7.0/nexus-maven-plugins-1.7.0.pom
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#15 447.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-common/1.7.0/nexus-common-1.7.0.pom
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#15 447.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.7.0/nexus-staging-maven-plugin-1.7.0.jar
#15 447.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-common/1.7.0/nexus-common-1.7.0.jar
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#15 447.4 [output clipped, log limit 2MiB reached]
#15 494.7 WARNING: A restricted method in java.lang.System has been called
#15 494.7 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 494.7 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 494.7 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 494.7
#15 541.8 SLF4J: No SLF4J providers were found.
#15 541.8 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 541.8 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 542.1 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 542.1 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 542.1 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 542.1 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 549.7s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.0s
#17 [13/14] RUN ant jars tools
#17 0.272 Buildfile: /bio-formats-build/bioformats/build.xml
#17 0.666 [echo] isSnapshot = true
#17 0.776
#17 0.776 copy-jars:
#17 0.776
#17 0.776 deps-formats-api:
#17 0.861 [echo] isSnapshot = true
#17 0.920
#17 0.920 install-pom:
#17 1.112 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/pom-bio-formats-8.6.0-SNAPSHOT.pom
#17 1.124 [resolver:install] Installing ome:pom-bio-formats:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 1.128 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 1.130
#17 1.130 jar-formats-api:
#17 1.240 [echo] isSnapshot = true
#17 1.406
#17 1.406 init-title:
#17 1.406 [echo] ----------=========== formats-api ===========----------
#17 1.406
#17 1.406 init-timestamp:
#17 1.415
#17 1.415 init:
#17 1.415
#17 1.415 copy-resources:
#17 1.416 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.431 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.433
#17 1.433 compile:
#17 1.618 [resolver:resolve] Resolving artifacts
#17 1.646 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.858 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 1.858 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 1.858 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 1.858 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 1.858 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 1.858 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 2.559 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 2.559 [javac] import loci.common.ReflectedUniverse;
#17 2.559 [javac] ^
#17 2.860 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 2.860 [javac] int currentIndex = r.getCoreIndex();
#17 2.860 [javac] ^
#17 2.860 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 2.860 [javac] r.setCoreIndex(coreIndex);
#17 2.860 [javac] ^
#17 2.860 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 2.860 [javac] r.setCoreIndex(currentIndex);
#17 2.860 [javac] ^
#17 2.960 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 2.960 [javac] public void setCoreIndex(int no) {
#17 2.960 [javac] ^
#17 2.960 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 2.960 [javac] public int getCoreIndex() {
#17 2.960 [javac] ^
#17 2.960 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 2.960 [javac] public int coreIndexToSeries(int index)
#17 2.961 [javac] ^
#17 2.961 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 2.961 [javac] public int seriesToCoreIndex(int series)
#17 2.961 [javac] ^
#17 2.961 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 2.961 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 2.961 [javac] ^
#17 3.061 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.061 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 3.061 [javac] ^
#17 3.061 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.061 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 3.061 [javac] ^
#17 3.061 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.061 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 3.061 [javac] ^
#17 3.062 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.062 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 3.062 [javac] ^
#17 3.162 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 3.162 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 3.162 [javac] ^
#17 3.162 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.162 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.162 [javac] ^
#17 3.162 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.162 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.162 [javac] ^
#17 3.263 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.263 [javac] public void setCoreIndex(int no) {
#17 3.263 [javac] ^
#17 3.263 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.263 [javac] public int getCoreIndex() {
#17 3.263 [javac] ^
#17 3.263 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.263 [javac] public int coreIndexToSeries(int index) {
#17 3.263 [javac] ^
#17 3.263 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.263 [javac] public int seriesToCoreIndex(int series) {
#17 3.263 [javac] ^
#17 3.263 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.263 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.264 [javac] ^
#17 3.264 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.264 [javac] return getReader().getCoreMetadataList();
#17 3.264 [javac] ^
#17 3.264 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.264 [javac] return getReader().getCoreIndex();
#17 3.264 [javac] ^
#17 3.264 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.264 [javac] getReader().setCoreIndex(no);
#17 3.264 [javac] ^
#17 3.264 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.264 [javac] return getReader().seriesToCoreIndex(series);
#17 3.264 [javac] ^
#17 3.264 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.264 [javac] return getReader().coreIndexToSeries(index);
#17 3.264 [javac] ^
