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#14 410.0 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.3/maven-scm-provider-git-commons-1.3.jar (37 kB at 692 kB/s)
#14 410.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.8/nexus-staging-maven-plugin-1.6.8.pom
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#14 410.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-staging/1.6.8/nexus-staging-1.6.8.pom
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#14 410.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-maven-plugins/1.6.8/nexus-maven-plugins-1.6.8.pom
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#14 410.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/public-parent/6/public-parent-6.pom
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#14 410.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/buildsupport/6/buildsupport-6.pom
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#14 410.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-common/1.6.8/nexus-common-1.6.8.pom
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#14 410.3 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/14.0.1/guava-14.0.1.pom
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#14 410.3 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/14.0.1/guava-parent-14.0.1.pom
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#14 410.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.14.3-02/nexus-client-core-2.14.3-02.pom
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#14 410.4 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-parent/2.14.3-02/nexus-parent-2.14.3-02.pom
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#14 411.5 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-gwt/2.14.3-02/nexus-buildsupport-gwt-2.14.3-02.pom
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#14 411.7 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-httpclient/2.14.3-02/nexus-buildsupport-httpclient-2.14.3-02.pom
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#14 411.9 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-insight/2.14.3-02/nexus-buildsupport-insight-2.14.3-02.pom
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#14 412.1 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-maven/2.14.3-02/nexus-buildsupport-maven-2.14.3-02.pom
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#14 412.2 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-messaging/2.14.3-02/nexus-buildsupport-messaging-2.14.3-02.pom
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#14 412.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-bouncycastle/2.14.3-02/nexus-buildsupport-bouncycastle-2.14.3-02.pom
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#14 412.8 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-jetty/2.14.3-02/nexus-buildsupport-jetty-2.14.3-02.pom
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#14 413.0 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-goodies/2.14.3-02/nexus-buildsupport-goodies-2.14.3-02.pom
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#14 413.2 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-groovy/2.14.3-02/nexus-buildsupport-groovy-2.14.3-02.pom
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#14 413.5 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-logging/2.14.3-02/nexus-buildsupport-logging-2.14.3-02.pom
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#14 413.7 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-osgi/2.14.3-02/nexus-buildsupport-osgi-2.14.3-02.pom
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#14 413.9 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-other/2.14.3-02/nexus-buildsupport-other-2.14.3-02.pom
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#14 414.1 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-plexus/2.14.3-02/nexus-buildsupport-plexus-2.14.3-02.pom
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#14 414.3 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-rest/2.14.3-02/nexus-buildsupport-rest-2.14.3-02.pom
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#14 414.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-metrics/2.14.3-02/nexus-buildsupport-metrics-2.14.3-02.pom
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#14 414.8 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-restlet1x-model/2.14.3-02/nexus-restlet1x-model-2.14.3-02.pom
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#14 414.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-plugins/2.14.3-02/nexus-plugins-2.14.3-02.pom
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#14 414.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/3.0.4/maven-model-3.0.4.pom
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#14 415.6 Progress (1): 4.1/6.2 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/sun/jersey/contribs/jersey-apache-client4/1.17.1/jersey-apache-client4-1.17.1.pom (6.2 kB at 249 kB/s)
#14 415.6 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/contribs/jersey-contribs/1.17.1/jersey-contribs-1.17.1.pom
#14 415.6 Progress (1): 3.6 kB
Downloaded from central: https://repo.maven.apache.org/maven2/com/sun/jersey/contribs/jersey-contribs/1.17.1/jersey-contribs-1.17.1.pom (3.6 kB at 137 kB/s)
#14 415.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.3.5/httpclient-4.3.5.pom
#14 415.7 Progress (1): 4.1/5.2 kB
Progress (1): 5.2 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.3.5/httpclient-4.3.5.pom (5.2 kB at 208 kB/s)
#14 415.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpcomponents-client/4.3.5/httpcomponents-client-4.3.5.pom
#14 415.7 Progress (1): 4.1/15 kB
Progress (1): 8.2/15 kB
Progress (1): 12/15 kB
Progress (1)
#14 415.7 [output clipped, log limit 2MiB reached]
#14 511.5 SLF4J: No SLF4J providers were found.
#14 511.5 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 511.5 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 525.3s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.569 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.050 [echo] isSnapshot = true
#16 1.157
#16 1.157 copy-jars:
#16 1.157
#16 1.157 deps-formats-api:
#16 1.244 [echo] isSnapshot = true
#16 1.306
#16 1.306 install-pom:
#16 1.520 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 1.569 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 1.574 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.576
#16 1.576 jar-formats-api:
#16 1.698 [echo] isSnapshot = true
#16 1.893
#16 1.893 init-title:
#16 1.893 [echo] ----------=========== formats-api ===========----------
#16 1.893
#16 1.893 init-timestamp:
#16 1.897
#16 1.897 init:
#16 1.897
#16 1.897 copy-resources:
#16 1.898 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.914 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.916
#16 1.916 compile:
#16 2.110 [resolver:resolve] Resolving artifacts
#16 2.208 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.834 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.834 [javac] import loci.common.ReflectedUniverse;
#16 2.834 [javac] ^
#16 2.934 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.934 [javac] int currentIndex = r.getCoreIndex();
#16 2.934 [javac] ^
#16 2.934 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.934 [javac] r.setCoreIndex(coreIndex);
#16 2.934 [javac] ^
#16 2.935 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.935 [javac] r.setCoreIndex(currentIndex);
#16 2.935 [javac] ^
#16 3.135 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.135 [javac] public void setCoreIndex(int no) {
#16 3.135 [javac] ^
#16 3.135 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.135 [javac] public int getCoreIndex() {
#16 3.135 [javac] ^
#16 3.135 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.136 [javac] public int coreIndexToSeries(int index)
#16 3.136 [javac] ^
#16 3.136 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.136 [javac] public int seriesToCoreIndex(int series)
#16 3.136 [javac] ^
#16 3.136 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.136 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.136 [javac] ^
#16 3.136 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.136 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.136 [javac] ^
#16 3.137 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.137 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.137 [javac] ^
#16 3.237 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.237 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.237 [javac] ^
#16 3.237 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.237 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.238 [javac] ^
#16 3.238 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.238 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.238 [javac] ^
#16 3.238 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.238 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.238 [javac] ^
#16 3.338 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.338 [javac] public void setCoreIndex(int no) {
#16 3.338 [javac] ^
#16 3.338 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.338 [javac] public int getCoreIndex() {
#16 3.339 [javac] ^
#16 3.339 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.339 [javac] public int coreIndexToSeries(int index) {
#16 3.339 [javac] ^
#16 3.339 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.339 [javac] public int seriesToCoreIndex(int series) {
#16 3.339 [javac] ^
#16 3.339 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.339 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.339 [javac] ^
#16 3.339 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.339 [javac] return getReader().getCoreMetadataList();
#16 3.339 [javac] ^
#16 3.339 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.339 [javac] return getReader().getCoreIndex();
#16 3.340 [javac] ^
#16 3.340 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.340 [javac] getReader().setCoreIndex(no);
#16 3.340 [javac] ^
#16 3.340 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.340 [javac] return getReader().seriesToCoreIndex(series);
#16 3.340 [javac] ^
#16 3.340 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.340 [javac] return getReader().coreIndexToSeries(index);
#16 3.340 [javac] ^
#16 3.440 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.441 [javac] public void setCoreIndex(int no) {
#16 3.441 [javac] ^
#16 3.441 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.441 [javac] public int getCoreIndex() {
#16 3.441 [javac] ^
#16 3.441 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.441 [javac] public int coreIndexToSeries(int index) {
#16 3.441 [javac] ^
#16 3.441 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.441 [javac] public int seriesToCoreIndex(int series) {
#16 3.441 [javac] ^
#16 3.441 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.441 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.441 [javac] ^
#16 3.441 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.441 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.441 [javac] ^
#16 3.441 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.441 [javac] return reader.getCoreIndex();
#16 3.441 [javac] ^
#16 3.441 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.442 [javac] reader.setCoreIndex(no);
#16 3.442 [javac] ^
#16 3.442 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.442 [javac] return reader.seriesToCoreIndex(series);
#16 3.442 [javac] ^
#16 3.442 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.442 [javac] return reader.coreIndexToSeries(index);
#16 3.442 [javac] ^
#16 3.609 [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.609 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.609 [javac] 35 warnings
#16 3.609
#16 3.609 formats-api.jar:
#16 3.610 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.634 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.666 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 3.670 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 3.714 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 3.742 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 3.744 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.745
#16 3.745 deps-turbojpeg:
#16 3.745
#16 3.745 jar-turbojpeg:
#16 3.857 [echo] isSnapshot = true
#16 4.036
#16 4.036 init-title:
#16 4.036 [echo] ----------=========== turbojpeg ===========----------
#16 4.036
#16 4.036 init-timestamp:
#16 4.037
#16 4.037 init:
#16 4.037
#16 4.037 copy-resources:
#16 4.037 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.038
#16 4.038 compile:
#16 4.050 [resolver:resolve] Resolving artifacts
#16 4.054 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.766
#16 4.766 jar:
#16 4.771 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 4.958 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 4.967 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 4.969 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 4.972 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 4.976 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 4.977
#16 4.977 deps-formats-bsd:
#16 4.977
#16 4.977 jar-formats-bsd:
#16 5.081 [echo] isSnapshot = true
#16 5.263
#16 5.263 init-title:
#16 5.263 [echo] ----------=========== formats-bsd ===========----------
#16 5.263
#16 5.263 init-timestamp:
#16 5.264
#16 5.264 init:
#16 5.264
#16 5.264 copy-resources:
#16 5.264 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.267 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.268
#16 5.268 compile:
#16 5.487 [resolver:resolve] Resolving artifacts
#16 5.521 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.531 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.531 [javac] import loci.common.ReflectedUniverse;
#16 6.531 [javac] ^
#16 6.831 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.831 [javac] core.size() != reader.getCoreMetadataList().size())
#16 6.831 [javac] ^
#16 6.831 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.831 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.832 [javac] ^
#16 6.832 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.832 [javac] int n = reader.getCoreMetadataList().size();
#16 6.832 [javac] ^
#16 6.832 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.832 [javac] reader.setCoreIndex(coreIndex);
#16 6.832 [javac] ^
#16 6.832 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.832 [javac] int n = reader.getCoreMetadataList().size();
#16 6.832 [javac] ^
#16 6.832 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.832 [javac] int n = reader.getCoreMetadataList().size();
#16 6.832 [javac] ^
#16 6.832 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.832 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 6.832 [javac] ^
#16 6.832 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.832 [javac] int n = reader.getCoreMetadataList().size();
#16 6.832 [javac] ^
#16 6.833 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.833 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 6.833 [javac] ^
#16 6.833 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.833 [javac] int n = reader.getCoreMetadataList().size();
#16 6.833 [javac] ^
#16 6.833 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.833 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 6.833 [javac] ^
#16 6.833 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.833 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.833 [javac] ^
#16 6.833 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.833 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.833 [javac] ^
#16 6.833 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.833 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 6.834 [javac] ^
#16 6.934 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.934 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 6.934 [javac] ^
#16 6.934 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.934 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 6.934 [javac] ^
#16 6.934 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.934 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 6.934 [javac] ^
#16 6.934 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.934 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 6.934 [javac] ^
#16 6.934 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.934 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 6.934 [javac] ^
#16 7.035 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.035 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.035 [javac] ^
#16 7.135 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.135 [javac] BitWriter out = new BitWriter();
#16 7.135 [javac] ^
#16 7.135 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.135 [javac] BitWriter out = new BitWriter();
#16 7.135 [javac] ^
#16 8.036 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.036 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 8.036 [javac] ^
#16 8.036 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 8.036 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 8.036 [javac] ^
#16 8.136 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.136 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 8.136 [javac] ^
#16 8.136 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.136 [javac] protected ReflectedUniverse r;
#16 8.136 [javac] ^
#16 8.136 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.136 [javac] r = new ReflectedUniverse();
#16 8.136 [javac] ^
#16 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 8.237 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 8.237 [javac] ^
#16 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 8.237 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 8.237 [javac] ^
#16 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 8.237 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 8.237 [javac] ^
#16 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 8.237 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 8.237 [javac] ^
#16 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 8.237 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 8.237 [javac] ^
#16 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 8.237 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 8.237 [javac] ^
#16 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 8.237 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 8.237 [javac] ^
#16 8.237 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 8.238 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 8.238 [javac] ^
#16 8.238 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 8.238 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 8.238 [javac] ^
#16 8.338 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 8.338 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 8.338 [javac] ^
#16 8.338 [javac] Note: Some input files use unchecked or unsafe operations.
#16 8.338 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 8.338 [javac] 38 warnings
#16 8.603
#16 8.603 formats-bsd.jar:
#16 8.612 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 8.723 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 8.727 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 8.781 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 8.783 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 8.785 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 8.786
#16 8.786 deps-formats-gpl:
#16 8.786
#16 8.786 jar-formats-gpl:
#16 8.886 [echo] isSnapshot = true
#16 9.064
#16 9.064 init-title:
#16 9.064 [echo] ----------=========== formats-gpl ===========----------
#16 9.064
#16 9.064 init-timestamp:
#16 9.064
#16 9.064 init:
#16 9.064
#16 9.064 copy-resources:
#16 9.064 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.066 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.066
#16 9.066 compile:
#16 9.542 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 9.797 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 9.830 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 9.835 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 9.850 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 9.855 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 9.867 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 9.881 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 9.887 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 9.931 [resolver:resolve] Resolving artifacts
#16 9.940 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 9.941 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 9.985 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 9.986 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 9.999 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 9.999 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.02 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.12 [javac] import loci.formats.codec.BitWriter;
#16 11.12 [javac] ^
#16 11.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.12 [javac] import loci.formats.codec.BitWriter;
#16 11.12 [javac] ^
#16 12.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 12.73 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 12.73 [javac] ^
#16 12.73 [javac] cast to Object for a varargs call
#16 12.73 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 12.83 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.83 [javac] BitWriter bits = null;
#16 12.83 [javac] ^
#16 12.83 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.83 [javac] bits = new BitWriter(planes[index].length / 8);
#16 12.83 [javac] ^
#16 13.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 13.13 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 13.13 [javac] ^
#16 13.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.43 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 13.43 [javac] ^
#16 13.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.43 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 13.43 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:169: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 13.73 [javac] Variable variable = group.findVariable(variableName);
#16 13.73 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:196: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 13.73 [javac] Variable variable = group.findVariable(variableName);
#16 13.73 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 13.73 [javac] List<Attribute> attributes = variable.getAttributes();
#16 13.73 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 13.73 [javac] String groupName = group.getName();
#16 13.73 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 13.73 [javac] List<Attribute> attributes = group.getAttributes();
#16 13.73 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 13.73 [javac] String variableName = variable.getName();
#16 13.73 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:269: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 13.73 [javac] Group nextParent = parent.findGroup(token);
#16 13.73 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 13.73 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 13.73 [javac] ^
#16 13.83 [javac] Note: Some input files use unchecked or unsafe operations.
#16 13.83 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 13.83 [javac] 16 warnings
#16 13.83
#16 13.83 formats-gpl.jar:
#16 13.84 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 13.98 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 13.98 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 14.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 14.08 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 14.08 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 14.08
#16 14.08 deps-bio-formats-plugins:
#16 14.08
#16 14.08 jar-bio-formats-plugins:
#16 14.18 [echo] isSnapshot = true
#16 14.34
#16 14.34 init-title:
#16 14.34 [echo] ----------=========== bio-formats_plugins ===========----------
#16 14.34
#16 14.34 init-timestamp:
#16 14.34
#16 14.34 init:
#16 14.34
#16 14.34 copy-resources:
#16 14.35 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 14.35 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 14.35
#16 14.35 compile:
#16 14.63 [resolver:resolve] Resolving artifacts
#16 14.64 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.55 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.55 [javac] import loci.common.ReflectedUniverse;
#16 15.55 [javac] ^
#16 15.55 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.55 [javac] import loci.common.ReflectedUniverse;
#16 15.55 [javac] ^
#16 15.95 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 15.95 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 15.95 [javac] ^
#16 16.15 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.15 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 16.15 [javac] ^
#16 16.15 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.15 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 16.15 [javac] ^
#16 16.25 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.25 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 16.25 [javac] ^
#16 16.25 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.25 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 16.25 [javac] ^
#16 16.54 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 16.54 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.54 [javac] 7 warnings
#16 16.54
#16 16.54 bio-formats-plugins.jar:
#16 16.54 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 16.58 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 16.58 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 16.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 16.59 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 16.59 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 16.59
#16 16.59 deps-bio-formats-tools:
#16 16.59
#16 16.59 jar-bio-formats-tools:
#16 16.72 [echo] isSnapshot = true
#16 16.89
#16 16.89 init-title:
#16 16.89 [echo] ----------=========== bio-formats-tools ===========----------
#16 16.89
#16 16.89 init-timestamp:
#16 16.89
#16 16.89 init:
#16 16.89
#16 16.89 copy-resources:
#16 16.90 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 16.90
#16 16.90 compile:
#16 17.14 [resolver:resolve] Resolving artifacts
#16 17.15 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.12
#16 18.12 bio-formats-tools.jar:
#16 18.12 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 18.13 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 18.13 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 18.13 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 18.13 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 18.14 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 18.14
#16 18.14 deps-tests:
#16 18.14
#16 18.14 jar-tests:
#16 18.24 [echo] isSnapshot = true
#16 18.42
#16 18.42 init-title:
#16 18.42 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 18.42
#16 18.42 init-timestamp:
#16 18.42
#16 18.42 init:
#16 18.42
#16 18.42 copy-resources:
#16 18.42 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 18.42
#16 18.42 compile:
#16 18.76 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 18.84 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 18.85 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.48 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.97 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 19.99 [resolver:resolve] Resolving artifacts
#16 20.00 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.04 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.05 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.45 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.82 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 20.82 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.74 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 21.74 [javac] int index = unflattenedReader.getCoreIndex();
#16 21.74 [javac] ^
#16 21.74 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 21.74 [javac] reader.setCoreIndex(index);
#16 21.74 [javac] ^
#16 21.94 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2259: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 21.94 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 21.94 [javac] ^
#16 21.94 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2425: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 21.94 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 21.94 [javac] ^
#16 22.22 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 22.22 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 22.22 [javac] ^
#16 22.22 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 22.22 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 22.22 [javac] ^
#16 22.22 [javac] Note: Some input files use unchecked or unsafe operations.
#16 22.22 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 22.22 [javac] 6 warnings
#16 22.22
#16 22.22 tests.jar:
#16 22.23 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 22.24 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 22.24 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 22.24 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 22.25 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 22.25 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 22.25
#16 22.25 jars:
#16 22.25
#16 22.25 copy-jars:
#16 22.25
#16 22.25 deps-formats-api:
#16 22.30 [echo] isSnapshot = true
#16 22.35
#16 22.35 install-pom:
#16 22.52 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 22.52 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 22.53 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 22.53
#16 22.53 jar-formats-api:
#16 22.62 [echo] isSnapshot = true
#16 22.80
#16 22.80 init-title:
#16 22.80 [echo] ----------=========== formats-api ===========----------
#16 22.80
#16 22.80 init-timestamp:
#16 22.80
#16 22.80 init:
#16 22.80
#16 22.80 copy-resources:
#16 22.80
#16 22.80 compile:
#16 22.96 [resolver:resolve] Resolving artifacts
#16 22.97
#16 22.97 formats-api.jar:
#16 22.99 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 22.99 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 22.99 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 22.99 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 22.99 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 22.99
#16 22.99 deps-turbojpeg:
#16 22.99
#16 22.99 jar-turbojpeg:
#16 23.27 [echo] isSnapshot = true
#16 23.44
#16 23.44 init-title:
#16 23.44 [echo] ----------=========== turbojpeg ===========----------
#16 23.44
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#16 23.44
#16 23.44 init:
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#16 23.44
#16 23.44 compile:
#16 23.45 [resolver:resolve] Resolving artifacts
#16 23.46
#16 23.46 jar:
#16 23.46 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 23.47 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 23.47 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 23.47 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 23.48 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 23.48
#16 23.48 deps-formats-bsd:
#16 23.48
#16 23.48 jar-formats-bsd:
#16 23.57 [echo] isSnapshot = true
#16 23.74
#16 23.74 init-title:
#16 23.74 [echo] ----------=========== formats-bsd ===========----------
#16 23.74
#16 23.74 init-timestamp:
#16 23.74
#16 23.74 init:
#16 23.74
#16 23.74 copy-resources:
#16 23.75
#16 23.75 compile:
#16 23.95 [resolver:resolve] Resolving artifacts
#16 23.97
#16 23.97 formats-bsd.jar:
#16 24.00 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 24.01 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 24.02 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 24.02 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.02 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 24.02
#16 24.02 deps-formats-gpl:
#16 24.02
#16 24.02 jar-formats-gpl:
#16 24.11 [echo] isSnapshot = true
#16 24.28
#16 24.28 init-title:
#16 24.28 [echo] ----------=========== formats-gpl ===========----------
#16 24.28
#16 24.28 init-timestamp:
#16 24.28
#16 24.28 init:
#16 24.28
#16 24.28 copy-resources:
#16 24.28
#16 24.28 compile:
#16 24.52 [resolver:resolve] Resolving artifacts
#16 24.54
#16 24.54 formats-gpl.jar:
#16 24.58 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 24.58 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 24.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 24.59 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.59 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 24.59
#16 24.59 deps-bio-formats-plugins:
#16 24.59
#16 24.59 jar-bio-formats-plugins:
#16 24.68 [echo] isSnapshot = true
#16 24.85
#16 24.85 init-title:
#16 24.85 [echo] ----------=========== bio-formats_plugins ===========----------
#16 24.85
#16 24.85 init-timestamp:
#16 24.85
#16 24.85 init:
#16 24.85
#16 24.85 copy-resources:
#16 24.85
#16 24.85 compile:
#16 25.10 [resolver:resolve] Resolving artifacts
#16 25.12
#16 25.12 bio-formats-plugins.jar:
#16 25.13 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 25.13 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 25.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 25.14 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.14 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 25.14
#16 25.14 deps-bio-formats-tools:
#16 25.14
#16 25.14 jar-bio-formats-tools:
#16 25.23 [echo] isSnapshot = true
#16 25.40
#16 25.40 init-title:
#16 25.40 [echo] ----------=========== bio-formats-tools ===========----------
#16 25.40
#16 25.40 init-timestamp:
#16 25.40
#16 25.40 init:
#16 25.40
#16 25.40 copy-resources:
#16 25.40
#16 25.40 compile:
#16 25.64 [resolver:resolve] Resolving artifacts
#16 25.65
#16 25.65 bio-formats-tools.jar:
#16 25.66 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 25.66 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 25.67 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 25.67 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.67 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 25.67
#16 25.67 deps-tests:
#16 25.67
#16 25.67 jar-tests:
#16 25.76 [echo] isSnapshot = true
#16 25.93
#16 25.93 init-title:
#16 25.93 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 25.93
#16 25.93 init-timestamp:
#16 25.93
#16 25.93 init:
#16 25.93
#16 25.93 copy-resources:
#16 25.93
#16 25.93 compile:
#16 26.18 [resolver:resolve] Resolving artifacts
#16 26.19
#16 26.19 tests.jar:
#16 26.20 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 26.21 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 26.21 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 26.22 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.22 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.22
#16 26.22 jars:
#16 26.22
#16 26.22 tools:
#16 26.22 [echo] ----------=========== bioformats_package ===========----------
#16 26.32 [echo] isSnapshot = true
#16 26.50
#16 26.50 init-timestamp:
#16 26.50
#16 26.50 bundle:
#16 26.75 [resolver:resolve] Resolving artifacts
#16 26.76 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.79 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.25-SNAPSHOT/ome-common-6.0.25-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.85 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.88 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.91 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.04 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.06 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.12 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.13 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.35 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.49 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.51 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.56 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.57 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.59 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.60 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.77 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.27 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.28 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.28 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.29 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.38 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.38 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.39 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.45 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.51 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.52 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.54 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.68 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.72 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.79 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.83 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.84 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.88 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.90 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.36 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.38 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.41 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.49 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.60 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.62 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.64 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.64 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.89 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.97 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.03 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.13 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.15 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.15 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.36 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.37 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.86 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.87 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.99 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.05 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.06 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.07 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.13 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.31 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.56 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.57 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.59 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.59 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.73 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.18 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.31 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.65 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 38.71 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.44 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 39.45 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 39.45 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 39.49 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 39.49 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 39.51
#16 39.51 BUILD SUCCESSFUL
#16 39.51 Total time: 38 seconds
#16 DONE 40.4s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.4s done
#18 writing image sha256:15fedaac7fe5ba5f5ed8627783a06290719904370aa23be05fb9b6c47b5d4dc2 0.1s done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci 0.0s done
#18 DONE 3.5s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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