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#14 306.9 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mformats-gpl[0;1m ---[m
#14 306.9 [[1;34mINFO[m]
#14 306.9 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-gpl[0;1m ---[m
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#14 306.9 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 306.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 306.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 306.9 [[1;34mINFO[m] Storing buildNumber: 8d28588c7c02bc339989c1ddc2d74eb33d9b6344 at timestamp: 1732148152134
#14 306.9 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 306.9 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 306.9
#14 306.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 306.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 306.9 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 306.9 [[1;34mINFO[m]
#14 306.9 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mformats-gpl[0;1m ---[m
#14 306.9 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 306.9 [[1;34mINFO[m] Copying 1 resource
#14 306.9 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/formats-gpl/lib
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#14 307.0 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 307.0 [[1;34mINFO[m] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/target/classes
#14 309.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 309.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 309.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 309.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
#14 309.1 [[1;34mINFO[m]
#14 309.1 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mformats-gpl[0;1m ---[m
#14 309.1 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
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#14 309.1 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mformats-gpl[0;1m ---[m
#14 309.1 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 309.1 [[1;34mINFO[m] Compiling 23 source files to /bio-formats-build/bioformats/components/formats-gpl/target/test-classes
#14 309.3 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 309.3 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 309.3 [[1;34mINFO[m]
#14 309.3 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mformats-gpl[0;1m ---[m
#14 309.3 [[1;34mINFO[m]
#14 309.3 [[1;34mINFO[m] -------------------------------------------------------
#14 309.3 [[1;34mINFO[m] T E S T S
#14 309.3 [[1;34mINFO[m] -------------------------------------------------------
#14 309.4 [[1;34mINFO[m] Running [1mTestSuite[m
#14 310.7 2024-11-21 00:15:55,876 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@3add81c4 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 310.7 2024-11-21 00:15:55,879 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@1f2d2181 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 310.7 2024-11-21 00:15:55,932 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@7ba63fe5 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 310.7 2024-11-21 00:15:55,932 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@73386d72 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 310.8 2024-11-21 00:15:55,981 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@44f9779c reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 310.8 2024-11-21 00:15:55,982 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5f233b26 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 310.8 2024-11-21 00:15:56,029 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5339bbad reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 310.8 2024-11-21 00:15:56,029 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3935e9a8 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 310.8 2024-11-21 00:15:56,073 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@2f4919b0 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 310.8 2024-11-21 00:15:56,073 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@a8a8b75 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 310.9 2024-11-21 00:15:56,136 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@2e1792e7 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 310.9 2024-11-21 00:15:56,136 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@3aefae67 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 311.0 2024-11-21 00:15:56,184 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@72ba28ee reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 311.0 2024-11-21 00:15:56,184 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@2e3a5237 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 311.0 2024-11-21 00:15:56,228 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@72ed9aad reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 311.0 2024-11-21 00:15:56,228 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@1d207fad reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 311.3 [[1;34mINFO[m] [1;32mTests run: [0;1;32m99[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.827 s - in [1mTestSuite[m
#14 311.6 [[1;34mINFO[m]
#14 311.6 [[1;34mINFO[m] Results:
#14 311.6 [[1;34mINFO[m]
#14 311.6 [[1;34mINFO[m] [1;32mTests run: 99, Failures: 0, Errors: 0, Skipped: 0[m
#14 311.6 [[1;34mINFO[m]
#14 311.6 [[1;34mINFO[m]
#14 311.6 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-mdb-test)[m @ [36mformats-gpl[0;1m ---[m
#14 311.6 [[1;34mINFO[m]
#14 311.6 [[1;34mINFO[m] -------------------------------------------------------
#14 311.6 [[1;34mINFO[m] T E S T S
#14 311.6 [[1;34mINFO[m] -------------------------------------------------------
#14 311.8 [[1;34mINFO[m] Running [1mTestSuite[m
#14 312.2 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.427 s - in [1mTestSuite[m
#14 312.5 [[1;34mINFO[m]
#14 312.5 [[1;34mINFO[m] Results:
#14 312.5 [[1;34mINFO[m]
#14 312.5 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 312.5 [[1;34mINFO[m]
#14 312.5 [[1;34mINFO[m]
#14 312.5 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-poi-test)[m @ [36mformats-gpl[0;1m ---[m
#14 312.5 [[1;34mINFO[m]
#14 312.5 [[1;34mINFO[m] -------------------------------------------------------
#14 312.5 [[1;34mINFO[m] T E S T S
#14 312.5 [[1;34mINFO[m] -------------------------------------------------------
#14 312.7 [[1;34mINFO[m] Running [1mTestSuite[m
#14 313.1 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.425 s - in [1mTestSuite[m
#14 313.4 [[1;34mINFO[m]
#14 313.4 [[1;34mINFO[m] Results:
#14 313.4 [[1;34mINFO[m]
#14 313.4 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 313.4 [[1;34mINFO[m]
#14 313.4 [[1;34mINFO[m]
#14 313.4 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-netcdf-test)[m @ [36mformats-gpl[0;1m ---[m
#14 313.4 [[1;34mINFO[m]
#14 313.4 [[1;34mINFO[m] -------------------------------------------------------
#14 313.4 [[1;34mINFO[m] T E S T S
#14 313.4 [[1;34mINFO[m] -------------------------------------------------------
#14 313.6 [[1;34mINFO[m] Running [1mTestSuite[m
#14 314.0 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.411 s - in [1mTestSuite[m
#14 314.3 [[1;34mINFO[m]
#14 314.3 [[1;34mINFO[m] Results:
#14 314.3 [[1;34mINFO[m]
#14 314.3 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 314.3 [[1;34mINFO[m]
#14 314.3 [[1;34mINFO[m]
#14 314.3 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mformats-gpl[0;1m ---[m
#14 314.4 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar
#14 314.4 [[1;34mINFO[m]
#14 314.4 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m >>>[m
#14 314.4 [[1;34mINFO[m]
#14 314.4 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-gpl[0;1m ---[m
#14 314.4 [[1;34mINFO[m]
#14 314.4 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 314.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 314.4 [[1;34mINFO[m] Storing buildNumber: 8d28588c7c02bc339989c1ddc2d74eb33d9b6344 at timestamp: 1732148159626
#14 314.4 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 314.4 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 314.4
#14 314.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 314.4 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 314.4 [[1;34mINFO[m]
#14 314.4 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m <<<[m
#14 314.4 [[1;34mINFO[m]
#14 314.4 [[1;34mINFO[m]
#14 314.4 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 314.4 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 314.5 [[1;34mINFO[m]
#14 314.5 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 314.5 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 314.5 [[1;34mINFO[m]
#14 314.5 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mformats-gpl[0;1m ---[m
#14 314.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#14 314.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#14 314.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 314.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 314.5 [[1;34mINFO[m]
#14 314.5 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats_plugins[0;1m >-----------------------[m
#14 314.5 [[1;34mINFO[m] [1mBuilding Bio-Formats Plugins for ImageJ 8.1.0-SNAPSHOT [17/24][m
#14 314.5 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 314.5 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
#14 314.5 Progress (1): 4.1/7.9 kB
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#14 314.5 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar (2.5 MB at 20 MB/s)
#14 314.7 [[1;34mINFO[m]
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#14 314.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 314.7 [[1;34mINFO[m] Storing buildNumber: 8d28588c7c02bc339989c1ddc2d74eb33d9b6344 at timestamp: 1732148159896
#14 314.7 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 314.7 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 314.7
#14 314.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 314.7 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
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#14 314.7 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
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#14 314.7 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
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#14 314.7 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 314.7 [[1;34mINFO[m] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/classes
#14 315.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 315.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 315.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 315.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
#14 315.2 [[1;34mINFO[m]
#14 315.2 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 315.2 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 315.2 [[1;34mINFO[m] Copying 1 resource
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#14 315.2 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 315.2 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 315.2 [[1;34mINFO[m] Compiling 3 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/test-classes
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#14 315.4 [[1;34mINFO[m]
#14 315.4 [[1;34mINFO[m] -------------------------------------------------------
#14 315.4 [[1;34mINFO[m] T E S T S
#14 315.4 [[1;34mINFO[m] -------------------------------------------------------
#14 315.6 [[1;34mINFO[m] Running [1mTestSuite[m
#14 316.9 Warning: Data has too many channels for Colorized color mode
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#14 317.1 Warning: Data has too many channels for Colorized color mode
#14 317.1 Warning: Data has too many channels for Colorized color mode
#14 317.1 Warning: Data has too many channels for Colorized color mode
#14 317.2 Warning: Data has too many channels for Colorized color mode
#14 317.2 Warning: Data has too many channels for Composite color mode
#14 317.2 Warning: Data has too many channels for Composite color mode
#14 317.6 Warning: Data has too many channels for Composite color mode
#14 317.6 Warning: Data has too many channels for Composite color mode
#14 317.6 Warning: Data has too many channels for Composite color mode
#14 317.6 Warning: Data has too many channels for Composite color mode
#14 317.6 Warning: Data has too many channels for Composite color mode
#14 317.6 Warning: Data has too many channels for Composite color mode
#14 317.7 Warning: Data has too many channels for Composite color mode
#14 317.7 Warning: Data has too many channels for Composite color mode
#14 317.7 Warning: Data has too many channels for Composite color mode
#14 317.7 Warning: Data has too many channels for Composite color mode
#14 317.7 Warning: Data has too many channels for Composite color mode
#14 317.7 Warning: Data has too many channels for Composite color mode
#14 317.7 Warning: Data has too many channels for Composite color mode
#14 317.7 Warning: Data has too many channels for Composite color mode
#14 317.7 Warning: Data has too many channels for Composite color mode
#14 317.7 Warning: Data has too many channels for Composite color mode
#14 318.0 Warning: Data has too many channels for Composite color mode
#14 318.0 Warning: Data has too many channels for Composite color mode
#14 318.1 Warning: Data has too many channels for Composite color mode
#14 318.1 Warning: Data has too many channels for Composite color mode
#14 318.1 Warning: Data has too many channels for Composite color mode
#14 318.1 Warning: Data has too many channels for Composite color mode
#14 318.1 Warning: Data has too many channels for Composite color mode
#14 318.1 Warning: Data has too many channels for Composite color mode
#14 318.1 Warning: Data has too many channels for Composite color mode
#14 318.1 Warning: Data has too many channels for Composite color mode
#14 318.1 Warning: Data has too many channels for Composite color mode
#14 318.1 Warning: Data has too many channels for Composite color mode
#14 318.1 Warning: Data has too many channels for Composite color mode
#14 318.1 Warning: Data has too many channels for Composite color mode
#14 318.2 Warning: Data has too many channels for Composite color mode
#14 318.2 Warning: Data has too many channels for Composite color mode
#14 318.2 Warning: Data has too many channels for Composite color mode
#14 318.2 Warning: Data has too many channels for Composite color mode
#14 318.5 Warning: Data has too many channels for Composite color mode
#14 318.5 Warning: Data has too many channels for Composite color mode
#14 318.6 Warning: Data has too many channels for Composite color mode
#14 318.6 Warning: Data has too many channels for Composite color mode
#14 318.6 Warning: Data has too many channels for Composite color mode
#14 318.6 Warning: Data has too many channels for Composite color mode
#14 318.6 Warning: Data has too many channels for Composite color mode
#14 318.6 Warning: Data has too many channels for Composite color mode
#14 318.6 Warning: Data has too many channels for Composite color mode
#14 318.6 Warning: Data has too many channels for Composite color mode
#14 318.6 Warning: Data has too many channels for Composite color mode
#14 318.7 Warning: Data has too many channels for Composite color mode
#14 318.7 Warning: Data has too many channels for Composite color mode
#14 318.7 Warning: Data has too many channels for Composite color mode
#14 318.7 Warning: Data has too many channels for Composite color mode
#14 318.7 Warning: Data has too many channels for Composite color mode
#14 319.0 Warning: Data has too many channels for Composite color mode
#14 319.0 Warning: Data has too many channels for Composite color mode
#14 319.0 Warning: Data has too many channels for Composite color mode
#14 319.0 Warning: Data has too many channels for Composite color mode
#14 319.1 Warning: Data has too many channels for Composite color mode
#14 319.1 Warning: Data has too many channels for Composite color mode
#14 319.1 Warning: Data has too many channels for Composite color mode
#14 319.1 Warning: Data has too many channels for Composite color mode
#14 319.1 Warning: Data has too many channels for Composite color mode
#14 319.1 Warning: Data has too many channels for Composite color mode
#14 319.1 Warning: Data has too many channels for Composite color mode
#14 319.1 Warning: Data has too many channels for Composite color mode
#14 319.1 Warning: Data has too many channels for Composite color mode
#14 319.1 Warning: Data has too many channels for Composite color mode
#14 319.2 Warning: Data has too many channels for Composite color mode
#14 319.2 Warning: Data has too many channels for Composite color mode
#14 319.2 Warning: Data has too many channels for Custom color mode
#14 319.2 Warning: Data has too many channels for Custom color mode
#14 319.2 Warning: Data has too many channels for Custom color mode
#14 319.3 Warning: Data has too many channels for Custom color mode
#14 319.3 Warning: Data has too many channels for Custom color mode
#14 319.3 Warning: Data has too many channels for Custom color mode
#14 319.3 Warning: Data has too many channels for Custom color mode
#14 319.3 Warning: Data has too many channels for Custom color mode
#14 319.4 Warning: Data has too many channels for Default color mode
#14 319.4 Warning: Data has too many channels for Default color mode
#14 319.4 Warning: Data has too many channels for Default color mode
#14 319.4 Warning: Data has too many channels for Default color mode
#14 319.5 Warning: Data has too many channels for Default color mode
#14 319.5 Warning: Data has too many channels for Default color mode
#14 319.5 Warning: Data has too many channels for Default color mode
#14 319.5 Warning: Data has too many channels for Default color mode
#14 319.5 Warning: Data has too many channels for Default color mode
#14 319.6 Warning: Data has too many channels for Default color mode
#14 319.6 Warning: Data has too many channels for Default color mode
#14 319.6 Warning: Data has too many channels for Default color mode
#14 319.6 Warning: Data has too many channels for Default color mode
#14 319.7 Warning: Data has too many channels for Default color mode
#14 319.7 Warning: Data has too many channels for Default color mode
#14 319.7 Warning: Data has too many channels for Default color mode
#14 319.7 Warning: Data has too many channels for Grayscale color mode
#14 319.8 Warning: Data has too many channels for Grayscale color mode
#14 319.8 Warning: Data has too many channels for Grayscale color mode
#14 319.8 Warning: Data has too many channels for Grayscale color mode
#14 319.8 Warning: Data has too many channels for Grayscale color mode
#14 319.8 Warning: Data has too many channels for Grayscale color mode
#14 319.9 Warning: Data has too many channels for Grayscale color mode
#14 319.9 Warning: Data has too many channels for Grayscale color mode
#14 319.9 Warning: Data has too many channels for Colorized color mode
#14 320.0 Warning: Data has too many channels for Colorized color mode
#14 320.0 Warning: Data has too many channels for Colorized color mode
#14 320.6 Warning: Data has too many channels for Default color mode
#14 320.8 [[1;34mINFO[m] [1;32mTests run: [0;1;32m30[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.21 s - in [1mTestSuite[m
#14 321.1 [[1;34mINFO[m]
#14 321.1 [[1;34mINFO[m] Results:
#14 321.1 [[1;34mINFO[m]
#14 321.1 [[1;34mINFO[m] [1;32mTests run: 30, Failures: 0, Errors: 0, Skipped: 0[m
#14 321.1 [[1;34mINFO[m]
#14 321.1 [[1;34mINFO[m]
#14 321.1 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 321.1 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 321.1 [[1;34mINFO[m]
#14 321.1 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m >>>[m
#14 321.1 [[1;34mINFO[m]
#14 321.1 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 321.1 [[1;34mINFO[m]
#14 321.1 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 321.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 321.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 321.1 [[1;34mINFO[m] Storing buildNumber: 8d28588c7c02bc339989c1ddc2d74eb33d9b6344 at timestamp: 1732148166359
#14 321.1 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 321.1 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 321.1
#14 321.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 321.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 321.1 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 321.1 [[1;34mINFO[m]
#14 321.1 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m <<<[m
#14 321.1 [[1;34mINFO[m]
#14 321.1 [[1;34mINFO[m]
#14 321.1 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 321.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 321.2 [[1;34mINFO[m]
#14 321.2 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 321.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 321.2 [[1;34mINFO[m]
#14 321.2 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 321.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 321.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#14 321.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 321.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 321.2 [[1;34mINFO[m]
#14 321.2 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bio-formats-tools[0;1m >------------------------[m
#14 321.2 [[1;34mINFO[m] [1mBuilding Bio-Formats command line tools 8.1.0-SNAPSHOT [18/24][m
#14 321.2 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 321.2 [[1;34mINFO[m]
#14 321.2 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats-tools[0;1m ---[m
#14 321.2 [[1;34mINFO[m]
#14 321.2 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 321.2 [[1;34mINFO[m]
#14 321.2 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 321.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 321.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 321.2 [[1;34mINFO[m] Storing buildNumber: 8d28588c7c02bc339989c1ddc2d74eb33d9b6344 at timestamp: 1732148166432
#14 321.2 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 321.2 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 321.2
#14 321.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 321.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 321.2 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 321.2 [[1;34mINFO[m]
#14 321.2 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 321.2 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 321.2 [[1;34mINFO[m] Copying 0 resource
#14 321.2 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-tools/lib
#14 321.2 [[1;34mINFO[m] Copying 0 resource
#14 321.2 [[1;34mINFO[m] Copying 0 resource
#14 321.2 [[1;34mINFO[m]
#14 321.2 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 321.2 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 321.2 [[1;34mINFO[m] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/target/classes
#14 321.4 [[1;34mINFO[m]
#14 321.4 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 321.4 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 321.4 [[1;34mINFO[m] Copying 1 resource
#14 321.4 [[1;34mINFO[m]
#14 321.4 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 321.4 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 321.4 [[1;34mINFO[m] Compiling 1 source file to /bio-formats-build/bioformats/components/bio-formats-tools/target/test-classes
#14 321.5 [[1;34mINFO[m]
#14 321.5 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats-tools[0;1m ---[m
#14 321.5 [[1;34mINFO[m]
#14 321.5 [[1;34mINFO[m] -------------------------------------------------------
#14 321.5 [[1;34mINFO[m] T E S T S
#14 321.5 [[1;34mINFO[m] -------------------------------------------------------
#14 321.7 [[1;34mINFO[m] Running loci.formats.tools.[1mImageConverterTest[m
#14 386.6 [[1;34mINFO[m] [1;32mTests run: [0;1;32m55[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 64.887 s - in loci.formats.tools.[1mImageConverterTest[m
#14 386.9 [[1;34mINFO[m]
#14 386.9 [[1;34mINFO[m] Results:
#14 386.9 [[1;34mINFO[m]
#14 386.9 [[1;34mINFO[m] [1;32mTests run: 55, Failures: 0, Errors: 0, Skipped: 0[m
#14 386.9 [[1;34mINFO[m]
#14 386.9 [[1;34mINFO[m]
#14 386.9 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats-tools[0;1m ---[m
#14 386.9 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT.jar
#14 386.9 [[1;34mINFO[m]
#14 386.9 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m >>>[m
#14 386.9 [[1;34mINFO[m]
#14 386.9 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
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#14 387.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#14 387.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#14 387.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar
#14 387.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar
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#14 387.0 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bioformats_package[0;1m >-----------------------[m
#14 387.0 [[1;34mINFO[m] [1mBuilding bioformats_package bundle 8.1.0-SNAPSHOT [19/24][m
#14 387.0 [[1;34mINFO[m] [1m--------------------------------[ pom ]---------------------------------[m
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#14 387.0 [[1;34mINFO[m]
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#14 387.0 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 387.0 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 387.1 [[1;34mINFO[m] Storing buildNumber: 8d28588c7c02bc339989c1ddc2d74eb33d9b6344 at timestamp: 1732148232274
#14 387.1 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 387.1 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 387.1
#14 387.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
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#14 387.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 387.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 387.1 [[1;34mINFO[m] Storing buildNumber: 8d28588c7c02bc339989c1ddc2d74eb33d9b6344 at timestamp: 1732148232291
#14 387.1 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 387.1 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
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#14 387.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
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#14 387.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-artifact-transfer/0.9.0/maven-artifact-transfer-0.9.0.pom
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#14 387.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-artifact-transfer/0.9.0/maven-artifact-transfer-0.9.0.jar
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#14 387.2 [[1;34mINFO[m] Reading assembly descriptor: assembly.xml
#14 387.6 [[1;33mWARNING[m] The following patterns were never triggered in this artifact exclusion filter:
#14 387.6 o 'gov.nih.imagej:imagej'
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#14 387.7 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/6.3.1/biz.aQute.bndlib-6.3.1.pom
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#14 387.7 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.dto/1.0.0/org.osgi.dto-1.0.0.pom
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#14 388.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.bundlerepository/1.6.6/org.apache.felix.bundlerepository-1.6.6.pom
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#14 388.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.utils/1.6.0/org.apache.felix.utils-1.6.0.pom
#14 388.2 Progress (1): 3.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.utils/1.6.0/org.apache.felix.utils-1.6.0.pom (3.3 kB at 131 kB/s)
#14 388.2 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.compendium/4.2.0/org.osgi.compendium-4.2.0.pom
#14 388.2 Progress (1): 463 B
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.compendium/4.2.0/org.osgi.compendium-4.2.0.pom (463 B at 17 kB/s)
#14 388.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/3.3.9/maven-core-3.3.9.pom
#14 388.2 Progress (1): 4.1/8.3 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/3.3.9/maven-core-3.3.9.pom (8.3 kB at 332 kB/s)
#14 388.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/3.3.9/maven-3.3.9.pom
#14 388.3 Progress (1): 4.1/24 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/3.3.9/maven-3.3.9.pom (24 kB at 957 kB/s)
#14 388.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/3.3.9/maven-model-3.3.9.pom
#14 388.3 Progress (1): 4.0 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/3.3.9/maven-model-3.3.9.pom (4.0 kB at 168 kB/s)
#14 388.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.4/commons-lang3-3.4.pom
#14 388.3 Progress (1): 4.1/22 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.4/commons-lang3-3.4.pom (22 kB at 924 kB/s)
#14 388.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-parent/37/commons-parent-37.pom
#14 388.3 Progress (1): 4.1/63 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-parent/37/commons-parent-37.pom (63 kB at 2.5 MB/s)
#14 388.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/3.3.9/maven-settings-3.3.9.pom
#14 388.4 Progress (1): 1.8 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/3.3.9/maven-settings-3.3.9.pom (1.8 kB at 73 kB/s)
#14 388.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings-builder/3.3.9/maven-settings-builder-3.3.9.pom
#14 388.4 Progress (1): 2.6 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings-builder/3.3.9/maven-settings-builder-3.3.9.pom (2.6 kB at 101 kB/s)
#14 388.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-builder-support/3.3.9/maven-builder-support-3.3.9.pom
#14 388.4 Progress (1): 1.7 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-builder-support/3.3.9/maven-builder-support-3.3.9.pom (1.7 kB at 64 kB/s)
#14 388.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.pom
#14 388.5 Progress (1): 1.5 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.pom (1.5 kB at 64 kB/s)
#14 388.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/3.3.9/maven-repository-metadata-3.3.9.pom
#14 388.5 Progress (1): 1.9 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/3.3.9/maven-repository-metadata-3.3.9.pom (1.9 kB at 76 kB/s)
#14 388.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/3.3.9/maven-artifact-3.3.9.pom
#14 388.5 Progress (1): 2.1 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/3.3.9/maven-artifact-3.3.9.pom (2.1 kB at 82 kB/s)
#14 388.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.3.9/maven-plugin-api-3.3.9.pom
#14 388.5 Progress (1): 2.7 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.3.9/maven-plugin-api-3.3.9.pom (2.7 kB at 103 kB/s)
#14 388.6 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.3.2/org.eclipse.sisu.plexus-0.3.2.pom
#14 388.6 Progress (1): 4.1/4.2 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.3.2/org.eclipse.sisu.plexus-0.3.2.pom (4.2 kB at 154 kB/s)
#14 388.6 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/sisu-plexus/0.3.2/sisu-plexus-0.3.2.pom
#14 388.6 Progress (1): 4.1/14 kB
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#14 388.6 Downloading from central: https://repo.maven.apache.org/maven2/javax/enterprise/cdi-api/1.0/cdi-api-1.0.pom
#14 388.6 Progress (1): 1.4 kB
Downloaded from central: https://repo.maven.apache.org/maven2/javax/enterprise/cdi-api/1.0/cdi-api-1.0.pom (1.4 kB at 60 kB/s)
#14 388.6 Downloading from central: https://repo.maven.apache.org/maven2/org/jboss/weld/weld-api-parent/1.0/weld-api-parent-1.0.pom
#14 388.7 Progress (1): 2.4 kB
Downloaded from central: https://repo.maven.apache.org/m
#14 388.7 [output clipped, log limit 2MiB reached]
#14 492.7 SLF4J: No SLF4J providers were found.
#14 492.7 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 492.7 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 493.3 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#14 493.3 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#14 493.3 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#14 493.3 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#14 DONE 503.2s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s
#16 [12/13] RUN ant jars tools
#16 0.969 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.782 [echo] isSnapshot = true
#16 1.914
#16 1.914 copy-jars:
#16 1.914
#16 1.914 deps-formats-api:
#16 2.003 [echo] isSnapshot = true
#16 2.058
#16 2.058 install-pom:
#16 2.248 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 2.260 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 2.265 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.266
#16 2.266 jar-formats-api:
#16 2.382 [echo] isSnapshot = true
#16 2.549
#16 2.549 init-title:
#16 2.549 [echo] ----------=========== formats-api ===========----------
#16 2.549
#16 2.549 init-timestamp:
#16 2.556
#16 2.556 init:
#16 2.556
#16 2.556 copy-resources:
#16 2.557 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.570 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.572
#16 2.572 compile:
#16 2.757 [resolver:resolve] Resolving artifacts
#16 2.784 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.172 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.172 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 3.172 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 3.172 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 3.773 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.773 [javac] import loci.common.ReflectedUniverse;
#16 3.773 [javac] ^
#16 4.074 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.074 [javac] int currentIndex = r.getCoreIndex();
#16 4.074 [javac] ^
#16 4.074 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.074 [javac] r.setCoreIndex(coreIndex);
#16 4.074 [javac] ^
#16 4.074 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.074 [javac] r.setCoreIndex(currentIndex);
#16 4.074 [javac] ^
#16 4.174 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.174 [javac] public void setCoreIndex(int no) {
#16 4.174 [javac] ^
#16 4.174 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.174 [javac] public int getCoreIndex() {
#16 4.174 [javac] ^
#16 4.175 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.175 [javac] public int coreIndexToSeries(int index)
#16 4.175 [javac] ^
#16 4.175 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.175 [javac] public int seriesToCoreIndex(int series)
#16 4.175 [javac] ^
#16 4.175 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.175 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.175 [javac] ^
#16 4.275 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.275 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.275 [javac] ^
#16 4.276 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.276 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.276 [javac] ^
#16 4.276 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.276 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.276 [javac] ^
#16 4.276 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.276 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.276 [javac] ^
#16 4.376 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#16 4.376 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#16 4.376 [javac] ^
#16 4.377 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.377 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.377 [javac] ^
#16 4.377 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.377 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.377 [javac] ^
#16 4.477 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.477 [javac] public void setCoreIndex(int no) {
#16 4.477 [javac] ^
#16 4.477 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.478 [javac] public int getCoreIndex() {
#16 4.478 [javac] ^
#16 4.478 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.478 [javac] public int coreIndexToSeries(int index) {
#16 4.478 [javac] ^
#16 4.478 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.478 [javac] public int seriesToCoreIndex(int series) {
#16 4.478 [javac] ^
#16 4.478 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.478 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.478 [javac] ^
#16 4.478 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.479 [javac] return getReader().getCoreMetadataList();
#16 4.479 [javac] ^
#16 4.479 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.479 [javac] return getReader().getCoreIndex();
#16 4.479 [javac] ^
#16 4.479 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.479 [javac] getReader().setCoreIndex(no);
#16 4.479 [javac] ^
#16 4.479 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.479 [javac] return getReader().seriesToCoreIndex(series);
#16 4.479 [javac] ^
#16 4.479 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.479 [javac] return getReader().coreIndexToSeries(index);
#16 4.479 [javac] ^
#16 4.479 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.479 [javac] public void setCoreIndex(int no) {
#16 4.479 [javac] ^
#16 4.480 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.480 [javac] public int getCoreIndex() {
#16 4.480 [javac] ^
#16 4.480 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.480 [javac] public int coreIndexToSeries(int index) {
#16 4.480 [javac] ^
#16 4.480 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.480 [javac] public int seriesToCoreIndex(int series) {
#16 4.480 [javac] ^
#16 4.480 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.480 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.480 [javac] ^
#16 4.480 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.480 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.480 [javac] ^
#16 4.480 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.480 [javac] return reader.getCoreIndex();
#16 4.480 [javac] ^
#16 4.480 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.480 [javac] reader.setCoreIndex(no);
#16 4.480 [javac] ^
#16 4.481 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.481 [javac] return reader.seriesToCoreIndex(series);
#16 4.481 [javac] ^
#16 4.481 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.481 [javac] return reader.coreIndexToSeries(index);
#16 4.481 [javac] ^
#16 4.681 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.681 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.681 [javac] 40 warnings
#16 4.708
#16 4.708 formats-api.jar:
#16 4.709 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.734 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.769 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 4.772 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 4.775 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 4.776 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 4.778 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.779
#16 4.779 deps-turbojpeg:
#16 4.779
#16 4.779 jar-turbojpeg:
#16 4.881 [echo] isSnapshot = true
#16 5.035
#16 5.035 init-title:
#16 5.035 [echo] ----------=========== turbojpeg ===========----------
#16 5.035
#16 5.035 init-timestamp:
#16 5.035
#16 5.035 init:
#16 5.035
#16 5.035 copy-resources:
#16 5.036 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.037
#16 5.037 compile:
#16 5.047 [resolver:resolve] Resolving artifacts
#16 5.050 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.252 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.252 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 5.252 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 5.252 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 5.945 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.945 [javac] protected void finalize() throws Throwable {
#16 5.945 [javac] ^
#16 5.945 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.945 [javac] super.finalize();
#16 5.945 [javac] ^
#16 5.945 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.945 [javac] protected void finalize() throws Throwable {
#16 5.945 [javac] ^
#16 5.945 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 5.945 [javac] super.finalize();
#16 5.945 [javac] ^
#16 5.945 [javac] 8 warnings
#16 5.945
#16 5.945 jar:
#16 5.949 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.133 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 6.140 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 6.143 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 6.145 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 6.149 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.150
#16 6.150 deps-formats-bsd:
#16 6.150
#16 6.150 jar-formats-bsd:
#16 6.277 [echo] isSnapshot = true
#16 6.420
#16 6.420 init-title:
#16 6.420 [echo] ----------=========== formats-bsd ===========----------
#16 6.420
#16 6.420 init-timestamp:
#16 6.420
#16 6.420 init:
#16 6.420
#16 6.420 copy-resources:
#16 6.421 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.423 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.424
#16 6.424 compile:
#16 6.638 [resolver:resolve] Resolving artifacts
#16 6.666 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.874 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 6.874 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 6.874 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 6.874 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 7.975 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.975 [javac] import loci.common.ReflectedUniverse;
#16 7.975 [javac] ^
#16 8.376 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.376 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.376 [javac] ^
#16 8.376 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.376 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.376 [javac] ^
#16 8.476 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.476 [javac] int n = reader.getCoreMetadataList().size();
#16 8.476 [javac] ^
#16 8.476 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.476 [javac] reader.setCoreIndex(coreIndex);
#16 8.476 [javac] ^
#16 8.476 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.476 [javac] int n = reader.getCoreMetadataList().size();
#16 8.476 [javac] ^
#16 8.476 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.476 [javac] int n = reader.getCoreMetadataList().size();
#16 8.476 [javac] ^
#16 8.476 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.476 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.476 [javac] ^
#16 8.476 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.476 [javac] int n = reader.getCoreMetadataList().size();
#16 8.477 [javac] ^
#16 8.477 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.477 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.477 [javac] ^
#16 8.477 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.477 [javac] int n = reader.getCoreMetadataList().size();
#16 8.477 [javac] ^
#16 8.477 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.477 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.477 [javac] ^
#16 8.477 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.477 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.477 [javac] ^
#16 8.477 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.477 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.477 [javac] ^
#16 8.477 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.477 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.477 [javac] ^
#16 8.477 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.477 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.477 [javac] ^
#16 8.477 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.477 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.477 [javac] ^
#16 8.478 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.478 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.478 [javac] ^
#16 8.478 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.478 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.478 [javac] ^
#16 8.478 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.478 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.478 [javac] ^
#16 8.578 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.578 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.578 [javac] ^
#16 8.678 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#16 8.678 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#16 8.678 [javac] ^
#16 8.678 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#16 8.678 [javac] URL url = new URL(urlPath);
#16 8.678 [javac] ^
#16 8.779 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.779 [javac] BitWriter out = new BitWriter();
#16 8.779 [javac] ^
#16 8.779 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.779 [javac] BitWriter out = new BitWriter();
#16 8.779 [javac] ^
#16 8.879 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.879 [javac] return new Double(v);
#16 8.879 [javac] ^
#16 9.480 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.480 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.480 [javac] ^
#16 9.480 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.480 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.480 [javac] ^
#16 9.480 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.480 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.480 [javac] ^
#16 9.581 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.581 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 9.581 [javac] ^
#16 9.781 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.781 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.781 [javac] ^
#16 9.881 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.881 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.881 [javac] ^
#16 9.981 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.981 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.981 [javac] ^
#16 9.982 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.982 [javac] protected ReflectedUniverse r;
#16 9.982 [javac] ^
#16 9.982 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.982 [javac] r = new ReflectedUniverse();
#16 9.982 [javac] ^
#16 9.982 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 9.982 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.982 [javac] ^
#16 9.982 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.982 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.982 [javac] ^
#16 9.982 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 9.982 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.982 [javac] ^
#16 9.982 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 9.982 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.982 [javac] ^
#16 9.982 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 9.982 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.982 [javac] ^
#16 9.982 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 9.982 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.982 [javac] ^
#16 9.982 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 9.982 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.982 [javac] ^
#16 9.982 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 9.982 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.982 [javac] ^
#16 9.982 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 9.982 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.982 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 10.08 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.08 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 10.08 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.08 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 10.08 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.08 [javac] ^
#16 10.08 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 10.08 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.08 [javac] ^
#16 10.18 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.18 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.18 [javac] ^
#16 10.18 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.18 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.18 [javac] ^
#16 10.18 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.18 [javac] result[i] = new Double(readNumber().doubleValue());
#16 10.18 [javac] ^
#16 10.18 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.18 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.18 [javac] 55 warnings
#16 10.21
#16 10.21 formats-bsd.jar:
#16 10.22 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.34 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 10.35 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 10.41 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 10.41 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 10.41 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.41
#16 10.41 deps-formats-gpl:
#16 10.41
#16 10.41 jar-formats-gpl:
#16 10.51 [echo] isSnapshot = true
#16 10.65
#16 10.65 init-title:
#16 10.65 [echo] ----------=========== formats-gpl ===========----------
#16 10.65
#16 10.65 init-timestamp:
#16 10.65
#16 10.65 init:
#16 10.65
#16 10.65 copy-resources:
#16 10.65 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.65 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.65
#16 10.65 compile:
#16 11.03 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.35 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.38 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.39 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.40 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.41 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.42 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.44 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.44 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.49 [resolver:resolve] Resolving artifacts
#16 11.49 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.49 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.54 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.54 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.55 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.55 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.57 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.78 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 11.78 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 11.78 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 11.78 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 13.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.08 [javac] import loci.formats.codec.BitWriter;
#16 13.08 [javac] ^
#16 13.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.08 [javac] import loci.formats.codec.BitWriter;
#16 13.08 [javac] ^
#16 14.98 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 14.98 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 14.98 [javac] ^
#16 14.98 [javac] cast to Object for a varargs call
#16 14.98 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 15.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.08 [javac] BitWriter bits = null;
#16 15.08 [javac] ^
#16 15.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.08 [javac] bits = new BitWriter(planes[index].length / 8);
#16 15.08 [javac] ^
#16 15.38 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 15.38 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 15.38 [javac] ^
#16 15.78 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.78 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.78 [javac] ^
#16 15.78 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.78 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.78 [javac] ^
#16 16.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:169: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.06 [javac] Variable variable = group.findVariable(variableName);
#16 16.06 [javac] ^
#16 16.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:196: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.06 [javac] Variable variable = group.findVariable(variableName);
#16 16.06 [javac] ^
#16 16.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 16.06 [javac] List<Attribute> attributes = variable.getAttributes();
#16 16.06 [javac] ^
#16 16.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.06 [javac] String groupName = group.getName();
#16 16.06 [javac] ^
#16 16.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 16.06 [javac] List<Attribute> attributes = group.getAttributes();
#16 16.06 [javac] ^
#16 16.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.06 [javac] String variableName = variable.getName();
#16 16.06 [javac] ^
#16 16.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:269: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 16.06 [javac] Group nextParent = parent.findGroup(token);
#16 16.06 [javac] ^
#16 16.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 16.06 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 16.06 [javac] ^
#16 16.06 [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.06 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.06 [javac] 20 warnings
#16 16.06
#16 16.06 formats-gpl.jar:
#16 16.07 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.21 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 16.22 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 16.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 16.22 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 16.22 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.22
#16 16.22 deps-bio-formats-plugins:
#16 16.22
#16 16.22 jar-bio-formats-plugins:
#16 16.33 [echo] isSnapshot = true
#16 16.48
#16 16.48 init-title:
#16 16.48 [echo] ----------=========== bio-formats_plugins ===========----------
#16 16.48
#16 16.48 init-timestamp:
#16 16.48
#16 16.48 init:
#16 16.48
#16 16.48 copy-resources:
#16 16.48 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.48 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.48
#16 16.48 compile:
#16 16.75 [resolver:resolve] Resolving artifacts
#16 16.76 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.98 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 16.98 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 16.98 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 16.98 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 17.78 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.78 [javac] import loci.common.ReflectedUniverse;
#16 17.78 [javac] ^
#16 17.88 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.88 [javac] import loci.common.ReflectedUniverse;
#16 17.88 [javac] ^
#16 18.28 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.28 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.28 [javac] ^
#16 18.38 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#16 18.38 [javac] URL url = new URL(urlPath);
#16 18.38 [javac] ^
#16 18.48 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.48 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.48 [javac] ^
#16 18.48 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.48 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.48 [javac] ^
#16 18.58 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.58 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.58 [javac] ^
#16 18.58 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.58 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.58 [javac] ^
#16 18.78 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#16 18.78 [javac] url = new URL(path);
#16 18.78 [javac] ^
#16 18.96 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 18.96 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.96 [javac] 13 warnings
#16 18.96
#16 18.96 bio-formats-plugins.jar:
#16 18.96 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 18.99 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 19.00 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 19.00 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 19.00 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 19.00 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 19.00
#16 19.00 deps-bio-formats-tools:
#16 19.00
#16 19.00 jar-bio-formats-tools:
#16 19.09 [echo] isSnapshot = true
#16 19.22
#16 19.22 init-title:
#16 19.22 [echo] ----------=========== bio-formats-tools ===========----------
#16 19.22
#16 19.22 init-timestamp:
#16 19.22
#16 19.22 init:
#16 19.22
#16 19.22 copy-resources:
#16 19.22 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.22
#16 19.22 compile:
#16 19.47 [resolver:resolve] Resolving artifacts
#16 19.47 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.68 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.68 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 19.68 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 19.68 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 20.81 [javac] 4 warnings
#16 20.81
#16 20.81 bio-formats-tools.jar:
#16 20.82 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.82 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 20.83 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 20.86 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 20.86 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 20.86 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.86
#16 20.86 deps-tests:
#16 20.86
#16 20.86 jar-tests:
#16 20.97 [echo] isSnapshot = true
#16 21.12
#16 21.12 init-title:
#16 21.12 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 21.12
#16 21.12 init-timestamp:
#16 21.12
#16 21.12 init:
#16 21.12
#16 21.12 copy-resources:
#16 21.12 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.12
#16 21.12 compile:
#16 21.47 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.54 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.55 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.04 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.49 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 22.51 [resolver:resolve] Resolving artifacts
#16 22.51 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.55 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.56 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.03 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.39 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 23.40 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.61 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 23.61 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 23.61 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 23.61 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 24.71 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.71 [javac] int index = unflattenedReader.getCoreIndex();
#16 24.71 [javac] ^
#16 24.71 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.71 [javac] reader.setCoreIndex(index);
#16 24.71 [javac] ^
#16 24.91 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2259: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.91 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.91 [javac] ^
#16 24.91 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2425: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.91 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.91 [javac] ^
#16 25.21 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.21 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 25.21 [javac] ^
#16 25.21 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.21 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 25.21 [javac] ^
#16 25.21 [javac] Note: Some input files use unchecked or unsafe operations.
#16 25.21 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 25.21 [javac] 10 warnings
#16 25.22
#16 25.22 tests.jar:
#16 25.23 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 25.24 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 25.25 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 25.25 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 25.25 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.25 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 25.25
#16 25.25 jars:
#16 25.25
#16 25.25 copy-jars:
#16 25.25
#16 25.25 deps-formats-api:
#16 25.30 [echo] isSnapshot = true
#16 25.34
#16 25.34 install-pom:
#16 25.45 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 25.46 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.46 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 25.46
#16 25.46 jar-formats-api:
#16 25.59 [echo] isSnapshot = true
#16 25.71
#16 25.71 init-title:
#16 25.71 [echo] ----------=========== formats-api ===========----------
#16 25.71
#16 25.71 init-timestamp:
#16 25.71
#16 25.71 init:
#16 25.71
#16 25.71 copy-resources:
#16 25.71
#16 25.71 compile:
#16 25.84 [resolver:resolve] Resolving artifacts
#16 25.85
#16 25.85 formats-api.jar:
#16 25.86 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 25.86 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 25.87 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 25.87 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.87 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.87
#16 25.87 deps-turbojpeg:
#16 25.87
#16 25.87 jar-turbojpeg:
#16 25.96 [echo] isSnapshot = true
#16 26.08
#16 26.08 init-title:
#16 26.08 [echo] ----------=========== turbojpeg ===========----------
#16 26.08
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#16 26.10
#16 26.10 jar:
#16 26.10 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 26.11 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 26.11 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 26.11 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.12 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
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#16 26.12 deps-formats-bsd:
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#16 26.20 [echo] isSnapshot = true
#16 26.33
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#16 26.33 [echo] ----------=========== formats-bsd ===========----------
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#16 26.57 formats-bsd.jar:
#16 26.63 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 26.63 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 26.66 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 26.67 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.67 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
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#16 26.67 deps-formats-gpl:
#16 26.67
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#16 26.87 [echo] ----------=========== formats-gpl ===========----------
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#16 27.15 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 27.15 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 27.15 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 27.15 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.15 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
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#16 27.15 deps-bio-formats-plugins:
#16 27.15
#16 27.15 jar-bio-formats-plugins:
#16 27.24 [echo] isSnapshot = true
#16 27.38
#16 27.38 init-title:
#16 27.38 [echo] ----------=========== bio-formats_plugins ===========----------
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#16 27.68 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 27.69 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 27.69 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 27.69 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.69 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.69
#16 27.69 deps-bio-formats-tools:
#16 27.69
#16 27.69 jar-bio-formats-tools:
#16 27.78 [echo] isSnapshot = true
#16 27.92
#16 27.92 init-title:
#16 27.92 [echo] ----------=========== bio-formats-tools ===========----------
#16 27.92
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#16 27.92
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#16 28.20 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 28.21 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 28.21 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 28.21 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 28.21 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 28.21
#16 28.21 deps-tests:
#16 28.21
#16 28.21 jar-tests:
#16 28.31 [echo] isSnapshot = true
#16 28.45
#16 28.45 init-title:
#16 28.45 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 28.45
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#16 28.45
#16 28.45 init:
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#16 28.46
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#16 28.76
#16 28.76 tests.jar:
#16 28.77 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 28.78 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 28.78 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 28.78 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 28.78 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.78
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#16 28.78
#16 28.78 tools:
#16 28.78 [echo] ----------=========== bioformats_package ===========----------
#16 28.87 [echo] isSnapshot = true
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#16 29.33 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.36 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.25-SNAPSHOT/ome-common-6.0.25-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.39 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.41 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.42 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.49 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.51 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.56 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.57 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.81 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.86 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.88 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 29.95 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 30.73 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 31.04 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.11 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 31.91 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.93 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 32.41 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 33.05 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.16 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.23 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.24 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.25 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.31 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.47 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.49 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.50 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.51 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.52 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.55 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.95 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.06 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.43 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 40.21 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 40.79 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 40.79 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 40.80 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 40.83 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 40.83 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 40.84
#16 40.84 BUILD SUCCESSFUL
#16 40.84 Total time: 39 seconds
#16 DONE 44.2s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.2s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.4s done
#18 writing image sha256:b53a26a06914ac0ec1d6fc97dce6307021d39168d0fc926a2ff54a1438a5ee92 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.4s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS