Console Output

Skipping 2,097 KB.. Full Log
#14 386.2 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/jcl-over-slf4j/1.7.7/jcl-over-slf4j-1.7.7.jar
#14 386.2 Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jaxrs/jackson-jaxrs-base/2.3.1/jackson-jaxrs-base-2.3.1.jar (28 kB at 107 kB/s)
#14 386.2 Progress (3): 914 kB | 430/591 kB | 175/282 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/spice/zapper/spice-zapper/1.3/spice-zapper-1.3.jar
#14 386.2 Progress (3): 914 kB | 434/591 kB | 183/282 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.1/jackson-databind-2.3.1.jar (914 kB at 3.5 MB/s)
#14 386.2 Progress (2): 552/591 kB | 282 kB
                                 
Downloading from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf-proto/1.9/hawtbuf-proto-1.9.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar (282 kB at 1.0 MB/s)
#14 386.2 Downloading from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf/1.9/hawtbuf-1.9.jar
#14 386.2 Progress (2): 591 kB | 4.1/27 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.3.5/httpclient-4.3.5.jar (591 kB at 2.1 MB/s)
#14 386.2 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.8/plexus-utils-3.0.8.jar
#14 386.2 Progress (2): 27 kB | 4.1/17 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf-proto/1.9/hawtbuf-proto-1.9.jar (27 kB at 94 kB/s)
#14 386.2 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.15/plexus-interpolation-1.15.jar
#14 386.2 Progress (3): 17 kB | 121 kB | 25/50 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/slf4j/jcl-over-slf4j/1.7.7/jcl-over-slf4j-1.7.7.jar (17 kB at 55 kB/s)
#14 386.2 Progress (3): 121 kB | 50 kB | 217/232 kB
                                         
Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/aether/aether-api/1.13.1/aether-api-1.13.1.jar
#14 386.2 Progress (3): 121 kB | 50 kB | 221/232 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/spice/zapper/spice-zapper/1.3/spice-zapper-1.3.jar (121 kB at 405 kB/s)
#14 386.2 Downloading from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.1.2/logback-core-1.1.2.jar
#14 386.2 Progress (3): 50 kB | 232 kB | 4.1/60 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf/1.9/hawtbuf-1.9.jar (50 kB at 166 kB/s)
#14 386.2 Progress (2): 232 kB | 37/60 kB
                               
Downloading from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.1.2/logback-classic-1.1.2.jar
#14 386.2 Progress (2): 232 kB | 41/60 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.8/plexus-utils-3.0.8.jar (232 kB at 743 kB/s)
#14 386.2 Progress (2): 60 kB | 16/90 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.15/plexus-interpolation-1.15.jar (60 kB at 192 kB/s)
#14 386.2 Progress (2): 81/90 kB | 70/428 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.7/maven-settings-2.0.7.jar (49 kB at 1.6 MB/s)
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.7/maven-plugin-parameter-documenter-2.0.7.jar
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#14 388.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.jar
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#14 388.7 Progress (2): 0.4/1.8 MB | 21 kB
                                
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#14 388.7 Progress (3): 0.7/1.8 MB | 35 kB | 20/86 kB
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#14 388.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.7/maven-error-diagnostics-2.0.7.jar
#14 388.7 Progress (4): 0.8/1.8 MB | 35 kB | 88 kB | 24 kB
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#14 388.7 Progress (3): 0.9/1.8 MB | 88 kB | 24 kB
                                        
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#14 388.7 Progress (3): 0.9/1.8 MB | 88 kB | 24 kB
                                        
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#14 388.7 Progress (2): 0.9/1.8 MB | 24 kB
                                
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#14 388.7 Progress (2): 0.9/1.8 MB | 24 kB
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#14 388.7 Downloading from central: https://repo.maven.apache.org/maven2/commons-cli/commons-cli/1.0/commons-cli-1.0.jar
#14 388.7 Progress (2): 1.1/1.8 MB | 4.1/14 kB
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#14 388.7 Progress (4): 1.2/1.8 MB | 117 kB | 29 kB | 30 kB
                                                 
