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#14 410.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xdoc/1.0/doxia-module-xdoc-1.0.jar
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#14 410.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xdoc/1.0/doxia-module-xdoc-1.0.jar (28 kB at 58 kB/s)
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#14 410.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/jdom/jdom/1.1/jdom-1.1.jar (153 kB at 306 kB/s)
#14 411.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.pom
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#14 411.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers-git/1.13.0/maven-scm-providers-git-1.13.0.pom
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#14 411.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers/1.13.0/maven-scm-providers-1.13.0.pom
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#14 411.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm/1.13.0/maven-scm-1.13.0.pom
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#14 411.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.13.0/maven-scm-provider-git-commons-1.13.0.pom
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#14 411.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.13.0/maven-scm-api-1.13.0.pom
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#14 411.1 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.3.1/plexus-utils-3.3.1.pom
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#14 411.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.jar
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#14 411.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.13.0/maven-scm-provider-git-commons-1.13.0.jar
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#14 411.2 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.jar (72 kB at 2.3 MB/s)
#14 411.2 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.13.0/maven-scm-api-1.13.0.jar (112 kB at 3.4 MB/s)
#14 411.2 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.3.1/plexus-utils-3.3.1.jar (262 kB at 6.9 MB/s)
#14 411.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.13.0/maven-scm-manager-plexus-1.13.0.pom
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#14 411.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-managers/1.13.0/maven-scm-managers-1.13.0.pom
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#14 417.5 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/contribs/jersey-apache-client4/1.17.1/jersey-apache-client4-1.17.1.pom
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#14 417.5 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/contribs/jersey-contribs/1.17.1/jersey-contribs-1.17.1.pom
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#14 417.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.3.5/httpclient-4.3.5.pom
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#14 417.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/siesta/siesta-jackson/1.7/siesta-jackson-1.7.pom
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#14 417.9 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jaxrs/jackson-jaxrs-providers/2.3.1/jackson-jaxrs-providers-2.3.1.pom
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#14 418.0 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/module/jackson-module-jaxb-annotations/2.3.1/jackson-module-jaxb-annotations-2.3.1.pom
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#14 418.0 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/spice/zapper/spice-zapper/1.3/spice-zapper-1.3.pom
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#14 418.0 Downloading from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf-proto/1.9/hawtbuf-proto-1.9.pom
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#14 418.1 Downloading from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf-project/1.9/hawtbuf-project-1.9.pom
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#14 418.1 Downloading from central: https://repo.maven.apache.org/maven2/org/fusesource/fusesource-pom/1.9/fusesource-pom-1.9.pom
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#14 418.1 Downloading from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf/1.9/hawtbuf-1.9.pom
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#14 418.2 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.15/plexus-interpolation-1.15.pom
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#14 418.2 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus/3.0.1/plexus-3.0.1.pom
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#14 418.2 Downloading from central: https://repo.maven.ap
#14 418.2 [output clipped, log limit 2MiB reached]
#14 514.3 SLF4J: No SLF4J providers were found.
#14 514.3 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 514.3 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 525.6s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s
#16 [12/13] RUN ant jars tools
#16 0.642 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.067 [echo] isSnapshot = true
#16 1.170
#16 1.170 copy-jars:
#16 1.170
#16 1.170 deps-formats-api:
#16 1.251 [echo] isSnapshot = true
#16 1.309
#16 1.309 install-pom:
#16 1.509 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 1.515 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 1.520 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.522
#16 1.522 jar-formats-api:
#16 1.635 [echo] isSnapshot = true
#16 1.816
#16 1.816 init-title:
#16 1.816 [echo] ----------=========== formats-api ===========----------
#16 1.816
#16 1.816 init-timestamp:
#16 1.821
#16 1.821 init:
#16 1.821
#16 1.821 copy-resources:
#16 1.822 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.836 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.839
#16 1.839 compile:
#16 2.019 [resolver:resolve] Resolving artifacts
#16 2.046 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.731 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.731 [javac] import loci.common.ReflectedUniverse;
#16 2.731 [javac] ^
#16 2.831 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.831 [javac] int currentIndex = r.getCoreIndex();
#16 2.832 [javac] ^
#16 2.832 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.832 [javac] r.setCoreIndex(coreIndex);
#16 2.832 [javac] ^
#16 2.832 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.832 [javac] r.setCoreIndex(currentIndex);
#16 2.832 [javac] ^
#16 2.932 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.933 [javac] public void setCoreIndex(int no) {
#16 2.933 [javac] ^
#16 2.933 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.933 [javac] public int getCoreIndex() {
#16 2.933 [javac] ^
#16 2.933 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 2.933 [javac] public int coreIndexToSeries(int index)
#16 2.933 [javac] ^
#16 2.933 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 2.933 [javac] public int seriesToCoreIndex(int series)
#16 2.933 [javac] ^
#16 3.034 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.034 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.034 [javac] ^
#16 3.034 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.034 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.034 [javac] ^
#16 3.034 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.034 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.034 [javac] ^
#16 3.034 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.034 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.034 [javac] ^
#16 3.035 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.035 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.035 [javac] ^
#16 3.135 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.135 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.135 [javac] ^
#16 3.135 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.135 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.135 [javac] ^
#16 3.236 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.236 [javac] public void setCoreIndex(int no) {
#16 3.236 [javac] ^
#16 3.236 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.236 [javac] public int getCoreIndex() {
#16 3.236 [javac] ^
#16 3.236 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.236 [javac] public int coreIndexToSeries(int index) {
#16 3.237 [javac] ^
#16 3.237 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.237 [javac] public int seriesToCoreIndex(int series) {
#16 3.237 [javac] ^
#16 3.237 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.237 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.237 [javac] ^
#16 3.337 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.337 [javac] return getReader().getCoreMetadataList();
#16 3.337 [javac] ^
#16 3.337 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.337 [javac] return getReader().getCoreIndex();
#16 3.337 [javac] ^
#16 3.338 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.338 [javac] getReader().setCoreIndex(no);
#16 3.338 [javac] ^
#16 3.338 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.338 [javac] return getReader().seriesToCoreIndex(series);
#16 3.338 [javac] ^
#16 3.338 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.338 [javac] return getReader().coreIndexToSeries(index);
#16 3.338 [javac] ^
#16 3.338 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.338 [javac] public void setCoreIndex(int no) {
#16 3.338 [javac] ^
#16 3.338 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.338 [javac] public int getCoreIndex() {
#16 3.338 [javac] ^
#16 3.338 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.338 [javac] public int coreIndexToSeries(int index) {
#16 3.338 [javac] ^
#16 3.338 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.338 [javac] public int seriesToCoreIndex(int series) {
#16 3.338 [javac] ^
#16 3.338 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.339 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.339 [javac] ^
#16 3.339 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.339 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.339 [javac] ^
#16 3.339 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.339 [javac] return reader.getCoreIndex();
#16 3.339 [javac] ^
#16 3.339 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.339 [javac] reader.setCoreIndex(no);
#16 3.339 [javac] ^
#16 3.339 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.339 [javac] return reader.seriesToCoreIndex(series);
#16 3.339 [javac] ^
#16 3.339 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.339 [javac] return reader.coreIndexToSeries(index);
#16 3.339 [javac] ^
#16 3.494 [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.494 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.494 [javac] 35 warnings
#16 3.495
#16 3.495 formats-api.jar:
#16 3.495 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.522 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.554 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 3.558 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 3.572 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 3.573 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 3.575 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.576
#16 3.576 deps-turbojpeg:
#16 3.576
#16 3.576 jar-turbojpeg:
#16 3.682 [echo] isSnapshot = true
#16 3.851
#16 3.851 init-title:
#16 3.851 [echo] ----------=========== turbojpeg ===========----------
#16 3.851
#16 3.851 init-timestamp:
#16 3.852
#16 3.852 init:
#16 3.852
#16 3.852 copy-resources:
#16 3.852 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 3.853
#16 3.853 compile:
#16 3.864 [resolver:resolve] Resolving artifacts
#16 3.867 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.612
#16 4.612 jar:
#16 4.617 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 4.805 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 4.814 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 4.816 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 4.818 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 4.822 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 4.823
#16 4.823 deps-formats-bsd:
#16 4.823
#16 4.823 jar-formats-bsd:
#16 4.925 [echo] isSnapshot = true
#16 5.100
#16 5.100 init-title:
#16 5.100 [echo] ----------=========== formats-bsd ===========----------
#16 5.100
#16 5.100 init-timestamp:
#16 5.101
#16 5.101 init:
#16 5.101
#16 5.101 copy-resources:
#16 5.101 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.105 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.105
#16 5.105 compile:
#16 5.312 [resolver:resolve] Resolving artifacts
#16 5.344 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.357 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.357 [javac] import loci.common.ReflectedUniverse;
#16 6.357 [javac] ^
#16 6.858 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.858 [javac] core.size() != reader.getCoreMetadataList().size())
#16 6.858 [javac] ^
#16 6.858 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.858 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.858 [javac] ^
#16 6.958 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.958 [javac] int n = reader.getCoreMetadataList().size();
#16 6.958 [javac] ^
#16 6.958 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.958 [javac] reader.setCoreIndex(coreIndex);
#16 6.958 [javac] ^
#16 6.958 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.958 [javac] int n = reader.getCoreMetadataList().size();
#16 6.959 [javac] ^
#16 6.959 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.959 [javac] int n = reader.getCoreMetadataList().size();
#16 6.959 [javac] ^
#16 6.959 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.959 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 6.959 [javac] ^
#16 6.959 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.959 [javac] int n = reader.getCoreMetadataList().size();
#16 6.959 [javac] ^
#16 6.959 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.959 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 6.959 [javac] ^
#16 6.959 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.959 [javac] int n = reader.getCoreMetadataList().size();
#16 6.959 [javac] ^
#16 6.959 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.959 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 6.959 [javac] ^
#16 6.959 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.959 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.959 [javac] ^
#16 6.959 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.959 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.959 [javac] ^
#16 6.959 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.959 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 6.960 [javac] ^
#16 6.960 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.960 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 6.960 [javac] ^
#16 6.960 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.960 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 6.960 [javac] ^
#16 6.960 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.960 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 6.960 [javac] ^
#16 6.960 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.960 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 6.960 [javac] ^
#16 6.960 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.960 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 6.960 [javac] ^
#16 7.061 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.061 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.061 [javac] ^
#16 7.161 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.161 [javac] BitWriter out = new BitWriter();
#16 7.161 [javac] ^
#16 7.161 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.161 [javac] BitWriter out = new BitWriter();
#16 7.161 [javac] ^
#16 8.062 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.062 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 8.062 [javac] ^
#16 8.062 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 8.062 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 8.062 [javac] ^
#16 8.162 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.162 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 8.162 [javac] ^
#16 8.162 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.162 [javac] protected ReflectedUniverse r;
#16 8.162 [javac] ^
#16 8.162 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.162 [javac] r = new ReflectedUniverse();
#16 8.162 [javac] ^
#16 8.162 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 8.162 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 8.162 [javac] ^
#16 8.162 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 8.163 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 8.163 [javac] ^
#16 8.163 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 8.163 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 8.163 [javac] ^
#16 8.163 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 8.163 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 8.163 [javac] ^
#16 8.163 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 8.163 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 8.163 [javac] ^
#16 8.163 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 8.163 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 8.163 [javac] ^
#16 8.163 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 8.163 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 8.163 [javac] ^
#16 8.163 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 8.163 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 8.163 [javac] ^
#16 8.163 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 8.163 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 8.163 [javac] ^
#16 8.264 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 8.264 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 8.264 [javac] ^
#16 8.364 [javac] Note: Some input files use unchecked or unsafe operations.
#16 8.364 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 8.364 [javac] 38 warnings
#16 8.436
#16 8.436 formats-bsd.jar:
#16 8.445 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 8.558 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 8.562 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 8.565 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 8.567 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 8.569 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 8.570
#16 8.570 deps-formats-gpl:
#16 8.570
#16 8.570 jar-formats-gpl:
#16 8.670 [echo] isSnapshot = true
#16 8.846
#16 8.846 init-title:
#16 8.846 [echo] ----------=========== formats-gpl ===========----------
#16 8.846
#16 8.846 init-timestamp:
#16 8.847
#16 8.847 init:
#16 8.847
#16 8.847 copy-resources:
#16 8.847 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.848 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.849
#16 8.849 compile:
#16 9.328 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 9.585 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 9.629 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 9.634 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 9.649 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 9.656 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 9.668 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 9.681 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 9.689 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 9.732 [resolver:resolve] Resolving artifacts
#16 9.742 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 9.742 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 9.784 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 9.785 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 9.799 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 9.799 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 9.817 [javac] Compiling 174 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.03 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.03 [javac] import loci.formats.codec.BitWriter;
#16 11.03 [javac] ^
#16 11.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.13 [javac] import loci.formats.codec.BitWriter;
#16 11.13 [javac] ^
#16 12.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 12.73 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 12.73 [javac] ^
#16 12.73 [javac] cast to Object for a varargs call
#16 12.73 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 12.83 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.83 [javac] BitWriter bits = null;
#16 12.83 [javac] ^
#16 12.83 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.83 [javac] bits = new BitWriter(planes[index].length / 8);
#16 12.83 [javac] ^
#16 13.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 13.13 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 13.13 [javac] ^
#16 13.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.53 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 13.53 [javac] ^
#16 13.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.53 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 13.53 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 13.73 [javac] Variable variable = group.findVariable(variableName);
#16 13.73 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 13.73 [javac] Variable variable = group.findVariable(variableName);
#16 13.73 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 13.73 [javac] List<Attribute> attributes = variable.getAttributes();
#16 13.73 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 13.73 [javac] String groupName = group.getName();
#16 13.73 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 13.73 [javac] List<Attribute> attributes = group.getAttributes();
#16 13.73 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 13.73 [javac] String variableName = variable.getName();
#16 13.73 [javac] ^
#16 13.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 13.73 [javac] Group nextParent = parent.findGroup(token);
#16 13.73 [javac] ^
#16 13.73 [javac] Note: Some input files use unchecked or unsafe operations.
#16 13.73 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 13.73 [javac] 15 warnings
#16 13.83
#16 13.83 formats-gpl.jar:
#16 13.84 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 13.98 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 13.99 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 13.99 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 13.99 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 13.99 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 13.99
#16 13.99 deps-bio-formats-plugins:
#16 13.99
#16 13.99 jar-bio-formats-plugins:
#16 14.09 [echo] isSnapshot = true
#16 14.27
#16 14.27 init-title:
#16 14.27 [echo] ----------=========== bio-formats_plugins ===========----------
#16 14.27
#16 14.27 init-timestamp:
#16 14.27
#16 14.27 init:
#16 14.27
#16 14.27 copy-resources:
#16 14.27 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 14.27 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 14.27
#16 14.27 compile:
#16 14.53 [resolver:resolve] Resolving artifacts
#16 14.55 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.36 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.36 [javac] import loci.common.ReflectedUniverse;
#16 15.36 [javac] ^
#16 15.36 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.36 [javac] import loci.common.ReflectedUniverse;
#16 15.36 [javac] ^
#16 15.76 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 15.76 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 15.76 [javac] ^
#16 15.86 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.86 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 15.86 [javac] ^
#16 15.86 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.86 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 15.86 [javac] ^
#16 15.96 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.96 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 15.96 [javac] ^
#16 15.96 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.96 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 15.96 [javac] ^
#16 16.26 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 16.26 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.26 [javac] 7 warnings
#16 16.30
#16 16.30 bio-formats-plugins.jar:
#16 16.31 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 16.34 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 16.34 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 16.35 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 16.35 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 16.35 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 16.35
#16 16.35 deps-bio-formats-tools:
#16 16.35
#16 16.35 jar-bio-formats-tools:
#16 16.45 [echo] isSnapshot = true
#16 16.62
#16 16.62 init-title:
#16 16.62 [echo] ----------=========== bio-formats-tools ===========----------
#16 16.62
#16 16.62 init-timestamp:
#16 16.62
#16 16.62 init:
#16 16.62
#16 16.62 copy-resources:
#16 16.62 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 16.62
#16 16.62 compile:
#16 16.86 [resolver:resolve] Resolving artifacts
#16 16.87 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 17.93
#16 17.93 bio-formats-tools.jar:
#16 17.94 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 17.94 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 17.95 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 17.95 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 17.95 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 17.95 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 17.95
#16 17.95 deps-tests:
#16 17.95
#16 17.95 jar-tests:
#16 18.05 [echo] isSnapshot = true
#16 18.22
#16 18.22 init-title:
#16 18.22 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 18.22
#16 18.22 init-timestamp:
#16 18.22
#16 18.22 init:
#16 18.22
#16 18.22 copy-resources:
#16 18.22 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 18.22
#16 18.22 compile:
#16 18.54 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 18.63 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 18.64 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.27 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.71 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 19.74 [resolver:resolve] Resolving artifacts
#16 19.75 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 19.79 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 19.80 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.20 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.56 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 20.57 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 21.58 [javac] int index = unflattenedReader.getCoreIndex();
#16 21.58 [javac] ^
#16 21.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 21.58 [javac] reader.setCoreIndex(index);
#16 21.58 [javac] ^
#16 21.78 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2259: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 21.78 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 21.78 [javac] ^
#16 21.79 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2425: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 21.79 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 21.79 [javac] ^
#16 21.99 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 21.99 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 21.99 [javac] ^
#16 21.99 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 21.99 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 21.99 [javac] ^
#16 21.99 [javac] Note: Some input files use unchecked or unsafe operations.
#16 21.99 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 21.99 [javac] 6 warnings
#16 22.02
#16 22.02 tests.jar:
#16 22.02 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 22.04 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 22.04 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 22.04 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 22.05 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 22.05 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 22.05
#16 22.05 jars:
#16 22.05
#16 22.05 copy-jars:
#16 22.05
#16 22.05 deps-formats-api:
#16 22.10 [echo] isSnapshot = true
#16 22.15
#16 22.15 install-pom:
#16 22.31 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 22.31 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 22.31 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 22.31
#16 22.31 jar-formats-api:
#16 22.41 [echo] isSnapshot = true
#16 22.57
#16 22.57 init-title:
#16 22.57 [echo] ----------=========== formats-api ===========----------
#16 22.57
#16 22.57 init-timestamp:
#16 22.57
#16 22.57 init:
#16 22.57
#16 22.57 copy-resources:
#16 22.57
#16 22.57 compile:
#16 22.72 [resolver:resolve] Resolving artifacts
#16 22.73
#16 22.73 formats-api.jar:
#16 22.75 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 22.75 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 22.75 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 22.75 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 22.75 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 22.76
#16 22.76 deps-turbojpeg:
#16 22.76
#16 22.76 jar-turbojpeg:
#16 23.01 [echo] isSnapshot = true
#16 23.17
#16 23.17 init-title:
#16 23.17 [echo] ----------=========== turbojpeg ===========----------
#16 23.17
#16 23.17 init-timestamp:
#16 23.17
#16 23.17 init:
#16 23.17
#16 23.17 copy-resources:
#16 23.17
#16 23.17 compile:
#16 23.18 [resolver:resolve] Resolving artifacts
#16 23.19
#16 23.19 jar:
#16 23.19 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 23.20 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 23.20 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 23.20 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 23.21 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 23.21
#16 23.21 deps-formats-bsd:
#16 23.21
#16 23.21 jar-formats-bsd:
#16 23.30 [echo] isSnapshot = true
#16 23.47
#16 23.47 init-title:
#16 23.47 [echo] ----------=========== formats-bsd ===========----------
#16 23.47
#16 23.47 init-timestamp:
#16 23.47
#16 23.47 init:
#16 23.47
#16 23.47 copy-resources:
#16 23.47
#16 23.47 compile:
#16 23.68 [resolver:resolve] Resolving artifacts
#16 23.69
#16 23.69 formats-bsd.jar:
#16 23.73 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 23.73 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 23.74 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 23.74 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 23.74 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 23.74
#16 23.74 deps-formats-gpl:
#16 23.74
#16 23.74 jar-formats-gpl:
#16 23.86 [echo] isSnapshot = true
#16 24.03
#16 24.03 init-title:
#16 24.03 [echo] ----------=========== formats-gpl ===========----------
#16 24.03
#16 24.03 init-timestamp:
#16 24.03
#16 24.03 init:
#16 24.03
#16 24.03 copy-resources:
#16 24.03
#16 24.03 compile:
#16 24.29 [resolver:resolve] Resolving artifacts
#16 24.32
#16 24.32 formats-gpl.jar:
#16 24.37 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 24.38 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 24.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 24.38 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.38 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 24.39
#16 24.39 deps-bio-formats-plugins:
#16 24.39
#16 24.39 jar-bio-formats-plugins:
#16 24.48 [echo] isSnapshot = true
#16 24.64
#16 24.64 init-title:
#16 24.64 [echo] ----------=========== bio-formats_plugins ===========----------
#16 24.64
#16 24.64 init-timestamp:
#16 24.64
#16 24.64 init:
#16 24.64
#16 24.64 copy-resources:
#16 24.65
#16 24.65 compile:
#16 24.92 [resolver:resolve] Resolving artifacts
#16 24.94
#16 24.94 bio-formats-plugins.jar:
#16 24.96 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 24.97 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 24.97 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 24.97 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.97 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 24.98
#16 24.98 deps-bio-formats-tools:
#16 24.98
#16 24.98 jar-bio-formats-tools:
#16 25.07 [echo] isSnapshot = true
#16 25.24
#16 25.24 init-title:
#16 25.24 [echo] ----------=========== bio-formats-tools ===========----------
#16 25.24
#16 25.24 init-timestamp:
#16 25.24
#16 25.24 init:
#16 25.24
#16 25.24 copy-resources:
#16 25.24
#16 25.24 compile:
#16 25.49 [resolver:resolve] Resolving artifacts
#16 25.50
#16 25.50 bio-formats-tools.jar:
#16 25.51 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 25.51 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 25.51 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 25.51 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.51 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 25.52
#16 25.52 deps-tests:
#16 25.52
#16 25.52 jar-tests:
#16 25.61 [echo] isSnapshot = true
#16 25.77
#16 25.77 init-title:
#16 25.77 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 25.77
#16 25.77 init-timestamp:
#16 25.77
#16 25.77 init:
#16 25.77
#16 25.77 copy-resources:
#16 25.77
#16 25.77 compile:
#16 26.02 [resolver:resolve] Resolving artifacts
#16 26.03
#16 26.03 tests.jar:
#16 26.04 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 26.04 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 26.04 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 26.05 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.05 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.05
#16 26.05 jars:
#16 26.05
#16 26.05 tools:
#16 26.05 [echo] ----------=========== bioformats_package ===========----------
#16 26.14 [echo] isSnapshot = true
#16 26.31
#16 26.31 init-timestamp:
#16 26.31
#16 26.31 bundle:
#16 26.56 [resolver:resolve] Resolving artifacts
#16 26.57 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.60 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.25-SNAPSHOT/ome-common-6.0.25-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.62 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.64 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.65 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.71 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.73 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.78 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.79 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.02 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.07 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.09 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.15 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.16 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.17 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.17 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.35 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.88 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.88 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.89 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.89 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.98 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.98 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.99 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.05 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.11 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.12 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.13 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.27 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.34 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.38 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.39 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.42 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.45 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.96 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.98 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.01 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.08 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.19 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.20 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.22 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.23 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.47 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.54 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.60 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.70 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.71 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.72 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.84 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.85 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.33 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.34 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.46 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.51 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.52 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.53 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.59 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.62 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.78 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.80 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.81 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.82 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.82 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.85 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.25 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.36 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.76 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 37.63 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.24 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 38.24 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 38.25 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 38.28 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 38.29 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 38.29
#16 38.29 BUILD SUCCESSFUL
#16 38.29 Total time: 37 seconds
#16 DONE 40.5s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.3s done
#18 writing image sha256:30ffaf1f5601423e15cadea37f12bcdaeb61b56bc2f8919aa9d6917571bcd5d1 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.4s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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