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Full Log#14 346.3 Progress (4): 402/435 kB | 220/290 kB | 154/154 kB | 33/632 kB
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#14 346.3 Progress (4): 435 kB | 290 kB | 332/632 kB | 4.1/195 kB
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#14 346.3 Progress (4): 435 kB | 290 kB | 336/632 kB | 12/195 kB
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#14 346.3 Progress (3): 290 kB | 369/632 kB | 49/195 kB
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#14 346.3 Progress (2): 393/632 kB | 70/195 kB
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#14 346.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-sink-api/1.0/doxia-sink-api-1.0.jar
#14 346.3 Progress (4): 632 kB | 76 kB | 37 kB | 123/263 kB
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#14 346.3 Progress (3): 76 kB | 37 kB | 197/263 kB
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#14 346.3 Progress (3): 76 kB | 37 kB | 201/263 kB
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#14 346.3 Progress (2): 37 kB | 250/263 kB
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#14 346.3 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-velocity/1.1.7/plexus-velocity-1.1.7.jar
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#14 346.3 Progress (2): 7.7 kB | 16/392 kB
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#14 346.4 Progress (4): 392 kB | 208 kB | 160/571 kB | 47 kB
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#14 346.4 Progress (3): 392 kB | 291/571 kB | 47 kB
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#14 346.4 Progress (2): 392 kB | 344/571 kB
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#14 346.9 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.3.1/plexus-utils-3.3.1.jar (262 kB at 6.1 MB/s)
#14 346.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.13.0/maven-scm-manager-plexus-1.13.0.pom
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#14 346.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-managers/1.13.0/maven-scm-managers-1.13.0.pom
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#14 347.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-managers/1.3/maven-scm-managers-1.3.pom
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#14 347.2 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-container-default/1.5.4/plexus-container-default-1.5.4.pom
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#14 347.2 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.2.2/plexus-classworlds-2.2.2.pom
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#14 347.2 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus/2.0.3/plexus-2.0.3.pom
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#14 347.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/xbean/xbean-reflect/3.4/xbean-reflect-3.4.pom
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#14 347.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/xbean/xbean/3.4/xbean-3.4.pom
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#14 347.3 Downloading from central: https://repo.maven.apache.org/maven2/com/google/collections/google-collections/1.0/google-collections-1.0.pom
#14 347.3 Progress (1): 2.5 kB
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#14 347.3 Downloading from central: https://repo.maven.apache.org/maven2/com/google/google/1/google-1.pom
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#14 347.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers-git/1.3/maven-scm-providers-git-1.3.pom
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#14 347.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers/1.3/maven-scm-providers-1.3.pom
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#14 347.5 Downloading from central: https://repo.maven.apache.org/maven2/org/kathrynhuxtable/maven/wagon/wagon-gitsite/0.3.1/wagon-gitsite-0.3.1.jar
#14 347.5 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/1.5.8/plexus-utils-1.5.8.jar
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#14 347.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.3/maven-scm-manager-plexus-1.3.jar
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#14 347.5 [output clipped, log limit 2MiB reached]
#14 452.5 SLF4J: No SLF4J providers were found.
#14 452.5 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 452.5 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 460.3s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.908 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.337 [echo] isSnapshot = true
#16 1.446
#16 1.446 copy-jars:
#16 1.447
#16 1.447 deps-formats-api:
#16 1.530 [echo] isSnapshot = true
#16 1.586
#16 1.586 install-pom:
#16 1.769 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/pom-bio-formats-8.2.0-SNAPSHOT.pom
#16 1.777 [resolver:install] Installing ome:pom-bio-formats:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 1.781 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.783
#16 1.783 jar-formats-api:
#16 1.896 [echo] isSnapshot = true
#16 2.178
#16 2.178 init-title:
#16 2.179 [echo] ----------=========== formats-api ===========----------
#16 2.179
#16 2.179 init-timestamp:
#16 2.184
#16 2.184 init:
#16 2.184
#16 2.184 copy-resources:
#16 2.185 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.199 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.201
#16 2.201 compile:
#16 2.384 [resolver:resolve] Resolving artifacts
#16 2.412 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.625 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.225 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.225 [javac] import loci.common.ReflectedUniverse;
#16 3.225 [javac] ^
#16 3.526 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.526 [javac] int currentIndex = r.getCoreIndex();
#16 3.526 [javac] ^
#16 3.526 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.526 [javac] r.setCoreIndex(coreIndex);
#16 3.526 [javac] ^
#16 3.526 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.526 [javac] r.setCoreIndex(currentIndex);
#16 3.527 [javac] ^
#16 3.627 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.627 [javac] public void setCoreIndex(int no) {
#16 3.627 [javac] ^
#16 3.627 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.627 [javac] public int getCoreIndex() {
#16 3.627 [javac] ^
#16 3.627 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.627 [javac] public int coreIndexToSeries(int index)
#16 3.627 [javac] ^
#16 3.628 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.628 [javac] public int seriesToCoreIndex(int series)
#16 3.628 [javac] ^
#16 3.628 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.628 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.628 [javac] ^
#16 3.728 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.728 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.728 [javac] ^
#16 3.728 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.728 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.729 [javac] ^
#16 3.729 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.729 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.729 [javac] ^
#16 3.729 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.729 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.729 [javac] ^
#16 3.829 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.829 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.829 [javac] ^
#16 3.829 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.829 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.829 [javac] ^
#16 3.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.830 [javac] public void setCoreIndex(int no) {
#16 3.830 [javac] ^
#16 3.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.830 [javac] public int getCoreIndex() {
#16 3.830 [javac] ^
#16 3.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.830 [javac] public int coreIndexToSeries(int index) {
#16 3.830 [javac] ^
#16 3.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.830 [javac] public int seriesToCoreIndex(int series) {
#16 3.830 [javac] ^
#16 3.830 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.830 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.830 [javac] ^
#16 3.931 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.931 [javac] return getReader().getCoreMetadataList();
#16 3.931 [javac] ^
#16 3.931 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.931 [javac] return getReader().getCoreIndex();
#16 3.931 [javac] ^
#16 3.931 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.931 [javac] getReader().setCoreIndex(no);
#16 3.931 [javac] ^
#16 3.931 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.931 [javac] return getReader().seriesToCoreIndex(series);
#16 3.931 [javac] ^
#16 3.931 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.931 [javac] return getReader().coreIndexToSeries(index);
#16 3.931 [javac] ^
#16 3.931 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.931 [javac] public void setCoreIndex(int no) {
#16 3.931 [javac] ^
#16 3.931 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.931 [javac] public int getCoreIndex() {
#16 3.932 [javac] ^
#16 3.932 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.932 [javac] public int coreIndexToSeries(int index) {
#16 3.932 [javac] ^
#16 3.932 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.932 [javac] public int seriesToCoreIndex(int series) {
#16 3.932 [javac] ^
#16 3.932 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.932 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.932 [javac] ^
#16 3.932 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.932 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.932 [javac] ^
#16 3.932 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.932 [javac] return reader.getCoreIndex();
#16 3.932 [javac] ^
#16 3.932 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.932 [javac] reader.setCoreIndex(no);
#16 3.932 [javac] ^
#16 3.932 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.932 [javac] return reader.seriesToCoreIndex(series);
#16 3.932 [javac] ^
#16 3.932 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.933 [javac] return reader.coreIndexToSeries(index);
#16 3.933 [javac] ^
#16 4.133 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.133 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.133 [javac] 36 warnings
#16 4.151
#16 4.151 formats-api.jar:
#16 4.151 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.175 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.206 [resolver:install] Using default POM (ome:formats-api:8.2.0-SNAPSHOT)
#16 4.210 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.pom
#16 4.212 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar
#16 4.213 [resolver:install] Installing ome:formats-api:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 4.216 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.216
#16 4.216 deps-turbojpeg:
#16 4.217
#16 4.217 jar-turbojpeg:
#16 4.317 [echo] isSnapshot = true
#16 4.488
#16 4.488 init-title:
#16 4.488 [echo] ----------=========== turbojpeg ===========----------
#16 4.488
#16 4.488 init-timestamp:
#16 4.489
#16 4.489 init:
#16 4.489
#16 4.489 copy-resources:
#16 4.489 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.490
#16 4.490 compile:
#16 4.500 [resolver:resolve] Resolving artifacts
#16 4.504 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.706 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.307 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 5.307 [javac] protected void finalize() throws Throwable {
#16 5.307 [javac] ^
#16 5.307 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 5.307 [javac] super.finalize();
#16 5.307 [javac] ^
#16 5.307 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 5.307 [javac] protected void finalize() throws Throwable {
#16 5.307 [javac] ^
#16 5.307 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 5.307 [javac] super.finalize();
#16 5.307 [javac] ^
#16 5.307 [javac] 5 warnings
#16 5.368
#16 5.368 jar:
#16 5.373 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 5.562 [resolver:install] Using default POM (ome:turbojpeg:8.2.0-SNAPSHOT)
#16 5.569 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.pom
#16 5.571 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar
#16 5.573 [resolver:install] Installing ome:turbojpeg:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 5.577 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 5.578
#16 5.578 deps-formats-bsd:
#16 5.578
#16 5.578 jar-formats-bsd:
#16 5.679 [echo] isSnapshot = true
#16 5.834
#16 5.834 init-title:
#16 5.834 [echo] ----------=========== formats-bsd ===========----------
#16 5.834
#16 5.834 init-timestamp:
#16 5.834
#16 5.834 init:
#16 5.834
#16 5.834 copy-resources:
#16 5.835 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.838 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.839
#16 5.839 compile:
#16 6.056 [resolver:resolve] Resolving artifacts
#16 6.084 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.393 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.393 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.393 [javac] import loci.common.ReflectedUniverse;
#16 7.393 [javac] ^
#16 7.694 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.694 [javac] core.size() != reader.getCoreMetadataList().size())
#16 7.694 [javac] ^
#16 7.694 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.694 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 7.694 [javac] ^
#16 7.794 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.794 [javac] int n = reader.getCoreMetadataList().size();
#16 7.794 [javac] ^
#16 7.794 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.794 [javac] reader.setCoreIndex(coreIndex);
#16 7.794 [javac] ^
#16 7.794 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.794 [javac] int n = reader.getCoreMetadataList().size();
#16 7.794 [javac] ^
#16 7.794 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.794 [javac] int n = reader.getCoreMetadataList().size();
#16 7.794 [javac] ^
#16 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 7.795 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 7.795 [javac] ^
#16 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.795 [javac] int n = reader.getCoreMetadataList().size();
#16 7.795 [javac] ^
#16 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 7.795 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 7.795 [javac] ^
#16 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.795 [javac] int n = reader.getCoreMetadataList().size();
#16 7.795 [javac] ^
#16 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.795 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 7.795 [javac] ^
#16 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.795 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.795 [javac] ^
#16 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.795 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.795 [javac] ^
#16 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.795 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 7.795 [javac] ^
#16 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.795 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 7.795 [javac] ^
#16 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.795 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 7.795 [javac] ^
#16 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.795 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 7.795 [javac] ^
#16 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.795 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 7.795 [javac] ^
#16 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.795 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 7.795 [javac] ^
#16 7.896 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.896 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.896 [javac] ^
#16 7.996 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.996 [javac] BitWriter out = new BitWriter();
#16 7.996 [javac] ^
#16 7.996 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.996 [javac] BitWriter out = new BitWriter();
#16 7.996 [javac] ^
#16 8.096 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [deprecation] Double(String) in Double has been deprecated
#16 8.096 [javac] return new Double(v);
#16 8.096 [javac] ^
#16 8.697 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [deprecation] Double(String) in Double has been deprecated
#16 8.697 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 8.697 [javac] ^
#16 8.697 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [deprecation] Double(String) in Double has been deprecated
#16 8.697 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 8.697 [javac] ^
#16 8.697 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [deprecation] Double(double) in Double has been deprecated
#16 8.697 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 8.697 [javac] ^
#16 8.798 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 8.798 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 8.798 [javac] ^
#16 8.998 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.998 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 8.998 [javac] ^
#16 9.098 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.098 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.098 [javac] ^
#16 9.198 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.199 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.199 [javac] ^
#16 9.199 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.199 [javac] protected ReflectedUniverse r;
#16 9.199 [javac] ^
#16 9.199 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.199 [javac] r = new ReflectedUniverse();
#16 9.199 [javac] ^
#16 9.199 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 9.199 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.199 [javac] ^
#16 9.199 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.199 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.199 [javac] ^
#16 9.199 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 9.199 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.199 [javac] ^
#16 9.199 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 9.199 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.199 [javac] ^
#16 9.199 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 9.199 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.199 [javac] ^
#16 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 9.200 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.200 [javac] ^
#16 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 9.200 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.200 [javac] ^
#16 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 9.200 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.200 [javac] ^
#16 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 9.200 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.200 [javac] ^
#16 9.300 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 9.300 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.300 [javac] ^
#16 9.300 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Long(long) in Long has been deprecated
#16 9.300 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.300 [javac] ^
#16 9.300 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 9.300 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.300 [javac] ^
#16 9.300 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Long(long) in Long has been deprecated
#16 9.300 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.300 [javac] ^
#16 9.400 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 9.400 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 9.400 [javac] ^
#16 9.400 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [deprecation] Double(double) in Double has been deprecated
#16 9.400 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 9.400 [javac] ^
#16 9.400 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [deprecation] Double(double) in Double has been deprecated
#16 9.400 [javac] result[i] = new Double(readNumber().doubleValue());
#16 9.400 [javac] ^
#16 9.400 [javac] Note: Some input files use unchecked or unsafe operations.
#16 9.401 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 9.401 [javac] 50 warnings
#16 9.416
#16 9.416 formats-bsd.jar:
#16 9.425 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 9.534 [resolver:install] Using default POM (ome:formats-bsd:8.2.0-SNAPSHOT)
#16 9.538 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.pom
#16 9.544 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar
#16 9.546 [resolver:install] Installing ome:formats-bsd:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 9.548 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 9.549
#16 9.549 deps-formats-gpl:
#16 9.549
#16 9.549 jar-formats-gpl:
#16 9.642 [echo] isSnapshot = true
#16 9.798
#16 9.798 init-title:
#16 9.798 [echo] ----------=========== formats-gpl ===========----------
#16 9.798
#16 9.798 init-timestamp:
#16 9.798
#16 9.798 init:
#16 9.798
#16 9.798 copy-resources:
#16 9.798 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.800 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.801
#16 9.801 compile:
#16 10.21 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.45 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.48 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.49 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.50 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.51 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.56 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.58 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.58 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.64 [resolver:resolve] Resolving artifacts
#16 10.64 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.64 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.69 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.69 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.70 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.70 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.72 [javac] Compiling 175 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.03 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 12.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.13 [javac] import loci.formats.codec.BitWriter;
#16 12.13 [javac] ^
#16 12.23 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.23 [javac] import loci.formats.codec.BitWriter;
#16 12.23 [javac] ^
#16 14.23 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 14.23 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 14.23 [javac] ^
#16 14.23 [javac] cast to Object for a varargs call
#16 14.23 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 14.23 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.23 [javac] BitWriter bits = null;
#16 14.23 [javac] ^
#16 14.23 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.23 [javac] bits = new BitWriter(planes[index].length / 8);
#16 14.23 [javac] ^
#16 14.63 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 14.63 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 14.63 [javac] ^
#16 15.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.13 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.13 [javac] ^
#16 15.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.13 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.13 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.43 [javac] Variable variable = group.findVariable(variableName);
#16 15.43 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.43 [javac] Variable variable = group.findVariable(variableName);
#16 15.43 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 15.43 [javac] List<Attribute> attributes = variable.getAttributes();
#16 15.43 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.43 [javac] String groupName = group.getName();
#16 15.43 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 15.43 [javac] List<Attribute> attributes = group.getAttributes();
#16 15.43 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.43 [javac] String variableName = variable.getName();
#16 15.43 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 15.43 [javac] Group nextParent = parent.findGroup(token);
#16 15.43 [javac] ^
#16 15.43 [javac] Note: Some input files use unchecked or unsafe operations.
#16 15.43 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 15.43 [javac] 16 warnings
#16 15.44
#16 15.44 formats-gpl.jar:
#16 15.45 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 15.58 [resolver:install] Using default POM (ome:formats-gpl:8.2.0-SNAPSHOT)
#16 15.59 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.pom
#16 15.59 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar
#16 15.59 [resolver:install] Installing ome:formats-gpl:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 15.59 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 15.60
#16 15.60 deps-bio-formats-plugins:
#16 15.60
#16 15.60 jar-bio-formats-plugins:
#16 15.69 [echo] isSnapshot = true
#16 15.85
#16 15.85 init-title:
#16 15.85 [echo] ----------=========== bio-formats_plugins ===========----------
#16 15.85
#16 15.85 init-timestamp:
#16 15.85
#16 15.85 init:
#16 15.85
#16 15.85 copy-resources:
#16 15.85 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.85 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.85
#16 15.85 compile:
#16 16.11 [resolver:resolve] Resolving artifacts
#16 16.12 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.43 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 17.23 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.23 [javac] import loci.common.ReflectedUniverse;
#16 17.23 [javac] ^
#16 17.23 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.23 [javac] import loci.common.ReflectedUniverse;
#16 17.23 [javac] ^
#16 17.63 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 17.63 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 17.63 [javac] ^
#16 17.73 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.73 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.73 [javac] ^
#16 17.73 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.73 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 17.73 [javac] ^
#16 17.83 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.83 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.83 [javac] ^
#16 17.83 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.83 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.83 [javac] ^
#16 18.23 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 18.23 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.23 [javac] 8 warnings
#16 18.24
#16 18.24 bio-formats-plugins.jar:
#16 18.25 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 18.27 [resolver:install] Using default POM (ome:bio-formats_plugins:8.2.0-SNAPSHOT)
#16 18.28 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.pom
#16 18.28 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar
#16 18.29 [resolver:install] Installing ome:bio-formats_plugins:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 18.29 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 18.29
#16 18.29 deps-bio-formats-tools:
#16 18.29
#16 18.29 jar-bio-formats-tools:
#16 18.38 [echo] isSnapshot = true
#16 18.53
#16 18.53 init-title:
#16 18.53 [echo] ----------=========== bio-formats-tools ===========----------
#16 18.53
#16 18.53 init-timestamp:
#16 18.53
#16 18.53 init:
#16 18.53
#16 18.53 copy-resources:
#16 18.53 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.53
#16 18.53 compile:
#16 18.78 [resolver:resolve] Resolving artifacts
#16 18.79 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.99 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.99 [javac] 1 warning
#16 20.03
#16 20.03 bio-formats-tools.jar:
#16 20.03 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.04 [resolver:install] Using default POM (ome:bio-formats-tools:8.2.0-SNAPSHOT)
#16 20.04 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.pom
#16 20.05 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar
#16 20.05 [resolver:install] Installing ome:bio-formats-tools:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 20.05 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.05
#16 20.05 deps-tests:
#16 20.05
#16 20.05 jar-tests:
#16 20.14 [echo] isSnapshot = true
#16 20.29
#16 20.29 init-title:
#16 20.29 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 20.29
#16 20.29 init-timestamp:
#16 20.29
#16 20.29 init:
#16 20.29
#16 20.29 copy-resources:
#16 20.29 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 20.29
#16 20.29 compile:
#16 20.60 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 20.68 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 20.69 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.11 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.54 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 21.56 [resolver:resolve] Resolving artifacts
#16 21.57 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 21.61 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 21.62 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.03 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.38 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 22.39 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.70 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 23.60 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 23.60 [javac] int index = unflattenedReader.getCoreIndex();
#16 23.60 [javac] ^
#16 23.60 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 23.60 [javac] reader.setCoreIndex(index);
#16 23.60 [javac] ^
#16 23.80 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2257: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 23.80 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 23.80 [javac] ^
#16 23.80 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2423: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 23.80 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 23.80 [javac] ^
#16 24.10 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.10 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 24.10 [javac] ^
#16 24.10 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.10 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 24.10 [javac] ^
#16 24.10 [javac] Note: Some input files use unchecked or unsafe operations.
#16 24.10 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 24.10 [javac] 7 warnings
#16 24.11
#16 24.11 tests.jar:
#16 24.11 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 24.12 [resolver:install] Using default POM (ome:test-suite:8.2.0-SNAPSHOT)
#16 24.13 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.pom
#16 24.13 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.jar
#16 24.13 [resolver:install] Installing ome:test-suite:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 24.13 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.13
#16 24.13 jars:
#16 24.13
#16 24.13 copy-jars:
#16 24.13
#16 24.13 deps-formats-api:
#16 24.18 [echo] isSnapshot = true
#16 24.22
#16 24.22 install-pom:
#16 24.37 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/pom-bio-formats-8.2.0-SNAPSHOT.pom
#16 24.37 [resolver:install] Installing ome:pom-bio-formats:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 24.38 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 24.38
#16 24.38 jar-formats-api:
#16 24.47 [echo] isSnapshot = true
#16 24.65
#16 24.65 init-title:
#16 24.65 [echo] ----------=========== formats-api ===========----------
#16 24.65
#16 24.65 init-timestamp:
#16 24.66
#16 24.66 init:
#16 24.66
#16 24.66 copy-resources:
#16 24.66
#16 24.66 compile:
#16 24.80 [resolver:resolve] Resolving artifacts
#16 24.81
#16 24.81 formats-api.jar:
#16 24.82 [resolver:install] Using default POM (ome:formats-api:8.2.0-SNAPSHOT)
#16 24.83 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.pom
#16 24.83 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar
#16 24.83 [resolver:install] Installing ome:formats-api:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 24.83 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 24.83
#16 24.83 deps-turbojpeg:
#16 24.83
#16 24.83 jar-turbojpeg:
#16 24.92 [echo] isSnapshot = true
#16 25.07
#16 25.07 init-title:
#16 25.07 [echo] ----------=========== turbojpeg ===========----------
#16 25.07
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#16 25.08 [resolver:resolve] Resolving artifacts
#16 25.08
#16 25.08 jar:
#16 25.09 [resolver:install] Using default POM (ome:turbojpeg:8.2.0-SNAPSHOT)
#16 25.09 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.pom
#16 25.09 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar
#16 25.10 [resolver:install] Installing ome:turbojpeg:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 25.10 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.10
#16 25.10 deps-formats-bsd:
#16 25.10
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#16 25.19 [echo] isSnapshot = true
#16 25.34
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#16 25.34 [echo] ----------=========== formats-bsd ===========----------
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#16 25.53 [resolver:resolve] Resolving artifacts
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#16 25.54 formats-bsd.jar:
#16 25.58 [resolver:install] Using default POM (ome:formats-bsd:8.2.0-SNAPSHOT)
#16 25.58 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.pom
#16 25.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar
#16 25.58 [resolver:install] Installing ome:formats-bsd:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 25.59 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 25.59
#16 25.59 deps-formats-gpl:
#16 25.59
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#16 25.81 [echo] ----------=========== formats-gpl ===========----------
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#16 26.06 formats-gpl.jar:
#16 26.10 [resolver:install] Using default POM (ome:formats-gpl:8.2.0-SNAPSHOT)
#16 26.10 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.pom
#16 26.10 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar
#16 26.11 [resolver:install] Installing ome:formats-gpl:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 26.11 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.11
#16 26.11 deps-bio-formats-plugins:
#16 26.11
#16 26.11 jar-bio-formats-plugins:
#16 26.19 [echo] isSnapshot = true
#16 26.34
#16 26.34 init-title:
#16 26.34 [echo] ----------=========== bio-formats_plugins ===========----------
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#16 26.59 bio-formats-plugins.jar:
#16 26.60 [resolver:install] Using default POM (ome:bio-formats_plugins:8.2.0-SNAPSHOT)
#16 26.61 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.pom
#16 26.61 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar
#16 26.61 [resolver:install] Installing ome:bio-formats_plugins:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 26.61 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 26.61
#16 26.61 deps-bio-formats-tools:
#16 26.61
#16 26.61 jar-bio-formats-tools:
#16 26.70 [echo] isSnapshot = true
#16 26.84
#16 26.84 init-title:
#16 26.84 [echo] ----------=========== bio-formats-tools ===========----------
#16 26.84
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#16 26.85
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#16 27.09
#16 27.09 bio-formats-tools.jar:
#16 27.10 [resolver:install] Using default POM (ome:bio-formats-tools:8.2.0-SNAPSHOT)
#16 27.10 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.pom
#16 27.10 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar
#16 27.10 [resolver:install] Installing ome:bio-formats-tools:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 27.11 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.11
#16 27.11 deps-tests:
#16 27.11
#16 27.11 jar-tests:
#16 27.19 [echo] isSnapshot = true
#16 27.34
#16 27.34 init-title:
#16 27.34 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 27.34
#16 27.34 init-timestamp:
#16 27.34
#16 27.34 init:
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#16 27.34
#16 27.34 compile:
#16 27.59 [resolver:resolve] Resolving artifacts
#16 27.60
#16 27.60 tests.jar:
#16 27.61 [resolver:install] Using default POM (ome:test-suite:8.2.0-SNAPSHOT)
#16 27.61 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.pom
#16 27.61 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.jar
#16 27.61 [resolver:install] Installing ome:test-suite:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 27.61 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 27.62
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#16 27.62
#16 27.62 tools:
#16 27.62 [echo] ----------=========== bioformats_package ===========----------
#16 27.70 [echo] isSnapshot = true
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#16 27.85
#16 27.85 bundle:
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#16 28.10 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.13 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.26-SNAPSHOT/ome-common-6.0.26-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.16 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.18 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.19 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.25 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.27 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.32 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.33 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.56 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.62 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.63 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.69 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.70 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.72 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.72 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.89 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.39 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.39 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.39 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.40 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 29.49 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.50 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.0-SNAPSHOT/ome-xml-6.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.56 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.0-SNAPSHOT/specification-6.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.61 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.63 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.1-SNAPSHOT/ome-codecs-1.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.64 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.78 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.86 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.89 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.90 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 29.96 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.40 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.42 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 30.52 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.63 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 30.67 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 31.04 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.13 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 31.95 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.96 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.97 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.03 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.06 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.22 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.24 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.25 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.26 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.26 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.29 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.69 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.81 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.22 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 38.92 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.50 [resolver:install] Using default POM (ome:bioformats_package:8.2.0-SNAPSHOT)
#16 39.50 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/bioformats_package-8.2.0-SNAPSHOT.pom
#16 39.51 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/bioformats_package-8.2.0-SNAPSHOT.jar
#16 39.54 [resolver:install] Installing ome:bioformats_package:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 39.54 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 39.55
#16 39.55 BUILD SUCCESSFUL
#16 39.55 Total time: 38 seconds
#16 DONE 43.6s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.5s done
#18 writing image sha256:1d3e620e2683205813f0a9f03b15a4f5c83ae685129096d094687666420e7264 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.5s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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