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#14 388.7 Progress (4): 1.2/1.8 MB | 117 kB | 29 kB | 30 kB
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#14 388.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.7/maven-project-2.0.7.jar (117 kB at 1.0 MB/s)
#14 388.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-descriptor/2.0.7/maven-plugin-descriptor-2.0.7.jar
#14 388.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.7/maven-artifact-manager-2.0.7.jar
#14 388.7 Progress (3): 1.3/1.8 MB | 29 kB | 4.1/13 kB
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#14 388.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-monitor/2.0.7/maven-monitor-2.0.7.jar
#14 388.8 Progress (2): 1.4/1.8 MB | 13 kB
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#14 388.8 [output clipped, log limit 2MiB reached]
#14 481.0 SLF4J: No SLF4J providers were found.
#14 481.0 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 481.0 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 493.5s

#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s

#16 [12/13] RUN ant jars tools
#16 0.777 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.658      [echo] isSnapshot = true
#16 3.771 
#16 3.771 copy-jars:
#16 3.771 
#16 3.771 deps-formats-api:
#16 3.866      [echo] isSnapshot = true
#16 3.924 
#16 3.924 install-pom:
#16 4.108 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 4.131 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.135 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 4.137 
#16 4.137 jar-formats-api:
#16 4.250      [echo] isSnapshot = true
#16 4.436 
#16 4.436 init-title:
#16 4.436      [echo] ----------=========== formats-api ===========----------
#16 4.437 
#16 4.437 init-timestamp:
#16 4.443 
#16 4.443 init:
#16 4.443 
#16 4.443 copy-resources:
#16 4.444     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.457      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.460 
#16 4.460 compile:
#16 4.646 [resolver:resolve] Resolving artifacts
#16 4.676     [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.972     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.673     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.673     [javac] import loci.common.ReflectedUniverse;
#16 5.673     [javac]                   ^
#16 5.874     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.874     [javac]     int currentIndex = r.getCoreIndex();
#16 5.874     [javac]                         ^
#16 5.874     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.874     [javac]     r.setCoreIndex(coreIndex);
#16 5.874     [javac]      ^
#16 5.874     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.875     [javac]     r.setCoreIndex(currentIndex);
#16 5.875     [javac]      ^
#16 5.975     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.975     [javac]   public void setCoreIndex(int no) {
#16 5.975     [javac]               ^
#16 5.975     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.975     [javac]   public int getCoreIndex() {
#16 5.976     [javac]              ^
#16 5.976     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.976     [javac]   public int coreIndexToSeries(int index)
#16 5.976     [javac]              ^
#16 5.976     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.976     [javac]   public int seriesToCoreIndex(int series)
#16 5.976     [javac]              ^
#16 5.976     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.976     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 5.976     [javac]                             ^
#16 6.077     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.077     [javac]     if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 6.077     [javac]                                              ^
#16 6.077     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.077     [javac]     if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 6.077     [javac]                                              ^
#16 6.078     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.078     [javac]       core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 6.078     [javac]                                                      ^
#16 6.078     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.078     [javac]       core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 6.078     [javac]                                                      ^
#16 6.179     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.179     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 6.179     [javac]     ^
#16 6.179     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.179     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 6.179     [javac]                               ^
#16 6.280     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.280     [javac]   public void setCoreIndex(int no) {
#16 6.280     [javac]               ^
#16 6.280     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.280     [javac]   public int getCoreIndex() {
#16 6.280     [javac]              ^
#16 6.280     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.280     [javac]   public int coreIndexToSeries(int index) {
#16 6.280     [javac]              ^
#16 6.280     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.280     [javac]   public int seriesToCoreIndex(int series) {
#16 6.281     [javac]              ^
#16 6.281     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.281     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 6.281     [javac]                             ^
#16 6.281     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.281     [javac]     return getReader().getCoreMetadataList();
#16 6.281     [javac]                       ^
#16 6.281     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.281     [javac]     return getReader().getCoreIndex();
#16 6.281     [javac]                       ^
#16 6.281     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.281     [javac]     getReader().setCoreIndex(no);
#16 6.282     [javac]                ^
#16 6.282     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.282     [javac]     return getReader().seriesToCoreIndex(series);
#16 6.282     [javac]                       ^
#16 6.282     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.282     [javac]     return getReader().coreIndexToSeries(index);
#16 6.282     [javac]                       ^
#16 6.282     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.282     [javac]   public void setCoreIndex(int no) {
#16 6.282     [javac]               ^
#16 6.282     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.282     [javac]   public int getCoreIndex() {
#16 6.282     [javac]              ^
#16 6.283     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.283     [javac]   public int coreIndexToSeries(int index) {
#16 6.283     [javac]              ^
#16 6.283     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.283     [javac]   public int seriesToCoreIndex(int series) {
#16 6.283     [javac]              ^
#16 6.283     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.283     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 6.283     [javac]                             ^
#16 6.283     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.283     [javac]     List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.283     [javac]                                        ^
#16 6.284     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.284     [javac]     return reader.getCoreIndex();
#16 6.284     [javac]                  ^
#16 6.284     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.284     [javac]     reader.setCoreIndex(no);
#16 6.284     [javac]           ^
#16 6.284     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.284     [javac]     return reader.seriesToCoreIndex(series);
#16 6.284     [javac]                  ^
#16 6.284     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.284     [javac]     return reader.coreIndexToSeries(index);
#16 6.284     [javac]                  ^
#16 6.485     [javac] Note: Some input files use unchecked or unsafe operations.
#16 6.485     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 6.485     [javac] 36 warnings
#16 6.530 
#16 6.530 formats-api.jar:
#16 6.531     [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 6.555       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 6.587 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 6.591 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 6.605 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 6.607 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.609 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 6.610 
#16 6.610 deps-turbojpeg:
#16 6.610 
#16 6.610 jar-turbojpeg:
#16 6.712      [echo] isSnapshot = true
#16 6.895 
#16 6.895 init-title:
#16 6.895      [echo] ----------=========== turbojpeg ===========----------
#16 6.895 
#16 6.895 init-timestamp:
#16 6.895 
#16 6.895 init:
#16 6.896 
#16 6.896 copy-resources:
#16 6.896     [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.897 
#16 6.897 compile:
#16 6.907 [resolver:resolve] Resolving artifacts
#16 6.911     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 7.114     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.714     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 7.714     [javac]   protected void finalize() throws Throwable {
#16 7.714     [javac]                  ^
#16 7.714     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 7.714     [javac]       super.finalize();
#16 7.714     [javac]            ^
#16 7.715     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 7.715     [javac]   protected void finalize() throws Throwable {
#16 7.715     [javac]                  ^
#16 7.715     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 7.715     [javac]       super.finalize();
#16 7.715     [javac]            ^
#16 7.795     [javac] 5 warnings
#16 7.796 
#16 7.796 jar:
#16 7.801       [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 7.987 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 7.994 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 8.009 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 8.011 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 8.015 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 8.016 
#16 8.016 deps-formats-bsd:
#16 8.016 
#16 8.016 jar-formats-bsd:
#16 8.120      [echo] isSnapshot = true
#16 8.277 
#16 8.277 init-title:
#16 8.277      [echo] ----------=========== formats-bsd ===========----------
#16 8.277 
#16 8.277 init-timestamp:
#16 8.277 
#16 8.277 init:
#16 8.277 
#16 8.277 copy-resources:
#16 8.278     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.280      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.282 
#16 8.282 compile:
#16 8.501 [resolver:resolve] Resolving artifacts
#16 8.529     [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.837     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 9.938     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.938     [javac] import loci.common.ReflectedUniverse;
#16 9.938     [javac]                   ^
#16 10.24     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.24     [javac]       core.size() != reader.getCoreMetadataList().size())
#16 10.24     [javac]                            ^
#16 10.24     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.24     [javac]       List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 10.24     [javac]                                          ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.34     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.34     [javac]                   ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.34     [javac]     reader.setCoreIndex(coreIndex);
#16 10.34     [javac]           ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.34     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.34     [javac]                   ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.34     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.34     [javac]                   ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 10.34     [javac]     if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 10.34     [javac]                                         ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.34     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.34     [javac]                   ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 10.34     [javac]     if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 10.34     [javac]                                         ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.34     [javac]     int n = reader.getCoreMetadataList().size();
#16 10.34     [javac]                   ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.34     [javac]     if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 10.34     [javac]                                  ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.34     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.34     [javac]                  ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.34     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.34     [javac]                                              ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.34     [javac]     return noStitch ? reader.getCoreMetadataList() : core;
#16 10.34     [javac]                             ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.34     [javac]     if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 10.34     [javac]               ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.34     [javac]       seriesCount = reader.getCoreMetadataList().size();
#16 10.34     [javac]                           ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.34     [javac]       if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 10.34     [javac]                 ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.34     [javac]     if (reader.getCoreMetadataList().size() > 1) return 0;
#16 10.34     [javac]               ^
#16 10.34     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.34     [javac]       r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 10.34     [javac]                            ^
#16 10.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.44     [javac]     int seriesCount = unwrap().getCoreMetadataList().size();
#16 10.44     [javac]                               ^
#16 10.54     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.54     [javac]     BitWriter out = new BitWriter();
#16 10.54     [javac]     ^
#16 10.54     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.54     [javac]     BitWriter out = new BitWriter();
#16 10.54     [javac]                         ^
#16 10.64     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [deprecation] Double(String) in Double has been deprecated
#16 10.64     [javac]       return new Double(v);
#16 10.64     [javac]              ^
#16 11.24     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [deprecation] Double(String) in Double has been deprecated
#16 11.24     [javac]     return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 11.24     [javac]                                         ^
#16 11.24     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [deprecation] Double(String) in Double has been deprecated
#16 11.24     [javac]     return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 11.24     [javac]                                         ^
#16 11.24     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [deprecation] Double(double) in Double has been deprecated
#16 11.24     [javac]     return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 11.24     [javac]                                         ^
#16 11.44     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 11.44     [javac]                channelNames.put(new Integer(channelNames.size()), value);
#16 11.44     [javac]                                 ^
#16 11.64     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.64     [javac]       OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 11.64     [javac]                                                                    ^
#16 11.64     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 11.64     [javac]     StreamTokenizer st = new StreamTokenizer(in);
#16 11.64     [javac]                          ^
#16 11.74     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.74     [javac]     core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 11.74     [javac]                                                    ^
#16 11.74     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.74     [javac]   protected ReflectedUniverse r;
#16 11.74     [javac]             ^
#16 11.74     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.74     [javac]       r = new ReflectedUniverse();
#16 11.74     [javac]               ^
#16 11.84     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1030: warning: [deprecation] NM in UNITS has been deprecated
#16 11.84     [javac]           wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 11.84     [javac]                                                                               ^
#16 11.84     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1062: warning: [deprecation] MM in UNITS has been deprecated
#16 11.84     [javac]           sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 11.84     [javac]                                                                                ^
#16 11.84     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 11.84     [javac]         String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 11.84     [javac]                                                                                   ^
#16 11.84     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1076: warning: [deprecation] MM in UNITS has been deprecated
#16 11.84     [javac]         String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 11.84     [javac]                                                                                   ^
#16 11.84     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1095: warning: [deprecation] MM in UNITS has been deprecated
#16 11.84     [javac]         volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 11.84     [javac]                                                                                        ^
#16 11.84     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1099: warning: [deprecation] MM in UNITS has been deprecated
#16 11.84     [javac]         volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 11.84     [javac]                                                                                         ^
#16 11.84     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1105: warning: [deprecation] MM in UNITS has been deprecated
#16 11.84     [javac]         volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 11.84     [javac]                                                                                        ^
#16 11.84     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1153: warning: [deprecation] MM in UNITS has been deprecated
#16 11.84     [javac]             offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 11.84     [javac]                                                                                                               ^
#16 11.84     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1157: warning: [deprecation] MM in UNITS has been deprecated
#16 11.84     [javac]             offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 11.84     [javac]                                                                                                               ^
#16 11.84     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 11.84     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 11.84     [javac]               ^
#16 11.84     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Long(long) in Long has been deprecated
#16 11.84     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 11.84     [javac]                                            ^
#16 11.85     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 11.85     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 11.85     [javac]               ^
#16 11.85     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Long(long) in Long has been deprecated
#16 11.85     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 11.85     [javac]                                             ^
#16 11.95     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 11.95     [javac]       libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 11.95     [javac]                                        ^
#16 11.95     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [deprecation] Double(double) in Double has been deprecated
#16 11.95     [javac]         doubleResult[i] = new Double(result.get(i).doubleValue());
#16 11.95     [javac]                           ^
#16 11.95     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [deprecation] Double(double) in Double has been deprecated
#16 11.95     [javac]       result[i] = new Double(readNumber().doubleValue());
#16 11.95     [javac]                   ^
#16 12.00     [javac] Note: Some input files use unchecked or unsafe operations.
#16 12.00     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 12.00     [javac] 50 warnings
#16 12.00 
#16 12.00 formats-bsd.jar:
#16 12.01       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 12.12 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 12.12 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 12.16 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 12.16 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 12.16 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 12.16 
#16 12.16 deps-formats-gpl:
#16 12.17 
#16 12.17 jar-formats-gpl:
#16 12.26      [echo] isSnapshot = true
#16 12.42 
#16 12.42 init-title:
#16 12.42      [echo] ----------=========== formats-gpl ===========----------
#16 12.42 
#16 12.42 init-timestamp:
#16 12.42 
#16 12.42 init:
#16 12.42 
#16 12.42 copy-resources:
#16 12.42     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.42      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.42 
#16 12.42 compile:
#16 12.66 [resolver:resolve] Resolving artifacts
#16 12.88 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.88 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 13.14 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 13.14 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 13.19 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 13.19 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 13.21     [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.52     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 14.62     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.62     [javac] import loci.formats.codec.BitWriter;
#16 14.62     [javac]                          ^
#16 14.72     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.72     [javac] import loci.formats.codec.BitWriter;
#16 14.72     [javac]                          ^
#16 16.42     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 16.42     [javac]       LOGGER.trace("Parsing tokens: {}", tokens);
#16 16.42     [javac]                                          ^
#16 16.42     [javac]   cast to Object for a varargs call
#16 16.42     [javac]   cast to Object[] for a non-varargs call and to suppress this warning
#16 16.52     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.52     [javac]     BitWriter bits = null;
#16 16.52     [javac]     ^
#16 16.52     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.52     [javac]       bits = new BitWriter(planes[index].length / 8);
#16 16.52     [javac]                  ^
#16 16.82     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 16.82     [javac]     CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 16.82     [javac]                                                    ^
#16 17.22     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.22     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.22     [javac]     ^
#16 17.22     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.22     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.22     [javac]                          ^
#16 17.42     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 17.42     [javac]       List<Attribute> attributes = variable.getAttributes();
#16 17.42     [javac]                                            ^
#16 17.42     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.42     [javac]         toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 17.42     [javac]                               ^
#16 17.42     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.42     [javac]       String groupName = group.getName();
#16 17.42     [javac]                               ^
#16 17.42     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 17.42     [javac]       List<Attribute> attributes = group.getAttributes();
#16 17.42     [javac]                                         ^
#16 17.42     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.42     [javac]         String attributeName = attribute.getName();
#16 17.42     [javac]                                         ^
#16 17.42     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.42     [javac]         String variableName = variable.getName();
#16 17.42     [javac]                                       ^
#16 17.42     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 17.42     [javac]     netCDFFile = NetcdfFile.open(currentId);
#16 17.42     [javac]                            ^
#16 17.42     [javac] Note: Some input files use unchecked or unsafe operations.
#16 17.42     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.42     [javac] 16 warnings
#16 17.45 
#16 17.45 formats-gpl.jar:
#16 17.45       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 17.59 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 17.59 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 17.60 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 17.60 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 17.60 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 17.60 
#16 17.60 deps-bio-formats-plugins:
#16 17.60 
#16 17.60 jar-bio-formats-plugins:
#16 17.70      [echo] isSnapshot = true
#16 17.87 
#16 17.87 init-title:
#16 17.87      [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.87 
#16 17.87 init-timestamp:
#16 17.87 
#16 17.87 init:
#16 17.87 
#16 17.87 copy-resources:
#16 17.87     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.87      [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.87 
#16 17.87 compile:
#16 18.14 [resolver:resolve] Resolving artifacts
#16 18.16     [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.46     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.16     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.16     [javac] import loci.common.ReflectedUniverse;
#16 19.16     [javac]                   ^
#16 19.26     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.26     [javac] import loci.common.ReflectedUniverse;
#16 19.26     [javac]                   ^
#16 19.66     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 19.66     [javac]     "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 19.66     [javac]                                      ^
#16 19.76     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.76     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 19.76     [javac]         ^
#16 19.76     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.76     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 19.76     [javac]                                   ^
#16 19.86     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.86     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 19.86     [javac]     ^
#16 19.86     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.86     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 19.86     [javac]                                ^
#16 20.27     [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 20.27     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 20.27     [javac] 8 warnings
#16 20.29 
#16 20.29 bio-formats-plugins.jar:
