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#15 433.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/3.1.1/maven-repository-metadata-3.1.1.jar
#15 433.3 Progress (3): 1.0/3.2 MB | 442 kB | 42 kB
Downloaded from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bnd.util/7.0.0/biz.aQute.bnd.util-7.0.0.jar (442 kB at 4.6 MB/s)
#15 433.3 Progress (2): 1.0/3.2 MB | 42 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.1.1/maven-plugin-api-3.1.1.jar
#15 433.3 Progress (2): 1.0/3.2 MB | 42 kB
Progress (2): 1.1/3.2 MB | 42 kB
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Progress (3): 1.1/3.2 MB | 42 kB | 4.1/42 kB
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Progress (3): 1.3/3.2 MB | 42 kB | 42 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/3.1.1/maven-settings-3.1.1.jar (42 kB at 366 kB/s)
#15 433.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.1.1/maven-model-builder-3.1.1.jar
#15 433.3 Progress (2): 1.4/3.2 MB | 42 kB
Progress (2): 1.4/3.2 MB | 42 kB
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Progress (2): 1.5/3.2 MB | 42 kB
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Progress (3): 1.5/3.2 MB | 42 kB | 4.1/25 kB
Progress (3): 1.5/3.2 MB | 42 kB | 7.7/25 kB
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Progress (4): 1.6/3.2 MB | 42 kB | 25 kB | 12/45 kB
Progress (4): 1.6/3.2 MB | 42 kB | 25 kB | 12/45 kB
Progress (4): 1.6/3.2 MB | 42 kB | 25 kB | 16/45 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings-builder/3.1.1/maven-settings-builder-3.1.1.jar (42 kB at 317 kB/s)
#15 433.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.1.1/maven-aether-provider-3.1.1.jar
#15 433.3 Progress (3): 1.6/3.2 MB | 25 kB | 20/45 kB
Progress (3): 1.6/3.2 MB | 25 kB | 24/45 kB
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Progress (4): 1.9/3.2 MB | 25 kB | 45 kB | 160 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/3.1.1/maven-repository-metadata-3.1.1.jar (25 kB at 166 kB/s)
#15 433.3 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar
#15 433.3 Progress (3): 2.0/3.2 MB | 45 kB | 160 kB
Progress (3): 2.0/3.2 MB | 45 kB | 160 kB
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Progress (3): 2.1/3.2 MB | 45 kB | 160 kB
Progress (4): 2.1/3.2 MB | 45 kB | 160 kB | 4.1/60 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.1.1/maven-plugin-api-3.1.1.jar (45 kB at 274 kB/s)
#15 433.4 Progress (3): 2.1/3.2 MB | 160 kB | 45/60 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar
#15 433.4 Progress (3): 2.1/3.2 MB | 160 kB | 49/60 kB
Progress (3): 2.1/3.2 MB | 160 kB | 53/60 kB
Progress (3): 2.1/3.2 MB | 160 kB | 57/60 kB
Progress (3): 2.1/3.2 MB | 160 kB | 60 kB
Progress (3): 2.1/3.2 MB | 160 kB | 60 kB
Progress (3): 2.2/3.2 MB | 160 kB | 60 kB
Progress (3): 2.2/3.2 MB | 160 kB | 60 kB
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Progress (3): 2.3/3.2 MB | 160 kB | 60 kB
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Progress (3): 2.4/3.2 MB | 160 kB | 60 kB
Progress (3): 2.4/3.2 MB | 160 kB | 60 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.1.1/maven-model-builder-3.1.1.jar (160 kB at 882 kB/s)
#15 433.4 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar
#15 433.4 Progress (2): 2.4/3.2 MB | 60 kB
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Progress (3): 2.4/3.2 MB | 60 kB | 4.1/18 kB
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Progress (3): 2.6/3.2 MB | 60 kB | 18 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.1.1/maven-aether-provider-3.1.1.jar (60 kB at 310 kB/s)
#15 433.4 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar
#15 433.4 Progress (2): 2.6/3.2 MB | 18 kB
Progress (2): 2.6/3.2 MB | 18 kB
Progress (3): 2.6/3.2 MB | 18 kB | 4.1/145 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar (18 kB at 84 kB/s)
#15 433.4 Progress (3): 2.9/3.2 MB | 145 kB | 28/134 kB
Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/10.0.1/guava-10.0.1.jar
#15 433.4 Progress (3): 2.9/3.2 MB | 145 kB | 32/134 kB
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#15 433.4 Downloading from central: https://repo.maven.apache.org/maven2/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar
#15 433.4 Progress (4): 3.2 MB | 134 kB | 197 kB | 0/1.5 MB
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#15 433.4 Progress (3): 3.2 MB | 197 kB | 0.1/1.5 MB
Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar
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#15 433.5 Progress (2): 197 kB | 0.3/1.5 MB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar
#15 433.5 Progress (2): 197 kB | 0.4/1.5 MB
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#15 433.5 Progress (1): 0.4/1.5 MB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.26/plexus-interpolation-1.26.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar (33 kB at 109 kB/s)
#15 433.5 Progress (4): 1.0/1.5 MB | 291 kB | 50 kB | 85 kB
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#15 437.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-restlet1x-model/2.9.1-02/nexus-restlet1x-model-2.9.1-02.jar (160 kB at 2.4 MB/s)
#15 437.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.7/nexus-staging-maven-plugin-1.6.7.jar (250 kB at 3.2 MB/s)
#15 437.2 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.9.1-02/nexus-client-core-2.9.1-02.jar (211 kB at 2.1 MB/s)
#15 437.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.pom
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#15 437.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.jar
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#15 437.5 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.7.0/nexus-staging-maven-plugin-1.7.0.pom
#15 437.6 Progress (1): 4.1 kB
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#15 437.6 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-staging/1.7.0/nexus-staging-1.7.0.pom
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#15 437.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-maven-plugins/1.7.0/nexus-maven-plugins-1.7.0.pom
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#15 437.7 [output clipped, log limit 2MiB reached]
#15 486.0 WARNING: A restricted method in java.lang.System has been called
#15 486.0 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 486.0 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 486.0 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 486.0
#15 531.4 SLF4J: No SLF4J providers were found.
#15 531.4 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 531.4 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 531.6 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 531.6 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 531.6 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 531.6 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 541.1s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.1s
#17 [13/14] RUN ant jars tools
#17 0.265 Buildfile: /bio-formats-build/bioformats/build.xml
#17 0.656 [echo] isSnapshot = true
#17 0.765
#17 0.765 copy-jars:
#17 0.765
#17 0.765 deps-formats-api:
#17 0.852 [echo] isSnapshot = true
#17 0.906
#17 0.906 install-pom:
#17 1.093 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/pom-bio-formats-8.6.0-SNAPSHOT.pom
#17 1.105 [resolver:install] Installing ome:pom-bio-formats:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 1.109 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 1.110
#17 1.110 jar-formats-api:
#17 1.224 [echo] isSnapshot = true
#17 1.387
#17 1.387 init-title:
#17 1.388 [echo] ----------=========== formats-api ===========----------
#17 1.388
#17 1.388 init-timestamp:
#17 1.396
#17 1.396 init:
#17 1.396
#17 1.396 copy-resources:
#17 1.397 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.411 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.413
#17 1.413 compile:
#17 1.597 [resolver:resolve] Resolving artifacts
#17 1.624 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.836 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 1.837 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 1.837 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 1.837 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 1.837 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 1.837 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 2.538 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 2.538 [javac] import loci.common.ReflectedUniverse;
#17 2.538 [javac] ^
#17 2.838 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 2.838 [javac] int currentIndex = r.getCoreIndex();
#17 2.838 [javac] ^
#17 2.838 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 2.838 [javac] r.setCoreIndex(coreIndex);
#17 2.838 [javac] ^
#17 2.838 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 2.839 [javac] r.setCoreIndex(currentIndex);
#17 2.839 [javac] ^
#17 2.939 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 2.939 [javac] public void setCoreIndex(int no) {
#17 2.939 [javac] ^
#17 2.939 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 2.939 [javac] public int getCoreIndex() {
#17 2.939 [javac] ^
#17 2.939 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 2.939 [javac] public int coreIndexToSeries(int index)
#17 2.939 [javac] ^
#17 2.939 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 2.939 [javac] public int seriesToCoreIndex(int series)
#17 2.939 [javac] ^
#17 2.940 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 2.940 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 2.940 [javac] ^
#17 3.040 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.040 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 3.040 [javac] ^
#17 3.040 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.040 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 3.040 [javac] ^
#17 3.040 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.040 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 3.040 [javac] ^
#17 3.040 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.041 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 3.041 [javac] ^
#17 3.141 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 3.141 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 3.141 [javac] ^
#17 3.141 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.141 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.141 [javac] ^
#17 3.141 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.141 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.142 [javac] ^
#17 3.242 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.242 [javac] public void setCoreIndex(int no) {
#17 3.242 [javac] ^
#17 3.242 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.242 [javac] public int getCoreIndex() {
#17 3.242 [javac] ^
#17 3.242 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.242 [javac] public int coreIndexToSeries(int index) {
#17 3.243 [javac] ^
#17 3.243 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.243 [javac] public int seriesToCoreIndex(int series) {
#17 3.243 [javac] ^
#17 3.243 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.243 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.243 [javac] ^
#17 3.243 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.243 [javac] return getReader().getCoreMetadataList();
#17 3.243 [javac] ^
#17 3.243 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.243 [javac] return getReader().getCoreIndex();
#17 3.243 [javac] ^
#17 3.243 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.243 [javac] getReader().setCoreIndex(no);
#17 3.243 [javac] ^
#17 3.243 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.243 [javac] return getReader().seriesToCoreIndex(series);
#17 3.243 [javac] ^
#17 3.243 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.243 [javac] return getReader().coreIndexToSeries(index);
#17 3.243 [javac] ^
#17 3.344 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.344 [javac] public void setCoreIndex(int no) {
#17 3.344 [javac] ^
#17 3.344 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.344 [javac] public int getCoreIndex() {
#17 3.344 [javac] ^
#17 3.344 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.344 [javac] public int coreIndexToSeries(int index) {
#17 3.344 [javac] ^
#17 3.344 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.344 [javac] public int seriesToCoreIndex(int series) {
#17 3.344 [javac] ^
#17 3.344 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.344 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.344 [javac] ^
#17 3.344 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.344 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 3.344 [javac] ^
#17 3.344 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.344 [javac] return reader.getCoreIndex();
#17 3.344 [javac] ^
#17 3.344 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.344 [javac] reader.setCoreIndex(no);
#17 3.345 [javac] ^
#17 3.345 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.345 [javac] return reader.seriesToCoreIndex(series);
#17 3.345 [javac] ^
#17 3.345 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.345 [javac] return reader.coreIndexToSeries(index);
#17 3.345 [javac] ^
#17 3.499 [javac] Note: Some input files use unchecked or unsafe operations.
#17 3.499 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 3.499 [javac] 40 warnings
#17 3.499
#17 3.499 formats-api.jar:
#17 3.500 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 3.526 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 3.563 [resolver:install] Using default POM (ome:formats-api:8.6.0-SNAPSHOT)
#17 3.566 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.pom
#17 3.568 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar
#17 3.569 [resolver:install] Installing ome:formats-api:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 3.571 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 3.572
#17 3.572 deps-turbojpeg:
#17 3.572
#17 3.572 jar-turbojpeg:
#17 3.670 [echo] isSnapshot = true
#17 3.810
#17 3.810 init-title:
#17 3.811 [echo] ----------=========== turbojpeg ===========----------
#17 3.811
#17 3.811 init-timestamp:
#17 3.811
#17 3.811 init:
#17 3.811
#17 3.811 copy-resources:
#17 3.812 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 3.814
#17 3.814 compile:
#17 3.824 [resolver:resolve] Resolving artifacts
#17 3.827 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.031 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 4.031 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 4.031 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 4.031 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 4.031 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 4.031 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 4.731 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.731 [javac] protected void finalize() throws Throwable {
#17 4.732 [javac] ^
#17 4.732 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.732 [javac] super.finalize();
#17 4.732 [javac] ^
#17 4.773 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.773 [javac] protected void finalize() throws Throwable {
#17 4.773 [javac] ^
#17 4.773 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.773 [javac] super.finalize();
#17 4.773 [javac] ^
#17 4.773 [javac] 8 warnings
#17 4.773
#17 4.773 jar:
#17 4.777 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 4.963 [resolver:install] Using default POM (ome:turbojpeg:8.6.0-SNAPSHOT)
#17 4.970 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.pom
#17 4.973 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar
#17 4.975 [resolver:install] Installing ome:turbojpeg:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 4.978 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 4.979
#17 4.979 deps-formats-bsd:
#17 4.979
#17 4.979 jar-formats-bsd:
#17 5.105 [echo] isSnapshot = true
#17 5.244
#17 5.244 init-title:
#17 5.245 [echo] ----------=========== formats-bsd ===========----------
#17 5.245
#17 5.245 init-timestamp:
#17 5.245
#17 5.245 init:
#17 5.245
#17 5.245 copy-resources:
#17 5.245 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.248 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.249
#17 5.249 compile:
#17 5.471 [resolver:resolve] Resolving artifacts
#17 5.496 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.703 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 5.704 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 5.704 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 5.704 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 5.704 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 5.704 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 6.805 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 6.805 [javac] import loci.common.ReflectedUniverse;
#17 6.805 [javac] ^
#17 7.305 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.305 [javac] core.size() != reader.getCoreMetadataList().size())
#17 7.305 [javac] ^
#17 7.305 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.305 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 7.305 [javac] ^
#17 7.305 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.305 [javac] int n = reader.getCoreMetadataList().size();
#17 7.305 [javac] ^
#17 7.305 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.305 [javac] reader.setCoreIndex(coreIndex);
#17 7.305 [javac] ^
#17 7.305 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.305 [javac] int n = reader.getCoreMetadataList().size();
#17 7.305 [javac] ^
#17 7.306 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.306 [javac] int n = reader.getCoreMetadataList().size();
#17 7.306 [javac] ^
#17 7.306 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 7.306 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 7.306 [javac] ^
#17 7.306 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.306 [javac] int n = reader.getCoreMetadataList().size();
#17 7.306 [javac] ^
#17 7.306 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 7.306 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 7.306 [javac] ^
#17 7.306 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.306 [javac] int n = reader.getCoreMetadataList().size();
#17 7.306 [javac] ^
#17 7.306 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.306 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 7.306 [javac] ^
#17 7.306 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.306 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.306 [javac] ^
#17 7.306 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.306 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.306 [javac] ^
#17 7.306 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.306 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 7.306 [javac] ^
#17 7.306 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.306 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 7.306 [javac] ^
#17 7.306 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.306 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 7.306 [javac] ^
#17 7.306 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.307 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 7.307 [javac] ^
#17 7.307 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.307 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 7.307 [javac] ^
#17 7.407 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.407 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 7.407 [javac] ^
#17 7.507 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.507 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 7.507 [javac] ^
#17 7.507 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 7.507 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 7.507 [javac] ^
#17 7.508 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 7.508 [javac] URL url = new URL(urlPath);
#17 7.508 [javac] ^
#17 7.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 7.608 [javac] BitWriter out = new BitWriter();
#17 7.608 [javac] ^
#17 7.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 7.608 [javac] BitWriter out = new BitWriter();
#17 7.608 [javac] ^
#17 7.708 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [deprecation] Double(String) in Double has been deprecated
#17 7.708 [javac] return new Double(v);
#17 7.708 [javac] ^
#17 8.309 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [deprecation] Double(String) in Double has been deprecated
#17 8.309 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 8.309 [javac] ^
#17 8.309 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [deprecation] Double(String) in Double has been deprecated
#17 8.309 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 8.309 [javac] ^
#17 8.309 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [deprecation] Double(double) in Double has been deprecated
#17 8.309 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 8.309 [javac] ^
#17 8.409 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#17 8.409 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 8.409 [javac] ^
#17 8.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.610 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 8.610 [javac] ^
#17 8.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 8.610 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 8.610 [javac] ^
#17 8.710 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [deprecation] Double(double) in Double has been deprecated
#17 8.710 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 8.710 [javac] ^
#17 8.811 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.811 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 8.811 [javac] ^
#17 8.811 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 8.811 [javac] protected ReflectedUniverse r;
#17 8.811 [javac] ^
#17 8.811 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 8.811 [javac] r = new ReflectedUniverse();
#17 8.811 [javac] ^
#17 8.811 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1044: warning: [deprecation] NM in UNITS has been deprecated
#17 8.811 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 8.811 [javac] ^
#17 8.811 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1076: warning: [deprecation] MM in UNITS has been deprecated
#17 8.811 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 8.811 [javac] ^
#17 8.811 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 8.811 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 8.811 [javac] ^
#17 8.811 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1091: warning: [deprecation] MM in UNITS has been deprecated
#17 8.811 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 8.811 [javac] ^
#17 8.811 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#17 8.811 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 8.811 [javac] ^
#17 8.811 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1116: warning: [deprecation] MM in UNITS has been deprecated
#17 8.811 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 8.811 [javac] ^
#17 8.811 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1122: warning: [deprecation] MM in UNITS has been deprecated
#17 8.811 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 8.811 [javac] ^
#17 8.811 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#17 8.811 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 8.812 [javac] ^
#17 8.812 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1175: warning: [deprecation] MM in UNITS has been deprecated
#17 8.812 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 8.812 [javac] ^
#17 8.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Integer(int) in Integer has been deprecated
#17 8.912 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 8.912 [javac] ^
#17 8.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Long(long) in Long has been deprecated
#17 8.912 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 8.912 [javac] ^
#17 8.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Integer(int) in Integer has been deprecated
#17 8.912 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 8.912 [javac] ^
#17 8.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Long(long) in Long has been deprecated
#17 8.912 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 8.912 [javac] ^
#17 9.012 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 9.012 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 9.012 [javac] ^
#17 9.012 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:324: warning: [deprecation] Double(double) in Double has been deprecated
#17 9.012 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 9.012 [javac] ^
#17 9.012 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:346: warning: [deprecation] Double(double) in Double has been deprecated
#17 9.012 [javac] result[i] = new Double(readNumber().doubleValue());
#17 9.012 [javac] ^
#17 9.012 [javac] Note: Some input files use unchecked or unsafe operations.
#17 9.012 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 9.012 [javac] 56 warnings
#17 9.013
#17 9.013 formats-bsd.jar:
#17 9.024 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 9.136 [resolver:install] Using default POM (ome:formats-bsd:8.6.0-SNAPSHOT)
#17 9.139 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.pom
#17 9.141 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar
#17 9.142 [resolver:install] Installing ome:formats-bsd:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 9.144 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 9.144
#17 9.144 deps-formats-gpl:
#17 9.144
#17 9.144 jar-formats-gpl:
#17 9.247 [echo] isSnapshot = true
#17 9.381
#17 9.381 init-title:
#17 9.381 [echo] ----------=========== formats-gpl ===========----------
#17 9.381
#17 9.381 init-timestamp:
#17 9.381
#17 9.381 init:
#17 9.381
#17 9.381 copy-resources:
#17 9.382 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 9.383 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 9.384
#17 9.384 compile:
#17 9.727 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 10.22 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 10.62 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#17 10.69 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 10.88 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 11.02 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#17 11.04 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 11.25 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 11.37 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#17 11.41 [resolver:resolve] Resolving artifacts
#17 11.42 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 11.42 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 11.65 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 11.65 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 12.00 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#17 12.00 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#17 12.02 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 12.23 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 12.23 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 12.23 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 12.23 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 12.23 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 12.23 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 13.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 13.53 [javac] import loci.formats.codec.BitWriter;
#17 13.53 [javac] ^
#17 13.63 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 13.63 [javac] import loci.formats.codec.BitWriter;
#17 13.63 [javac] ^
#17 15.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 15.73 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 15.73 [javac] ^
#17 15.73 [javac] cast to Object for a varargs call
#17 15.73 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 15.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.73 [javac] BitWriter bits = null;
#17 15.73 [javac] ^
#17 15.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.73 [javac] bits = new BitWriter(planes[index].length / 8);
#17 15.73 [javac] ^
#17 16.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 16.13 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 16.13 [javac] ^
#17 16.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 16.53 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 16.53 [javac] ^
#17 16.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 16.53 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 16.53 [javac] ^
#17 16.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.53 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.53 [javac] ^
#17 16.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.53 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.53 [javac] ^
#17 16.82 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:173: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 16.82 [javac] Variable variable = group.findVariable(variableName);
#17 16.82 [javac] ^
#17 16.82 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 16.82 [javac] Variable variable = group.findVariable(variableName);
#17 16.82 [javac] ^
#17 16.82 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:203: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 16.82 [javac] List<Attribute> attributes = variable.getAttributes();
#17 16.82 [javac] ^
#17 16.82 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:245: warning: [deprecation] getName() in CDMNode has been deprecated
#17 16.82 [javac] String groupName = group.getName();
#17 16.82 [javac] ^
#17 16.82 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getAttributes() in Group has been deprecated
#17 16.82 [javac] List<Attribute> attributes = group.getAttributes();
#17 16.82 [javac] ^
#17 16.82 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:254: warning: [deprecation] getName() in CDMNode has been deprecated
#17 16.82 [javac] String variableName = variable.getName();
#17 16.82 [javac] ^
#17 16.82 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:277: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 16.82 [javac] Group nextParent = parent.findGroup(token);
#17 16.82 [javac] ^
#17 16.82 [javac] Note: Some input files use unchecked or unsafe operations.
#17 16.82 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 16.82 [javac] 21 warnings
#17 16.82
#17 16.82 formats-gpl.jar:
#17 16.83 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 16.98 [resolver:install] Using default POM (ome:formats-gpl:8.6.0-SNAPSHOT)
#17 16.98 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.pom
#17 16.98 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar
#17 16.98 [resolver:install] Installing ome:formats-gpl:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 16.99 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 16.99
#17 16.99 deps-bio-formats-plugins:
#17 16.99
#17 16.99 jar-bio-formats-plugins:
#17 17.08 [echo] isSnapshot = true
#17 17.23
#17 17.23 init-title:
#17 17.23 [echo] ----------=========== bio-formats_plugins ===========----------
#17 17.23
#17 17.23 init-timestamp:
#17 17.23
#17 17.23 init:
#17 17.23
#17 17.23 copy-resources:
#17 17.23 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.23 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.23
#17 17.23 compile:
#17 17.49 [resolver:resolve] Resolving artifacts
#17 17.51 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.82 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 17.82 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 17.82 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 17.82 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 17.82 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 17.82 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 18.62 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.62 [javac] import loci.common.ReflectedUniverse;
#17 18.62 [javac] ^
#17 18.62 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.62 [javac] import loci.common.ReflectedUniverse;
#17 18.62 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 19.12 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 19.12 [javac] ^
#17 19.22 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 19.22 [javac] URL url = new URL(urlPath);
#17 19.22 [javac] ^
#17 19.32 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.32 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.32 [javac] ^
#17 19.32 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.32 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.32 [javac] ^
#17 19.42 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.42 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.42 [javac] ^
#17 19.42 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.42 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.42 [javac] ^
#17 19.62 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 19.62 [javac] url = new URL(path);
#17 19.62 [javac] ^
#17 19.79 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 19.79 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 19.79 [javac] 13 warnings
#17 19.79
#17 19.79 bio-formats-plugins.jar:
#17 19.79 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 19.82 [resolver:install] Using default POM (ome:bio-formats_plugins:8.6.0-SNAPSHOT)
#17 19.83 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.pom
#17 19.83 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar
#17 19.83 [resolver:install] Installing ome:bio-formats_plugins:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 19.84 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 19.84
#17 19.84 deps-bio-formats-tools:
#17 19.84
#17 19.84 jar-bio-formats-tools:
#17 19.94 [echo] isSnapshot = true
#17 20.07
#17 20.07 init-title:
#17 20.07 [echo] ----------=========== bio-formats-tools ===========----------
#17 20.07
#17 20.07 init-timestamp:
#17 20.07
#17 20.07 init:
#17 20.07
#17 20.07 copy-resources:
#17 20.07 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 20.07
#17 20.07 compile:
#17 20.32 [resolver:resolve] Resolving artifacts
#17 20.33 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 20.53 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 20.53 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 20.53 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 20.53 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 20.53 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 20.53 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 21.76 [javac] 4 warnings
#17 21.76
#17 21.76 bio-formats-tools.jar:
#17 21.77 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 21.77 [resolver:install] Using default POM (ome:bio-formats-tools:8.6.0-SNAPSHOT)
#17 21.78 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.pom
#17 21.78 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar
#17 21.78 [resolver:install] Installing ome:bio-formats-tools:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 21.78 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 21.78
#17 21.78 deps-tests:
#17 21.78
#17 21.78 jar-tests:
#17 21.87 [echo] isSnapshot = true
#17 22.01
#17 22.01 init-title:
#17 22.01 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 22.01
#17 22.01 init-timestamp:
#17 22.01
#17 22.01 init:
#17 22.01
#17 22.01 copy-resources:
#17 22.01 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 22.01
#17 22.01 compile:
#17 22.30 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.43 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.79 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.82 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.36 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.78 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 24.80 [resolver:resolve] Resolving artifacts
#17 24.80 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.88 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.23 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.24 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.77 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 26.15 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 26.16 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 26.36 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 26.36 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 26.36 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 26.36 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 26.36 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 26.36 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 27.36 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 27.36 [javac] int index = unflattenedReader.getCoreIndex();
#17 27.36 [javac] ^
#17 27.36 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 27.36 [javac] reader.setCoreIndex(index);
#17 27.36 [javac] ^
#17 27.66 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 27.66 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 27.66 [javac] ^
#17 27.66 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 27.66 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 27.66 [javac] ^
#17 27.94 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.94 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 27.94 [javac] ^
#17 27.94 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.94 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 27.94 [javac] ^
#17 27.94 [javac] Note: Some input files use unchecked or unsafe operations.
#17 27.94 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 27.94 [javac] 10 warnings
#17 27.94
#17 27.94 tests.jar:
#17 27.94 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 27.95 [resolver:install] Using default POM (ome:test-suite:8.6.0-SNAPSHOT)
#17 27.96 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.pom
#17 27.96 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.jar
#17 27.96 [resolver:install] Installing ome:test-suite:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 27.96 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 27.96
#17 27.96 jars:
#17 27.96
#17 27.96 copy-jars:
#17 27.96
#17 27.96 deps-formats-api:
#17 28.01 [echo] isSnapshot = true
#17 28.06
#17 28.06 install-pom:
#17 28.18 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/pom-bio-formats-8.6.0-SNAPSHOT.pom
#17 28.18 [resolver:install] Installing ome:pom-bio-formats:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 28.18 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 28.18
#17 28.18 jar-formats-api:
#17 28.27 [echo] isSnapshot = true
#17 28.39
#17 28.39 init-title:
#17 28.39 [echo] ----------=========== formats-api ===========----------
#17 28.39
#17 28.39 init-timestamp:
#17 28.39
#17 28.39 init:
#17 28.39
#17 28.39 copy-resources:
#17 28.39
#17 28.39 compile:
#17 28.55 [resolver:resolve] Resolving artifacts
#17 28.56
#17 28.56 formats-api.jar:
#17 28.58 [resolver:install] Using default POM (ome:formats-api:8.6.0-SNAPSHOT)
#17 28.58 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.pom
#17 28.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar
#17 28.58 [resolver:install] Installing ome:formats-api:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 28.59 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 28.59
#17 28.59 deps-turbojpeg:
#17 28.59
#17 28.59 jar-turbojpeg:
#17 28.67 [echo] isSnapshot = true
#17 28.80
#17 28.80 init-title:
#17 28.80 [echo] ----------=========== turbojpeg ===========----------
#17 28.80
#17 28.80 init-timestamp:
#17 28.80
#17 28.80 init:
#17 28.80
#17 28.80 copy-resources:
#17 28.80
#17 28.80 compile:
#17 28.81 [resolver:resolve] Resolving artifacts
#17 28.81
#17 28.81 jar:
#17 28.81 [resolver:install] Using default POM (ome:turbojpeg:8.6.0-SNAPSHOT)
#17 28.82 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.pom
#17 28.82 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar
#17 28.82 [resolver:install] Installing ome:turbojpeg:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 28.82 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 28.82
#17 28.82 deps-formats-bsd:
#17 28.82
#17 28.82 jar-formats-bsd:
#17 28.90 [echo] isSnapshot = true
#17 29.03
#17 29.03 init-title:
#17 29.03 [echo] ----------=========== formats-bsd ===========----------
#17 29.03
#17 29.03 init-timestamp:
#17 29.03
#17 29.03 init:
#17 29.03
#17 29.03 copy-resources:
#17 29.03
#17 29.03 compile:
#17 29.23 [resolver:resolve] Resolving artifacts
#17 29.24
#17 29.24 formats-bsd.jar:
#17 29.27 [resolver:install] Using default POM (ome:formats-bsd:8.6.0-SNAPSHOT)
#17 29.28 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.pom
#17 29.28 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar
#17 29.28 [resolver:install] Installing ome:formats-bsd:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 29.28 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 29.28
#17 29.28 deps-formats-gpl:
#17 29.28
#17 29.28 jar-formats-gpl:
#17 29.36 [echo] isSnapshot = true
#17 29.49
#17 29.49 init-title:
#17 29.49 [echo] ----------=========== formats-gpl ===========----------
#17 29.49
#17 29.49 init-timestamp:
#17 29.49
#17 29.49 init:
#17 29.49
#17 29.49 copy-resources:
#17 29.49
#17 29.49 compile:
#17 29.73 [resolver:resolve] Resolving artifacts
#17 29.74
#17 29.74 formats-gpl.jar:
#17 29.77 [resolver:install] Using default POM (ome:formats-gpl:8.6.0-SNAPSHOT)
#17 29.78 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.pom
#17 29.78 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar
#17 29.78 [resolver:install] Installing ome:formats-gpl:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 29.78 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 29.78
#17 29.78 deps-bio-formats-plugins:
#17 29.78
#17 29.78 jar-bio-formats-plugins:
#17 29.86 [echo] isSnapshot = true
#17 29.99
#17 29.99 init-title:
#17 29.99 [echo] ----------=========== bio-formats_plugins ===========----------
#17 29.99
#17 29.99 init-timestamp:
#17 29.99
#17 29.99 init:
#17 29.99
#17 29.99 copy-resources:
#17 29.99
#17 29.99 compile:
#17 30.22 [resolver:resolve] Resolving artifacts
#17 30.23
#17 30.23 bio-formats-plugins.jar:
#17 30.25 [resolver:install] Using default POM (ome:bio-formats_plugins:8.6.0-SNAPSHOT)
#17 30.25 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.pom
#17 30.25 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar
#17 30.25 [resolver:install] Installing ome:bio-formats_plugins:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 30.25 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 30.25
#17 30.25 deps-bio-formats-tools:
#17 30.25
#17 30.25 jar-bio-formats-tools:
#17 30.33 [echo] isSnapshot = true
#17 30.46
#17 30.46 init-title:
#17 30.46 [echo] ----------=========== bio-formats-tools ===========----------
#17 30.46
#17 30.46 init-timestamp:
#17 30.46
#17 30.46 init:
#17 30.46
#17 30.46 copy-resources:
#17 30.46
#17 30.46 compile:
#17 30.69 [resolver:resolve] Resolving artifacts
#17 30.70
#17 30.70 bio-formats-tools.jar:
#17 30.70 [resolver:install] Using default POM (ome:bio-formats-tools:8.6.0-SNAPSHOT)
#17 30.70 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.pom
#17 30.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar
#17 30.71 [resolver:install] Installing ome:bio-formats-tools:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 30.71 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 30.71
#17 30.71 deps-tests:
#17 30.71
#17 30.71 jar-tests:
#17 30.79 [echo] isSnapshot = true
#17 30.92
#17 30.92 init-title:
#17 30.92 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 30.92
#17 30.92 init-timestamp:
#17 30.92
#17 30.92 init:
#17 30.92
#17 30.92 copy-resources:
#17 30.92
#17 30.92 compile:
#17 31.16 [resolver:resolve] Resolving artifacts
#17 31.17
#17 31.17 tests.jar:
#17 31.18 [resolver:install] Using default POM (ome:test-suite:8.6.0-SNAPSHOT)
#17 31.18 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.pom
#17 31.18 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.jar
#17 31.18 [resolver:install] Installing ome:test-suite:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 31.19 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 31.19
#17 31.19 jars:
#17 31.19
#17 31.19 tools:
#17 31.19 [echo] ----------=========== bioformats_package ===========----------
#17 31.27 [echo] isSnapshot = true
#17 31.39
#17 31.39 init-timestamp:
#17 31.39
#17 31.39 bundle:
#17 31.63 [resolver:resolve] Resolving artifacts
#17 31.64 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.67 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.2.2-SNAPSHOT/ome-common-6.2.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.69 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.71 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.71 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.77 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.78 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.83 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.84 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.07 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.11 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.13 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.18 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.19 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.20 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.20 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.35 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.79 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.79 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.79 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.80 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.88 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.88 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.89 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.4-SNAPSHOT/ome-xml-6.5.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.94 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.4-SNAPSHOT/specification-6.5.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.99 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.01 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.4-SNAPSHOT/ome-codecs-1.1.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.02 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.14 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/2.0.3/aircompressor-2.0.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.17 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.24 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.28 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.28 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.37 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.39 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.80 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.82 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.85 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.94 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.95 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.97 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.98 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.19 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.25 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.30 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.39 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.41 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.41 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.52 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.53 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.96 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.97 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.07 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.12 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.12 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.13 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.19 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.52 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.54 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.54 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.56 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.56 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.59 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.94 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.16/logback-core-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.04 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.16/logback-classic-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.43 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 43.14 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 43.70 [resolver:install] Using default POM (ome:bioformats_package:8.6.0-SNAPSHOT)
#17 43.71 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/bioformats_package-8.6.0-SNAPSHOT.pom
#17 43.71 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/bioformats_package-8.6.0-SNAPSHOT.jar
#17 43.75 [resolver:install] Installing ome:bioformats_package:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 43.75 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 43.76
#17 43.76 BUILD SUCCESSFUL
#17 43.76 Total time: 43 seconds
#17 DONE 44.0s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.0s
#19 exporting to image
#19 exporting layers
#19 exporting layers 3.3s done
#19 writing image sha256:ba3b514c49a4f0f642b3df238e6091fb63217b5055f2f4e597c1389bb7664025 done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 3.3s
Finished: SUCCESS
