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#15 382.6 Progress (3): 197 kB | 0.5/1.5 MB | 33 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar
#15 382.6 Progress (3): 197 kB | 0.5/1.5 MB | 33 kB
Progress (4): 197 kB | 0.5/1.5 MB | 33 kB | 4.1/291 kB
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Progress (4): 197 kB | 0.7/1.5 MB | 33 kB | 130/291 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar (197 kB at 690 kB/s)
#15 382.6 Progress (3): 0.7/1.5 MB | 33 kB | 134/291 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.26/plexus-interpolation-1.26.jar
#15 382.6 Progress (3): 0.7/1.5 MB | 33 kB | 138/291 kB
Progress (3): 0.7/1.5 MB | 33 kB | 142/291 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar (33 kB at 115 kB/s)
#15 382.6 Progress (2): 0.7/1.5 MB | 159/291 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar (291 kB at 897 kB/s)
#15 382.6 Progress (3): 1.3/1.5 MB | 50 kB | 85 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar (50 kB at 148 kB/s)
#15 382.6 Progress (2): 1.5/1.5 MB | 85 kB
Progress (2): 1.5 MB | 85 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.26/plexus-interpolation-1.26.jar (85 kB at 242 kB/s)
#15 382.6 Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/10.0.1/guava-10.0.1.jar (1.5 MB at 4.1 MB/s)
#15 382.8 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.7/nexus-staging-maven-plugin-1.6.7.pom
#15 382.8 Progress (1): 4.1 kB
Progress (1): 8.2 kB
Progress (1): 12 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.7/nexus-staging-maven-plugin-1.6.7.pom (12 kB at 183 kB/s)
#15 382.8 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-staging/1.6.7/nexus-staging-1.6.7.pom
#15 382.9 Progress (1): 2.8 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-staging/1.6.7/nexus-staging-1.6.7.pom (2.8 kB at 42 kB/s)
#15 382.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-maven-plugins/1.6.7/nexus-maven-plugins-1.6.7.pom
#15 382.9 Progress (1): 4.1 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-maven-plugins/1.6.7/nexus-maven-plugins-1.6.7.pom (18 kB at 274 kB/s)
#15 383.0 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-common/1.6.7/nexus-common-1.6.7.pom
#15 383.0 Progress (1): 2.2 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-common/1.6.7/nexus-common-1.6.7.pom (2.2 kB at 37 kB/s)
#15 383.0 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.9.1-02/nexus-client-core-2.9.1-02.pom
#15 383.1 Progress (1): 4.1 kB
Progress (1): 4.9 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.9.1-02/nexus-client-core-2.9.1-02.pom (4.9 kB at 82 kB/s)
#15 383.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-components/2.9.1-02/nexus-components-2.9.1-02.pom
#15 383.1 Progress (1): 2.6 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-components/2.9.1-02/nexus-components-2.9.1-02.pom (2.6 kB at 41 kB/s)
#15 383.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-oss/2.9.1-02/nexus-oss-2.9.1-02.pom
#15 383.2 Progress (1): 4.1 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-oss/2.9.1-02/nexus-oss-2.9.1-02.pom (37 kB at 595 kB/s)
#15 383.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-all/2.9.1-02/nexus-buildsupport-all-2.9.1-02.pom
#15 383.3 Progress (1): 4.1 kB
Progress (1): 5.7 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-all/2.9.1-02/nexus-buildsupport-all-2.9.1-02.pom (5.7 kB at 88 kB/s)
#15 383.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport/2.9.1-02/nexus-buildsupport-2.9.1-02.pom
#15 383.3 Progress (1): 2.0 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport/2.9.1-02/nexus-buildsupport-2.9.1-02.pom (2.0 kB at 32 kB/s)
#15 383.4 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-commons/2.9.1-02/nexus-buildsupport-commons-2.9.1-02.pom
#15 383.4 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-commons/2.9.1-02/nexus-buildsupport-commons-2.9.1-02.pom
#15 383.5 Progress (1): 3.0 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-commons/2.9.1-02/nexus-buildsupport-commons-2.9.1-02.pom (3.0 kB at 48 kB/s)
#15 383.5 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-db/2.9.1-02/nexus-buildsupport-db-2.9.1-02.pom
#15 383.6 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-db/2.9.1-02/nexus-buildsupport-db-2.9.1-02.pom
#15 383.6 Progress (1): 2.0 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-db/2.9.1-02/nexus-buildsupport-db-2.9.1-02.pom (2.0 kB at 33 kB/s)
#15 383.7 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-httpclient/2.9.1-02/nexus-buildsupport-httpclient-2.9.1-02.pom
#15 383.8 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-httpclient/2.9.1-02/nexus-buildsupport-httpclient-2.9.1-02.pom
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#15 398.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/ConfigurationTree.java: Some input files use unchecked or unsafe operations.
