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#14 284.8 Progress (1): 0.5/6.0 MB
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#14 285.0 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#14 285.0 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#14 285.3 Progress (1): 0/4.1 MB
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#14 285.9 Progress (1): 0.7/4.1 MB
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#14 287.8 [[1;34mINFO[m]
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#14 287.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 287.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 287.8 [[1;34mINFO[m] Storing buildNumber: fa9b8c293e9e11ea51bd3d531f0de6d89e1b7ad0 at timestamp: 1727828950515
#14 287.8 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 287.8 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 287.8
#14 287.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 287.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 287.8 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 287.8 [[1;34mINFO[m]
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#14 287.8 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 287.8 [[1;34mINFO[m] Copying 1 resource
#14 287.8 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/formats-gpl/lib
#14 287.8 [[1;34mINFO[m] Copying 0 resource
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#14 287.8 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 287.8 [[1;34mINFO[m] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/target/classes
#14 289.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 289.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 289.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 289.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
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#14 289.9 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 289.9 [[1;34mINFO[m] Compiling 23 source files to /bio-formats-build/bioformats/components/formats-gpl/target/test-classes
#14 290.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 290.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 290.1 [[1;34mINFO[m]
#14 290.1 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mformats-gpl[0;1m ---[m
#14 290.1 [[1;34mINFO[m]
#14 290.1 [[1;34mINFO[m] -------------------------------------------------------
#14 290.1 [[1;34mINFO[m] T E S T S
#14 290.1 [[1;34mINFO[m] -------------------------------------------------------
#14 290.3 [[1;34mINFO[m] Running [1mTestSuite[m
#14 291.5 2024-10-02 00:29:14,204 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@1ad777f reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 291.5 2024-10-02 00:29:14,209 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@1af1347d reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 291.5 2024-10-02 00:29:14,263 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@219f4597 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 291.5 2024-10-02 00:29:14,263 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@7da10b5b reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 291.6 2024-10-02 00:29:14,312 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@13e9f2e2 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 291.6 2024-10-02 00:29:14,312 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@673bb956 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 291.6 2024-10-02 00:29:14,359 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@4beddc56 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 291.6 2024-10-02 00:29:14,359 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@25cc7470 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 291.7 2024-10-02 00:29:14,402 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@6dba847b reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 291.7 2024-10-02 00:29:14,402 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@1c6e0a08 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 291.7 2024-10-02 00:29:14,459 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@4d8539de reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 291.7 2024-10-02 00:29:14,459 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3eba57a7 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 291.8 2024-10-02 00:29:14,503 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@60921b21 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 291.8 2024-10-02 00:29:14,503 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@bd2f5a9 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 291.8 2024-10-02 00:29:14,543 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@37c5fc56 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 291.8 2024-10-02 00:29:14,543 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@43cf6ea3 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 292.0 [[1;34mINFO[m] [1;32mTests run: [0;1;32m99[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.767 s - in [1mTestSuite[m
#14 292.4 [[1;34mINFO[m]
#14 292.4 [[1;34mINFO[m] Results:
#14 292.4 [[1;34mINFO[m]
#14 292.4 [[1;34mINFO[m] [1;32mTests run: 99, Failures: 0, Errors: 0, Skipped: 0[m
#14 292.4 [[1;34mINFO[m]
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#14 292.4 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-mdb-test)[m @ [36mformats-gpl[0;1m ---[m
#14 292.4 [[1;34mINFO[m]
#14 292.4 [[1;34mINFO[m] -------------------------------------------------------
#14 292.4 [[1;34mINFO[m] T E S T S
#14 292.4 [[1;34mINFO[m] -------------------------------------------------------
#14 292.5 [[1;34mINFO[m] Running [1mTestSuite[m
#14 292.9 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.398 s - in [1mTestSuite[m
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#14 293.3 [[1;34mINFO[m]
#14 293.3 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 293.3 [[1;34mINFO[m]
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#14 293.3 [[1;34mINFO[m]
#14 293.3 [[1;34mINFO[m] -------------------------------------------------------
#14 293.3 [[1;34mINFO[m] T E S T S
#14 293.3 [[1;34mINFO[m] -------------------------------------------------------
#14 293.4 [[1;34mINFO[m] Running [1mTestSuite[m
#14 293.8 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.389 s - in [1mTestSuite[m
#14 294.1 [[1;34mINFO[m]
#14 294.1 [[1;34mINFO[m] Results:
#14 294.1 [[1;34mINFO[m]
#14 294.1 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 294.1 [[1;34mINFO[m]
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#14 294.1 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-netcdf-test)[m @ [36mformats-gpl[0;1m ---[m
#14 294.2 [[1;34mINFO[m]
#14 294.2 [[1;34mINFO[m] -------------------------------------------------------
#14 294.2 [[1;34mINFO[m] T E S T S
#14 294.2 [[1;34mINFO[m] -------------------------------------------------------
#14 294.3 [[1;34mINFO[m] Running [1mTestSuite[m
#14 294.7 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.405 s - in [1mTestSuite[m
#14 295.0 [[1;34mINFO[m]
#14 295.0 [[1;34mINFO[m] Results:
#14 295.0 [[1;34mINFO[m]
#14 295.0 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 295.0 [[1;34mINFO[m]
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#14 295.0 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mformats-gpl[0;1m ---[m
#14 295.1 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT.jar
#14 295.1 [[1;34mINFO[m]
#14 295.1 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m >>>[m
#14 295.1 [[1;34mINFO[m]
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#14 295.1 [[1;34mINFO[m]
#14 295.1 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 295.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 295.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 295.1 [[1;34mINFO[m] Storing buildNumber: fa9b8c293e9e11ea51bd3d531f0de6d89e1b7ad0 at timestamp: 1727828957843
#14 295.1 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 295.1 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 295.1
#14 295.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 295.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 295.1 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 295.1 [[1;34mINFO[m]
#14 295.1 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m <<<[m
#14 295.1 [[1;34mINFO[m]
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#14 295.1 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT-sources.jar
#14 295.2 [[1;34mINFO[m]
#14 295.2 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 295.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT-tests.jar
#14 295.2 [[1;34mINFO[m]
#14 295.2 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mformats-gpl[0;1m ---[m
#14 295.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#14 295.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#14 295.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT-sources.jar
#14 295.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.0.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT-tests.jar
#14 295.2 [[1;34mINFO[m]
#14 295.2 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats_plugins[0;1m >-----------------------[m
#14 295.2 [[1;34mINFO[m] [1mBuilding Bio-Formats Plugins for ImageJ 8.0.0-SNAPSHOT [18/25][m
#14 295.2 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 295.2 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
#14 295.2 Progress (1): 4.1/7.9 kB
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#14 295.2 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar (2.5 MB at 20 MB/s)
#14 295.4 [[1;34mINFO[m]
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#14 295.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 295.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 295.4 [[1;34mINFO[m] Storing buildNumber: fa9b8c293e9e11ea51bd3d531f0de6d89e1b7ad0 at timestamp: 1727828958108
#14 295.4 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 295.4 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 295.4
#14 295.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 295.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 295.4 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
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#14 295.4 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
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#14 295.4 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 295.4 [[1;34mINFO[m] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/classes
#14 295.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 295.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 295.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 295.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
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#14 295.9 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 295.9 [[1;34mINFO[m] Compiling 3 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/test-classes
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#14 296.1 [[1;34mINFO[m] -------------------------------------------------------
#14 296.1 [[1;34mINFO[m] T E S T S
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#14 296.3 [[1;34mINFO[m] Running [1mTestSuite[m
#14 297.4 Warning: Data has too many channels for Colorized color mode
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#14 297.8 Warning: Data has too many channels for Composite color mode
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#14 298.1 Warning: Data has too many channels for Composite color mode
#14 298.1 Warning: Data has too many channels for Composite color mode
#14 298.1 Warning: Data has too many channels for Composite color mode
#14 298.2 Warning: Data has too many channels for Composite color mode
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#14 298.2 Warning: Data has too many channels for Composite color mode
#14 298.2 Warning: Data has too many channels for Composite color mode
#14 298.2 Warning: Data has too many channels for Composite color mode
#14 298.2 Warning: Data has too many channels for Composite color mode
#14 298.2 Warning: Data has too many channels for Composite color mode
#14 298.5 Warning: Data has too many channels for Composite color mode
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#14 298.5 Warning: Data has too many channels for Composite color mode
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#14 298.5 Warning: Data has too many channels for Composite color mode
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#14 298.6 Warning: Data has too many channels for Composite color mode
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#14 298.6 Warning: Data has too many channels for Composite color mode
#14 298.6 Warning: Data has too many channels for Composite color mode
#14 298.6 Warning: Data has too many channels for Composite color mode
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#14 298.6 Warning: Data has too many channels for Composite color mode
#14 299.0 Warning: Data has too many channels for Composite color mode
#14 299.0 Warning: Data has too many channels for Composite color mode
#14 299.0 Warning: Data has too many channels for Composite color mode
#14 299.0 Warning: Data has too many channels for Composite color mode
#14 299.0 Warning: Data has too many channels for Composite color mode
#14 299.0 Warning: Data has too many channels for Composite color mode
#14 299.0 Warning: Data has too many channels for Composite color mode
#14 299.0 Warning: Data has too many channels for Composite color mode
#14 299.0 Warning: Data has too many channels for Composite color mode
#14 299.0 Warning: Data has too many channels for Composite color mode
#14 299.1 Warning: Data has too many channels for Composite color mode
#14 299.1 Warning: Data has too many channels for Composite color mode
#14 299.1 Warning: Data has too many channels for Composite color mode
#14 299.1 Warning: Data has too many channels for Composite color mode
#14 299.1 Warning: Data has too many channels for Composite color mode
#14 299.1 Warning: Data has too many channels for Composite color mode
#14 299.4 Warning: Data has too many channels for Composite color mode
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#14 299.5 Warning: Data has too many channels for Composite color mode
#14 299.5 Warning: Data has too many channels for Composite color mode
#14 299.5 Warning: Data has too many channels for Composite color mode
#14 299.5 Warning: Data has too many channels for Composite color mode
#14 299.5 Warning: Data has too many channels for Composite color mode
#14 299.5 Warning: Data has too many channels for Composite color mode
#14 299.5 Warning: Data has too many channels for Composite color mode
#14 299.5 Warning: Data has too many channels for Composite color mode
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#14 299.6 Warning: Data has too many channels for Composite color mode
#14 299.6 Warning: Data has too many channels for Composite color mode
#14 299.6 Warning: Data has too many channels for Composite color mode
#14 299.6 Warning: Data has too many channels for Composite color mode
#14 299.6 Warning: Data has too many channels for Composite color mode
#14 299.6 Warning: Data has too many channels for Custom color mode
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#14 299.8 Warning: Data has too many channels for Default color mode
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#14 300.0 Warning: Data has too many channels for Default color mode
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#14 300.1 Warning: Data has too many channels for Default color mode
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#14 300.2 Warning: Data has too many channels for Grayscale color mode
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#14 300.3 Warning: Data has too many channels for Grayscale color mode
#14 300.3 Warning: Data has too many channels for Grayscale color mode
#14 300.3 Warning: Data has too many channels for Grayscale color mode
#14 300.3 Warning: Data has too many channels for Grayscale color mode
#14 300.4 Warning: Data has too many channels for Grayscale color mode
#14 300.4 Warning: Data has too many channels for Colorized color mode
#14 300.4 Warning: Data has too many channels for Colorized color mode
#14 300.4 Warning: Data has too many channels for Colorized color mode
#14 301.0 Warning: Data has too many channels for Default color mode
#14 301.3 [[1;34mINFO[m] [1;32mTests run: [0;1;32m30[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.979 s - in [1mTestSuite[m
#14 301.6 [[1;34mINFO[m]
#14 301.6 [[1;34mINFO[m] Results:
#14 301.6 [[1;34mINFO[m]
#14 301.6 [[1;34mINFO[m] [1;32mTests run: 30, Failures: 0, Errors: 0, Skipped: 0[m
#14 301.6 [[1;34mINFO[m]
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#14 301.6 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 301.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#14 301.6 [[1;34mINFO[m]
#14 301.6 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m >>>[m
#14 301.6 [[1;34mINFO[m]
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#14 301.6 [[1;34mINFO[m]
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#14 301.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 301.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 301.6 [[1;34mINFO[m] Storing buildNumber: fa9b8c293e9e11ea51bd3d531f0de6d89e1b7ad0 at timestamp: 1727828964353
#14 301.6 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 301.6 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 301.6
#14 301.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 301.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 301.6 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 301.6 [[1;34mINFO[m]
#14 301.6 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m <<<[m
#14 301.6 [[1;34mINFO[m]
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#14 301.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT-sources.jar
#14 301.7 [[1;34mINFO[m]
#14 301.7 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 301.7 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT-tests.jar
#14 301.7 [[1;34mINFO[m]
#14 301.7 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 301.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#14 301.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#14 301.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT-sources.jar
#14 301.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.0.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT-tests.jar
#14 301.7 [[1;34mINFO[m]
#14 301.7 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bio-formats-tools[0;1m >------------------------[m
#14 301.7 [[1;34mINFO[m] [1mBuilding Bio-Formats command line tools 8.0.0-SNAPSHOT [19/25][m
#14 301.7 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 301.7 [[1;34mINFO[m]
#14 301.7 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats-tools[0;1m ---[m
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#14 301.7 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 301.7 [[1;34mINFO[m]
#14 301.7 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 301.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 301.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 301.7 [[1;34mINFO[m] Storing buildNumber: fa9b8c293e9e11ea51bd3d531f0de6d89e1b7ad0 at timestamp: 1727828964438
#14 301.7 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 301.7 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 301.7
#14 301.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 301.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 301.7 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 301.7 [[1;34mINFO[m]
#14 301.7 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 301.7 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 301.7 [[1;34mINFO[m] Copying 0 resource
#14 301.7 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-tools/lib
#14 301.7 [[1;34mINFO[m] Copying 0 resource
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#14 301.7 [[1;34mINFO[m]
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#14 301.7 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 301.7 [[1;34mINFO[m] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/target/classes
#14 301.9 [[1;34mINFO[m]
#14 301.9 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 301.9 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 301.9 [[1;34mINFO[m] Copying 1 resource
#14 301.9 [[1;34mINFO[m]
#14 301.9 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 301.9 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 301.9 [[1;34mINFO[m] Compiling 1 source file to /bio-formats-build/bioformats/components/bio-formats-tools/target/test-classes
#14 302.0 [[1;34mINFO[m]
#14 302.0 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats-tools[0;1m ---[m
#14 302.0 [[1;34mINFO[m]
#14 302.0 [[1;34mINFO[m] -------------------------------------------------------
#14 302.0 [[1;34mINFO[m] T E S T S
#14 302.0 [[1;34mINFO[m] -------------------------------------------------------
#14 302.2 [[1;34mINFO[m] Running loci.formats.tools.[1mImageConverterTest[m
#14 366.2 [[1;34mINFO[m] [1;32mTests run: [0;1;32m55[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 64.053 s - in loci.formats.tools.[1mImageConverterTest[m
#14 366.6 [[1;34mINFO[m]
#14 366.6 [[1;34mINFO[m] Results:
#14 366.6 [[1;34mINFO[m]
#14 366.6 [[1;34mINFO[m] [1;32mTests run: 55, Failures: 0, Errors: 0, Skipped: 0[m
#14 366.6 [[1;34mINFO[m]
#14 366.6 [[1;34mINFO[m]
#14 366.6 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats-tools[0;1m ---[m
#14 366.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT.jar
#14 366.6 [[1;34mINFO[m]
#14 366.6 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m >>>[m
#14 366.6 [[1;34mINFO[m]
#14 366.6 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 366.6 [[1;34mINFO[m]
#14 366.6 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 366.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 366.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 366.6 [[1;34mINFO[m] Storing buildNumber: fa9b8c293e9e11ea51bd3d531f0de6d89e1b7ad0 at timestamp: 1727829029348
#14 366.6 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 366.6 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 366.6
#14 366.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 366.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 366.6 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 366.6 [[1;34mINFO[m]
#14 366.6 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m <<<[m
#14 366.6 [[1;34mINFO[m]
#14 366.6 [[1;34mINFO[m]
#14 366.6 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 366.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT-sources.jar
#14 366.6 [[1;34mINFO[m]
#14 366.6 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 366.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT-tests.jar
#14 366.6 [[1;34mINFO[m]
#14 366.6 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats-tools[0;1m ---[m
#14 366.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#14 366.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#14 366.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT-sources.jar
#14 366.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.0.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT-tests.jar
#14 366.6 [[1;34mINFO[m]
#14 366.6 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bioformats_package[0;1m >-----------------------[m
#14 366.6 [[1;34mINFO[m] [1mBuilding bioformats_package bundle 8.0.0-SNAPSHOT [20/25][m
#14 366.6 [[1;34mINFO[m] [1m--------------------------------[ pom ]---------------------------------[m
#14 366.7 [[1;34mINFO[m]
#14 366.7 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbioformats_package[0;1m ---[m
#14 366.7 [[1;34mINFO[m]
#14 366.7 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 366.7 [[1;34mINFO[m]
#14 366.7 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 366.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 366.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 366.7 [[1;34mINFO[m] Storing buildNumber: fa9b8c293e9e11ea51bd3d531f0de6d89e1b7ad0 at timestamp: 1727829029397
#14 366.7 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 366.7 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 366.7
#14 366.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 366.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 366.7 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 366.7 [[1;34mINFO[m]
#14 366.7 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbioformats_package[0;1m >>>[m
#14 366.7 [[1;34mINFO[m]
#14 366.7 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 366.7 [[1;34mINFO[m]
#14 366.7 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 366.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 366.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 366.7 [[1;34mINFO[m] Storing buildNumber: fa9b8c293e9e11ea51bd3d531f0de6d89e1b7ad0 at timestamp: 1727829029415
#14 366.7 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 366.7 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 366.7
#14 366.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 366.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 366.7 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 366.7 [[1;34mINFO[m]
#14 366.7 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbioformats_package[0;1m <<<[m
#14 366.7 [[1;34mINFO[m]
#14 366.7 [[1;34mINFO[m]
#14 366.7 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 366.7 [[1;34mINFO[m]
#14 366.7 [[1;34mINFO[m] [1m--- [0;32mmaven-assembly-plugin:3.1.0:single[m [1m(make-assembly)[m @ [36mbioformats_package[0;1m ---[m
#14 366.8 [[1;34mINFO[m] Reading assembly descriptor: assembly.xml
#14 367.0 [[1;33mWARNING[m] The following patterns were never triggered in this artifact exclusion filter:
#14 367.0 o 'gov.nih.imagej:imagej'
#14 367.0 o 'net.imagej:ij'
#14 367.0 o 'org.springframework:spring*'
#14 367.0 o 'aopalliance:aopalliance'
#14 367.0 o 'org.aspectj:aspectj*'
#14 367.0 o 'org.slf4j:slf4j-log4j12'
#14 367.0 o 'log4j:log4j'
#14 367.0 o 'org.testng:testng'
#14 367.0 o 'com.beust:jcommander'
#14 367.0 o 'org.beanshell:bsh'
#14 367.0 o 'edu.princeton.cup:java-cup'
#14 367.0 o 'org.apache.bcel:bcel'
#14 367.0 o 'regexp:regexp'
#14 367.0 o 'org.apache.ant:ant-trax'
#14 367.0 o 'edu.ucar:udunits'
#14 367.0 o 'javax.servlet:servlet-api'
#14 367.0
#14 367.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.8/maven-bundle-plugin-5.1.8.pom
#14 367.1 Progress (1): 4.1/11 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.8/maven-bundle-plugin-5.1.8.pom (11 kB at 398 kB/s)
#14 367.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/felix-parent/7/felix-parent-7.pom
#14 367.1 Progress (1): 4.1/21 kB
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#14 367.1 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/6.0.0/org.osgi.core-6.0.0.pom
#14 367.1 Progress (1): 1.1 kB
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#14 367.2 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/6.3.1/biz.aQute.bndlib-6.3.1.pom
#14 367.2 Progress (1): 4.1/5.2 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/6.3.1/biz.aQute.bndlib-6.3.1.pom (5.2 kB at 210 kB/s)
#14 367.2 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.dto/1.0.0/org.osgi.dto-1.0.0.pom
#14 367.2 Progress (1): 1.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.dto/1.0.0/org.osgi.dto-1.0.0.pom (1.3 kB at 53 kB/s)
#14 367.2 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.resource/1.0.0/org.osgi.resource-1.0.0.pom
#14 367.2 Progress (1): 1.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.resource/1.0.0/org.osgi.resource-1.0.0.pom (1.3 kB at 53 kB/s)
#14 367.2 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.framework/1.8.0/org.osgi.framework-1.8.0.pom
#14 367.3 Progress (1): 1.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.framework/1.8.0/org.osgi.framework-1.8.0.pom (1.3 kB at 53 kB/s)
#14 367.3 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.tracker/1.5.4/org.osgi.util.tracker-1.5.4.pom
#14 367.3 Progress (1): 1.9 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.tracker/1.5.4/org.osgi.util.tracker-1.5.4.pom (1.9 kB at 75 kB/s)
#14 367.3 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/osgi.annotation/8.0.1/osgi.annotation-8.0.1.pom
#14 367.3 Progress (1): 1.5 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/osgi.annotation/8.0.1/osgi.annotation-8.0.1.pom (1.5 kB at 62 kB/s)
#14 367.3 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.log/1.3.0/org.osgi.service.log-1.3.0.pom
#14 367.3 Progress (1): 1.3 kB
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#14 367.3 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.repository/1.1.0/org.osgi.service.repository-1.1.0.pom
#14 367.4 Progress (1): 1.3 kB
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#14 367.4 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.function/1.2.0/org.osgi.util.function-1.2.0.pom
#14 367.4 Progress (1): 1.7 kB
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#14 367.4 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.promise/1.2.0/org.osgi.util.promise-1.2.0.pom
#14 367.4 Progress (1): 1.9 kB
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#14 367.4 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.function/1.1.0/org.osgi.util.function-1.1.0.pom
#14 367.4 Progress (1): 1.4 kB
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#14 367.4 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bnd.util/6.3.1/biz.aQute.bnd.util-6.3.1.pom
#14 367.5 Progress (1): 2.7 kB
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#14 367.5 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.pom
#14 367.5 Progress (1): 3.8 kB
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#14 367.5 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-parent/1.7.25/slf4j-parent-1.7.25.pom
#14 367.5 Progress (1): 4.1/14 kB
Progress
#14 367.5 [output clipped, log limit 2MiB reached]
#14 856.1 SLF4J: No SLF4J providers were found.
#14 856.1 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 856.1 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 866.1s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.592 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.137 [echo] isSnapshot = true
#16 3.241
#16 3.241 copy-jars:
#16 3.241
#16 3.241 deps-formats-api:
#16 3.324 [echo] isSnapshot = true
#16 3.376
#16 3.376 install-pom:
#16 3.552 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 3.890 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 3.895 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.896
#16 3.896 jar-formats-api:
#16 4.002 [echo] isSnapshot = true
#16 4.161
#16 4.161 init-title:
#16 4.161 [echo] ----------=========== formats-api ===========----------
#16 4.161
#16 4.161 init-timestamp:
#16 4.169
#16 4.169 init:
#16 4.169
#16 4.169 copy-resources:
#16 4.170 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.182 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.185
#16 4.185 compile:
#16 4.366 [resolver:resolve] Resolving artifacts
#16 4.391 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.640 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.240 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.240 [javac] import loci.common.ReflectedUniverse;
#16 5.240 [javac] ^
#16 5.541 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.541 [javac] int currentIndex = r.getCoreIndex();
#16 5.541 [javac] ^
#16 5.541 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.541 [javac] r.setCoreIndex(coreIndex);
#16 5.541 [javac] ^
#16 5.541 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.541 [javac] r.setCoreIndex(currentIndex);
#16 5.541 [javac] ^
#16 5.642 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.642 [javac] public void setCoreIndex(int no) {
#16 5.642 [javac] ^
#16 5.642 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.642 [javac] public int getCoreIndex() {
#16 5.642 [javac] ^
#16 5.642 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.642 [javac] public int coreIndexToSeries(int index)
#16 5.642 [javac] ^
#16 5.643 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.643 [javac] public int seriesToCoreIndex(int series)
#16 5.643 [javac] ^
#16 5.643 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.643 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.643 [javac] ^
#16 5.743 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.743 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 5.743 [javac] ^
#16 5.744 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.744 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 5.744 [javac] ^
#16 5.744 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.744 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 5.744 [javac] ^
#16 5.744 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.744 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 5.744 [javac] ^
#16 5.845 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.845 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.845 [javac] ^
#16 5.845 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.845 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.845 [javac] ^
#16 5.945 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.945 [javac] public void setCoreIndex(int no) {
#16 5.945 [javac] ^
#16 5.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.946 [javac] public int getCoreIndex() {
#16 5.946 [javac] ^
#16 5.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.946 [javac] public int coreIndexToSeries(int index) {
#16 5.946 [javac] ^
#16 5.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.946 [javac] public int seriesToCoreIndex(int series) {
#16 5.946 [javac] ^
#16 5.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.946 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.946 [javac] ^
#16 5.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.947 [javac] return getReader().getCoreMetadataList();
#16 5.947 [javac] ^
#16 5.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.947 [javac] return getReader().getCoreIndex();
#16 5.947 [javac] ^
#16 5.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.947 [javac] getReader().setCoreIndex(no);
#16 5.947 [javac] ^
#16 5.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.947 [javac] return getReader().seriesToCoreIndex(series);
#16 5.947 [javac] ^
#16 5.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.947 [javac] return getReader().coreIndexToSeries(index);
#16 5.947 [javac] ^
#16 6.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.048 [javac] public void setCoreIndex(int no) {
#16 6.048 [javac] ^
#16 6.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.048 [javac] public int getCoreIndex() {
#16 6.048 [javac] ^
#16 6.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.048 [javac] public int coreIndexToSeries(int index) {
#16 6.048 [javac] ^
#16 6.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.048 [javac] public int seriesToCoreIndex(int series) {
#16 6.049 [javac] ^
#16 6.049 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.049 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 6.049 [javac] ^
#16 6.049 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.049 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.049 [javac] ^
#16 6.049 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.049 [javac] return reader.getCoreIndex();
#16 6.049 [javac] ^
#16 6.049 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.049 [javac] reader.setCoreIndex(no);
#16 6.049 [javac] ^
#16 6.049 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.049 [javac] return reader.seriesToCoreIndex(series);
#16 6.050 [javac] ^
#16 6.050 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.050 [javac] return reader.coreIndexToSeries(index);
#16 6.050 [javac] ^
#16 6.150 [javac] Note: Some input files use unchecked or unsafe operations.
#16 6.150 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 6.150 [javac] 36 warnings
#16 6.199
#16 6.199 formats-api.jar:
#16 6.199 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 6.222 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 6.252 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 6.256 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 6.344 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 6.346 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.348 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 6.349
#16 6.349 deps-turbojpeg:
#16 6.349
#16 6.349 jar-turbojpeg:
#16 6.446 [echo] isSnapshot = true
#16 6.589
#16 6.589 init-title:
#16 6.589 [echo] ----------=========== turbojpeg ===========----------
#16 6.589
#16 6.589 init-timestamp:
#16 6.590
#16 6.590 init:
#16 6.590
#16 6.590 copy-resources:
#16 6.590 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.591
#16 6.591 compile:
#16 6.600 [resolver:resolve] Resolving artifacts
#16 6.604 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.806 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.406 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 7.406 [javac] protected void finalize() throws Throwable {
#16 7.406 [javac] ^
#16 7.407 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 7.407 [javac] super.finalize();
#16 7.407 [javac] ^
#16 7.486 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 7.486 [javac] protected void finalize() throws Throwable {
#16 7.486 [javac] ^
#16 7.487 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 7.487 [javac] super.finalize();
#16 7.487 [javac] ^
#16 7.487 [javac] 5 warnings
#16 7.487
#16 7.487 jar:
#16 7.491 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 7.674 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 7.681 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 7.683 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 7.685 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 7.689 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 7.690
#16 7.690 deps-formats-bsd:
#16 7.690
#16 7.690 jar-formats-bsd:
#16 7.805 [echo] isSnapshot = true
#16 7.949
#16 7.949 init-title:
#16 7.949 [echo] ----------=========== formats-bsd ===========----------
#16 7.949
#16 7.949 init-timestamp:
#16 7.950
#16 7.950 init:
#16 7.950
#16 7.950 copy-resources:
#16 7.950 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.953 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.954
#16 7.954 compile:
#16 8.164 [resolver:resolve] Resolving artifacts
#16 8.191 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.400 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 9.601 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.601 [javac] import loci.common.ReflectedUniverse;
#16 9.601 [javac] ^
#16 9.901 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.901 [javac] core.size() != reader.getCoreMetadataList().size())
#16 9.901 [javac] ^
#16 9.901 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.901 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 9.901 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.00 [javac] int n = reader.getCoreMetadataList().size();
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.00 [javac] reader.setCoreIndex(coreIndex);
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.00 [javac] int n = reader.getCoreMetadataList().size();
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.00 [javac] int n = reader.getCoreMetadataList().size();
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 10.00 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.00 [javac] int n = reader.getCoreMetadataList().size();
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 10.00 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.00 [javac] int n = reader.getCoreMetadataList().size();
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.00 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.00 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.00 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.00 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.00 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.00 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.00 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.00 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 10.00 [javac] ^
#16 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.00 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 10.00 [javac] ^
#16 10.10 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.10 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 10.10 [javac] ^
#16 10.20 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.20 [javac] BitWriter out = new BitWriter();
#16 10.20 [javac] ^
#16 10.20 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.20 [javac] BitWriter out = new BitWriter();
#16 10.20 [javac] ^
#16 10.30 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 10.30 [javac] return new Double(v);
#16 10.30 [javac] ^
#16 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 11.01 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 11.01 [javac] ^
#16 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 11.01 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 11.01 [javac] ^
#16 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 11.01 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 11.01 [javac] ^
#16 11.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 11.11 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 11.11 [javac] ^
#16 11.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.31 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 11.31 [javac] ^
#16 11.41 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 11.41 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 11.41 [javac] ^
#16 11.51 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.51 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 11.51 [javac] ^
#16 11.51 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.51 [javac] protected ReflectedUniverse r;
#16 11.51 [javac] ^
#16 11.51 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.51 [javac] r = new ReflectedUniverse();
#16 11.51 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 11.61 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 11.61 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 11.61 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 11.61 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 11.61 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 11.61 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 11.61 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 11.61 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 11.61 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 11.61 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 11.61 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 11.61 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 11.61 [javac] ^
#16 11.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 11.61 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 11.61 [javac] ^
#16 11.71 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 11.71 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 11.71 [javac] ^
#16 11.71 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 11.71 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 11.71 [javac] ^
#16 11.71 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 11.71 [javac] result[i] = new Double(readNumber().doubleValue());
#16 11.71 [javac] ^
#16 11.75 [javac] Note: Some input files use unchecked or unsafe operations.
#16 11.75 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 11.75 [javac] 50 warnings
#16 11.75
#16 11.75 formats-bsd.jar:
#16 11.76 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 11.87 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 11.87 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 11.95 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 11.95 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 11.95 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 11.95
#16 11.95 deps-formats-gpl:
#16 11.95
#16 11.95 jar-formats-gpl:
#16 12.04 [echo] isSnapshot = true
#16 12.19
#16 12.19 init-title:
#16 12.19 [echo] ----------=========== formats-gpl ===========----------
#16 12.19
#16 12.19 init-timestamp:
#16 12.19
#16 12.19 init:
#16 12.19
#16 12.19 copy-resources:
#16 12.19 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.19 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.19
#16 12.19 compile:
#16 12.43 [resolver:resolve] Resolving artifacts
#16 12.60 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.60 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.93 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.93 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.96 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.96 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.99 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.20 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 14.40 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.40 [javac] import loci.formats.codec.BitWriter;
#16 14.40 [javac] ^
#16 14.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.50 [javac] import loci.formats.codec.BitWriter;
#16 14.50 [javac] ^
#16 16.60 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 16.60 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 16.60 [javac] ^
#16 16.60 [javac] cast to Object for a varargs call
#16 16.60 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 16.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.71 [javac] BitWriter bits = null;
#16 16.71 [javac] ^
#16 16.71 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.71 [javac] bits = new BitWriter(planes[index].length / 8);
#16 16.71 [javac] ^
#16 17.01 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.01 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 17.01 [javac] ^
#16 17.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.41 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.41 [javac] ^
#16 17.41 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.41 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.41 [javac] ^
#16 17.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 17.68 [javac] List<Attribute> attributes = variable.getAttributes();
#16 17.68 [javac] ^
#16 17.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.68 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 17.68 [javac] ^
#16 17.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.68 [javac] String groupName = group.getName();
#16 17.68 [javac] ^
#16 17.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 17.68 [javac] List<Attribute> attributes = group.getAttributes();
#16 17.68 [javac] ^
#16 17.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.68 [javac] String attributeName = attribute.getName();
#16 17.68 [javac] ^
#16 17.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.68 [javac] String variableName = variable.getName();
#16 17.68 [javac] ^
#16 17.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 17.68 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 17.68 [javac] ^
#16 17.68 [javac] Note: Some input files use unchecked or unsafe operations.
#16 17.68 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.68 [javac] 16 warnings
#16 17.68
#16 17.68 formats-gpl.jar:
#16 17.69 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 17.82 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 17.83 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 17.83 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 17.83 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 17.83 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 17.84
#16 17.84 deps-bio-formats-plugins:
#16 17.84
#16 17.84 jar-bio-formats-plugins:
#16 17.93 [echo] isSnapshot = true
#16 18.06
#16 18.06 init-title:
#16 18.06 [echo] ----------=========== bio-formats_plugins ===========----------
#16 18.06
#16 18.06 init-timestamp:
#16 18.06
#16 18.06 init:
#16 18.06
#16 18.06 copy-resources:
#16 18.06 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.06 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.07
#16 18.07 compile:
#16 18.30 [resolver:resolve] Resolving artifacts
#16 18.31 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.52 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.32 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.32 [javac] import loci.common.ReflectedUniverse;
#16 19.32 [javac] ^
#16 19.32 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.32 [javac] import loci.common.ReflectedUniverse;
#16 19.32 [javac] ^
#16 19.82 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 19.82 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 19.82 [javac] ^
#16 19.92 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.92 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.92 [javac] ^
#16 19.92 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.92 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.92 [javac] ^
#16 20.12 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.12 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.12 [javac] ^
#16 20.12 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.12 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.12 [javac] ^
#16 20.42 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 20.42 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 20.42 [javac] 8 warnings
#16 20.46
#16 20.46 bio-formats-plugins.jar:
#16 20.46 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 20.49 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 20.49 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 20.61 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 20.61 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.61 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 20.61
#16 20.61 deps-bio-formats-tools:
#16 20.61
#16 20.61 jar-bio-formats-tools:
#16 20.71 [echo] isSnapshot = true
#16 20.84
#16 20.84 init-title:
#16 20.84 [echo] ----------=========== bio-formats-tools ===========----------
#16 20.84
#16 20.84 init-timestamp:
#16 20.84
#16 20.84 init:
#16 20.84
#16 20.84 copy-resources:
#16 20.85 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.85
#16 20.85 compile:
#16 21.07 [resolver:resolve] Resolving artifacts
#16 21.08 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.29 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 22.39 [javac] 1 warning
#16 22.40
#16 22.40 bio-formats-tools.jar:
#16 22.41 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 22.41 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 22.42 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 22.42 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 22.42 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 22.42 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 22.42
#16 22.42 deps-tests:
#16 22.42
#16 22.42 jar-tests:
#16 22.51 [echo] isSnapshot = true
#16 22.63
#16 22.63 init-title:
#16 22.63 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 22.63
#16 22.63 init-timestamp:
#16 22.63
#16 22.63 init:
#16 22.63
#16 22.63 copy-resources:
#16 22.63 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.63
#16 22.63 compile:
#16 22.91 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.03 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.04 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.46 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.93 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 24.00 [resolver:resolve] Resolving artifacts
#16 24.00 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.04 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.06 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.46 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.01 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 25.01 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 25.22 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 26.22 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.22 [javac] int index = unflattenedReader.getCoreIndex();
#16 26.22 [javac] ^
#16 26.22 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 26.22 [javac] reader.setCoreIndex(index);
#16 26.22 [javac] ^
#16 26.52 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.52 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 26.52 [javac] ^
#16 26.52 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.52 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 26.52 [javac] ^
#16 26.72 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.72 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 26.72 [javac] ^
#16 26.72 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.72 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 26.72 [javac] ^
#16 26.80 [javac] Note: Some input files use unchecked or unsafe operations.
#16 26.80 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 26.80 [javac] 7 warnings
#16 26.80
#16 26.80 tests.jar:
#16 26.80 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 26.82 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 26.82 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 26.82 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 26.83 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.83 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.83
#16 26.83 jars:
#16 26.83
#16 26.83 copy-jars:
#16 26.83
#16 26.83 deps-formats-api:
#16 26.87 [echo] isSnapshot = true
#16 26.91
#16 26.91 install-pom:
#16 27.03 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 27.03 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.03 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 27.03
#16 27.03 jar-formats-api:
#16 27.11 [echo] isSnapshot = true
#16 27.23
#16 27.23 init-title:
#16 27.23 [echo] ----------=========== formats-api ===========----------
#16 27.23
#16 27.23 init-timestamp:
#16 27.23
#16 27.23 init:
#16 27.23
#16 27.23 copy-resources:
#16 27.23
#16 27.23 compile:
#16 27.36 [resolver:resolve] Resolving artifacts
#16 27.36
#16 27.36 formats-api.jar:
#16 27.38 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 27.38 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 27.39 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 27.39 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.39 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 27.39
#16 27.39 deps-turbojpeg:
#16 27.39
#16 27.39 jar-turbojpeg:
#16 27.47 [echo] isSnapshot = true
#16 27.60
#16 27.60 init-title:
#16 27.60 [echo] ----------=========== turbojpeg ===========----------
#16 27.60
#16 27.60 init-timestamp:
#16 27.60
#16 27.60 init:
#16 27.60
#16 27.60 copy-resources:
#16 27.60
#16 27.60 compile:
#16 27.61 [resolver:resolve] Resolving artifacts
#16 27.61
#16 27.61 jar:
#16 27.62 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 27.62 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 27.62 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 27.62 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.63 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 27.63
#16 27.63 deps-formats-bsd:
#16 27.63
#16 27.63 jar-formats-bsd:
#16 27.72 [echo] isSnapshot = true
#16 27.84
#16 27.84 init-title:
#16 27.84 [echo] ----------=========== formats-bsd ===========----------
#16 27.84
#16 27.84 init-timestamp:
#16 27.84
#16 27.84 init:
#16 27.84
#16 27.84 copy-resources:
#16 27.84
#16 27.84 compile:
#16 28.01 [resolver:resolve] Resolving artifacts
#16 28.03
#16 28.03 formats-bsd.jar:
#16 28.06 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 28.06 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 28.06 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 28.06 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.07 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 28.07
#16 28.07 deps-formats-gpl:
#16 28.07
#16 28.07 jar-formats-gpl:
#16 28.14 [echo] isSnapshot = true
#16 28.26
#16 28.26 init-title:
#16 28.26 [echo] ----------=========== formats-gpl ===========----------
#16 28.26
#16 28.26 init-timestamp:
#16 28.26
#16 28.26 init:
#16 28.26
#16 28.26 copy-resources:
#16 28.27
#16 28.27 compile:
#16 28.48 [resolver:resolve] Resolving artifacts
#16 28.49
#16 28.49 formats-gpl.jar:
#16 28.53 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 28.53 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 28.53 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 28.53 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.53 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 28.54
#16 28.54 deps-bio-formats-plugins:
#16 28.54
#16 28.54 jar-bio-formats-plugins:
#16 28.61 [echo] isSnapshot = true
#16 28.73
#16 28.73 init-title:
#16 28.73 [echo] ----------=========== bio-formats_plugins ===========----------
#16 28.73
#16 28.73 init-timestamp:
#16 28.73
#16 28.73 init:
#16 28.73
#16 28.73 copy-resources:
#16 28.73
#16 28.73 compile:
#16 28.95 [resolver:resolve] Resolving artifacts
#16 28.97
#16 28.97 bio-formats-plugins.jar:
#16 28.98 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 28.98 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 28.98 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 28.98 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.98 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 28.99
#16 28.99 deps-bio-formats-tools:
#16 28.99
#16 28.99 jar-bio-formats-tools:
#16 29.06 [echo] isSnapshot = true
#16 29.19
#16 29.19 init-title:
#16 29.19 [echo] ----------=========== bio-formats-tools ===========----------
#16 29.19
#16 29.19 init-timestamp:
#16 29.19
#16 29.19 init:
#16 29.19
#16 29.19 copy-resources:
#16 29.19
#16 29.19 compile:
#16 29.40 [resolver:resolve] Resolving artifacts
#16 29.41
#16 29.41 bio-formats-tools.jar:
#16 29.42 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 29.43 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 29.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 29.43 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.43 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 29.43
#16 29.43 deps-tests:
#16 29.43
#16 29.43 jar-tests:
#16 29.55 [echo] isSnapshot = true
#16 29.68
#16 29.68 init-title:
#16 29.68 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.68
#16 29.68 init-timestamp:
#16 29.68
#16 29.68 init:
#16 29.68
#16 29.68 copy-resources:
#16 29.68
#16 29.68 compile:
#16 29.91 [resolver:resolve] Resolving artifacts
#16 29.92
#16 29.92 tests.jar:
#16 29.92 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 29.93 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 29.93 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 29.93 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.93 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 29.93
#16 29.93 jars:
#16 29.93
#16 29.93 tools:
#16 29.93 [echo] ----------=========== bioformats_package ===========----------
#16 30.01 [echo] isSnapshot = true
#16 30.14
#16 30.14 init-timestamp:
#16 30.14
#16 30.14 bundle:
#16 30.39 [resolver:resolve] Resolving artifacts
#16 30.40 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.43 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.24-SNAPSHOT/ome-common-6.0.24-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.45 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.48 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.49 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.55 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.57 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.62 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.63 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.85 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.01 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.03 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.09 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.10 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.11 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.11 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.29 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.84 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.84 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.84 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.85 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.94 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.94 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.95 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.01 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.07 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.08 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.09 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.24 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.27 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.34 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.38 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.39 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.43 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.45 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.89 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.92 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.95 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.02 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.13 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.14 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.18 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.19 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.43 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.55 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.61 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.71 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.73 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.76 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.90 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.91 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.38 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.39 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.51 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.59 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.59 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.61 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.77 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.78 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.79 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.81 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.81 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.84 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.25 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.37 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.68 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 41.15 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 41.69 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 41.71 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 41.71 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 41.74 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 41.74 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 41.75
#16 41.75 BUILD SUCCESSFUL
#16 41.75 Total time: 41 seconds
#16 DONE 43.7s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.4s done
#18 writing image sha256:a864a5d8781fc83c0106a42f83ca2935018129ca47eeae18330c600516c21c25 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.6s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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