#16 20.30       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 20.33 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 20.33 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 20.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 20.33 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.34 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 20.34 
#16 20.34 deps-bio-formats-tools:
#16 20.34 
#16 20.34 jar-bio-formats-tools:
#16 20.47      [echo] isSnapshot = true
#16 20.62 
#16 20.62 init-title:
#16 20.62      [echo] ----------=========== bio-formats-tools ===========----------
#16 20.62 
#16 20.62 init-timestamp:
#16 20.62 
#16 20.62 init:
#16 20.62 
#16 20.62 copy-resources:
#16 20.62     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.62 
#16 20.62 compile:
#16 20.88 [resolver:resolve] Resolving artifacts
#16 20.89     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.19     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 22.10     [javac] 1 warning
#16 22.13 
#16 22.13 bio-formats-tools.jar:
#16 22.13       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 22.14 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 22.15 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 22.15 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 22.15 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 22.15 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 22.15 
#16 22.15 deps-tests:
#16 22.15 
#16 22.15 jar-tests:
#16 22.24      [echo] isSnapshot = true
#16 22.40 
#16 22.40 init-title:
#16 22.40      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 22.40 
#16 22.40 init-timestamp:
#16 22.40 
#16 22.40 init:
#16 22.40 
#16 22.40 copy-resources:
#16 22.40     [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.40 
#16 22.40 compile:
#16 22.71 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.79 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.80 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.23 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.70 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 23.76 [resolver:resolve] Resolving artifacts
#16 23.78 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.82 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.83 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.24 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.61 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 24.61     [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 24.92     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 25.82     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.82     [javac]         int index = unflattenedReader.getCoreIndex();
#16 25.82     [javac]                                      ^
#16 25.82     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 25.82     [javac]         reader.setCoreIndex(index);
#16 25.82     [javac]               ^
#16 26.02     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.02     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 26.02     [javac]                                              ^
#16 26.02     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.02     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 26.02     [javac]                                              ^
#16 26.32     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.32     [javac]         FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 26.32     [javac]                                                    ^
#16 26.32     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.32     [javac]         FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 26.32     [javac]                                                    ^
#16 26.32     [javac] Note: Some input files use unchecked or unsafe operations.
#16 26.32     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 26.32     [javac] 7 warnings
#16 26.41 
#16 26.41 tests.jar:
#16 26.42       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 26.43 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 26.43 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 26.44 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 26.44 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.44 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.44 
#16 26.44 jars:
#16 26.44 
#16 26.44 copy-jars:
#16 26.44 
#16 26.44 deps-formats-api:
#16 26.49      [echo] isSnapshot = true
#16 26.54 
#16 26.54 install-pom:
#16 26.68 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 26.68 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.69 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 26.69 
#16 26.69 jar-formats-api:
#16 26.77      [echo] isSnapshot = true
#16 26.96 
#16 26.96 init-title:
#16 26.96      [echo] ----------=========== formats-api ===========----------
#16 26.96 
#16 26.96 init-timestamp:
#16 26.96 
#16 26.96 init:
#16 26.97 
#16 26.97 copy-resources:
#16 26.97 
#16 26.97 compile:
#16 27.11 [resolver:resolve] Resolving artifacts
#16 27.12 
#16 27.12 formats-api.jar:
#16 27.13 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 27.14 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 27.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 27.14 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.14 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 27.14 
#16 27.14 deps-turbojpeg:
#16 27.14 
#16 27.14 jar-turbojpeg:
#16 27.23      [echo] isSnapshot = true
#16 27.37 
#16 27.37 init-title:
#16 27.37      [echo] ----------=========== turbojpeg ===========----------
#16 27.37 
#16 27.37 init-timestamp:
#16 27.38 
#16 27.38 init:
#16 27.38 
#16 27.38 copy-resources:
#16 27.38 
#16 27.38 compile:
#16 27.38 [resolver:resolve] Resolving artifacts
#16 27.39 
#16 27.39 jar:
#16 27.39 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 27.40 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 27.40 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 27.40 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.41 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 27.41 
#16 27.41 deps-formats-bsd:
#16 27.41 
#16 27.41 jar-formats-bsd:
#16 27.49      [echo] isSnapshot = true
#16 27.64 
#16 27.64 init-title:
#16 27.64      [echo] ----------=========== formats-bsd ===========----------
#16 27.64 
#16 27.64 init-timestamp:
#16 27.64 
#16 27.64 init:
#16 27.64 
#16 27.64 copy-resources:
#16 27.64 
#16 27.64 compile:
#16 27.84 [resolver:resolve] Resolving artifacts
#16 27.86 
#16 27.86 formats-bsd.jar:
#16 27.89 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 27.89 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 27.89 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 27.89 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.90 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 27.90 
#16 27.90 deps-formats-gpl:
#16 27.90 
#16 27.90 jar-formats-gpl:
#16 27.98      [echo] isSnapshot = true
#16 28.13 
#16 28.13 init-title:
#16 28.13      [echo] ----------=========== formats-gpl ===========----------
#16 28.13 
#16 28.13 init-timestamp:
#16 28.13 
#16 28.13 init:
#16 28.13 
#16 28.13 copy-resources:
#16 28.13 
#16 28.13 compile:
#16 28.36 [resolver:resolve] Resolving artifacts
#16 28.38 
#16 28.38 formats-gpl.jar:
#16 28.41 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 28.41 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 28.42 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 28.42 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.42 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 28.42 
#16 28.42 deps-bio-formats-plugins:
#16 28.42 
#16 28.42 jar-bio-formats-plugins:
#16 28.50      [echo] isSnapshot = true
#16 28.65 
#16 28.65 init-title:
#16 28.65      [echo] ----------=========== bio-formats_plugins ===========----------
#16 28.65 
#16 28.65 init-timestamp:
#16 28.65 
#16 28.65 init:
#16 28.65 
#16 28.65 copy-resources:
#16 28.65 
#16 28.65 compile:
#16 28.89 [resolver:resolve] Resolving artifacts
#16 28.90 
#16 28.90 bio-formats-plugins.jar:
#16 28.92 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 28.92 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 28.92 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 28.92 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.92 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 28.93 
#16 28.93 deps-bio-formats-tools:
#16 28.93 
#16 28.93 jar-bio-formats-tools:
#16 29.01      [echo] isSnapshot = true
#16 29.16 
#16 29.16 init-title:
#16 29.16      [echo] ----------=========== bio-formats-tools ===========----------
#16 29.16 
#16 29.16 init-timestamp:
#16 29.16 
#16 29.16 init:
#16 29.16 
#16 29.16 copy-resources:
#16 29.16 
#16 29.16 compile:
#16 29.40 [resolver:resolve] Resolving artifacts
#16 29.41 
#16 29.41 bio-formats-tools.jar:
#16 29.41 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 29.42 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 29.42 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 29.42 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.42 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 29.42 
#16 29.42 deps-tests:
#16 29.42 
#16 29.42 jar-tests:
#16 29.51      [echo] isSnapshot = true
#16 29.66 
#16 29.66 init-title:
#16 29.66      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.66 
#16 29.66 init-timestamp:
#16 29.66 
#16 29.66 init:
#16 29.66 
#16 29.66 copy-resources:
#16 29.66 
#16 29.66 compile:
#16 29.91 [resolver:resolve] Resolving artifacts
#16 29.92 
#16 29.92 tests.jar:
#16 29.92 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 29.93 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 29.93 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 29.93 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.93 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 29.93 
#16 29.93 jars:
#16 29.93 
#16 29.93 tools:
#16 29.93      [echo] ----------=========== bioformats_package ===========----------
#16 30.02      [echo] isSnapshot = true
#16 30.17 
#16 30.17 init-timestamp:
#16 30.17 
#16 30.17 bundle:
#16 30.42 [resolver:resolve] Resolving artifacts
#16 30.43     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.46     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.23-SNAPSHOT/ome-common-6.0.23-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.48     [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.51     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.51     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 30.60     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 30.66     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.90     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.95     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.97     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.03     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.04     [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.05     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.06     [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.24     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.75     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.75     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.75     [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.76     [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.85     [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.86     [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.86     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.92     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.98     [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.99     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.01     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.15     [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.18     [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.26     [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.30     [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.30     [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.34     [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.36     [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.81     [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.83     [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.87     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.94     [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.05     [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.06     [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.08     [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.09     [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 33.47     [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.57     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 33.59     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.72     [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.73     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.19     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 34.38     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.39     [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.40     [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.56     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 34.60     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.60     [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.64     [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.05     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.17     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.51       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 41.20    [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 41.78 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 41.78 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 41.81 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 41.85 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 41.85 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 41.86 
#16 41.86 BUILD SUCCESSFUL
#16 41.86 Total time: 41 seconds
#16 DONE 42.7s

#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s

#18 exporting to image
#18 exporting layers
#18 exporting layers 3.3s done
#18 writing image sha256:2c2780203ecc6d30d614259951fe4b765e011cb0b08f944eb11dc5a65b044fdf done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.3s

 [33m1 warning found (use --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS