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#14 396.5 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-core/2.3.1/jackson-core-2.3.1.jar
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#14 396.5 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.1/jackson-databind-2.3.1.jar
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#14 396.5 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jaxrs/jackson-jaxrs-json-provider/2.3.1/jackson-jaxrs-json-provider-2.3.1.jar
#14 396.5 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jaxrs/jackson-jaxrs-base/2.3.1/jackson-jaxrs-base-2.3.1.jar
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#14 396.6 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/jcl-over-slf4j/1.7.7/jcl-over-slf4j-1.7.7.jar
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#14 396.6 Progress (4): 914 kB | 219/591 kB | 199/282 kB | 77/121 kB
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#14 396.6 Progress (3): 281/591 kB | 240/282 kB | 121 kB
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#14 396.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.8/plexus-utils-3.0.8.jar
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#14 396.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.15/plexus-interpolation-1.15.jar
#14 396.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf-proto/1.9/hawtbuf-proto-1.9.jar (27 kB at 103 kB/s)
#14 396.6 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/aether/aether-api/1.13.1/aether-api-1.13.1.jar
#14 396.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.3.5/httpclient-4.3.5.jar (591 kB at 2.2 MB/s)
#14 396.6 Downloading from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.1.2/logback-core-1.1.2.jar
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#14 396.6 Progress (1): 82/232 kB
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#14 398.5 [output clipped, log limit 2MiB reached]
#14 490.5 SLF4J: No SLF4J providers were found.
#14 490.5 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 490.5 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 501.0s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.479 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.656 [echo] isSnapshot = true
#16 1.870
#16 1.870 copy-jars:
#16 1.870
#16 1.870 deps-formats-api:
#16 1.954 [echo] isSnapshot = true
#16 2.012
#16 2.012 install-pom:
#16 2.198 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 2.221 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 2.226 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.227
#16 2.227 jar-formats-api:
#16 2.340 [echo] isSnapshot = true
#16 2.531
#16 2.531 init-title:
#16 2.531 [echo] ----------=========== formats-api ===========----------
#16 2.531
#16 2.531 init-timestamp:
#16 2.537
#16 2.537 init:
#16 2.537
#16 2.537 copy-resources:
#16 2.538 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.552 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.555
#16 2.555 compile:
#16 2.741 [resolver:resolve] Resolving artifacts
#16 2.770 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.990 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.691 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.691 [javac] import loci.common.ReflectedUniverse;
#16 3.691 [javac] ^
#16 3.892 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.892 [javac] int currentIndex = r.getCoreIndex();
#16 3.892 [javac] ^
#16 3.892 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.892 [javac] r.setCoreIndex(coreIndex);
#16 3.892 [javac] ^
#16 3.892 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.892 [javac] r.setCoreIndex(currentIndex);
#16 3.892 [javac] ^
#16 3.993 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.993 [javac] public void setCoreIndex(int no) {
#16 3.993 [javac] ^
#16 3.993 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.993 [javac] public int getCoreIndex() {
#16 3.993 [javac] ^
#16 3.993 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.993 [javac] public int coreIndexToSeries(int index)
#16 3.993 [javac] ^
#16 3.993 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.993 [javac] public int seriesToCoreIndex(int series)
#16 3.993 [javac] ^
#16 3.993 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.994 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.994 [javac] ^
#16 4.094 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.094 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.094 [javac] ^
#16 4.094 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.094 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.094 [javac] ^
#16 4.094 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.094 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.094 [javac] ^
#16 4.095 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.095 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.095 [javac] ^
#16 4.195 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.195 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.195 [javac] ^
#16 4.195 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.195 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.195 [javac] ^
#16 4.296 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.296 [javac] public void setCoreIndex(int no) {
#16 4.296 [javac] ^
#16 4.296 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.296 [javac] public int getCoreIndex() {
#16 4.296 [javac] ^
#16 4.296 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.296 [javac] public int coreIndexToSeries(int index) {
#16 4.296 [javac] ^
#16 4.296 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.296 [javac] public int seriesToCoreIndex(int series) {
#16 4.296 [javac] ^
#16 4.296 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.296 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.297 [javac] ^
#16 4.297 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.297 [javac] return getReader().getCoreMetadataList();
#16 4.297 [javac] ^
#16 4.297 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.297 [javac] return getReader().getCoreIndex();
#16 4.297 [javac] ^
#16 4.297 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.297 [javac] getReader().setCoreIndex(no);
#16 4.297 [javac] ^
#16 4.297 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.297 [javac] return getReader().seriesToCoreIndex(series);
#16 4.297 [javac] ^
#16 4.298 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.298 [javac] return getReader().coreIndexToSeries(index);
#16 4.298 [javac] ^
#16 4.398 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.398 [javac] public void setCoreIndex(int no) {
#16 4.398 [javac] ^
#16 4.398 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.398 [javac] public int getCoreIndex() {
#16 4.398 [javac] ^
#16 4.398 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.398 [javac] public int coreIndexToSeries(int index) {
#16 4.398 [javac] ^
#16 4.398 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.398 [javac] public int seriesToCoreIndex(int series) {
#16 4.398 [javac] ^
#16 4.398 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.399 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.399 [javac] ^
#16 4.399 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.399 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.399 [javac] ^
#16 4.399 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.399 [javac] return reader.getCoreIndex();
#16 4.399 [javac] ^
#16 4.399 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.399 [javac] reader.setCoreIndex(no);
#16 4.399 [javac] ^
#16 4.399 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.399 [javac] return reader.seriesToCoreIndex(series);
#16 4.399 [javac] ^
#16 4.399 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.399 [javac] return reader.coreIndexToSeries(index);
#16 4.399 [javac] ^
#16 4.500 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.500 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.500 [javac] 36 warnings
#16 4.548
#16 4.548 formats-api.jar:
#16 4.548 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.573 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.604 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 4.608 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 4.633 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 4.634 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.636 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.637
#16 4.637 deps-turbojpeg:
#16 4.638
#16 4.638 jar-turbojpeg:
#16 4.741 [echo] isSnapshot = true
#16 4.921
#16 4.921 init-title:
#16 4.921 [echo] ----------=========== turbojpeg ===========----------
#16 4.921
#16 4.921 init-timestamp:
#16 4.922
#16 4.922 init:
#16 4.922
#16 4.922 copy-resources:
#16 4.922 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.924
#16 4.924 compile:
#16 4.934 [resolver:resolve] Resolving artifacts
#16 4.937 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.140 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.741 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 5.741 [javac] protected void finalize() throws Throwable {
#16 5.741 [javac] ^
#16 5.741 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 5.741 [javac] super.finalize();
#16 5.741 [javac] ^
#16 5.824 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 5.824 [javac] protected void finalize() throws Throwable {
#16 5.824 [javac] ^
#16 5.824 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 5.824 [javac] super.finalize();
#16 5.824 [javac] ^
#16 5.824 [javac] 5 warnings
#16 5.825
#16 5.825 jar:
#16 5.830 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.017 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 6.025 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 6.040 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 6.042 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.046 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.047
#16 6.047 deps-formats-bsd:
#16 6.047
#16 6.047 jar-formats-bsd:
#16 6.150 [echo] isSnapshot = true
#16 6.306
#16 6.306 init-title:
#16 6.306 [echo] ----------=========== formats-bsd ===========----------
#16 6.306
#16 6.306 init-timestamp:
#16 6.306
#16 6.306 init:
#16 6.306
#16 6.306 copy-resources:
#16 6.307 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.310 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.311
#16 6.311 compile:
#16 6.528 [resolver:resolve] Resolving artifacts
#16 6.556 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.865 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.866 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.866 [javac] import loci.common.ReflectedUniverse;
#16 7.866 [javac] ^
#16 8.266 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.266 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.266 [javac] ^
#16 8.266 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.266 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.266 [javac] ^
#16 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.367 [javac] int n = reader.getCoreMetadataList().size();
#16 8.367 [javac] ^
#16 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.367 [javac] reader.setCoreIndex(coreIndex);
#16 8.367 [javac] ^
#16 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.367 [javac] int n = reader.getCoreMetadataList().size();
#16 8.367 [javac] ^
#16 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.367 [javac] int n = reader.getCoreMetadataList().size();
#16 8.367 [javac] ^
#16 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.367 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.367 [javac] ^
#16 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.367 [javac] int n = reader.getCoreMetadataList().size();
#16 8.367 [javac] ^
#16 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.368 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.368 [javac] ^
#16 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.368 [javac] int n = reader.getCoreMetadataList().size();
#16 8.368 [javac] ^
#16 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.368 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.368 [javac] ^
#16 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.368 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.368 [javac] ^
#16 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.368 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.368 [javac] ^
#16 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.368 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.368 [javac] ^