#17 3.364 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.364 [javac] public void setCoreIndex(int no) {
#17 3.365 [javac] ^
#17 3.365 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.365 [javac] public int getCoreIndex() {
#17 3.365 [javac] ^
#17 3.365 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.365 [javac] public int coreIndexToSeries(int index) {
#17 3.365 [javac] ^
#17 3.365 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.365 [javac] public int seriesToCoreIndex(int series) {
#17 3.365 [javac] ^
#17 3.365 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.365 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.365 [javac] ^
#17 3.365 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.365 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 3.365 [javac] ^
#17 3.365 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.365 [javac] return reader.getCoreIndex();
#17 3.365 [javac] ^
#17 3.365 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.365 [javac] reader.setCoreIndex(no);
#17 3.365 [javac] ^
#17 3.365 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.365 [javac] return reader.seriesToCoreIndex(series);
#17 3.365 [javac] ^
#17 3.365 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.366 [javac] return reader.coreIndexToSeries(index);
#17 3.366 [javac] ^
#17 3.466 [javac] Note: Some input files use unchecked or unsafe operations.
#17 3.466 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 3.466 [javac] 40 warnings
#17 3.506
#17 3.506 formats-api.jar:
#17 3.506 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 3.533 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 3.569 [resolver:install] Using default POM (ome:formats-api:8.6.0-SNAPSHOT)
#17 3.572 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.pom
#17 3.628 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar
#17 3.630 [resolver:install] Installing ome:formats-api:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 3.632 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 3.633
#17 3.633 deps-turbojpeg:
#17 3.633
#17 3.633 jar-turbojpeg:
#17 3.731 [echo] isSnapshot = true
#17 3.874
#17 3.874 init-title:
#17 3.874 [echo] ----------=========== turbojpeg ===========----------
#17 3.874
#17 3.874 init-timestamp:
#17 3.874
#17 3.874 init:
#17 3.874
#17 3.874 copy-resources:
#17 3.875 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 3.876
#17 3.876 compile:
#17 3.885 [resolver:resolve] Resolving artifacts
#17 3.888 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.091 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 4.091 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 4.091 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 4.091 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 4.091 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 4.091 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 4.849 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.849 [javac] protected void finalize() throws Throwable {
#17 4.850 [javac] ^
#17 4.850 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.850 [javac] super.finalize();
#17 4.850 [javac] ^
#17 4.850 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.850 [javac] protected void finalize() throws Throwable {
#17 4.850 [javac] ^
#17 4.850 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.850 [javac] super.finalize();
#17 4.850 [javac] ^
#17 4.850 [javac] 8 warnings
#17 4.850
#17 4.850 jar:
#17 4.854 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 5.038 [resolver:install] Using default POM (ome:turbojpeg:8.6.0-SNAPSHOT)
#17 5.045 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.pom
#17 5.047 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar
#17 5.049 [resolver:install] Installing ome:turbojpeg:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 5.052 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 5.054
#17 5.054 deps-formats-bsd:
#17 5.054
#17 5.054 jar-formats-bsd:
#17 5.182 [echo] isSnapshot = true
#17 5.328
#17 5.328 init-title:
#17 5.328 [echo] ----------=========== formats-bsd ===========----------
#17 5.328
#17 5.328 init-timestamp:
#17 5.328
#17 5.328 init:
#17 5.328
#17 5.328 copy-resources:
#17 5.329 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.332 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.332
#17 5.332 compile:
#17 5.562 [resolver:resolve] Resolving artifacts
#17 5.587 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.796 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 5.796 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 5.796 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 5.796 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 5.796 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 5.896 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 6.997 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 6.997 [javac] import loci.common.ReflectedUniverse;
#17 6.997 [javac] ^
#17 7.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.498 [javac] core.size() != reader.getCoreMetadataList().size())
#17 7.498 [javac] ^
#17 7.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.498 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 7.498 [javac] ^
#17 7.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.498 [javac] int n = reader.getCoreMetadataList().size();
#17 7.498 [javac] ^
#17 7.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.498 [javac] reader.setCoreIndex(coreIndex);
#17 7.498 [javac] ^
#17 7.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.498 [javac] int n = reader.getCoreMetadataList().size();
#17 7.498 [javac] ^
#17 7.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.498 [javac] int n = reader.getCoreMetadataList().size();
#17 7.498 [javac] ^
#17 7.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 7.498 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 7.498 [javac] ^
#17 7.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.498 [javac] int n = reader.getCoreMetadataList().size();
#17 7.498 [javac] ^
#17 7.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 7.498 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 7.498 [javac] ^
#17 7.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.498 [javac] int n = reader.getCoreMetadataList().size();
#17 7.498 [javac] ^
#17 7.498 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.498 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 7.499 [javac] ^
#17 7.499 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.499 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.499 [javac] ^
#17 7.499 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.499 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.499 [javac] ^
#17 7.499 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.499 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 7.499 [javac] ^
#17 7.499 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.499 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 7.499 [javac] ^
#17 7.499 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.499 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 7.499 [javac] ^
#17 7.599 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.599 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 7.599 [javac] ^
#17 7.599 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.599 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 7.599 [javac] ^
#17 7.599 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.599 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 7.599 [javac] ^
#17 7.700 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.700 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 7.700 [javac] ^
#17 7.700 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 7.700 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 7.700 [javac] ^
#17 7.700 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 7.700 [javac] URL url = new URL(urlPath);
#17 7.700 [javac] ^
#17 7.800 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 7.800 [javac] BitWriter out = new BitWriter();
#17 7.800 [javac] ^
#17 7.800 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 7.800 [javac] BitWriter out = new BitWriter();
#17 7.800 [javac] ^
#17 8.001 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.001 [javac] return new Double(v);
#17 8.001 [javac] ^
#17 8.501 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.501 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 8.501 [javac] ^
#17 8.501 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.501 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 8.502 [javac] ^
#17 8.502 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 8.502 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 8.502 [javac] ^
#17 8.702 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 8.702 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 8.702 [javac] ^
#17 8.802 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.802 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 8.802 [javac] ^
#17 8.902 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 8.902 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 8.902 [javac] ^
#17 9.003 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.003 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 9.003 [javac] ^
#17 9.003 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.003 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 9.003 [javac] ^
#17 9.003 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.003 [javac] protected ReflectedUniverse r;
#17 9.003 [javac] ^
#17 9.003 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.003 [javac] r = new ReflectedUniverse();
#17 9.003 [javac] ^
#17 9.103 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1044: warning: [deprecation] NM in UNITS has been deprecated
#17 9.103 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 9.103 [javac] ^
#17 9.103 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1076: warning: [deprecation] MM in UNITS has been deprecated
#17 9.103 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 9.103 [javac] ^
#17 9.103 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 9.103 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 9.103 [javac] ^
#17 9.103 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1091: warning: [deprecation] MM in UNITS has been deprecated
#17 9.103 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 9.103 [javac] ^
#17 9.103 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#17 9.103 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 9.103 [javac] ^
#17 9.103 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1116: warning: [deprecation] MM in UNITS has been deprecated
#17 9.104 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 9.104 [javac] ^
#17 9.104 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1122: warning: [deprecation] MM in UNITS has been deprecated
#17 9.104 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 9.104 [javac] ^
#17 9.104 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#17 9.104 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 9.104 [javac] ^
#17 9.104 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1175: warning: [deprecation] MM in UNITS has been deprecated
#17 9.104 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 9.104 [javac] ^
#17 9.204 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.204 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.204 [javac] ^
#17 9.204 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.204 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.204 [javac] ^
#17 9.204 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.204 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.204 [javac] ^
#17 9.204 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.204 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.204 [javac] ^
#17 9.204 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 9.204 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 9.204 [javac] ^
#17 9.204 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:324: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.204 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 9.204 [javac] ^
#17 9.204 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:346: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.204 [javac] result[i] = new Double(readNumber().doubleValue());
#17 9.204 [javac] ^
#17 9.266 [javac] Note: Some input files use unchecked or unsafe operations.
#17 9.266 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 9.266 [javac] 56 warnings
#17 9.266
#17 9.266 formats-bsd.jar:
#17 9.277 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 9.404 [resolver:install] Using default POM (ome:formats-bsd:8.6.0-SNAPSHOT)
#17 9.407 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.pom
#17 9.410 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar
#17 9.411 [resolver:install] Installing ome:formats-bsd:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 9.413 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 9.414
#17 9.414 deps-formats-gpl:
#17 9.414
#17 9.414 jar-formats-gpl:
#17 9.508 [echo] isSnapshot = true
#17 9.644
#17 9.644 init-title:
#17 9.645 [echo] ----------=========== formats-gpl ===========----------
#17 9.645
#17 9.645 init-timestamp:
#17 9.645
#17 9.645 init:
#17 9.645
#17 9.645 copy-resources:
#17 9.646 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 9.647 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 9.648
#17 9.648 compile:
#17 9.998 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 10.50 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 10.88 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#17 10.89 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 11.06 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 11.18 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#17 11.23 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 11.43 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 11.55 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#17 11.59 [resolver:resolve] Resolving artifacts
#17 11.60 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 11.60 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 11.84 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 11.84 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 12.19 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#17 12.19 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#17 12.21 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 12.41 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 12.41 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 12.41 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 12.41 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 12.41 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 12.41 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 13.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 13.62 [javac] import loci.formats.codec.BitWriter;
#17 13.62 [javac] ^
#17 13.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 13.72 [javac] import loci.formats.codec.BitWriter;
#17 13.72 [javac] ^
#17 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 15.62 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 15.62 [javac] ^
#17 15.62 [javac] cast to Object for a varargs call
#17 15.62 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 15.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.72 [javac] BitWriter bits = null;
#17 15.72 [javac] ^
#17 15.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.72 [javac] bits = new BitWriter(planes[index].length / 8);
#17 15.72 [javac] ^
#17 16.02 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 16.02 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 16.02 [javac] ^
#17 16.42 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 16.42 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 16.42 [javac] ^
#17 16.42 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 16.42 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 16.42 [javac] ^
#17 16.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.52 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.52 [javac] ^
#17 16.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.52 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.52 [javac] ^
#17 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:173: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 16.77 [javac] Variable variable = group.findVariable(variableName);
#17 16.77 [javac] ^
#17 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 16.77 [javac] Variable variable = group.findVariable(variableName);
#17 16.77 [javac] ^
#17 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:203: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 16.77 [javac] List<Attribute> attributes = variable.getAttributes();
#17 16.77 [javac] ^
#17 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:245: warning: [deprecation] getName() in CDMNode has been deprecated
#17 16.77 [javac] String groupName = group.getName();
#17 16.77 [javac] ^
#17 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getAttributes() in Group has been deprecated
#17 16.77 [javac] List<Attribute> attributes = group.getAttributes();
#17 16.77 [javac] ^
#17 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:254: warning: [deprecation] getName() in CDMNode has been deprecated
#17 16.77 [javac] String variableName = variable.getName();
#17 16.77 [javac] ^
#17 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:277: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 16.77 [javac] Group nextParent = parent.findGroup(token);
#17 16.77 [javac] ^
#17 16.77 [javac] Note: Some input files use unchecked or unsafe operations.
#17 16.77 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 16.77 [javac] 21 warnings
#17 16.77
#17 16.77 formats-gpl.jar:
#17 16.78 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 16.92 [resolver:install] Using default POM (ome:formats-gpl:8.6.0-SNAPSHOT)
#17 16.93 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.pom
#17 16.93 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar
#17 16.93 [resolver:install] Installing ome:formats-gpl:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 16.93 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 16.93
#17 16.93 deps-bio-formats-plugins:
#17 16.93
#17 16.93 jar-bio-formats-plugins:
#17 17.03 [echo] isSnapshot = true
#17 17.17
#17 17.17 init-title:
#17 17.17 [echo] ----------=========== bio-formats_plugins ===========----------
#17 17.17
#17 17.17 init-timestamp:
#17 17.17
#17 17.17 init:
#17 17.17
#17 17.17 copy-resources:
#17 17.17 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.18 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.18
#17 17.18 compile:
#17 17.43 [resolver:resolve] Resolving artifacts
#17 17.44 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.75 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 17.75 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 17.75 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 17.75 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 17.75 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 17.75 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 18.55 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.55 [javac] import loci.common.ReflectedUniverse;
#17 18.55 [javac] ^
#17 18.55 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.55 [javac] import loci.common.ReflectedUniverse;
#17 18.55 [javac] ^
#17 19.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 19.05 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 19.05 [javac] ^
#17 19.15 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 19.15 [javac] URL url = new URL(urlPath);
#17 19.15 [javac] ^
#17 19.15 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.15 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.15 [javac] ^
#17 19.15 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.15 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.15 [javac] ^
#17 19.35 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.35 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.35 [javac] ^
#17 19.35 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.35 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.35 [javac] ^
#17 19.55 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 19.55 [javac] url = new URL(path);
#17 19.55 [javac] ^
#17 19.75 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 19.75 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 19.75 [javac] 13 warnings
#17 19.78
#17 19.78 bio-formats-plugins.jar:
#17 19.78 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 19.81 [resolver:install] Using default POM (ome:bio-formats_plugins:8.6.0-SNAPSHOT)
#17 19.81 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.pom
#17 19.82 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar
#17 19.82 [resolver:install] Installing ome:bio-formats_plugins:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 19.82 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 19.82
#17 19.82 deps-bio-formats-tools:
#17 19.82
#17 19.82 jar-bio-formats-tools:
#17 19.91 [echo] isSnapshot = true
#17 20.06
#17 20.06 init-title:
#17 20.06 [echo] ----------=========== bio-formats-tools ===========----------
#17 20.06
#17 20.06 init-timestamp:
#17 20.06
#17 20.06 init:
#17 20.06
#17 20.06 copy-resources:
#17 20.06 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 20.06
#17 20.06 compile:
#17 20.31 [resolver:resolve] Resolving artifacts
#17 20.32 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 20.53 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 20.53 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 20.53 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 20.53 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 20.53 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 20.53 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 21.73 [javac] 4 warnings
#17 21.74
#17 21.74 bio-formats-tools.jar:
#17 21.74 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 21.75 [resolver:install] Using default POM (ome:bio-formats-tools:8.6.0-SNAPSHOT)
#17 21.76 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.pom
#17 21.76 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar
#17 21.76 [resolver:install] Installing ome:bio-formats-tools:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 21.76 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 21.76
#17 21.76 deps-tests:
#17 21.76
#17 21.76 jar-tests:
#17 21.86 [echo] isSnapshot = true
#17 21.99
#17 21.99 init-title:
#17 21.99 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 21.99
#17 21.99 init-timestamp:
#17 21.99
#17 21.99 init:
#17 21.99
#17 21.99 copy-resources:
#17 21.99 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 21.99
#17 21.99 compile:
#17 22.31 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.41 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.76 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.78 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.33 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.77 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 23.78 [resolver:resolve] Resolving artifacts
#17 23.79 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 23.86 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.21 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.22 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.76 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.14 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 25.14 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 25.45 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 25.45 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 25.45 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 25.45 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 25.45 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 25.45 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 26.45 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.45 [javac] int index = unflattenedReader.getCoreIndex();
#17 26.45 [javac] ^
#17 26.45 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 26.45 [javac] reader.setCoreIndex(index);
#17 26.45 [javac] ^
#17 26.75 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.75 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 26.75 [javac] ^
#17 26.75 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.75 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 26.75 [javac] ^
#17 27.05 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.05 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 27.05 [javac] ^
#17 27.05 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.05 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 27.05 [javac] ^
#17 27.05 [javac] Note: Some input files use unchecked or unsafe operations.
#17 27.05 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 27.05 [javac] 10 warnings
#17 27.05
#17 27.05 tests.jar:
#17 27.05 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 27.06 [resolver:install] Using default POM (ome:test-suite:8.6.0-SNAPSHOT)
#17 27.07 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.pom
#17 27.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.jar
#17 27.07 [resolver:install] Installing ome:test-suite:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 27.07 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 27.07
#17 27.07 jars:
#17 27.07
#17 27.07 copy-jars:
#17 27.07
#17 27.07 deps-formats-api:
#17 27.12 [echo] isSnapshot = true
#17 27.16
#17 27.16 install-pom:
#17 27.28 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/pom-bio-formats-8.6.0-SNAPSHOT.pom
#17 27.28 [resolver:install] Installing ome:pom-bio-formats:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 27.29 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 27.29
#17 27.29 jar-formats-api:
#17 27.38 [echo] isSnapshot = true
#17 27.51
#17 27.51 init-title:
#17 27.51 [echo] ----------=========== formats-api ===========----------
#17 27.51
#17 27.51 init-timestamp:
#17 27.51
#17 27.51 init:
#17 27.51
#17 27.51 copy-resources:
#17 27.51
#17 27.51 compile:
#17 27.67 [resolver:resolve] Resolving artifacts
#17 27.68
#17 27.68 formats-api.jar:
#17 27.70 [resolver:install] Using default POM (ome:formats-api:8.6.0-SNAPSHOT)
#17 27.70 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.pom
#17 27.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar
#17 27.70 [resolver:install] Installing ome:formats-api:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 27.70 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 27.70
#17 27.70 deps-turbojpeg:
#17 27.70
#17 27.70 jar-turbojpeg:
#17 27.79 [echo] isSnapshot = true
#17 27.91
#17 27.91 init-title:
#17 27.91 [echo] ----------=========== turbojpeg ===========----------
#17 27.91
#17 27.91 init-timestamp:
#17 27.91
#17 27.91 init:
#17 27.91
#17 27.91 copy-resources:
#17 27.91
#17 27.91 compile:
#17 27.92 [resolver:resolve] Resolving artifacts
#17 27.92
#17 27.92 jar:
#17 27.93 [resolver:install] Using default POM (ome:turbojpeg:8.6.0-SNAPSHOT)
#17 27.93 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.pom
#17 27.94 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar
#17 27.94 [resolver:install] Installing ome:turbojpeg:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 27.94 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 27.94
#17 27.94 deps-formats-bsd:
#17 27.94
#17 27.94 jar-formats-bsd:
#17 28.02 [echo] isSnapshot = true
#17 28.15
#17 28.15 init-title:
#17 28.15 [echo] ----------=========== formats-bsd ===========----------
#17 28.15
#17 28.15 init-timestamp:
#17 28.15
#17 28.15 init:
#17 28.15
#17 28.15 copy-resources:
#17 28.15
#17 28.15 compile:
#17 28.34 [resolver:resolve] Resolving artifacts
#17 28.36
#17 28.36 formats-bsd.jar:
#17 28.39 [resolver:install] Using default POM (ome:formats-bsd:8.6.0-SNAPSHOT)
#17 28.39 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.pom
#17 28.39 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar
#17 28.39 [resolver:install] Installing ome:formats-bsd:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 28.40 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 28.40
#17 28.40 deps-formats-gpl:
#17 28.40
#17 28.40 jar-formats-gpl:
#17 28.48 [echo] isSnapshot = true
#17 28.60
#17 28.60 init-title:
#17 28.60 [echo] ----------=========== formats-gpl ===========----------
#17 28.60
#17 28.60 init-timestamp:
#17 28.60
#17 28.60 init:
#17 28.60
#17 28.60 copy-resources:
#17 28.60
#17 28.60 compile:
#17 28.84 [resolver:resolve] Resolving artifacts
#17 28.86
#17 28.86 formats-gpl.jar:
#17 28.89 [resolver:install] Using default POM (ome:formats-gpl:8.6.0-SNAPSHOT)
#17 28.89 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.pom
#17 28.89 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar
#17 28.89 [resolver:install] Installing ome:formats-gpl:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 28.89 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 28.89
#17 28.89 deps-bio-formats-plugins:
#17 28.89
#17 28.89 jar-bio-formats-plugins:
#17 28.97 [echo] isSnapshot = true
#17 29.10
#17 29.10 init-title:
#17 29.10 [echo] ----------=========== bio-formats_plugins ===========----------
#17 29.10
#17 29.10 init-timestamp:
#17 29.10
#17 29.10 init:
#17 29.10
#17 29.10 copy-resources:
#17 29.10
#17 29.10 compile:
#17 29.33 [resolver:resolve] Resolving artifacts
#17 29.35
#17 29.35 bio-formats-plugins.jar:
#17 29.36 [resolver:install] Using default POM (ome:bio-formats_plugins:8.6.0-SNAPSHOT)
#17 29.36 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.pom
#17 29.36 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar
#17 29.36 [resolver:install] Installing ome:bio-formats_plugins:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 29.36 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 29.37
#17 29.37 deps-bio-formats-tools:
#17 29.37
#17 29.37 jar-bio-formats-tools:
#17 29.45 [echo] isSnapshot = true
#17 29.58
#17 29.58 init-title:
#17 29.58 [echo] ----------=========== bio-formats-tools ===========----------
#17 29.58
#17 29.58 init-timestamp:
#17 29.58
#17 29.58 init:
#17 29.58
#17 29.58 copy-resources:
#17 29.58
#17 29.58 compile:
#17 29.80 [resolver:resolve] Resolving artifacts
#17 29.81
#17 29.81 bio-formats-tools.jar:
#17 29.82 [resolver:install] Using default POM (ome:bio-formats-tools:8.6.0-SNAPSHOT)
#17 29.82 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.pom
#17 29.82 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar
#17 29.82 [resolver:install] Installing ome:bio-formats-tools:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 29.82 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 29.82
#17 29.82 deps-tests:
#17 29.82
#17 29.82 jar-tests:
#17 29.90 [echo] isSnapshot = true
#17 30.04
#17 30.04 init-title:
#17 30.04 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 30.04
#17 30.04 init-timestamp:
#17 30.04
#17 30.04 init:
#17 30.04
#17 30.04 copy-resources:
#17 30.04
#17 30.04 compile:
#17 30.28 [resolver:resolve] Resolving artifacts
#17 30.29
#17 30.29 tests.jar:
#17 30.29 [resolver:install] Using default POM (ome:test-suite:8.6.0-SNAPSHOT)
#17 30.30 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.pom
#17 30.30 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.jar
#17 30.30 [resolver:install] Installing ome:test-suite:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 30.30 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 30.30
#17 30.30 jars:
#17 30.30
#17 30.30 tools:
#17 30.30 [echo] ----------=========== bioformats_package ===========----------
#17 30.38 [echo] isSnapshot = true
#17 30.51
#17 30.51 init-timestamp:
#17 30.51
#17 30.51 bundle:
#17 30.75 [resolver:resolve] Resolving artifacts
#17 30.76 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.79 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.2.2-SNAPSHOT/ome-common-6.2.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.81 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.83 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.84 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.89 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.91 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.96 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.97 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.17 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.21 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.23 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.28 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.29 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.30 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.30 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.45 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.89 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.89 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.89 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.90 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.97 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.98 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.98 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.4-SNAPSHOT/ome-xml-6.5.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.04 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.4-SNAPSHOT/specification-6.5.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.09 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.10 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.4-SNAPSHOT/ome-codecs-1.1.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.11 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.24 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/2.0.3/aircompressor-2.0.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.26 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.33 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.37 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.37 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.46 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.48 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.89 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.91 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.93 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.03 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.04 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.06 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.07 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.27 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.33 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.38 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.47 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.49 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.49 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.60 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.61 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.03 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.04 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.15 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.20 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.20 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.21 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.27 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.60 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.61 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.62 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.63 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.63 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.66 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.02 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.16/logback-core-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.11 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.16/logback-classic-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.51 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 42.25 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 42.78 [resolver:install] Using default POM (ome:bioformats_package:8.6.0-SNAPSHOT)
#17 42.79 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/bioformats_package-8.6.0-SNAPSHOT.pom
#17 42.79 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/bioformats_package-8.6.0-SNAPSHOT.jar
#17 42.83 [resolver:install] Installing ome:bioformats_package:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 42.83 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 42.84
#17 42.84 BUILD SUCCESSFUL
#17 42.84 Total time: 42 seconds
#17 DONE 43.0s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.3s
#19 exporting to image
#19 exporting layers
#19 exporting layers 3.3s done
#19 writing image sha256:5c465a3634f293494ba21ad9d0a8d301dcd0410c2afd0b6ae0de866b7df6319b done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 3.3s
Finished: SUCCESS