#15 398.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/ConfigurationTree.java: Recompile with -Xlint:unchecked for details.
#15 398.9 [[1;34mINFO[m]
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#15 398.9 [[1;34mINFO[m] Recompiling the module because of [1mchanged dependency[m.
#15 398.9 [[1;34mINFO[m] Compiling 1 source file with javac [debug release 11] to target/test-classes
#15 399.0 [[1;34mINFO[m]
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#15 399.0 [[1;34mINFO[m]
#15 399.0 [[1;34mINFO[m] -------------------------------------------------------
#15 399.0 [[1;34mINFO[m] T E S T S
#15 399.0 [[1;34mINFO[m] -------------------------------------------------------
#15 399.1 [[1;34mINFO[m] Running loci.tests.testng.[1mConfigurationTreeTest[m
#15 399.4 [[1;34mINFO[m] [1;32mTests run: [0;1;32m16[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.303 s - in loci.tests.testng.[1mConfigurationTreeTest[m
#15 399.7 [[1;34mINFO[m]
#15 399.7 [[1;34mINFO[m] Results:
#15 399.7 [[1;34mINFO[m]
#15 399.7 [[1;34mINFO[m] [1;32mTests run: 16, Failures: 0, Errors: 0, Skipped: 0[m
#15 399.7 [[1;34mINFO[m]
#15 399.7 [[1;34mINFO[m]
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#15 399.7 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/test-suite/target/test-suite-8.6.0-SNAPSHOT.jar
#15 399.8 [[1;34mINFO[m]
#15 399.8 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mtest-suite[0;1m >>>[m
#15 399.8 [[1;34mINFO[m]
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#15 399.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/test-suite' && 'git' 'rev-parse' '--verify' 'HEAD'
#15 399.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/test-suite
#15 399.8 [[1;34mINFO[m] Storing buildNumber: 3e3abdc793b5eadfd9372a8d6d38bd68d86a1334 at timestamp: 1784161566680
#15 399.8 [[1;34mINFO[m] Storing buildScmBranch: merge_ci
#15 399.8 [[1;34mINFO[m]
#15 399.8 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mtest-suite[0;1m <<<[m
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#15 399.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/test-suite/target/test-suite-8.6.0-SNAPSHOT-sources.jar
#15 399.8 [[1;34mINFO[m]
#15 399.8 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mtest-suite[0;1m ---[m
#15 399.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/test-suite/target/test-suite-8.6.0-SNAPSHOT-tests.jar
#15 399.8 [[1;34mINFO[m]
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#15 399.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/test-suite/target/test-suite-8.6.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.jar
#15 399.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.pom
#15 399.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/test-suite/target/test-suite-8.6.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT-sources.jar
#15 399.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/test-suite/target/test-suite-8.6.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT-tests.jar
#15 399.8 [[1;34mINFO[m]
#15 399.8 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats-examples[0;1m >----------------------[m
#15 399.8 [[1;34mINFO[m] [1mBuilding Bio-Formats examples 8.6.0-SNAPSHOT [21/24][m
#15 399.8 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
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#15 399.9 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/mojo/mojo-parent/28/mojo-parent-28.pom
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#15 400.0 Downloading from central: https://repo.maven.apache.org/maven2/ome/formats-bsd/8.5.0/formats-bsd-8.5.0.pom
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#15 400.2 Downloading from central: https://repo.maven.apache.org/maven2/ome/pom-bio-formats/8.5.0/pom-bio-formats-8.5.0.pom
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#15 401.3 Downloading from central: https://repo.maven.apache.org/maven2/
#15 401.3 [output clipped, log limit 2MiB reached]
#15 428.3 WARNING: A restricted method in java.lang.System has been called
#15 428.3 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 428.3 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 428.3 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 428.3
#15 474.7 SLF4J: No SLF4J providers were found.
#15 474.7 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 474.7 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 474.9 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 474.9 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 474.9 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 474.9 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 483.5s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.2s
#17 [13/14] RUN ant jars tools
#17 0.438 Buildfile: /bio-formats-build/bioformats/build.xml
#17 0.815 [echo] isSnapshot = true
#17 2.923
#17 2.923 copy-jars:
#17 2.923
#17 2.923 deps-formats-api:
#17 3.005 [echo] isSnapshot = true
#17 3.061
#17 3.061 install-pom:
#17 3.243 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/pom-bio-formats-8.6.0-SNAPSHOT.pom
#17 3.256 [resolver:install] Installing ome:pom-bio-formats:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 3.260 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 3.261
#17 3.261 jar-formats-api:
#17 3.373 [echo] isSnapshot = true
#17 3.542
#17 3.542 init-title:
#17 3.542 [echo] ----------=========== formats-api ===========----------
#17 3.542
#17 3.542 init-timestamp:
#17 3.550
#17 3.550 init:
#17 3.550
#17 3.550 copy-resources:
#17 3.552 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.566 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.568
#17 3.568 compile:
#17 3.738 [resolver:resolve] Resolving artifacts
#17 3.763 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.975 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 3.975 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 3.975 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 4.876 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 4.876 [javac] int currentIndex = r.getCoreIndex();
#17 4.876 [javac] ^
#17 4.876 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.876 [javac] r.setCoreIndex(coreIndex);
#17 4.876 [javac] ^
#17 4.877 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.877 [javac] r.setCoreIndex(currentIndex);
#17 4.877 [javac] ^
#17 5.077 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.077 [javac] public void setCoreIndex(int no) {
#17 5.077 [javac] ^
#17 5.077 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.077 [javac] public int getCoreIndex() {
#17 5.077 [javac] ^
#17 5.077 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.077 [javac] public int coreIndexToSeries(int index)
#17 5.077 [javac] ^
#17 5.077 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.077 [javac] public int seriesToCoreIndex(int series)
#17 5.078 [javac] ^
#17 5.078 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.078 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.078 [javac] ^
#17 5.178 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.178 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 5.178 [javac] ^
#17 5.178 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.178 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 5.178 [javac] ^
#17 5.178 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.178 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 5.178 [javac] ^
#17 5.178 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.178 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 5.179 [javac] ^
#17 5.179 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 5.179 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 5.179 [javac] ^
#17 5.279 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 5.279 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 5.279 [javac] ^
#17 5.279 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 5.279 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 5.279 [javac] ^
#17 5.380 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:791: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.380 [javac] public void setCoreIndex(int no) {
#17 5.380 [javac] ^
#17 5.380 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.380 [javac] public int getCoreIndex() {
#17 5.380 [javac] ^
#17 5.380 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:801: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.380 [javac] public int coreIndexToSeries(int index) {
#17 5.380 [javac] ^
#17 5.380 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:796: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.380 [javac] public int seriesToCoreIndex(int series) {
#17 5.380 [javac] ^
#17 5.380 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:605: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.380 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.380 [javac] ^
#17 5.380 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:606: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.380 [javac] return getReader().getCoreMetadataList();
#17 5.380 [javac] ^
#17 5.381 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:786: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.381 [javac] return getReader().getCoreIndex();
#17 5.381 [javac] ^
#17 5.381 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:792: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.381 [javac] getReader().setCoreIndex(no);
#17 5.381 [javac] ^
#17 5.381 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:797: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.381 [javac] return getReader().seriesToCoreIndex(series);
#17 5.381 [javac] ^
#17 5.381 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:802: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.381 [javac] return getReader().coreIndexToSeries(index);
#17 5.381 [javac] ^
#17 5.481 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.481 [javac] public void setCoreIndex(int no) {
#17 5.481 [javac] ^
#17 5.482 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.482 [javac] public int getCoreIndex() {
#17 5.482 [javac] ^
#17 5.482 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.482 [javac] public int coreIndexToSeries(int index) {
#17 5.482 [javac] ^
#17 5.482 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.482 [javac] public int seriesToCoreIndex(int series) {
#17 5.482 [javac] ^
#17 5.482 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.482 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.482 [javac] ^
#17 5.482 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.482 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 5.482 [javac] ^
#17 5.482 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.482 [javac] return reader.getCoreIndex();
#17 5.482 [javac] ^
#17 5.482 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.482 [javac] reader.setCoreIndex(no);
#17 5.482 [javac] ^
#17 5.482 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.482 [javac] return reader.seriesToCoreIndex(series);
#17 5.482 [javac] ^
#17 5.483 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.483 [javac] return reader.coreIndexToSeries(index);
#17 5.483 [javac] ^
#17 5.583 [javac] Note: Some input files use unchecked or unsafe operations.
#17 5.583 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 5.583 [javac] 36 warnings
#17 5.649
#17 5.649 formats-api.jar:
#17 5.650 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 5.676 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 5.711 [resolver:install] Using default POM (ome:formats-api:8.6.0-SNAPSHOT)
#17 5.715 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.pom
#17 5.716 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar
#17 5.717 [resolver:install] Installing ome:formats-api:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 5.721 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 5.721
#17 5.721 deps-turbojpeg:
#17 5.721
#17 5.721 jar-turbojpeg:
#17 5.819 [echo] isSnapshot = true
#17 5.961
#17 5.961 init-title:
#17 5.961 [echo] ----------=========== turbojpeg ===========----------
#17 5.961
#17 5.961 init-timestamp:
#17 5.962
#17 5.962 init:
#17 5.962
#17 5.962 copy-resources:
#17 5.962 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 5.963
#17 5.963 compile:
#17 5.973 [resolver:resolve] Resolving artifacts
#17 5.975 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 6.178 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 6.179 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 6.179 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 6.879 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.879 [javac] protected void finalize() throws Throwable {
#17 6.879 [javac] ^
#17 6.879 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.879 [javac] super.finalize();
#17 6.880 [javac] ^
#17 6.918 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.918 [javac] protected void finalize() throws Throwable {
#17 6.918 [javac] ^
#17 6.918 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.918 [javac] super.finalize();
#17 6.918 [javac] ^
#17 6.918 [javac] 5 warnings
#17 6.919
#17 6.919 jar:
#17 6.923 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 7.109 [resolver:install] Using default POM (ome:turbojpeg:8.6.0-SNAPSHOT)
#17 7.117 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.pom
#17 7.118 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar
#17 7.120 [resolver:install] Installing ome:turbojpeg:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 7.123 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 7.124
#17 7.124 deps-formats-bsd:
#17 7.124
#17 7.124 jar-formats-bsd:
#17 7.236 [echo] isSnapshot = true
#17 7.395
#17 7.395 init-title:
#17 7.395 [echo] ----------=========== formats-bsd ===========----------
#17 7.395
#17 7.395 init-timestamp:
#17 7.396
#17 7.396 init:
#17 7.396
#17 7.396 copy-resources:
#17 7.396 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.399 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.400
#17 7.400 compile:
#17 7.629 [resolver:resolve] Resolving artifacts
#17 7.653 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.862 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 7.862 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 7.862 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 9.564 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.564 [javac] core.size() != reader.getCoreMetadataList().size())
#17 9.564 [javac] ^
#17 9.564 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.564 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 9.564 [javac] ^
#17 9.564 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.564 [javac] int n = reader.getCoreMetadataList().size();
#17 9.564 [javac] ^
#17 9.564 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 9.564 [javac] reader.setCoreIndex(coreIndex);
#17 9.564 [javac] ^
#17 9.564 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.564 [javac] int n = reader.getCoreMetadataList().size();
#17 9.564 [javac] ^
#17 9.564 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.564 [javac] int n = reader.getCoreMetadataList().size();
#17 9.564 [javac] ^
#17 9.564 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 9.564 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 9.565 [javac] ^
#17 9.565 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.565 [javac] int n = reader.getCoreMetadataList().size();
#17 9.565 [javac] ^
#17 9.565 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 9.565 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 9.565 [javac] ^
#17 9.565 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.565 [javac] int n = reader.getCoreMetadataList().size();
#17 9.565 [javac] ^
#17 9.565 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 9.565 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 9.565 [javac] ^
#17 9.565 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 9.565 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 9.565 [javac] ^
#17 9.565 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 9.565 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 9.565 [javac] ^
#17 9.666 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.666 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 9.666 [javac] ^
#17 9.666 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.666 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 9.666 [javac] ^
#17 9.666 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.666 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 9.666 [javac] ^
#17 9.666 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.666 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 9.666 [javac] ^
#17 9.666 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.666 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 9.666 [javac] ^
#17 9.666 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.666 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 9.666 [javac] ^
#17 9.767 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.767 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 9.767 [javac] ^
#17 9.767 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:70: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.767 [javac] public static final String STABLE_VERSION = "6.6.0";
#17 9.767 [javac] ^
#17 9.767 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:101: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.767 [javac] public static final String OLD_TOOLS = "loci_tools.jar";
#17 9.767 [javac] ^
#17 9.767 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 9.767 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 9.767 [javac] ^
#17 9.767 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 9.767 [javac] URL url = new URL(urlPath);
#17 9.767 [javac] ^
#17 9.868 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitBuffer.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.868 [javac] public class BitBuffer {
#17 9.868 [javac] ^
#17 9.868 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitWriter.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.868 [javac] public class BitWriter {
#17 9.868 [javac] ^
#17 9.968 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 9.968 [javac] BitWriter out = new BitWriter();
#17 9.968 [javac] ^
#17 9.968 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 9.968 [javac] BitWriter out = new BitWriter();
#17 9.968 [javac] ^
#17 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:534: warning: [deprecation] Double(String) in Double has been deprecated
#17 10.07 [javac] return new Double(v);
#17 10.07 [javac] ^
#17 10.67 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2156: warning: [deprecation] Double(String) in Double has been deprecated
#17 10.67 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 10.67 [javac] ^
#17 10.67 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2163: warning: [deprecation] Double(String) in Double has been deprecated
#17 10.67 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 10.67 [javac] ^
#17 10.67 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2170: warning: [deprecation] Double(double) in Double has been deprecated
#17 10.67 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 10.67 [javac] ^
#17 10.77 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#17 10.77 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 10.77 [javac] ^
#17 10.97 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.97 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 10.97 [javac] ^
#17 10.97 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1376: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 10.97 [javac] public MetadataStore getMetadataStoreForDisplay() {
#17 10.97 [javac] ^
#17 10.97 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1394: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 10.97 [javac] public MetadataStore getMetadataStoreForConversion() {
#17 10.97 [javac] ^
#17 11.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 11.07 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 11.07 [javac] ^
#17 11.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [deprecation] Double(double) in Double has been deprecated
#17 11.07 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 11.07 [javac] ^
#17 11.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.17 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 11.17 [javac] ^
#17 11.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 11.17 [javac] protected ReflectedUniverse r;
#17 11.17 [javac] ^
#17 11.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 11.17 [javac] r = new ReflectedUniverse();
#17 11.17 [javac] ^
#17 11.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1044: warning: [deprecation] NM in UNITS has been deprecated
#17 11.17 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 11.17 [javac] ^
#17 11.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1076: warning: [deprecation] MM in UNITS has been deprecated
#17 11.17 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 11.17 [javac] ^
#17 11.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 11.17 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 11.17 [javac] ^
#17 11.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1091: warning: [deprecation] MM in UNITS has been deprecated
#17 11.17 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 11.17 [javac] ^
#17 11.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#17 11.17 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 11.17 [javac] ^
#17 11.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1116: warning: [deprecation] MM in UNITS has been deprecated
#17 11.17 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 11.17 [javac] ^
#17 11.17 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1122: warning: [deprecation] MM in UNITS has been deprecated
#17 11.17 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 11.17 [javac] ^
#17 11.27 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#17 11.27 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 11.27 [javac] ^
#17 11.27 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1175: warning: [deprecation] MM in UNITS has been deprecated
#17 11.27 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 11.27 [javac] ^
#17 11.27 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Integer(int) in Integer has been deprecated
#17 11.27 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 11.27 [javac] ^
#17 11.27 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Long(long) in Long has been deprecated
#17 11.27 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 11.27 [javac] ^
#17 11.27 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Integer(int) in Integer has been deprecated
#17 11.27 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 11.27 [javac] ^
#17 11.27 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Long(long) in Long has been deprecated
#17 11.27 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 11.27 [javac] ^
#17 11.37 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 11.37 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 11.37 [javac] ^
#17 11.37 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:324: warning: [deprecation] Double(double) in Double has been deprecated
#17 11.37 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 11.37 [javac] ^
#17 11.37 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:346: warning: [deprecation] Double(double) in Double has been deprecated
#17 11.37 [javac] result[i] = new Double(readNumber().doubleValue());
#17 11.37 [javac] ^
#17 11.42 [javac] Note: Some input files use unchecked or unsafe operations.
#17 11.42 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 11.42 [javac] 58 warnings
#17 11.42
#17 11.42 formats-bsd.jar:
#17 11.43 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 11.55 [resolver:install] Using default POM (ome:formats-bsd:8.6.0-SNAPSHOT)
#17 11.55 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.pom
#17 11.55 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar
#17 11.55 [resolver:install] Installing ome:formats-bsd:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 11.56 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 11.56
#17 11.56 deps-formats-gpl:
#17 11.56
#17 11.56 jar-formats-gpl:
#17 11.66 [echo] isSnapshot = true
#17 11.80
#17 11.80 init-title:
#17 11.80 [echo] ----------=========== formats-gpl ===========----------
#17 11.80
#17 11.80 init-timestamp:
#17 11.80
#17 11.80 init:
#17 11.80
#17 11.80 copy-resources:
#17 11.80 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 11.80 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 11.80
#17 11.80 compile:
#17 12.05 [resolver:resolve] Resolving artifacts
#17 12.07 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 12.28 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 12.28 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 12.28 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 15.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1325: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 15.58 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 15.58 [javac] ^
#17 15.58 [javac] cast to Object for a varargs call
#17 15.58 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 15.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.68 [javac] BitWriter bits = null;
#17 15.68 [javac] ^
#17 15.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.68 [javac] bits = new BitWriter(planes[index].length / 8);
#17 15.68 [javac] ^
#17 15.98 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 15.98 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 15.98 [javac] ^
#17 16.38 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 16.38 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 16.38 [javac] ^
#17 16.38 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 16.38 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 16.38 [javac] ^
#17 16.38 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.38 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.38 [javac] ^
#17 16.38 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.38 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.38 [javac] ^
#17 16.67 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 16.67 [javac] Variable variable = group.findVariable(variableName);
#17 16.67 [javac] ^
#17 16.67 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 16.67 [javac] Variable variable = group.findVariable(variableName);
#17 16.67 [javac] ^
#17 16.67 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 16.67 [javac] List<Attribute> attributes = variable.getAttributes();
#17 16.67 [javac] ^
#17 16.67 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 16.67 [javac] String groupName = group.getName();
#17 16.67 [javac] ^
#17 16.67 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 16.67 [javac] List<Attribute> attributes = group.getAttributes();
#17 16.67 [javac] ^
#17 16.67 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 16.67 [javac] String variableName = variable.getName();
#17 16.67 [javac] ^
#17 16.67 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 16.67 [javac] Group nextParent = parent.findGroup(token);
#17 16.67 [javac] ^
#17 16.67 [javac] Note: Some input files use unchecked or unsafe operations.
#17 16.67 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 16.67 [javac] 16 warnings
#17 16.67
#17 16.67 formats-gpl.jar:
#17 16.68 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 16.83 [resolver:install] Using default POM (ome:formats-gpl:8.6.0-SNAPSHOT)
#17 16.83 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.pom
#17 16.83 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar
#17 16.83 [resolver:install] Installing ome:formats-gpl:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 16.84 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 16.84
#17 16.84 deps-bio-formats-plugins:
#17 16.84
#17 16.84 jar-bio-formats-plugins:
#17 16.93 [echo] isSnapshot = true
#17 17.07
#17 17.07 init-title:
#17 17.07 [echo] ----------=========== bio-formats_plugins ===========----------
#17 17.07
#17 17.07 init-timestamp:
#17 17.07
#17 17.07 init:
#17 17.07
#17 17.07 copy-resources:
#17 17.07 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.07 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.07
#17 17.07 compile:
#17 17.33 [resolver:resolve] Resolving artifacts
#17 17.34 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.55 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 17.55 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 17.55 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 18.95 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 18.95 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 18.95 [javac] ^
#17 19.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 19.05 [javac] URL url = new URL(urlPath);
#17 19.05 [javac] ^
#17 19.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.05 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.05 [javac] ^
#17 19.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.05 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.05 [javac] ^
#17 19.15 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.15 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.15 [javac] ^
#17 19.15 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.15 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.15 [javac] ^
#17 19.35 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 19.35 [javac] url = new URL(path);
#17 19.35 [javac] ^
#17 19.53 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 19.53 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 19.53 [javac] 8 warnings
#17 19.53
#17 19.53 bio-formats-plugins.jar:
#17 19.53 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 19.56 [resolver:install] Using default POM (ome:bio-formats_plugins:8.6.0-SNAPSHOT)
#17 19.57 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.pom
#17 19.57 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar
#17 19.57 [resolver:install] Installing ome:bio-formats_plugins:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 19.57 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 19.57
#17 19.57 deps-bio-formats-tools:
#17 19.57
#17 19.57 jar-bio-formats-tools:
#17 19.66 [echo] isSnapshot = true
#17 19.82
#17 19.82 init-title:
#17 19.82 [echo] ----------=========== bio-formats-tools ===========----------
#17 19.82
#17 19.82 init-timestamp:
#17 19.82
#17 19.82 init:
#17 19.82
#17 19.82 copy-resources:
#17 19.82 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 19.82
#17 19.82 compile:
#17 20.07 [resolver:resolve] Resolving artifacts
#17 20.08 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 20.29 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 20.29 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 20.29 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 21.45 [javac] 1 warning
#17 21.45
#17 21.45 bio-formats-tools.jar:
#17 21.45 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 21.46 [resolver:install] Using default POM (ome:bio-formats-tools:8.6.0-SNAPSHOT)
#17 21.46 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.pom
#17 21.46 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar
#17 21.46 [resolver:install] Installing ome:bio-formats-tools:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 21.46 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 21.47
#17 21.47 deps-tests:
#17 21.47
#17 21.47 jar-tests:
#17 21.55 [echo] isSnapshot = true
#17 21.68
#17 21.68 init-title:
#17 21.68 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 21.68
#17 21.68 init-timestamp:
#17 21.68
#17 21.68 init:
#17 21.68
#17 21.68 copy-resources:
#17 21.68 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 21.68
#17 21.68 compile:
#17 22.08 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.51 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.89 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.91 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.18 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.63 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 23.65 [resolver:resolve] Resolving artifacts
#17 23.66 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 23.89 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.23 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.24 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.51 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.90 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 24.90 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 25.11 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 25.11 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 25.11 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 26.21 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.21 [javac] int index = unflattenedReader.getCoreIndex();
#17 26.21 [javac] ^
#17 26.21 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 26.21 [javac] reader.setCoreIndex(index);
#17 26.21 [javac] ^
#17 26.41 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.41 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 26.41 [javac] ^
#17 26.41 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.41 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 26.41 [javac] ^
#17 26.71 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 26.71 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 26.71 [javac] ^
#17 26.71 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 26.71 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 26.71 [javac] ^
#17 26.71 [javac] Note: Some input files use unchecked or unsafe operations.
#17 26.71 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 26.71 [javac] 7 warnings
#17 26.71
#17 26.71 tests.jar:
#17 26.71 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 26.73 [resolver:install] Using default POM (ome:test-suite:8.6.0-SNAPSHOT)
#17 26.73 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.pom
#17 26.73 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.jar
#17 26.73 [resolver:install] Installing ome:test-suite:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 26.74 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 26.74
#17 26.74 jars:
#17 26.74
#17 26.74 copy-jars:
#17 26.74
#17 26.74 deps-formats-api:
#17 26.79 [echo] isSnapshot = true
#17 26.83
#17 26.83 install-pom:
#17 26.97 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/pom-bio-formats-8.6.0-SNAPSHOT.pom
#17 26.97 [resolver:install] Installing ome:pom-bio-formats:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 26.97 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 26.97
#17 26.97 jar-formats-api:
#17 27.06 [echo] isSnapshot = true
#17 27.19
#17 27.19 init-title:
#17 27.19 [echo] ----------=========== formats-api ===========----------
#17 27.19
#17 27.19 init-timestamp:
#17 27.19
#17 27.19 init:
#17 27.19
#17 27.19 copy-resources:
#17 27.19
#17 27.19 compile:
#17 27.32 [resolver:resolve] Resolving artifacts
#17 27.32
#17 27.32 formats-api.jar:
#17 27.34 [resolver:install] Using default POM (ome:formats-api:8.6.0-SNAPSHOT)
#17 27.35 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.pom
#17 27.35 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar
#17 27.35 [resolver:install] Installing ome:formats-api:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 27.35 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 27.35
#17 27.35 deps-turbojpeg:
#17 27.35
#17 27.35 jar-turbojpeg:
#17 27.44 [echo] isSnapshot = true
#17 27.59
#17 27.59 init-title:
#17 27.59 [echo] ----------=========== turbojpeg ===========----------
#17 27.59
#17 27.59 init-timestamp:
#17 27.59
#17 27.59 init:
#17 27.59
#17 27.59 copy-resources:
#17 27.59
#17 27.59 compile:
#17 27.60 [resolver:resolve] Resolving artifacts
#17 27.60
#17 27.60 jar:
#17 27.61 [resolver:install] Using default POM (ome:turbojpeg:8.6.0-SNAPSHOT)
#17 27.62 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.pom
#17 27.62 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar
#17 27.62 [resolver:install] Installing ome:turbojpeg:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 27.62 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 27.62
#17 27.62 deps-formats-bsd:
#17 27.62
#17 27.62 jar-formats-bsd:
#17 27.71 [echo] isSnapshot = true
#17 27.84
#17 27.84 init-title:
#17 27.84 [echo] ----------=========== formats-bsd ===========----------
#17 27.84
#17 27.84 init-timestamp:
#17 27.84
#17 27.84 init:
#17 27.84
#17 27.84 copy-resources:
#17 27.84
#17 27.84 compile:
#17 28.03 [resolver:resolve] Resolving artifacts
#17 28.04
#17 28.04 formats-bsd.jar:
#17 28.08 [resolver:install] Using default POM (ome:formats-bsd:8.6.0-SNAPSHOT)
#17 28.08 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.pom
#17 28.08 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar
#17 28.08 [resolver:install] Installing ome:formats-bsd:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 28.08 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 28.08
#17 28.08 deps-formats-gpl:
#17 28.08
#17 28.08 jar-formats-gpl:
#17 28.17 [echo] isSnapshot = true
#17 28.29
#17 28.29 init-title:
#17 28.29 [echo] ----------=========== formats-gpl ===========----------
#17 28.29
#17 28.29 init-timestamp:
#17 28.29
#17 28.29 init:
#17 28.29
#17 28.29 copy-resources:
#17 28.29
#17 28.29 compile:
#17 28.53 [resolver:resolve] Resolving artifacts
#17 28.55
#17 28.55 formats-gpl.jar:
#17 28.58 [resolver:install] Using default POM (ome:formats-gpl:8.6.0-SNAPSHOT)
#17 28.58 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.pom
#17 28.59 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar
#17 28.59 [resolver:install] Installing ome:formats-gpl:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 28.59 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 28.59
#17 28.59 deps-bio-formats-plugins:
#17 28.59
#17 28.59 jar-bio-formats-plugins:
#17 28.67 [echo] isSnapshot = true
#17 28.79
#17 28.79 init-title:
#17 28.79 [echo] ----------=========== bio-formats_plugins ===========----------
#17 28.79
#17 28.79 init-timestamp:
#17 28.79
#17 28.79 init:
#17 28.79
#17 28.79 copy-resources:
#17 28.79
#17 28.79 compile:
#17 29.05 [resolver:resolve] Resolving artifacts
#17 29.06
#17 29.06 bio-formats-plugins.jar:
#17 29.07 [resolver:install] Using default POM (ome:bio-formats_plugins:8.6.0-SNAPSHOT)
#17 29.08 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.pom
#17 29.08 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar
#17 29.08 [resolver:install] Installing ome:bio-formats_plugins:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 29.08 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 29.08
#17 29.08 deps-bio-formats-tools:
#17 29.08
#17 29.08 jar-bio-formats-tools:
#17 29.17 [echo] isSnapshot = true
#17 29.29
#17 29.29 init-title:
#17 29.29 [echo] ----------=========== bio-formats-tools ===========----------
#17 29.29
#17 29.29 init-timestamp:
#17 29.29
#17 29.29 init:
#17 29.29
#17 29.29 copy-resources:
#17 29.30
#17 29.30 compile:
#17 29.54 [resolver:resolve] Resolving artifacts
#17 29.55
#17 29.55 bio-formats-tools.jar:
#17 29.55 [resolver:install] Using default POM (ome:bio-formats-tools:8.6.0-SNAPSHOT)
#17 29.56 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.pom
#17 29.56 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar
#17 29.56 [resolver:install] Installing ome:bio-formats-tools:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 29.56 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 29.56
#17 29.56 deps-tests:
#17 29.56
#17 29.56 jar-tests:
#17 29.66 [echo] isSnapshot = true
#17 29.80
#17 29.80 init-title:
#17 29.80 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 29.80
#17 29.80 init-timestamp:
#17 29.80
#17 29.80 init:
#17 29.80
#17 29.80 copy-resources:
#17 29.80
#17 29.80 compile:
#17 30.05 [resolver:resolve] Resolving artifacts
#17 30.06
#17 30.06 tests.jar:
#17 30.07 [resolver:install] Using default POM (ome:test-suite:8.6.0-SNAPSHOT)
#17 30.07 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.pom
#17 30.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.jar
#17 30.07 [resolver:install] Installing ome:test-suite:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 30.08 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 30.08
#17 30.08 jars:
#17 30.08
#17 30.08 tools:
#17 30.08 [echo] ----------=========== bioformats_package ===========----------
#17 30.16 [echo] isSnapshot = true
#17 30.29
#17 30.29 init-timestamp:
#17 30.29
#17 30.29 bundle:
#17 30.54 [resolver:resolve] Resolving artifacts
#17 30.55 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.58 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.3.0/ome-common-6.3.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.60 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.62 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.63 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.68 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.70 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.75 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.76 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.97 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.02 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.03 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.09 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.10 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.11 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.11 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.27 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.75 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.75 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.75 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.76 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.84 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.85 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.85 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.6.0/ome-xml-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.91 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.6.0/specification-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.97 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.98 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.2.0/ome-codecs-1.2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.99 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5/ome-jai-0.1.5.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.12 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/2.0.3/aircompressor-2.0.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.15 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.22 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.26 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.26 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.36 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.38 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.79 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.83 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.86 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.95 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.97 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.99 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.99 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.21 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.27 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.33 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.42 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.4.0/ome-mdbtools-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.44 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.4.0/metakit-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.44 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.4.0/ome-poi-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.56 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.57 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.10.0/cdm-core-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.01 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.10.0/httpservices-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.02 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.14/httpclient-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.13 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.18 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.14/httpmime-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.18 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-math3/3.6.1/commons-math3-3.6.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.49 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.8/re2j-1.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.50 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.84 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.85 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.86 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.18/slf4j-api-2.0.18.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.87 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.88 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.91 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.28 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.5.37/logback-core-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.39 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.5.37/logback-classic-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.83 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 42.80 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 43.42 [resolver:install] Using default POM (ome:bioformats_package:8.6.0-SNAPSHOT)
#17 43.42 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/bioformats_package-8.6.0-SNAPSHOT.pom
#17 43.42 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/bioformats_package-8.6.0-SNAPSHOT.jar
#17 43.46 [resolver:install] Installing ome:bioformats_package:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 43.47 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 43.48
#17 43.48 BUILD SUCCESSFUL
#17 43.48 Total time: 43 seconds
#17 DONE 44.2s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.1s
#19 exporting to image
#19 exporting layers
#19 exporting layers 3.5s done
#19 writing image sha256:5f8d8bd050a0d03eec3e969f5e5afdd41538a675d056874aa5bf1ca569b9fe5c done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 3.6s
WARNING: current commit information was not captured by the build: failed to read current commit information with git rev-parse --is-inside-work-tree
Finished: SUCCESS
