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Full Log#14 441.9 Progress (1): 82/392 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-decoration-model/1.0/doxia-decoration-model-1.0.jar (49 kB at 108 kB/s)
#14 441.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-fml/1.0/doxia-module-fml-1.0.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-apt/1.0/doxia-module-apt-1.0.jar (47 kB at 101 kB/s)
#14 441.9 Progress (3): 392 kB | 208 kB | 475/571 kB
Downloaded from central: https://repo.maven.apache.org/maven2/commons-lang/commons-lang/2.1/commons-lang-2.1.jar (208 kB at 447 kB/s)
#14 441.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xhtml/1.0/doxia-module-xhtml-1.0.jar
#14 441.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xdoc/1.0/doxia-module-xdoc-1.0.jar
#14 441.9 Progress (2): 392 kB | 479/571 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/velocity/velocity/1.5/velocity-1.5.jar (392 kB at 838 kB/s)
#14 441.9 Progress (2): 557/571 kB | 16/19 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/jdom/jdom/1.1/jdom-1.1.jar
#14 441.9 Progress (2): 565/571 kB | 19 kB
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#14 448.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/buildsupport/5/buildsupport-5.pom
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Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/buildsupport/5/buildsupport-5.pom (22 kB at 407 kB/s)
#14 448.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/siesta/siesta-common/1.7/siesta-common-1.7.pom
#14 448.7 Progress (1): 2.1 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/siesta/siesta-common/1.7/siesta-common-1.7.pom (2.1 kB at 69 kB/s)
#14 448.8 Downloading from central: https://repo.maven.apache.org/maven2/javax/ws/rs/jsr311-api/1.1.1/jsr311-api-1.1.1.pom
#14 448.8 Progress (1): 4.1/5.5 kB
Progress (1): 5.5 kB
Downloaded from central: https://repo.maven.apache.org/maven2/javax/ws/rs/jsr311-api/1.1.1/jsr311-api-1.1.1.pom (5.5 kB at 210 kB/s)
#14 448.8 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/jersey-core/1.17.1/jersey-core-1.17.1.pom
#14 448.8 Progress (1): 4.1/10 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/sun/jersey/jersey-core/1.17.1/jersey-core-1.17.1.pom (10 kB at 371 kB/s)
#14 448.8 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/jersey-project/1.17.1/jersey-project-1.17.1.pom
#14 448.8 Progress (1): 4.1/21 kB
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#14 448.8 Downloading from central: https://repo.maven.apache.org/maven2/net/java/jvnet-parent/1/jvnet-parent-1.pom
#14 448.8 Progress (1): 4.1/4.7 kB
Progress (1): 4.7 kB
Downloaded from central: https://repo.maven.apache.org/maven2/net/java/jvnet-parent/1/jvnet-parent-1.pom (4.7 kB at 196 kB/s)
#14 448.9 Downloading from central: https://repo.maven.apache.org/maven2/javax/validation/validation-api/1.1.0.Final/validation-api-1.1.0.Final.pom
#14 448.9 Progress (1): 4.1/7.9 kB
Progress (1): 7.9 kB
Downloaded from central: https://repo.maven.apache.org/maven2/javax/validation/validation-api/1.1.0.Final/validation-api-1.1.0.Final.pom (7.9 kB at 342 kB/s)
#14 448.9 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/jersey-client/1.17.1/jersey-client-1.17.1.pom
#14 448.9 Progress (1): 4.1/6.7 kB
Progress (1): 6.7 kB
Downloaded from central: https://repo.maven.apache.org
#14 448.9 [output clipped, log limit 2MiB reached]
#14 546.7 SLF4J: No SLF4J providers were found.
#14 546.7 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 546.7 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 556.7s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.2s
#16 [12/13] RUN ant jars tools
#16 0.716 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.162 [echo] isSnapshot = true
#16 1.269
#16 1.269 copy-jars:
#16 1.269
#16 1.269 deps-formats-api:
#16 1.352 [echo] isSnapshot = true
#16 1.410
#16 1.410 install-pom:
#16 1.615 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 1.718 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 1.723 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.725
#16 1.725 jar-formats-api:
#16 1.839 [echo] isSnapshot = true
#16 2.025
#16 2.025 init-title:
#16 2.025 [echo] ----------=========== formats-api ===========----------
#16 2.025
#16 2.025 init-timestamp:
#16 2.029
#16 2.029 init:
#16 2.029
#16 2.029 copy-resources:
#16 2.030 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.045 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.048
#16 2.048 compile:
#16 2.237 [resolver:resolve] Resolving artifacts
#16 2.321 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.950 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.950 [javac] import loci.common.ReflectedUniverse;
#16 2.950 [javac] ^
#16 3.050 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.050 [javac] int currentIndex = r.getCoreIndex();
#16 3.050 [javac] ^
#16 3.050 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.051 [javac] r.setCoreIndex(coreIndex);
#16 3.051 [javac] ^
#16 3.051 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.051 [javac] r.setCoreIndex(currentIndex);
#16 3.051 [javac] ^
#16 3.251 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.251 [javac] public void setCoreIndex(int no) {
#16 3.251 [javac] ^
#16 3.251 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.251 [javac] public int getCoreIndex() {
#16 3.251 [javac] ^
#16 3.252 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.252 [javac] public int coreIndexToSeries(int index)
#16 3.252 [javac] ^
#16 3.252 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.252 [javac] public int seriesToCoreIndex(int series)
#16 3.252 [javac] ^
#16 3.252 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.252 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.252 [javac] ^
#16 3.352 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.353 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.353 [javac] ^
#16 3.353 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.353 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.353 [javac] ^
#16 3.353 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.353 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.353 [javac] ^
#16 3.353 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.353 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.354 [javac] ^
#16 3.454 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.454 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.454 [javac] ^
#16 3.454 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.454 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.454 [javac] ^
#16 3.554 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.555 [javac] public void setCoreIndex(int no) {
#16 3.555 [javac] ^
#16 3.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.555 [javac] public int getCoreIndex() {
#16 3.555 [javac] ^
#16 3.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.555 [javac] public int coreIndexToSeries(int index) {
#16 3.555 [javac] ^
#16 3.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.555 [javac] public int seriesToCoreIndex(int series) {
#16 3.555 [javac] ^
#16 3.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.555 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.555 [javac] ^
#16 3.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.555 [javac] return getReader().getCoreMetadataList();
#16 3.556 [javac] ^
#16 3.556 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.556 [javac] return getReader().getCoreIndex();
#16 3.556 [javac] ^
#16 3.556 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.556 [javac] getReader().setCoreIndex(no);
#16 3.556 [javac] ^
#16 3.556 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.556 [javac] return getReader().seriesToCoreIndex(series);
#16 3.556 [javac] ^
#16 3.556 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.556 [javac] return getReader().coreIndexToSeries(index);
#16 3.556 [javac] ^
#16 3.657 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.657 [javac] public void setCoreIndex(int no) {
#16 3.657 [javac] ^
#16 3.657 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.657 [javac] public int getCoreIndex() {
#16 3.657 [javac] ^
#16 3.657 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.657 [javac] public int coreIndexToSeries(int index) {
#16 3.657 [javac] ^
#16 3.657 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.657 [javac] public int seriesToCoreIndex(int series) {
#16 3.657 [javac] ^
#16 3.657 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.657 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.657 [javac] ^
#16 3.657 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.657 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.657 [javac] ^
#16 3.658 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.658 [javac] return reader.getCoreIndex();
#16 3.658 [javac] ^
#16 3.658 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.658 [javac] reader.setCoreIndex(no);
#16 3.658 [javac] ^
#16 3.658 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.658 [javac] return reader.seriesToCoreIndex(series);
#16 3.658 [javac] ^
#16 3.658 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.658 [javac] return reader.coreIndexToSeries(index);
#16 3.658 [javac] ^
#16 3.759 [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.759 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.759 [javac] 35 warnings
#16 3.788
#16 3.788 formats-api.jar:
#16 3.788 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.814 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.847 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 3.851 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 3.867 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 3.868 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 3.871 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.871
#16 3.871 deps-turbojpeg:
#16 3.871
#16 3.871 jar-turbojpeg:
#16 3.977 [echo] isSnapshot = true
#16 4.148
#16 4.148 init-title:
#16 4.148 [echo] ----------=========== turbojpeg ===========----------
#16 4.148
#16 4.148 init-timestamp:
#16 4.149
#16 4.149 init:
#16 4.149
#16 4.149 copy-resources:
#16 4.149 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.150
#16 4.150 compile:
#16 4.165 [resolver:resolve] Resolving artifacts
#16 4.170 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.912
#16 4.912 jar:
#16 4.917 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 5.103 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 5.111 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 5.136 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 5.138 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 5.142 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 5.143
#16 5.143 deps-formats-bsd:
#16 5.143
#16 5.143 jar-formats-bsd:
#16 5.243 [echo] isSnapshot = true
#16 5.417
#16 5.417 init-title:
#16 5.418 [echo] ----------=========== formats-bsd ===========----------
#16 5.418
#16 5.418 init-timestamp:
#16 5.418
#16 5.418 init:
#16 5.418
#16 5.418 copy-resources:
#16 5.418 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.422 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.423
#16 5.423 compile:
#16 5.631 [resolver:resolve] Resolving artifacts
#16 5.662 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.771 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.771 [javac] import loci.common.ReflectedUniverse;
#16 6.771 [javac] ^
#16 7.072 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.072 [javac] core.size() != reader.getCoreMetadataList().size())
#16 7.072 [javac] ^
#16 7.072 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.072 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 7.072 [javac] ^
#16 7.172 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.172 [javac] int n = reader.getCoreMetadataList().size();
#16 7.172 [javac] ^
#16 7.172 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.172 [javac] reader.setCoreIndex(coreIndex);
#16 7.172 [javac] ^
#16 7.172 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.172 [javac] int n = reader.getCoreMetadataList().size();
#16 7.173 [javac] ^
#16 7.173 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.173 [javac] int n = reader.getCoreMetadataList().size();
#16 7.173 [javac] ^
#16 7.173 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 7.173 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 7.173 [javac] ^
#16 7.173 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.173 [javac] int n = reader.getCoreMetadataList().size();
#16 7.173 [javac] ^
#16 7.173 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 7.173 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 7.173 [javac] ^
#16 7.173 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.173 [javac] int n = reader.getCoreMetadataList().size();
#16 7.173 [javac] ^
#16 7.173 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.173 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 7.173 [javac] ^
#16 7.173 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.173 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.173 [javac] ^
#16 7.173 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.173 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.174 [javac] ^
#16 7.174 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.174 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 7.174 [javac] ^
#16 7.174 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.174 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 7.174 [javac] ^
#16 7.174 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.174 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 7.174 [javac] ^
#16 7.174 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.174 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 7.174 [javac] ^
#16 7.174 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.174 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 7.174 [javac] ^
#16 7.174 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.174 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 7.174 [javac] ^
#16 7.275 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.275 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.275 [javac] ^
#16 7.375 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.375 [javac] BitWriter out = new BitWriter();
#16 7.375 [javac] ^
#16 7.375 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.375 [javac] BitWriter out = new BitWriter();
#16 7.375 [javac] ^
#16 8.376 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.376 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 8.376 [javac] ^
#16 8.376 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 8.377 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 8.377 [javac] ^
#16 8.477 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.477 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 8.477 [javac] ^
#16 8.477 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.477 [javac] protected ReflectedUniverse r;
#16 8.477 [javac] ^
#16 8.477 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.477 [javac] r = new ReflectedUniverse();
#16 8.477 [javac] ^
#16 8.577 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 8.577 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 8.577 [javac] ^
#16 8.577 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 8.578 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 8.578 [javac] ^
#16 8.578 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 8.578 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 8.578 [javac] ^
#16 8.578 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 8.578 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 8.578 [javac] ^
#16 8.578 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 8.578 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 8.578 [javac] ^
#16 8.578 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 8.578 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 8.578 [javac] ^
#16 8.578 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 8.578 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 8.578 [javac] ^
#16 8.578 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 8.578 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 8.579 [javac] ^
#16 8.579 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 8.579 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 8.579 [javac] ^
#16 8.679 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 8.679 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 8.679 [javac] ^
#16 8.679 [javac] Note: Some input files use unchecked or unsafe operations.
#16 8.679 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 8.679 [javac] 38 warnings
#16 8.910
#16 8.910 formats-bsd.jar:
#16 8.920 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 9.034 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 9.039 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 9.067 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 9.068 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 9.071 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 9.071
#16 9.071 deps-formats-gpl:
#16 9.071
#16 9.071 jar-formats-gpl:
#16 9.169 [echo] isSnapshot = true
#16 9.341
#16 9.341 init-title:
#16 9.342 [echo] ----------=========== formats-gpl ===========----------
#16 9.342
#16 9.342 init-timestamp:
#16 9.342
#16 9.342 init:
#16 9.342
#16 9.342 copy-resources:
#16 9.342 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.344 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.345
#16 9.345 compile:
#16 9.809 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.08 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.12 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.15 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.16 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.17 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.19 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.21 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.22 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.27 [resolver:resolve] Resolving artifacts
#16 10.28 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.28 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.32 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.32 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.33 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.33 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.35 [javac] Compiling 174 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.46 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.46 [javac] import loci.formats.codec.BitWriter;
#16 11.46 [javac] ^
#16 11.46 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.46 [javac] import loci.formats.codec.BitWriter;
#16 11.46 [javac] ^
#16 13.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 13.06 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 13.06 [javac] ^
#16 13.06 [javac] cast to Object for a varargs call
#16 13.06 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 13.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.16 [javac] BitWriter bits = null;
#16 13.16 [javac] ^
#16 13.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.16 [javac] bits = new BitWriter(planes[index].length / 8);
#16 13.16 [javac] ^
#16 13.46 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 13.46 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 13.46 [javac] ^
#16 13.76 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.76 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 13.76 [javac] ^
#16 13.76 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.76 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 13.76 [javac] ^
#16 14.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 14.06 [javac] Variable variable = group.findVariable(variableName);
#16 14.06 [javac] ^
#16 14.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 14.06 [javac] Variable variable = group.findVariable(variableName);
#16 14.06 [javac] ^
#16 14.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 14.06 [javac] List<Attribute> attributes = variable.getAttributes();
#16 14.06 [javac] ^
#16 14.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.06 [javac] String groupName = group.getName();
#16 14.06 [javac] ^
#16 14.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 14.06 [javac] List<Attribute> attributes = group.getAttributes();
#16 14.06 [javac] ^
#16 14.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.06 [javac] String variableName = variable.getName();
#16 14.06 [javac] ^
#16 14.06 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 14.06 [javac] Group nextParent = parent.findGroup(token);
#16 14.06 [javac] ^
#16 14.06 [javac] Note: Some input files use unchecked or unsafe operations.
#16 14.06 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 14.06 [javac] 15 warnings
#16 14.23
#16 14.23 formats-gpl.jar:
#16 14.24 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 14.39 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 14.39 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 14.46 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 14.46 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 14.47 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 14.47
#16 14.47 deps-bio-formats-plugins:
#16 14.47
#16 14.47 jar-bio-formats-plugins:
#16 14.57 [echo] isSnapshot = true
#16 14.76
#16 14.76 init-title:
#16 14.76 [echo] ----------=========== bio-formats_plugins ===========----------
#16 14.76
#16 14.76 init-timestamp:
#16 14.76
#16 14.76 init:
#16 14.76
#16 14.76 copy-resources:
#16 14.76 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 14.76 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 14.77
#16 14.77 compile:
#16 15.02 [resolver:resolve] Resolving artifacts
#16 15.03 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.84 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.84 [javac] import loci.common.ReflectedUniverse;
#16 15.84 [javac] ^
#16 15.84 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.84 [javac] import loci.common.ReflectedUniverse;
#16 15.84 [javac] ^
#16 16.34 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 16.34 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 16.34 [javac] ^
#16 16.44 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.44 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 16.44 [javac] ^
#16 16.44 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.44 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 16.44 [javac] ^
#16 16.54 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.54 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 16.54 [javac] ^
#16 16.54 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.54 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 16.54 [javac] ^
#16 16.81 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 16.81 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.81 [javac] 7 warnings
#16 16.81
#16 16.81 bio-formats-plugins.jar:
#16 16.82 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 16.85 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 16.85 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 16.87 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 16.87 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 16.87 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 16.87
#16 16.87 deps-bio-formats-tools:
#16 16.87
#16 16.87 jar-bio-formats-tools:
#16 16.97 [echo] isSnapshot = true
#16 17.14
#16 17.14 init-title:
#16 17.14 [echo] ----------=========== bio-formats-tools ===========----------
#16 17.14
#16 17.14 init-timestamp:
#16 17.14
#16 17.14 init:
#16 17.14
#16 17.14 copy-resources:
#16 17.15 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 17.15
#16 17.15 compile:
#16 17.39 [resolver:resolve] Resolving artifacts
#16 17.40 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.41
#16 18.41 bio-formats-tools.jar:
#16 18.42 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 18.42 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 18.43 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 18.45 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 18.45 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 18.45 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 18.45
#16 18.45 deps-tests:
#16 18.45
#16 18.45 jar-tests:
#16 18.54 [echo] isSnapshot = true
#16 18.71
#16 18.71 init-title:
#16 18.71 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 18.71
#16 18.71 init-timestamp:
#16 18.71
#16 18.71 init:
#16 18.71
#16 18.71 copy-resources:
#16 18.71 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 18.71
#16 18.71 compile:
#16 19.02 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.10 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.11 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.74 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.19 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 20.23 [resolver:resolve] Resolving artifacts
#16 20.24 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.28 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.29 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.69 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.05 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 21.06 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.87 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 21.87 [javac] int index = unflattenedReader.getCoreIndex();
#16 21.87 [javac] ^
#16 21.87 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 21.87 [javac] reader.setCoreIndex(index);
#16 21.87 [javac] ^
#16 22.17 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2259: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.17 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 22.17 [javac] ^
#16 22.17 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2425: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.17 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 22.17 [javac] ^
#16 22.37 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 22.37 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 22.37 [javac] ^
#16 22.37 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 22.37 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 22.37 [javac] ^
#16 22.37 [javac] Note: Some input files use unchecked or unsafe operations.
#16 22.37 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 22.37 [javac] 6 warnings
#16 22.39
#16 22.39 tests.jar:
#16 22.39 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 22.41 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 22.41 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 22.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 22.43 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 22.44 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 22.44
#16 22.44 jars:
#16 22.44
#16 22.44 copy-jars:
#16 22.44
#16 22.44 deps-formats-api:
#16 22.49 [echo] isSnapshot = true
#16 22.53
#16 22.53 install-pom:
#16 22.70 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 22.70 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 22.70 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 22.70
#16 22.70 jar-formats-api:
#16 22.79 [echo] isSnapshot = true
#16 22.98
#16 22.98 init-title:
#16 22.98 [echo] ----------=========== formats-api ===========----------
#16 22.98
#16 22.98 init-timestamp:
#16 22.98
#16 22.98 init:
#16 22.98
#16 22.98 copy-resources:
#16 22.98
#16 22.98 compile:
#16 23.12 [resolver:resolve] Resolving artifacts
#16 23.13
#16 23.13 formats-api.jar:
#16 23.15 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 23.16 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 23.16 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 23.16 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 23.16 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 23.16
#16 23.16 deps-turbojpeg:
#16 23.16
#16 23.16 jar-turbojpeg:
#16 23.44 [echo] isSnapshot = true
#16 23.60
#16 23.60 init-title:
#16 23.60 [echo] ----------=========== turbojpeg ===========----------
#16 23.60
#16 23.60 init-timestamp:
#16 23.60
#16 23.60 init:
#16 23.60
#16 23.60 copy-resources:
#16 23.60
#16 23.60 compile:
#16 23.61 [resolver:resolve] Resolving artifacts
#16 23.62
#16 23.62 jar:
#16 23.62 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 23.63 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 23.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 23.63 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 23.64 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 23.64
#16 23.64 deps-formats-bsd:
#16 23.64
#16 23.64 jar-formats-bsd:
#16 23.73 [echo] isSnapshot = true
#16 23.89
#16 23.89 init-title:
#16 23.89 [echo] ----------=========== formats-bsd ===========----------
#16 23.89
#16 23.89 init-timestamp:
#16 23.89
#16 23.89 init:
#16 23.89
#16 23.89 copy-resources:
#16 23.90
#16 23.90 compile:
#16 24.09 [resolver:resolve] Resolving artifacts
#16 24.11
#16 24.11 formats-bsd.jar:
#16 24.14 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 24.14 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 24.15 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 24.15 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.15 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 24.15
#16 24.15 deps-formats-gpl:
#16 24.15
#16 24.15 jar-formats-gpl:
#16 24.24 [echo] isSnapshot = true
#16 24.40
#16 24.40 init-title:
#16 24.40 [echo] ----------=========== formats-gpl ===========----------
#16 24.40
#16 24.40 init-timestamp:
#16 24.40
#16 24.40 init:
#16 24.40
#16 24.40 copy-resources:
#16 24.41
#16 24.41 compile:
#16 24.63 [resolver:resolve] Resolving artifacts
#16 24.65
#16 24.65 formats-gpl.jar:
#16 24.69 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 24.69 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 24.69 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 24.69 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.69 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 24.70
#16 24.70 deps-bio-formats-plugins:
#16 24.70
#16 24.70 jar-bio-formats-plugins:
#16 24.78 [echo] isSnapshot = true
#16 24.95
#16 24.95 init-title:
#16 24.95 [echo] ----------=========== bio-formats_plugins ===========----------
#16 24.95
#16 24.95 init-timestamp:
#16 24.95
#16 24.95 init:
#16 24.95
#16 24.95 copy-resources:
#16 24.95
#16 24.95 compile:
#16 25.19 [resolver:resolve] Resolving artifacts
#16 25.21
#16 25.21 bio-formats-plugins.jar:
#16 25.22 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 25.22 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 25.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 25.22 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.23 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 25.23
#16 25.23 deps-bio-formats-tools:
#16 25.23
#16 25.23 jar-bio-formats-tools:
#16 25.32 [echo] isSnapshot = true
#16 25.48
#16 25.48 init-title:
#16 25.48 [echo] ----------=========== bio-formats-tools ===========----------
#16 25.48
#16 25.48 init-timestamp:
#16 25.49
#16 25.49 init:
#16 25.49
#16 25.49 copy-resources:
#16 25.49
#16 25.49 compile:
#16 25.75 [resolver:resolve] Resolving artifacts
#16 25.78
#16 25.78 bio-formats-tools.jar:
#16 25.79 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 25.79 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 25.80 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 25.80 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.80 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 25.80
#16 25.80 deps-tests:
#16 25.80
#16 25.80 jar-tests:
#16 25.89 [echo] isSnapshot = true
#16 26.08
#16 26.08 init-title:
#16 26.08 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 26.08
#16 26.08 init-timestamp:
#16 26.08
#16 26.08 init:
#16 26.08
#16 26.08 copy-resources:
#16 26.08
#16 26.08 compile:
#16 26.34 [resolver:resolve] Resolving artifacts
#16 26.36
#16 26.36 tests.jar:
#16 26.36 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 26.37 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 26.37 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 26.37 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.37 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.38
#16 26.38 jars:
#16 26.38
#16 26.38 tools:
#16 26.38 [echo] ----------=========== bioformats_package ===========----------
#16 26.48 [echo] isSnapshot = true
#16 26.66
#16 26.66 init-timestamp:
#16 26.66
#16 26.66 bundle:
#16 26.95 [resolver:resolve] Resolving artifacts
#16 26.96 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.00 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.25-SNAPSHOT/ome-common-6.0.25-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.02 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.04 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.05 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.12 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.14 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.19 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.20 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.44 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.50 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.52 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.58 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.59 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.60 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.60 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.78 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.29 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.30 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.30 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.31 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.39 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.40 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.40 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.47 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.52 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.54 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.1-SNAPSHOT/ome-codecs-1.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.55 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.70 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.77 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.81 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.82 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.86 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.88 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.39 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.42 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.45 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.52 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.63 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.64 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.66 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.67 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.91 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.98 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.03 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.13 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.15 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.15 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.28 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.28 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.76 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.77 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.89 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.94 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.95 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.96 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.02 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.05 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.22 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.23 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.24 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.25 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.26 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.29 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.69 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.80 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.20 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 38.11 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.76 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 38.76 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 38.79 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 38.83 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 38.84 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 38.85
#16 38.85 BUILD SUCCESSFUL
#16 38.85 Total time: 38 seconds
#16 DONE 39.1s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.4s done
#18 writing image sha256:cc9dba45234da96b933ea1cf3afc2e6e932dfe5c015ed9228574f1ab25ae7c24 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci 0.0s done
#18 DONE 3.4s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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