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#14 423.3 Progress (2): 381/632 kB | 170/195 kB
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#14 423.3 Progress (4): 632 kB | 76 kB | 37 kB | 33/263 kB
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#14 423.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-site-renderer/1.0/doxia-site-renderer-1.0.jar
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#14 423.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-core/1.0/doxia-core-1.0.jar
#14 423.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/3.0/maven-dependency-tree-3.0.jar (37 kB at 91 kB/s)
#14 423.3 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-velocity/1.1.7/plexus-velocity-1.1.7.jar
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#14 423.3 Progress (4): 10 kB | 47 kB | 37/55 kB | 7.7 kB
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#14 423.3 Downloading from central: https://repo.maven.apache.org/maven2/commons-lang/commons-lang/2.1/commons-lang-2.1.jar
#14 423.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-site-renderer/1.0/doxia-site-renderer-1.0.jar (47 kB at 109 kB/s)
#14 423.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-decoration-model/1.0/doxia-decoration-model-1.0.jar
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#14 423.3 Downloading from central: https://repo.maven.apache.org/maven2/commons-collections/commons-collections/3.2/commons-collections-3.2.jar
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#14 423.3 Progress (4): 392 kB | 174/571 kB | 47 kB | 49 kB
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#14 423.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xdoc/1.0/doxia-module-xdoc-1.0.jar
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#14 423.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xhtml/1.0/doxia-module-xhtml-1.0.jar
#14 423.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-decoration-model/1.0/doxia-decoration-model-1.0.jar (49 kB at 106 kB/s)
#14 423.4 Progress (1): 420/571 kB
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#14 423.4 Progress (4): 19 kB | 28 kB | 22 kB | 94/153 kB
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#14 423.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xhtml/1.0/doxia-module-xhtml-1.0.jar (22 kB at 45 kB/s)
#14 423.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/jdom/jdom/1.1/jdom-1.1.jar (153 kB at 313 kB/s)
#14 423.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.pom
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#14 423.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers-git/1.13.0/maven-scm-providers-git-1.13.0.pom
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#14 423.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers/1.13.0/maven-scm-providers-1.13.0.pom
#14 423.7 Progress (1): 3.6 kB
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#14 423.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm/1.13.0/maven-scm-1.13.0.pom
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#14 424.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.3/maven-scm-provider-git-commons-1.3.jar
#14 424.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.3/maven-scm-provider-gitexe-1.3.jar (49 kB at 1.8 MB/s)
#14 424.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.3/maven-scm-api-1.3.jar (89 kB at 3.0 MB/s)
#14 424.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/1.5.8/plexus-utils-1.5.8.jar (268 kB at 7.2 MB/s)
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#14 424.6 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.8/nexus-staging-maven-plugin-1.6.8.pom
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#14 424.8 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/14.0.1/guava-parent-14.0.1.pom
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#14 424.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-parent/2.14.3-02/nexus-parent-2.14.3-02.pom
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#14 426.2 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-httpclient/2.14.3-02/nexus-buildsupport-httpclient-2.14.3-02.pom
#14 426.3 Progress (1): 2.1 kB
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#14 426.4 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-insight/2.14.3-02/nexus-buildsupport-insight-2.14.3-02.pom
#14 426.5 Progress (1): 3.5/4.4 kB
Progress (1): 4.4 kB
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#14 426.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-maven/2.14.3-02/nexus-buildsupport-maven-2.14.3-02.pom
#14 426.7 Progress (1): 4.1/7.1 kB
Progress (1): 7.1 kB
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#14 426.8 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-messaging/2.14.3-02/nexus-buildsupport-messaging-2.14.3-02.pom
#14 426.9 Progress (1): 4.1/5.0 kB
Progress (1): 5.0 kB
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#14 427.0 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-shiro/2.14.3-02/nexus-buildsupport-shiro-2.14.3-02.pom
#14 427.0 Progress (1): 3.4 kB
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#14 427.1 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-bouncycastle/2.14.3-02/nexus-buildsupport-bouncycastle-2.14.3-02.pom
#14 427.2 Progress (1): 2.1 kB
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#14 427.3 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-jetty/2.14.3-02/nexus-buildsupport-jetty-2.14.3-02.pom
#14 427.4 Progress (1): 4.1/4.5 kB
Progress (1): 4.5 kB
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#14 427.5 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-goodies/2.14.3-02/nexus-buildsupport-goodies-2.14.3-02.pom
#14 427.6 Progress (1): 3.6 kB
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#14 427.7 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-groovy/2.14.3-02/nexus-buildsupport-groovy-2.14.3-02.pom
#14 427.8 Progress (1): 3.1 kB
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#14 427.9 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-guice/2.14.3-02/nexus-buildsupport-guice-2.14.3-02.pom
#14 428.0 Progress (1): 3.5/3.7 kB
Progress (1): 3.7 kB
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#14 428.1 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-logging/2.14.3-02/nexus-buildsupport-logging-2.14.3-02.pom
#14 428.1 Progress (1): 3.3 kB
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#14 428.2 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-osg
#14 428.2 [output clipped, log limit 2MiB reached]
#14 531.5 SLF4J: No SLF4J providers were found.
#14 531.5 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 531.5 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 541.4s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.2s
#16 [12/13] RUN ant jars tools
#16 1.178 Buildfile: /bio-formats-build/bioformats/build.xml
#16 2.097 [echo] isSnapshot = true
#16 2.218
#16 2.218 copy-jars:
#16 2.218
#16 2.218 deps-formats-api:
#16 2.321 [echo] isSnapshot = true
#16 2.392
#16 2.392 install-pom:
#16 2.626 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 2.697 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 2.702 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.704
#16 2.704 jar-formats-api:
#16 2.855 [echo] isSnapshot = true
#16 3.062
#16 3.062 init-title:
#16 3.062 [echo] ----------=========== formats-api ===========----------
#16 3.062
#16 3.062 init-timestamp:
#16 3.067
#16 3.067 init:
#16 3.067
#16 3.067 copy-resources:
#16 3.068 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.084 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.087
#16 3.087 compile:
#16 3.318 [resolver:resolve] Resolving artifacts
#16 3.356 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.064 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.065 [javac] import loci.common.ReflectedUniverse;
#16 4.065 [javac] ^
#16 4.265 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.265 [javac] int currentIndex = r.getCoreIndex();
#16 4.265 [javac] ^
#16 4.265 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.265 [javac] r.setCoreIndex(coreIndex);
#16 4.265 [javac] ^
#16 4.266 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.266 [javac] r.setCoreIndex(currentIndex);
#16 4.266 [javac] ^
#16 4.366 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.366 [javac] public void setCoreIndex(int no) {
#16 4.366 [javac] ^
#16 4.366 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.366 [javac] public int getCoreIndex() {
#16 4.366 [javac] ^
#16 4.366 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.367 [javac] public int coreIndexToSeries(int index)
#16 4.367 [javac] ^
#16 4.367 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.367 [javac] public int seriesToCoreIndex(int series)
#16 4.367 [javac] ^
#16 4.367 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.367 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.367 [javac] ^
#16 4.467 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.468 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.468 [javac] ^
#16 4.468 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.468 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.468 [javac] ^
#16 4.468 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.468 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.468 [javac] ^
#16 4.468 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.468 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.468 [javac] ^
#16 4.568 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.568 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.569 [javac] ^
#16 4.569 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.569 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.569 [javac] ^
#16 4.569 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.569 [javac] public void setCoreIndex(int no) {
#16 4.569 [javac] ^
#16 4.569 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.569 [javac] public int getCoreIndex() {
#16 4.569 [javac] ^
#16 4.569 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.569 [javac] public int coreIndexToSeries(int index) {
#16 4.569 [javac] ^
#16 4.569 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.569 [javac] public int seriesToCoreIndex(int series) {
#16 4.570 [javac] ^
#16 4.570 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.570 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.570 [javac] ^
#16 4.670 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.670 [javac] return getReader().getCoreMetadataList();
#16 4.670 [javac] ^
#16 4.670 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.670 [javac] return getReader().getCoreIndex();
#16 4.670 [javac] ^
#16 4.670 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.670 [javac] getReader().setCoreIndex(no);
#16 4.671 [javac] ^
#16 4.671 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.671 [javac] return getReader().seriesToCoreIndex(series);
#16 4.671 [javac] ^
#16 4.671 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.671 [javac] return getReader().coreIndexToSeries(index);
#16 4.671 [javac] ^
#16 4.671 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.671 [javac] public void setCoreIndex(int no) {
#16 4.671 [javac] ^
#16 4.671 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.671 [javac] public int getCoreIndex() {
#16 4.672 [javac] ^
#16 4.672 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.672 [javac] public int coreIndexToSeries(int index) {
#16 4.672 [javac] ^
#16 4.672 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.672 [javac] public int seriesToCoreIndex(int series) {
#16 4.672 [javac] ^
#16 4.672 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.672 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.672 [javac] ^
#16 4.672 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.672 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.672 [javac] ^
#16 4.672 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.673 [javac] return reader.getCoreIndex();
#16 4.673 [javac] ^
#16 4.673 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.673 [javac] reader.setCoreIndex(no);
#16 4.673 [javac] ^
#16 4.673 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.673 [javac] return reader.seriesToCoreIndex(series);
#16 4.673 [javac] ^
#16 4.673 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.673 [javac] return reader.coreIndexToSeries(index);
#16 4.673 [javac] ^
#16 4.874 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.874 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.874 [javac] 35 warnings
#16 4.878
#16 4.878 formats-api.jar:
#16 4.878 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.907 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.943 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 4.948 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 4.972 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 4.973 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.976 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.976
#16 4.976 deps-turbojpeg:
#16 4.976
#16 4.976 jar-turbojpeg:
#16 5.093 [echo] isSnapshot = true
#16 5.279
#16 5.279 init-title:
#16 5.279 [echo] ----------=========== turbojpeg ===========----------
#16 5.279
#16 5.279 init-timestamp:
#16 5.279
#16 5.279 init:
#16 5.279
#16 5.279 copy-resources:
#16 5.280 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.281
#16 5.281 compile:
#16 5.293 [resolver:resolve] Resolving artifacts
#16 5.298 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.042
#16 6.042 jar:
#16 6.047 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.235 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 6.244 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 6.306 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 6.308 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.313 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.314
#16 6.314 deps-formats-bsd:
#16 6.314
#16 6.314 jar-formats-bsd:
#16 6.424 [echo] isSnapshot = true
#16 6.611
#16 6.611 init-title:
#16 6.611 [echo] ----------=========== formats-bsd ===========----------
#16 6.611
#16 6.611 init-timestamp:
#16 6.612
#16 6.612 init:
#16 6.612
#16 6.612 copy-resources:
#16 6.612 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.616 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.616
#16 6.616 compile:
#16 6.844 [resolver:resolve] Resolving artifacts
#16 6.874 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.983 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.983 [javac] import loci.common.ReflectedUniverse;
#16 7.983 [javac] ^
#16 8.383 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.383 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.383 [javac] ^
#16 8.384 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.384 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.384 [javac] ^
#16 8.384 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.384 [javac] int n = reader.getCoreMetadataList().size();
#16 8.384 [javac] ^
#16 8.384 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.384 [javac] reader.setCoreIndex(coreIndex);
#16 8.384 [javac] ^
#16 8.384 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.384 [javac] int n = reader.getCoreMetadataList().size();
#16 8.384 [javac] ^
#16 8.384 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.384 [javac] int n = reader.getCoreMetadataList().size();
#16 8.384 [javac] ^
#16 8.384 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.384 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.384 [javac] ^
#16 8.384 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.384 [javac] int n = reader.getCoreMetadataList().size();
#16 8.384 [javac] ^
#16 8.384 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.384 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.384 [javac] ^
#16 8.384 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.384 [javac] int n = reader.getCoreMetadataList().size();
#16 8.384 [javac] ^
#16 8.384 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.384 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.384 [javac] ^
#16 8.384 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.384 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.384 [javac] ^
#16 8.385 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.385 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.385 [javac] ^
#16 8.385 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.385 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.385 [javac] ^
#16 8.385 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.385 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.385 [javac] ^
#16 8.385 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.385 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.385 [javac] ^
#16 8.385 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.385 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.385 [javac] ^
#16 8.385 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.385 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.385 [javac] ^
#16 8.385 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.385 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.385 [javac] ^
#16 8.485 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.485 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.485 [javac] ^
#16 8.586 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.586 [javac] BitWriter out = new BitWriter();
#16 8.586 [javac] ^
#16 8.586 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.586 [javac] BitWriter out = new BitWriter();
#16 8.586 [javac] ^
#16 9.487 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.487 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.487 [javac] ^
#16 9.587 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.587 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.587 [javac] ^
#16 9.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.687 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.687 [javac] ^
#16 9.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.687 [javac] protected ReflectedUniverse r;
#16 9.687 [javac] ^
#16 9.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.687 [javac] r = new ReflectedUniverse();
#16 9.687 [javac] ^
#16 9.687 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 9.687 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.688 [javac] ^
#16 9.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.688 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.688 [javac] ^
#16 9.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 9.688 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.688 [javac] ^
#16 9.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 9.688 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.688 [javac] ^
#16 9.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 9.688 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.688 [javac] ^
#16 9.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 9.688 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.688 [javac] ^
#16 9.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 9.688 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.688 [javac] ^
#16 9.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 9.688 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.688 [javac] ^
#16 9.688 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 9.688 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.688 [javac] ^
#16 9.789 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 9.789 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 9.789 [javac] ^
#16 9.889 [javac] Note: Some input files use unchecked or unsafe operations.
#16 9.889 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 9.889 [javac] 38 warnings
#16 10.08
#16 10.08 formats-bsd.jar:
#16 10.09 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.20 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 10.21 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 10.24 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 10.24 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 10.25 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.25
#16 10.25 deps-formats-gpl:
#16 10.25
#16 10.25 jar-formats-gpl:
#16 10.35 [echo] isSnapshot = true
#16 10.54
#16 10.54 init-title:
#16 10.54 [echo] ----------=========== formats-gpl ===========----------
#16 10.54
#16 10.54 init-timestamp:
#16 10.54
#16 10.54 init:
#16 10.54
#16 10.54 copy-resources:
#16 10.54 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.54 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.54
#16 10.54 compile:
#16 10.81 [resolver:resolve] Resolving artifacts
#16 11.10 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.10 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.41 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 11.41 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.48 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.48 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.53 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.64 [javac] import loci.formats.codec.BitWriter;
#16 12.64 [javac] ^
#16 12.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.64 [javac] import loci.formats.codec.BitWriter;
#16 12.64 [javac] ^
#16 14.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 14.24 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 14.24 [javac] ^
#16 14.24 [javac] cast to Object for a varargs call
#16 14.24 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 14.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.34 [javac] BitWriter bits = null;
#16 14.34 [javac] ^
#16 14.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.34 [javac] bits = new BitWriter(planes[index].length / 8);
#16 14.34 [javac] ^
#16 14.54 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 14.54 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 14.54 [javac] ^
#16 14.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.94 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.94 [javac] ^
#16 14.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.94 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.94 [javac] ^
#16 15.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 15.14 [javac] List<Attribute> attributes = variable.getAttributes();
#16 15.14 [javac] ^
#16 15.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.14 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 15.14 [javac] ^
#16 15.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.14 [javac] String groupName = group.getName();
#16 15.14 [javac] ^
#16 15.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 15.14 [javac] List<Attribute> attributes = group.getAttributes();
#16 15.14 [javac] ^
#16 15.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.14 [javac] String attributeName = attribute.getName();
#16 15.14 [javac] ^
#16 15.14 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.14 [javac] String variableName = variable.getName();
#16 15.14 [javac] ^
#16 15.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 15.21 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 15.21 [javac] ^
#16 15.21 [javac] Note: Some input files use unchecked or unsafe operations.
#16 15.21 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 15.21 [javac] 15 warnings
#16 15.21
#16 15.21 formats-gpl.jar:
#16 15.22 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 15.36 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 15.37 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 15.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 15.38 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 15.38 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 15.38
#16 15.38 deps-bio-formats-plugins:
#16 15.38
#16 15.38 jar-bio-formats-plugins:
#16 15.48 [echo] isSnapshot = true
#16 15.66
#16 15.66 init-title:
#16 15.66 [echo] ----------=========== bio-formats_plugins ===========----------
#16 15.66
#16 15.66 init-timestamp:
#16 15.66
#16 15.66 init:
#16 15.66
#16 15.66 copy-resources:
#16 15.66 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.67 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.67
#16 15.67 compile:
#16 15.93 [resolver:resolve] Resolving artifacts
#16 15.94 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.75 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.75 [javac] import loci.common.ReflectedUniverse;
#16 16.75 [javac] ^
#16 16.75 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.75 [javac] import loci.common.ReflectedUniverse;
#16 16.75 [javac] ^
#16 17.25 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 17.25 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 17.25 [javac] ^
#16 17.35 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.35 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.35 [javac] ^
#16 17.35 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.35 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.35 [javac] ^
#16 17.45 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.45 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.45 [javac] ^
#16 17.45 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.45 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.45 [javac] ^
#16 17.75 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 17.75 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.75 [javac] 7 warnings
#16 17.80
#16 17.80 bio-formats-plugins.jar:
#16 17.80 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 17.83 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 17.84 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 17.85 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 17.85 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 17.85 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 17.85
#16 17.85 deps-bio-formats-tools:
#16 17.85
#16 17.85 jar-bio-formats-tools:
#16 17.95 [echo] isSnapshot = true
#16 18.13
#16 18.13 init-title:
#16 18.13 [echo] ----------=========== bio-formats-tools ===========----------
#16 18.13
#16 18.13 init-timestamp:
#16 18.13
#16 18.13 init:
#16 18.13
#16 18.13 copy-resources:
#16 18.13 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.13
#16 18.13 compile:
#16 18.37 [resolver:resolve] Resolving artifacts
#16 18.38 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.36
#16 19.36 bio-formats-tools.jar:
#16 19.36 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 19.37 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 19.37 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 19.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 19.39 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 19.39 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 19.39
#16 19.39 deps-tests:
#16 19.39
#16 19.39 jar-tests:
#16 19.49 [echo] isSnapshot = true
#16 19.68
#16 19.68 init-title:
#16 19.68 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 19.68
#16 19.68 init-timestamp:
#16 19.68
#16 19.68 init:
#16 19.68
#16 19.68 copy-resources:
#16 19.68 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 19.68
#16 19.68 compile:
#16 20.03 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.11 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.12 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.76 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.21 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 21.25 [resolver:resolve] Resolving artifacts
#16 21.26 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.30 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.32 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.72 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.09 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 22.09 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.01 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 23.01 [javac] int index = unflattenedReader.getCoreIndex();
#16 23.01 [javac] ^
#16 23.01 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 23.01 [javac] reader.setCoreIndex(index);
#16 23.01 [javac] ^
#16 23.21 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 23.21 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 23.21 [javac] ^
#16 23.21 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 23.21 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 23.21 [javac] ^
#16 23.51 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 23.51 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 23.51 [javac] ^
#16 23.51 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 23.51 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 23.51 [javac] ^
#16 23.51 [javac] Note: Some input files use unchecked or unsafe operations.
#16 23.51 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 23.51 [javac] 6 warnings
#16 23.52
#16 23.52 tests.jar:
#16 23.52 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 23.53 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 23.54 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 23.54 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 23.54 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 23.54 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 23.54
#16 23.54 jars:
#16 23.54
#16 23.54 copy-jars:
#16 23.55
#16 23.55 deps-formats-api:
#16 23.60 [echo] isSnapshot = true
#16 23.65
#16 23.65 install-pom:
#16 23.82 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 23.82 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 23.83 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 23.83
#16 23.83 jar-formats-api:
#16 23.93 [echo] isSnapshot = true
#16 24.11
#16 24.11 init-title:
#16 24.11 [echo] ----------=========== formats-api ===========----------
#16 24.11
#16 24.11 init-timestamp:
#16 24.11
#16 24.11 init:
#16 24.11
#16 24.11 copy-resources:
#16 24.11
#16 24.11 compile:
#16 24.28 [resolver:resolve] Resolving artifacts
#16 24.29
#16 24.29 formats-api.jar:
#16 24.31 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 24.31 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 24.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 24.31 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.32 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 24.32
#16 24.32 deps-turbojpeg:
#16 24.32
#16 24.32 jar-turbojpeg:
#16 24.59 [echo] isSnapshot = true
#16 24.78
#16 24.78 init-title:
#16 24.78 [echo] ----------=========== turbojpeg ===========----------
#16 24.78
#16 24.78 init-timestamp:
#16 24.78
#16 24.78 init:
#16 24.78
#16 24.78 copy-resources:
#16 24.78
#16 24.78 compile:
#16 24.79 [resolver:resolve] Resolving artifacts
#16 24.79
#16 24.79 jar:
#16 24.80 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 24.81 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 24.81 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 24.81 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.82 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 24.82
#16 24.82 deps-formats-bsd:
#16 24.82
#16 24.82 jar-formats-bsd:
#16 24.92 [echo] isSnapshot = true
#16 25.12
#16 25.12 init-title:
#16 25.12 [echo] ----------=========== formats-bsd ===========----------
#16 25.12
#16 25.12 init-timestamp:
#16 25.12
#16 25.12 init:
#16 25.12
#16 25.12 copy-resources:
#16 25.12
#16 25.12 compile:
#16 25.36 [resolver:resolve] Resolving artifacts
#16 25.39
#16 25.39 formats-bsd.jar:
#16 25.44 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 25.45 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 25.45 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 25.45 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.45 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 25.45
#16 25.45 deps-formats-gpl:
#16 25.45
#16 25.45 jar-formats-gpl:
#16 25.56 [echo] isSnapshot = true
#16 25.76
#16 25.76 init-title:
#16 25.76 [echo] ----------=========== formats-gpl ===========----------
#16 25.76
#16 25.76 init-timestamp:
#16 25.76
#16 25.76 init:
#16 25.76
#16 25.76 copy-resources:
#16 25.76
#16 25.76 compile:
#16 26.05 [resolver:resolve] Resolving artifacts
#16 26.07
#16 26.07 formats-gpl.jar:
#16 26.13 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 26.13 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 26.13 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 26.14 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.14 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.14
#16 26.14 deps-bio-formats-plugins:
#16 26.14
#16 26.14 jar-bio-formats-plugins:
#16 26.24 [echo] isSnapshot = true
#16 26.43
#16 26.43 init-title:
#16 26.43 [echo] ----------=========== bio-formats_plugins ===========----------
#16 26.43
#16 26.43 init-timestamp:
#16 26.43
#16 26.43 init:
#16 26.43
#16 26.43 copy-resources:
#16 26.43
#16 26.43 compile:
#16 26.73 [resolver:resolve] Resolving artifacts
#16 26.75
#16 26.75 bio-formats-plugins.jar:
#16 26.76 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 26.77 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 26.77 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 26.77 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.77 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 26.78
#16 26.78 deps-bio-formats-tools:
#16 26.78
#16 26.78 jar-bio-formats-tools:
#16 26.88 [echo] isSnapshot = true
#16 27.06
#16 27.06 init-title:
#16 27.06 [echo] ----------=========== bio-formats-tools ===========----------
#16 27.06
#16 27.06 init-timestamp:
#16 27.06
#16 27.06 init:
#16 27.06
#16 27.06 copy-resources:
#16 27.06
#16 27.06 compile:
#16 27.32 [resolver:resolve] Resolving artifacts
#16 27.33
#16 27.33 bio-formats-tools.jar:
#16 27.33 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 27.34 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 27.34 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 27.34 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.34 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.34
#16 27.34 deps-tests:
#16 27.34
#16 27.34 jar-tests:
#16 27.44 [echo] isSnapshot = true
#16 27.62
#16 27.62 init-title:
#16 27.62 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 27.62
#16 27.62 init-timestamp:
#16 27.62
#16 27.62 init:
#16 27.62
#16 27.62 copy-resources:
#16 27.62
#16 27.62 compile:
#16 27.88 [resolver:resolve] Resolving artifacts
#16 27.90
#16 27.90 tests.jar:
#16 27.91 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 27.91 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 27.91 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 27.91 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.92 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 27.92
#16 27.92 jars:
#16 27.92
#16 27.92 tools:
#16 27.92 [echo] ----------=========== bioformats_package ===========----------
#16 28.02 [echo] isSnapshot = true
#16 28.20
#16 28.20 init-timestamp:
#16 28.20
#16 28.20 bundle:
#16 28.45 [resolver:resolve] Resolving artifacts
#16 28.46 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.49 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.24-SNAPSHOT/ome-common-6.0.24-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.52 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.54 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.55 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.61 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.63 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.68 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.69 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.92 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.98 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.00 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.06 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.07 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.08 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.08 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.26 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.77 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.77 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.77 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.78 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.87 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.87 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.88 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.94 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.00 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.01 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.02 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.17 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.20 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.28 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.32 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.32 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.36 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.38 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.84 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.86 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.30 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.41 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.43 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.45 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.45 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.76 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.92 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.99 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.44 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.20 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.20 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.34 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.74 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.32 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.33 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.45 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.51 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.52 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.53 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.70 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.72 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.72 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.76 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.77 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.80 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.26 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.45 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.84 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 42.84 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.56 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 43.57 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 43.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 43.62 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 43.62 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 43.70
#16 43.70 BUILD SUCCESSFUL
#16 43.70 Total time: 42 seconds
#16 DONE 43.9s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s
#18 exporting to image
#18 exporting layers
#18 exporting layers 8.5s done
#18 writing image sha256:8fb523556684bf90e30cd078009c47feab25c428c8932f2dfaf081808d5e5d22 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 8.5s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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