#16 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.368 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.368 [javac] ^
#16 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.368 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.369 [javac] ^
#16 8.369 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.369 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.369 [javac] ^
#16 8.369 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.369 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.369 [javac] ^
#16 8.369 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.369 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.369 [javac] ^
#16 8.569 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.569 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.569 [javac] ^
#16 8.670 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.670 [javac] BitWriter out = new BitWriter();
#16 8.670 [javac] ^
#16 8.670 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.670 [javac] BitWriter out = new BitWriter();
#16 8.670 [javac] ^
#16 8.770 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [deprecation] Double(String) in Double has been deprecated
#16 8.770 [javac] return new Double(v);
#16 8.770 [javac] ^
#16 9.371 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2009: warning: [deprecation] Double(String) in Double has been deprecated
#16 9.371 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.371 [javac] ^
#16 9.371 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2016: warning: [deprecation] Double(String) in Double has been deprecated
#16 9.371 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.371 [javac] ^
#16 9.371 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2023: warning: [deprecation] Double(double) in Double has been deprecated
#16 9.371 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.371 [javac] ^
#16 9.472 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 9.472 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 9.472 [javac] ^
#16 9.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.772 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.772 [javac] ^
#16 9.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.772 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.772 [javac] ^
#16 9.872 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.872 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.872 [javac] ^
#16 9.872 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.872 [javac] protected ReflectedUniverse r;
#16 9.872 [javac] ^
#16 9.872 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.872 [javac] r = new ReflectedUniverse();
#16 9.873 [javac] ^
#16 9.973 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:992: warning: [deprecation] NM in UNITS has been deprecated
#16 9.973 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.973 [javac] ^
#16 9.973 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1024: warning: [deprecation] MM in UNITS has been deprecated
#16 9.973 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.973 [javac] ^
#16 9.973 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1037: warning: [deprecation] MM in UNITS has been deprecated
#16 9.973 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.973 [javac] ^
#16 9.973 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1038: warning: [deprecation] MM in UNITS has been deprecated
#16 9.973 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.973 [javac] ^
#16 9.973 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1057: warning: [deprecation] MM in UNITS has been deprecated
#16 9.974 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.974 [javac] ^
#16 9.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1061: warning: [deprecation] MM in UNITS has been deprecated
#16 9.974 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.974 [javac] ^
#16 9.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1067: warning: [deprecation] MM in UNITS has been deprecated
#16 9.974 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.974 [javac] ^
#16 9.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1115: warning: [deprecation] MM in UNITS has been deprecated
#16 9.974 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.974 [javac] ^
#16 9.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1119: warning: [deprecation] MM in UNITS has been deprecated
#16 9.974 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.974 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 10.07 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Long(long) in Long has been deprecated
#16 10.07 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 10.07 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Long(long) in Long has been deprecated
#16 10.07 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.07 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [deprecation] Double(double) in Double has been deprecated
#16 10.07 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [deprecation] Double(double) in Double has been deprecated
#16 10.07 [javac] result[i] = new Double(readNumber().doubleValue());
#16 10.07 [javac] ^
#16 10.14 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.14 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.14 [javac] 50 warnings
#16 10.14
#16 10.14 formats-bsd.jar:
#16 10.15 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.26 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 10.27 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 10.28 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 10.28 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 10.28 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.28
#16 10.28 deps-formats-gpl:
#16 10.28
#16 10.28 jar-formats-gpl:
#16 10.37 [echo] isSnapshot = true
#16 10.53
#16 10.53 init-title:
#16 10.53 [echo] ----------=========== formats-gpl ===========----------
#16 10.53
#16 10.53 init-timestamp:
#16 10.53
#16 10.53 init:
#16 10.53
#16 10.53 copy-resources:
#16 10.53 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.53 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.53
#16 10.53 compile:
#16 10.78 [resolver:resolve] Resolving artifacts
#16 11.00 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.00 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.25 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.25 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.29 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.29 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.31 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.62 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 12.72 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.72 [javac] import loci.formats.codec.BitWriter;
#16 12.72 [javac] ^
#16 12.82 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.82 [javac] import loci.formats.codec.BitWriter;
#16 12.82 [javac] ^
#16 14.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 14.52 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 14.52 [javac] ^
#16 14.52 [javac] cast to Object for a varargs call
#16 14.52 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 14.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.62 [javac] BitWriter bits = null;
#16 14.62 [javac] ^
#16 14.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.62 [javac] bits = new BitWriter(planes[index].length / 8);
#16 14.62 [javac] ^
#16 14.92 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 14.92 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 14.92 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.32 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.32 [javac] ^
#16 15.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.32 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.32 [javac] ^
#16 15.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 15.59 [javac] List<Attribute> attributes = variable.getAttributes();
#16 15.59 [javac] ^
#16 15.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.59 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 15.59 [javac] ^
#16 15.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.59 [javac] String groupName = group.getName();
#16 15.59 [javac] ^
#16 15.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 15.59 [javac] List<Attribute> attributes = group.getAttributes();
#16 15.59 [javac] ^
#16 15.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.59 [javac] String attributeName = attribute.getName();
#16 15.59 [javac] ^
#16 15.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.59 [javac] String variableName = variable.getName();
#16 15.59 [javac] ^
#16 15.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 15.59 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 15.59 [javac] ^
#16 15.59 [javac] Note: Some input files use unchecked or unsafe operations.
#16 15.59 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 15.59 [javac] 16 warnings
#16 15.59
#16 15.59 formats-gpl.jar:
#16 15.60 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 15.73 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 15.74 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 15.75 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 15.75 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 15.75 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 15.75
#16 15.75 deps-bio-formats-plugins:
#16 15.75
#16 15.75 jar-bio-formats-plugins:
#16 15.85 [echo] isSnapshot = true
#16 16.01
#16 16.01 init-title:
#16 16.01 [echo] ----------=========== bio-formats_plugins ===========----------
#16 16.01
#16 16.01 init-timestamp:
#16 16.01
#16 16.01 init:
#16 16.01
#16 16.01 copy-resources:
#16 16.01 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.01 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.01
#16 16.01 compile:
#16 16.26 [resolver:resolve] Resolving artifacts
#16 16.28 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.59 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 17.39 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.39 [javac] import loci.common.ReflectedUniverse;
#16 17.39 [javac] ^
#16 17.39 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.39 [javac] import loci.common.ReflectedUniverse;
#16 17.39 [javac] ^
#16 17.79 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 17.79 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 17.79 [javac] ^
#16 17.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.99 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.99 [javac] ^
#16 17.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.99 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.99 [javac] ^
#16 18.09 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.09 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.09 [javac] ^
#16 18.09 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.09 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.09 [javac] ^
#16 18.39 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 18.39 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.39 [javac] 8 warnings
#16 18.42
#16 18.42 bio-formats-plugins.jar:
#16 18.43 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 18.45 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 18.46 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 18.52 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 18.52 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 18.52 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 18.52
#16 18.52 deps-bio-formats-tools:
#16 18.52
#16 18.52 jar-bio-formats-tools:
#16 18.61 [echo] isSnapshot = true
#16 18.76
#16 18.76 init-title:
#16 18.76 [echo] ----------=========== bio-formats-tools ===========----------
#16 18.76
#16 18.76 init-timestamp:
#16 18.76
#16 18.76 init:
#16 18.76
#16 18.76 copy-resources:
#16 18.76 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.76
#16 18.76 compile:
#16 19.01 [resolver:resolve] Resolving artifacts
#16 19.02 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.33 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 20.30 [javac] 1 warning
#16 20.30
#16 20.30 bio-formats-tools.jar:
#16 20.30 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.31 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 20.32 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 20.32 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 20.33 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.33 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.33
#16 20.33 deps-tests:
#16 20.33
#16 20.33 jar-tests:
#16 20.42 [echo] isSnapshot = true
#16 20.58
#16 20.58 init-title:
#16 20.58 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 20.58
#16 20.58 init-timestamp:
#16 20.58
#16 20.58 init:
#16 20.58
#16 20.58 copy-resources:
#16 20.58 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 20.58
#16 20.58 compile:
#16 20.89 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 20.97 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 20.98 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.42 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.84 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 22.09 [resolver:resolve] Resolving artifacts
#16 22.10 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.14 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.15 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.55 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.83 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 22.83 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.14 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 24.04 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.04 [javac] int index = unflattenedReader.getCoreIndex();
#16 24.04 [javac] ^
#16 24.04 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.04 [javac] reader.setCoreIndex(index);
#16 24.04 [javac] ^
#16 24.34 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.34 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.34 [javac] ^
#16 24.34 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.34 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.34 [javac] ^
#16 24.54 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.54 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 24.54 [javac] ^
#16 24.54 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.54 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 24.54 [javac] ^
#16 24.61 [javac] Note: Some input files use unchecked or unsafe operations.
#16 24.61 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 24.61 [javac] 7 warnings
#16 24.61
#16 24.61 tests.jar:
#16 24.61 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 24.63 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 24.63 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 24.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 24.63 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.63 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.64
#16 24.64 jars:
#16 24.64
#16 24.64 copy-jars:
#16 24.64
#16 24.64 deps-formats-api:
#16 24.69 [echo] isSnapshot = true
#16 24.73
#16 24.73 install-pom:
#16 24.87 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 24.87 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.88 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 24.88
#16 24.88 jar-formats-api:
#16 24.97 [echo] isSnapshot = true
#16 25.15
#16 25.15 init-title:
#16 25.15 [echo] ----------=========== formats-api ===========----------
#16 25.15
#16 25.15 init-timestamp:
#16 25.15
#16 25.15 init:
#16 25.15
#16 25.15 copy-resources:
#16 25.15
#16 25.15 compile:
#16 25.29 [resolver:resolve] Resolving artifacts
#16 25.30
#16 25.30 formats-api.jar:
#16 25.32 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 25.33 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 25.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 25.33 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.33 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.33
#16 25.33 deps-turbojpeg:
#16 25.33
#16 25.33 jar-turbojpeg:
#16 25.42 [echo] isSnapshot = true
#16 25.57
#16 25.57 init-title:
#16 25.57 [echo] ----------=========== turbojpeg ===========----------
#16 25.57
#16 25.57 init-timestamp:
#16 25.57
#16 25.57 init:
#16 25.57
#16 25.57 copy-resources:
#16 25.57
#16 25.57 compile:
#16 25.58 [resolver:resolve] Resolving artifacts
#16 25.58
#16 25.58 jar:
#16 25.59 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 25.59 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 25.59 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 25.59 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.60 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.60
#16 25.60 deps-formats-bsd:
#16 25.60
#16 25.60 jar-formats-bsd:
#16 25.69 [echo] isSnapshot = true
#16 25.84
#16 25.84 init-title:
#16 25.84 [echo] ----------=========== formats-bsd ===========----------
#16 25.84
#16 25.84 init-timestamp:
#16 25.84
#16 25.84 init:
#16 25.84
#16 25.84 copy-resources:
#16 25.85
#16 25.85 compile:
#16 26.04 [resolver:resolve] Resolving artifacts
#16 26.06
#16 26.06 formats-bsd.jar:
#16 26.10 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 26.10 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 26.10 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 26.10 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.11 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.11
#16 26.11 deps-formats-gpl:
#16 26.11
#16 26.11 jar-formats-gpl:
#16 26.19 [echo] isSnapshot = true
#16 26.34
#16 26.34 init-title:
#16 26.34 [echo] ----------=========== formats-gpl ===========----------
#16 26.34
#16 26.34 init-timestamp:
#16 26.34
#16 26.34 init:
#16 26.34
#16 26.34 copy-resources:
#16 26.34
#16 26.34 compile:
#16 26.58 [resolver:resolve] Resolving artifacts
#16 26.60
#16 26.60 formats-gpl.jar:
#16 26.63 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 26.64 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 26.64 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 26.64 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.64 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.64
#16 26.64 deps-bio-formats-plugins:
#16 26.64
#16 26.64 jar-bio-formats-plugins:
#16 26.72 [echo] isSnapshot = true
#16 26.87
#16 26.87 init-title:
#16 26.87 [echo] ----------=========== bio-formats_plugins ===========----------
#16 26.87
#16 26.87 init-timestamp:
#16 26.87
#16 26.87 init:
#16 26.87
#16 26.87 copy-resources:
#16 26.87
#16 26.87 compile:
#16 27.11 [resolver:resolve] Resolving artifacts
#16 27.12
#16 27.12 bio-formats-plugins.jar:
#16 27.13 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 27.14 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 27.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 27.14 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.14 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.14
#16 27.14 deps-bio-formats-tools:
#16 27.14
#16 27.14 jar-bio-formats-tools:
#16 27.23 [echo] isSnapshot = true
#16 27.38
#16 27.38 init-title:
#16 27.38 [echo] ----------=========== bio-formats-tools ===========----------
#16 27.38
#16 27.38 init-timestamp:
#16 27.38
#16 27.38 init:
#16 27.38
#16 27.38 copy-resources:
#16 27.39
#16 27.39 compile:
#16 27.63 [resolver:resolve] Resolving artifacts
#16 27.64
#16 27.64 bio-formats-tools.jar:
#16 27.64 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 27.65 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 27.65 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 27.65 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.65 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.65
#16 27.65 deps-tests:
#16 27.65
#16 27.65 jar-tests:
#16 27.74 [echo] isSnapshot = true
#16 27.89
#16 27.89 init-title:
#16 27.89 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 27.89
#16 27.89 init-timestamp:
#16 27.89
#16 27.89 init:
#16 27.89
#16 27.89 copy-resources:
#16 27.89
#16 27.89 compile:
#16 28.13 [resolver:resolve] Resolving artifacts
#16 28.14
#16 28.14 tests.jar:
#16 28.15 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 28.15 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 28.16 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 28.16 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.16 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.16
#16 28.16 jars:
#16 28.16
#16 28.16 tools:
#16 28.16 [echo] ----------=========== bioformats_package ===========----------
#16 28.25 [echo] isSnapshot = true
#16 28.40
#16 28.40 init-timestamp:
#16 28.40
#16 28.40 bundle:
#16 28.65 [resolver:resolve] Resolving artifacts
#16 28.66 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.69 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.23-SNAPSHOT/ome-common-6.0.23-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.71 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.74 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.75 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.81 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.82 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.88 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.89 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.11 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.16 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.18 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.24 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.25 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.26 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.27 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.44 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.94 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.95 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.95 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.96 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.04 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.05 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.05 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.11 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.16 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.18 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.19 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.33 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.36 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.44 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.47 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.48 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.51 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.54 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.97 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.00 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.03 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.10 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.20 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.21 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.23 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.24 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.47 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.55 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.60 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.70 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.72 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.72 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.85 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.85 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.30 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.31 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.42 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.48 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.49 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.50 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.66 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.68 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.68 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.70 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.70 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.73 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.12 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.24 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.58 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 39.24 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.82 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 39.82 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 39.86 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 39.90 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 39.90 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 39.91
#16 39.91 BUILD SUCCESSFUL
#16 39.91 Total time: 39 seconds
#16 DONE 40.4s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.4s done
#18 writing image sha256:67a4e01a703d9f7b9e91c6b2f2a6b99839865e6eb3177f6fdf3a23ba73957b96 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.4s
[33m1 warning found (use --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS