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#15 423.5 Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar (291 kB at 850 kB/s)
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#15 423.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.26/plexus-interpolation-1.26.jar (85 kB at 239 kB/s)
#15 423.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.7/nexus-staging-maven-plugin-1.6.7.pom
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#15 423.8 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-staging/1.6.7/nexus-staging-1.6.7.pom
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#15 423.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-maven-plugins/1.6.7/nexus-maven-plugins-1.6.7.pom
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#15 423.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-common/1.6.7/nexus-common-1.6.7.pom
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#15 424.0 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.9.1-02/nexus-client-core-2.9.1-02.pom
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#15 424.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-components/2.9.1-02/nexus-components-2.9.1-02.pom
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#15 424.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-oss/2.9.1-02/nexus-oss-2.9.1-02.pom
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#15 424.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-all/2.9.1-02/nexus-buildsupport-all-2.9.1-02.pom
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#15 424.4 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-commons/2.9.1-02/nexus-buildsupport-commons-2.9.1-02.pom
#15 424.5 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-commons/2.9.1-02/nexus-buildsupport-commons-2.9.1-02.pom
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#15 424.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-db/2.9.1-02/nexus-buildsupport-db-2.9.1-02.pom
#15 424.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-db/2.9.1-02/nexus-buildsupport-db-2.9.1-02.pom
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#15 424.9 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-maven/2.9.1-02/nexus-buildsupport-maven-2.9.1-02.pom
#15 425.0 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-maven/2.9.1-02/nexus-buildsupport-maven-2.9.1-02.pom
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#15 425.1 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-shiro/2.9.1-02/nexus-buildsupport-shiro-2.9.1-02.pom
#15 425.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-shiro/2.9.1-02/nexus-buildsupport-shiro-2.9.1-02.pom
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#15 425.3 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-bouncycastle/2.9.1-02/nexus-buildsupport-bouncycastle-2.9.1-02.pom
#15 425.4 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-bouncycastle/2.9.1-02/nexus-buildsupport-bouncycastle-2.9.1-02.pom
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#15 425.4 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-jetty/2.9.1-02/nexus-buildsupport-jetty-2.9.1-02.pom
#15 425.5 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-jetty/2.9.1-02/nexus-buildsupport-jetty-2.9.1-02.pom
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#15 425.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-goodies/2.9.1-02/nexus-buildsupport-goodies-2.9.1-02.pom
#15 425.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-goodies/2.9.1-02/nexus-buildsupport-goodies-2.9.1-02.pom
#15 425.7 Progress (1): 3.6 kB
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#15 425.8 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-groovy/2.9.1-02/nexus-buildsupport-groovy-2.9.1-02.pom
#15 425.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-groovy/2.9.1-02/nexus-buildsupport-groovy-2.9.1-02.pom
#15 425.9 Progress (1): 2.6 kB
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#15 425.9 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-guice/2.9.1-02/nexus-buildsupport-guice-2.9.1-02.pom
#15 426.0 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-guice/2.9.1-02/nexus-buildsupport-guice-2.9.1-02.pom
#15 426.1 Progress (1): 3.6 kB
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#15 426.1 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-logging/2.9.1-02/nexus-buildsupport-logging-2.9.1-02.pom
#15 426.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-logging/2.9.1-02/nexus-buildsupport-logging-2.9.1-02.pom
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#15 426.3 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-osgi/2.9.1-02/nexus-buildsupport-osgi-2.9.1-02.pom
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#15 426.5 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-other/2.9.1-02/nexus-buildsupport-other-2.9.1-02.pom
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#15 426.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-plexus/2.9.1-02/nexus-buildsupport-plexus-2.9.1-02.pom
#15 426.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-plexus/2.9.1-02/nexus-buildsupport-plexus-2.9.1-02.pom
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#15 426.8 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-rest/2.9.1-02/nexus-buildsupport-rest-2.9.1-02.pom
#15 426.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-rest/2.9.1-02/nexus-buildsupport-rest-2.9.1-02.pom
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#15 427.0 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-testing/2.9.1-02/nexus-buildsupport-testing-2.9.1-02.pom
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#15 427.1 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-metrics/2.9.1-02/nexus-buildsupport-metrics-2.9.1-02.pom
#15 427.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-metrics/2.9.1-02/nexus-buildsupport-metrics-2.9.1-02.pom
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#15 427.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-restlet1x-model/2.9.1-02/nexus-restlet1x-model-2.9.1-02.pom
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#15 427.4 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-plugins-restlet1x/2.9.1-02/nexus-plugins-restlet1x-2.9.1-02.pom
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#15 427.6 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.7/nexus-staging-maven-plugin-1.6.7.jar
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#15 443.4 [output clipped, log limit 2MiB reached]
#15 470.0 WARNING: A restricted method in java.lang.System has been called
#15 470.0 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 470.0 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 470.0 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 470.0
#15 516.0 SLF4J: No SLF4J providers were found.
#15 516.0 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 516.0 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 516.2 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 516.2 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 516.2 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 516.2 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 524.1s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.1s
#17 [13/14] RUN ant jars tools
#17 0.407 Buildfile: /bio-formats-build/bioformats/build.xml
#17 0.818 [echo] isSnapshot = true
#17 2.929
#17 2.929 copy-jars:
#17 2.929
#17 2.929 deps-formats-api:
#17 3.011 [echo] isSnapshot = true
#17 3.066
#17 3.066 install-pom:
#17 3.248 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/pom-bio-formats-9.0.0-SNAPSHOT.pom
#17 3.259 [resolver:install] Installing ome:pom-bio-formats:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 3.263 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 3.265
#17 3.265 jar-formats-api:
#17 3.374 [echo] isSnapshot = true
#17 3.534
#17 3.534 init-title:
#17 3.534 [echo] ----------=========== formats-api ===========----------
#17 3.534
#17 3.534 init-timestamp:
#17 3.543
#17 3.543 init:
#17 3.543
#17 3.543 copy-resources:
#17 3.544 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.558 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.560
#17 3.560 compile:
#17 3.729 [resolver:resolve] Resolving artifacts
#17 3.753 [javac] Compiling 59 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.980 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 3.980 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 3.980 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 4.981 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 4.981 [javac] int currentIndex = r.getCoreIndex();
#17 4.981 [javac] ^
#17 4.981 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.981 [javac] r.setCoreIndex(coreIndex);
#17 4.981 [javac] ^
#17 4.981 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.981 [javac] r.setCoreIndex(currentIndex);
#17 4.981 [javac] ^
#17 5.082 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.082 [javac] public void setCoreIndex(int no) {
#17 5.082 [javac] ^
#17 5.082 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.082 [javac] public int getCoreIndex() {
#17 5.082 [javac] ^
#17 5.082 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.082 [javac] public int coreIndexToSeries(int index)
#17 5.082 [javac] ^
#17 5.082 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.082 [javac] public int seriesToCoreIndex(int series)
#17 5.082 [javac] ^
#17 5.082 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.082 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.082 [javac] ^
#17 5.183 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.183 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 5.183 [javac] ^
#17 5.183 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.184 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 5.184 [javac] ^
#17 5.184 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.184 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 5.184 [javac] ^
#17 5.184 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.184 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 5.184 [javac] ^
#17 5.284 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 5.284 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 5.284 [javac] ^
#17 5.284 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 5.284 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 5.285 [javac] ^
#17 5.285 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 5.285 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 5.285 [javac] ^
#17 5.385 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:791: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.385 [javac] public void setCoreIndex(int no) {
#17 5.385 [javac] ^
#17 5.385 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.385 [javac] public int getCoreIndex() {
#17 5.385 [javac] ^
#17 5.385 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:801: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.385 [javac] public int coreIndexToSeries(int index) {
#17 5.385 [javac] ^
#17 5.385 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:796: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.386 [javac] public int seriesToCoreIndex(int series) {
#17 5.386 [javac] ^
#17 5.386 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:605: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.386 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.386 [javac] ^
#17 5.386 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:606: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.386 [javac] return getReader().getCoreMetadataList();
#17 5.386 [javac] ^
#17 5.386 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:786: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.386 [javac] return getReader().getCoreIndex();
#17 5.386 [javac] ^
#17 5.386 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:792: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.386 [javac] getReader().setCoreIndex(no);
#17 5.386 [javac] ^
#17 5.386 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:797: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.386 [javac] return getReader().seriesToCoreIndex(series);
#17 5.386 [javac] ^
#17 5.386 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:802: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.386 [javac] return getReader().coreIndexToSeries(index);
#17 5.387 [javac] ^
#17 5.487 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.487 [javac] public void setCoreIndex(int no) {
#17 5.487 [javac] ^
#17 5.487 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.487 [javac] public int getCoreIndex() {
#17 5.487 [javac] ^
#17 5.487 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.487 [javac] public int coreIndexToSeries(int index) {
#17 5.487 [javac] ^
#17 5.487 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.487 [javac] public int seriesToCoreIndex(int series) {
#17 5.487 [javac] ^
#17 5.487 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.487 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.487 [javac] ^
#17 5.487 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.488 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 5.488 [javac] ^
#17 5.488 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.488 [javac] return reader.getCoreIndex();
#17 5.488 [javac] ^
#17 5.488 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.488 [javac] reader.setCoreIndex(no);
#17 5.488 [javac] ^
#17 5.488 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.488 [javac] return reader.seriesToCoreIndex(series);
#17 5.488 [javac] ^
#17 5.488 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.488 [javac] return reader.coreIndexToSeries(index);
#17 5.488 [javac] ^
#17 5.650 [javac] Note: Some input files use unchecked or unsafe operations.
#17 5.650 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 5.651 [javac] 36 warnings
#17 5.651
#17 5.651 formats-api.jar:
#17 5.651 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 5.677 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 5.713 [resolver:install] Using default POM (ome:formats-api:9.0.0-SNAPSHOT)
#17 5.717 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.pom
#17 5.718 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar
#17 5.720 [resolver:install] Installing ome:formats-api:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 5.723 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 5.724
#17 5.724 deps-turbojpeg:
#17 5.724
#17 5.724 jar-turbojpeg:
#17 5.823 [echo] isSnapshot = true
#17 5.968
#17 5.968 init-title:
#17 5.968 [echo] ----------=========== turbojpeg ===========----------
#17 5.968
#17 5.968 init-timestamp:
#17 5.969
#17 5.969 init:
#17 5.969
#17 5.969 copy-resources:
#17 5.969 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 5.970
#17 5.970 compile:
#17 5.980 [resolver:resolve] Resolving artifacts
#17 5.983 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 6.186 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 6.186 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 6.186 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 6.949 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.949 [javac] protected void finalize() throws Throwable {
#17 6.949 [javac] ^
#17 6.949 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.949 [javac] super.finalize();
#17 6.949 [javac] ^
#17 6.949 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.950 [javac] protected void finalize() throws Throwable {
#17 6.950 [javac] ^
#17 6.950 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.950 [javac] super.finalize();
#17 6.950 [javac] ^
#17 6.950 [javac] 5 warnings
#17 6.950
#17 6.950 jar:
#17 6.954 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 7.143 [resolver:install] Using default POM (ome:turbojpeg:9.0.0-SNAPSHOT)
#17 7.150 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.pom
#17 7.151 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar
#17 7.153 [resolver:install] Installing ome:turbojpeg:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 7.157 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 7.158
#17 7.158 deps-formats-bsd:
#17 7.158
#17 7.158 jar-formats-bsd:
#17 7.282 [echo] isSnapshot = true
#17 7.429
#17 7.429 init-title:
#17 7.429 [echo] ----------=========== formats-bsd ===========----------
#17 7.429
#17 7.429 init-timestamp:
#17 7.429
#17 7.429 init:
#17 7.429
#17 7.429 copy-resources:
#17 7.430 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.433 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.433
#17 7.433 compile:
#17 7.666 [resolver:resolve] Resolving artifacts
#17 7.690 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.898 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 7.898 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 7.898 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 9.600 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.600 [javac] core.size() != reader.getCoreMetadataList().size())
#17 9.600 [javac] ^
#17 9.600 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.600 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 9.600 [javac] ^
#17 9.600 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.600 [javac] int n = reader.getCoreMetadataList().size();
#17 9.600 [javac] ^
#17 9.600 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 9.600 [javac] reader.setCoreIndex(coreIndex);
#17 9.600 [javac] ^
#17 9.600 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.600 [javac] int n = reader.getCoreMetadataList().size();
#17 9.600 [javac] ^
#17 9.600 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.600 [javac] int n = reader.getCoreMetadataList().size();
#17 9.600 [javac] ^
#17 9.600 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 9.600 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 9.601 [javac] ^
#17 9.601 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.601 [javac] int n = reader.getCoreMetadataList().size();
#17 9.601 [javac] ^
#17 9.601 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 9.601 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 9.601 [javac] ^
#17 9.601 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.601 [javac] int n = reader.getCoreMetadataList().size();
#17 9.601 [javac] ^
#17 9.601 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 9.601 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 9.601 [javac] ^
#17 9.601 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 9.601 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 9.601 [javac] ^
#17 9.601 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 9.601 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 9.601 [javac] ^
#17 9.601 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.601 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 9.601 [javac] ^
#17 9.601 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.601 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 9.601 [javac] ^
#17 9.601 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.601 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 9.602 [javac] ^
#17 9.602 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.602 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 9.602 [javac] ^
#17 9.602 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.602 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 9.602 [javac] ^
#17 9.602 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.602 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 9.602 [javac] ^
#17 9.802 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.802 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 9.802 [javac] ^
#17 9.802 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:70: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.802 [javac] public static final String STABLE_VERSION = "6.6.0";
#17 9.802 [javac] ^
#17 9.802 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:101: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.802 [javac] public static final String OLD_TOOLS = "loci_tools.jar";
#17 9.802 [javac] ^
#17 9.802 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 9.802 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 9.802 [javac] ^
#17 9.802 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 9.802 [javac] URL url = new URL(urlPath);
#17 9.802 [javac] ^
#17 9.803 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitBuffer.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.803 [javac] public class BitBuffer {
#17 9.803 [javac] ^
#17 9.803 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitWriter.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.803 [javac] public class BitWriter {
#17 9.803 [javac] ^
#17 9.903 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 9.903 [javac] BitWriter out = new BitWriter();
#17 9.903 [javac] ^
#17 9.903 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 9.903 [javac] BitWriter out = new BitWriter();
#17 9.903 [javac] ^
#17 10.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:534: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 10.00 [javac] return new Double(v);
#17 10.00 [javac] ^
#17 10.60 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2212: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 10.60 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 10.60 [javac] ^
#17 10.60 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2219: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 10.60 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 10.60 [javac] ^
#17 10.60 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2226: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 10.60 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 10.60 [javac] ^
#17 10.70 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 10.70 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 10.70 [javac] ^
#17 10.91 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.91 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 10.91 [javac] ^
#17 10.91 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1376: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 10.91 [javac] public MetadataStore getMetadataStoreForDisplay() {
#17 10.91 [javac] ^
#17 10.91 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1394: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 10.91 [javac] public MetadataStore getMetadataStoreForConversion() {
#17 10.91 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 11.01 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 11.01 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 11.01 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 11.01 [javac] ^
#17 11.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.11 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 11.11 [javac] ^
#17 11.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 11.11 [javac] protected ReflectedUniverse r;
#17 11.11 [javac] ^
#17 11.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 11.11 [javac] r = new ReflectedUniverse();
#17 11.11 [javac] ^
#17 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1044: warning: [deprecation] NM in UNITS has been deprecated
#17 11.21 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 11.21 [javac] ^
#17 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1076: warning: [deprecation] MM in UNITS has been deprecated
#17 11.21 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 11.21 [javac] ^
#17 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 11.21 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 11.21 [javac] ^
#17 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1091: warning: [deprecation] MM in UNITS has been deprecated
#17 11.21 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 11.21 [javac] ^
#17 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#17 11.21 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 11.21 [javac] ^
#17 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1116: warning: [deprecation] MM in UNITS has been deprecated
#17 11.21 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 11.21 [javac] ^
#17 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1122: warning: [deprecation] MM in UNITS has been deprecated
#17 11.21 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 11.21 [javac] ^
#17 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#17 11.21 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 11.21 [javac] ^
#17 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1175: warning: [deprecation] MM in UNITS has been deprecated
#17 11.21 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 11.21 [javac] ^
#17 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 11.21 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 11.21 [javac] ^
#17 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 11.21 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 11.21 [javac] ^
#17 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 11.21 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 11.21 [javac] ^
#17 11.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 11.21 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 11.21 [javac] ^
#17 11.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:113: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 11.31 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 11.31 [javac] ^
#17 11.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:324: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 11.31 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 11.31 [javac] ^
#17 11.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:346: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 11.31 [javac] result[i] = new Double(readNumber().doubleValue());
#17 11.31 [javac] ^
#17 11.36 [javac] Note: Some input files use unchecked or unsafe operations.
#17 11.36 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 11.36 [javac] 58 warnings
#17 11.36
#17 11.36 formats-bsd.jar:
#17 11.37 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 11.49 [resolver:install] Using default POM (ome:formats-bsd:9.0.0-SNAPSHOT)
#17 11.49 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.pom
#17 11.49 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar
#17 11.49 [resolver:install] Installing ome:formats-bsd:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 11.49 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 11.50
#17 11.50 deps-formats-gpl:
#17 11.50
#17 11.50 jar-formats-gpl:
#17 11.60 [echo] isSnapshot = true
#17 11.74
#17 11.74 init-title:
#17 11.74 [echo] ----------=========== formats-gpl ===========----------
#17 11.74
#17 11.74 init-timestamp:
#17 11.74
#17 11.74 init:
#17 11.74
#17 11.74 copy-resources:
#17 11.74 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 11.74 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 11.74
#17 11.74 compile:
#17 12.02 [resolver:resolve] Resolving artifacts
#17 12.04 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 12.25 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 12.25 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 12.25 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 15.65 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1325: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 15.65 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 15.65 [javac] ^
#17 15.65 [javac] cast to Object for a varargs call
#17 15.65 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 15.75 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.75 [javac] BitWriter bits = null;
#17 15.75 [javac] ^
#17 15.75 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.75 [javac] bits = new BitWriter(planes[index].length / 8);
#17 15.75 [javac] ^
#17 16.15 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 16.15 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 16.15 [javac] ^
#17 16.55 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 16.55 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 16.55 [javac] ^
#17 16.55 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 16.55 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 16.55 [javac] ^
#17 16.55 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.55 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.55 [javac] ^
#17 16.55 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.55 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.55 [javac] ^
#17 16.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 16.85 [javac] Variable variable = group.findVariable(variableName);
#17 16.85 [javac] ^
#17 16.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 16.85 [javac] Variable variable = group.findVariable(variableName);
#17 16.85 [javac] ^
#17 16.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 16.85 [javac] List<Attribute> attributes = variable.getAttributes();
#17 16.85 [javac] ^
#17 16.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 16.85 [javac] String groupName = group.getName();
#17 16.85 [javac] ^
#17 16.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 16.85 [javac] List<Attribute> attributes = group.getAttributes();
#17 16.85 [javac] ^
#17 16.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 16.85 [javac] String variableName = variable.getName();
#17 16.85 [javac] ^
#17 16.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 16.85 [javac] Group nextParent = parent.findGroup(token);
#17 16.85 [javac] ^
#17 16.85 [javac] Note: Some input files use unchecked or unsafe operations.
#17 16.85 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 16.85 [javac] 16 warnings
#17 16.87
#17 16.87 formats-gpl.jar:
#17 16.88 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 17.03 [resolver:install] Using default POM (ome:formats-gpl:9.0.0-SNAPSHOT)
#17 17.03 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.pom
#17 17.03 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar
#17 17.03 [resolver:install] Installing ome:formats-gpl:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 17.04 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 17.04
#17 17.04 deps-bio-formats-plugins:
#17 17.04
#17 17.04 jar-bio-formats-plugins:
#17 17.14 [echo] isSnapshot = true
#17 17.28
#17 17.28 init-title:
#17 17.28 [echo] ----------=========== bio-formats_plugins ===========----------
#17 17.28
#17 17.28 init-timestamp:
#17 17.28
#17 17.28 init:
#17 17.28
#17 17.28 copy-resources:
#17 17.28 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.29 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.29
#17 17.29 compile:
#17 17.55 [resolver:resolve] Resolving artifacts
#17 17.56 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.77 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 17.77 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 17.77 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 19.17 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 19.17 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 19.17 [javac] ^
#17 19.27 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 19.27 [javac] URL url = new URL(urlPath);
#17 19.27 [javac] ^
#17 19.37 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.37 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.37 [javac] ^
#17 19.37 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.37 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.37 [javac] ^
#17 19.47 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.47 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.47 [javac] ^
#17 19.47 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.47 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.47 [javac] ^
#17 19.67 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 19.67 [javac] url = new URL(path);
#17 19.67 [javac] ^
#17 19.87 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 19.87 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 19.87 [javac] 8 warnings
#17 19.90
#17 19.90 bio-formats-plugins.jar:
#17 19.91 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 19.94 [resolver:install] Using default POM (ome:bio-formats_plugins:9.0.0-SNAPSHOT)
#17 19.94 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.pom
#17 19.94 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar
#17 19.94 [resolver:install] Installing ome:bio-formats_plugins:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 19.94 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 19.95
#17 19.95 deps-bio-formats-tools:
#17 19.95
#17 19.95 jar-bio-formats-tools:
#17 20.04 [echo] isSnapshot = true
#17 20.20
#17 20.20 init-title:
#17 20.20 [echo] ----------=========== bio-formats-tools ===========----------
#17 20.20
#17 20.20 init-timestamp:
#17 20.20
#17 20.20 init:
#17 20.20
#17 20.20 copy-resources:
#17 20.20 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 20.20
#17 20.20 compile:
#17 20.46 [resolver:resolve] Resolving artifacts
#17 20.47 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 20.67 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 20.67 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 20.67 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 22.00 [javac] 1 warning
#17 22.00
#17 22.00 bio-formats-tools.jar:
#17 22.00 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 22.01 [resolver:install] Using default POM (ome:bio-formats-tools:9.0.0-SNAPSHOT)
#17 22.01 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.pom
#17 22.01 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar
#17 22.02 [resolver:install] Installing ome:bio-formats-tools:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 22.02 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 22.02
#17 22.02 deps-tests:
#17 22.02
#17 22.02 jar-tests:
#17 22.11 [echo] isSnapshot = true
#17 22.25
#17 22.25 init-title:
#17 22.25 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 22.25
#17 22.25 init-timestamp:
#17 22.25
#17 22.25 init:
#17 22.25
#17 22.25 copy-resources:
#17 22.25 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 22.25
#17 22.25 compile:
#17 22.66 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.00 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.39 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.42 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.69 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.16 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 24.17 [resolver:resolve] Resolving artifacts
#17 24.18 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.26 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.60 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.62 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.89 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.27 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 25.28 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 25.59 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 25.59 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 25.59 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 26.59 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.59 [javac] int index = unflattenedReader.getCoreIndex();
#17 26.59 [javac] ^
#17 26.59 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 26.59 [javac] reader.setCoreIndex(index);
#17 26.59 [javac] ^
#17 26.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.89 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 26.89 [javac] ^
#17 26.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.89 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 26.89 [javac] ^
#17 27.18 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.18 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 27.18 [javac] ^
#17 27.18 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.18 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 27.18 [javac] ^
#17 27.18 [javac] Note: Some input files use unchecked or unsafe operations.
#17 27.18 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 27.18 [javac] 7 warnings
#17 27.18
#17 27.18 tests.jar:
#17 27.18 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 27.20 [resolver:install] Using default POM (ome:test-suite:9.0.0-SNAPSHOT)
#17 27.20 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.pom
#17 27.20 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.jar
#17 27.20 [resolver:install] Installing ome:test-suite:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 27.20 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 27.20
#17 27.20 jars:
#17 27.20
#17 27.20 copy-jars:
#17 27.20
#17 27.20 deps-formats-api:
#17 27.26 [echo] isSnapshot = true
#17 27.30
#17 27.30 install-pom:
#17 27.44 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/pom-bio-formats-9.0.0-SNAPSHOT.pom
#17 27.44 [resolver:install] Installing ome:pom-bio-formats:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 27.44 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 27.44
#17 27.44 jar-formats-api:
#17 27.53 [echo] isSnapshot = true
#17 27.67
#17 27.67 init-title:
#17 27.67 [echo] ----------=========== formats-api ===========----------
#17 27.67
#17 27.67 init-timestamp:
#17 27.67
#17 27.67 init:
#17 27.67
#17 27.67 copy-resources:
#17 27.67
#17 27.67 compile:
#17 27.80 [resolver:resolve] Resolving artifacts
#17 27.81
#17 27.81 formats-api.jar:
#17 27.83 [resolver:install] Using default POM (ome:formats-api:9.0.0-SNAPSHOT)
#17 27.83 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.pom
#17 27.83 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar
#17 27.83 [resolver:install] Installing ome:formats-api:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 27.84 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 27.84
#17 27.84 deps-turbojpeg:
#17 27.84
#17 27.84 jar-turbojpeg:
#17 27.92 [echo] isSnapshot = true
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#17 28.10 [echo] ----------=========== turbojpeg ===========----------
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#17 28.11 [resolver:resolve] Resolving artifacts
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#17 28.12 [resolver:install] Using default POM (ome:turbojpeg:9.0.0-SNAPSHOT)
#17 28.13 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.pom
#17 28.13 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar
#17 28.13 [resolver:install] Installing ome:turbojpeg:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 28.13 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 28.13
#17 28.13 deps-formats-bsd:
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#17 28.22 [echo] isSnapshot = true
#17 28.34
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#17 28.34 [echo] ----------=========== formats-bsd ===========----------
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#17 28.55 formats-bsd.jar:
#17 28.58 [resolver:install] Using default POM (ome:formats-bsd:9.0.0-SNAPSHOT)
#17 28.58 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.pom
#17 28.59 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar
#17 28.59 [resolver:install] Installing ome:formats-bsd:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 28.59 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
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#17 28.59 deps-formats-gpl:
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#17 28.80 [echo] ----------=========== formats-gpl ===========----------
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#17 29.09 [resolver:install] Using default POM (ome:formats-gpl:9.0.0-SNAPSHOT)
#17 29.09 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.pom
#17 29.09 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar
#17 29.09 [resolver:install] Installing ome:formats-gpl:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 29.09 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 29.09
#17 29.09 deps-bio-formats-plugins:
#17 29.09
#17 29.09 jar-bio-formats-plugins:
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#17 29.30 init-title:
#17 29.30 [echo] ----------=========== bio-formats_plugins ===========----------
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#17 29.57 [resolver:install] Using default POM (ome:bio-formats_plugins:9.0.0-SNAPSHOT)
#17 29.58 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.pom
#17 29.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar
#17 29.58 [resolver:install] Installing ome:bio-formats_plugins:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 29.58 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 29.58
#17 29.58 deps-bio-formats-tools:
#17 29.58
#17 29.58 jar-bio-formats-tools:
#17 29.66 [echo] isSnapshot = true
#17 29.78
#17 29.78 init-title:
#17 29.78 [echo] ----------=========== bio-formats-tools ===========----------
#17 29.78
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#17 30.03 bio-formats-tools.jar:
#17 30.04 [resolver:install] Using default POM (ome:bio-formats-tools:9.0.0-SNAPSHOT)
#17 30.04 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.pom
#17 30.04 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar
#17 30.04 [resolver:install] Installing ome:bio-formats-tools:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 30.05 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 30.05
#17 30.05 deps-tests:
#17 30.05
#17 30.05 jar-tests:
#17 30.13 [echo] isSnapshot = true
#17 30.25
#17 30.25 init-title:
#17 30.25 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 30.25
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#17 30.25
#17 30.25 init:
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#17 30.25
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#17 30.50
#17 30.50 tests.jar:
#17 30.50 [resolver:install] Using default POM (ome:test-suite:9.0.0-SNAPSHOT)
#17 30.50 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.pom
#17 30.51 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.jar
#17 30.51 [resolver:install] Installing ome:test-suite:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 30.51 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 30.51
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#17 30.51
#17 30.51 tools:
#17 30.51 [echo] ----------=========== bioformats_package ===========----------
#17 30.59 [echo] isSnapshot = true
#17 30.71
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#17 30.71
#17 30.71 bundle:
#17 30.98 [resolver:resolve] Resolving artifacts
#17 30.98 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.02 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.3.0/ome-common-6.3.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.04 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.07 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.07 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.13 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.15 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.21 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.22 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.45 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.50 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.51 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.57 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.58 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.60 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.60 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.77 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 32.26 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.26 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.27 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 32.36 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.36 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.6.0/ome-xml-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.42 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.6.0/specification-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.48 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.49 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.2.0/ome-codecs-1.2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.50 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5/ome-jai-0.1.5.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 32.67 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.75 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 34.01 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.4.0/ome-mdbtools-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 34.03 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.4.0/ome-poi-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.16 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 34.84 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.14/httpmime-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.84 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-math3/3.6.1/commons-math3-3.6.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.17 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.8/re2j-1.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.18 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.53 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.54 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.55 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.18/slf4j-api-2.0.18.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.56 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.57 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.60 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.99 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.5.37/logback-core-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.11 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.5.37/logback-classic-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.54 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 43.65 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 44.37 [resolver:install] Using default POM (ome:bioformats_package:9.0.0-SNAPSHOT)
#17 44.37 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/bioformats_package-9.0.0-SNAPSHOT.pom
#17 44.37 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/bioformats_package-9.0.0-SNAPSHOT.jar
#17 44.42 [resolver:install] Installing ome:bioformats_package:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 44.42 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 44.43
#17 44.43 BUILD SUCCESSFUL
#17 44.43 Total time: 44 seconds
#17 DONE 45.1s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.1s
#19 exporting to image
#19 exporting layers
#19 exporting layers 3.7s done
#19 writing image sha256:8c7cc308c506253d971528af52fee5679321151805baa986b08278dfdf37a7f1 done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 3.8s
WARNING: current commit information was not captured by the build: failed to read current commit information with git rev-parse --is-inside-work-tree
Finished: SUCCESS
