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#15 459.4 Progress (4): 2.3/3.0 MB | 1.1/1.6 MB | 557/862 kB | 49/855 kB
Progress (4): 2.3/3.0 MB | 1.1/1.6 MB | 565/862 kB | 49/855 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/core5/httpcore5-h2/5.2.4/httpcore5-h2-5.2.4.jar
#15 459.4 Progress (4): 2.3/3.0 MB | 1.1/1.6 MB | 565/862 kB | 49/855 kB
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#15 472.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.6/maven-model-2.0.6.jar (86 kB at 665 kB/s)
#15 472.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.6/maven-plugin-parameter-documenter-2.0.6.jar
#15 472.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.6/maven-reporting-api-2.0.6.jar
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#15 472.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.6/maven-error-diagnostics-2.0.6.jar
#15 472.7 Progress (2): 24 kB | 81/152 kB
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#15 472.7 [output clipped, log limit 2MiB reached]
#15 504.3 WARNING: A restricted method in java.lang.System has been called
#15 504.3 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 504.3 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 504.3 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 504.3
#15 548.1 SLF4J: No SLF4J providers were found.
#15 548.1 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 548.1 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 548.3 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 548.3 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 548.3 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 548.3 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 557.7s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.1s
#17 [13/14] RUN ant jars tools
#17 0.331 Buildfile: /bio-formats-build/bioformats/build.xml
#17 0.722 [echo] isSnapshot = true
#17 0.829
#17 0.829 copy-jars:
#17 0.829
#17 0.829 deps-formats-api:
#17 0.912 [echo] isSnapshot = true
#17 0.967
#17 0.967 install-pom:
#17 1.149 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/pom-bio-formats-8.5.0-SNAPSHOT.pom
#17 1.161 [resolver:install] Installing ome:pom-bio-formats:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 1.165 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 1.166
#17 1.166 jar-formats-api:
#17 1.274 [echo] isSnapshot = true
#17 1.452
#17 1.452 init-title:
#17 1.452 [echo] ----------=========== formats-api ===========----------
#17 1.453
#17 1.453 init-timestamp:
#17 1.461
#17 1.461 init:
#17 1.461
#17 1.461 copy-resources:
#17 1.462 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.478 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.480
#17 1.480 compile:
#17 1.669 [resolver:resolve] Resolving artifacts
#17 1.698 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.910 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 1.910 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 1.910 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 1.910 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 1.910 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 1.911 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 2.611 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 2.611 [javac] import loci.common.ReflectedUniverse;
#17 2.611 [javac] ^
#17 2.812 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 2.812 [javac] int currentIndex = r.getCoreIndex();
#17 2.812 [javac] ^
#17 2.812 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 2.812 [javac] r.setCoreIndex(coreIndex);
#17 2.812 [javac] ^
#17 2.812 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 2.813 [javac] r.setCoreIndex(currentIndex);
#17 2.813 [javac] ^
#17 3.013 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.013 [javac] public void setCoreIndex(int no) {
#17 3.013 [javac] ^
#17 3.013 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.013 [javac] public int getCoreIndex() {
#17 3.013 [javac] ^
#17 3.014 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.014 [javac] public int coreIndexToSeries(int index)
#17 3.014 [javac] ^
#17 3.014 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.014 [javac] public int seriesToCoreIndex(int series)
#17 3.014 [javac] ^
#17 3.014 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.014 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.014 [javac] ^
#17 3.014 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.014 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 3.014 [javac] ^
#17 3.014 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.015 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 3.015 [javac] ^
#17 3.115 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.115 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 3.115 [javac] ^
#17 3.115 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.115 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 3.115 [javac] ^
#17 3.115 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 3.115 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 3.116 [javac] ^
#17 3.216 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.216 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.216 [javac] ^
#17 3.216 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.216 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.216 [javac] ^
#17 3.317 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.317 [javac] public void setCoreIndex(int no) {
#17 3.317 [javac] ^
#17 3.317 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.317 [javac] public int getCoreIndex() {
#17 3.317 [javac] ^
#17 3.317 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.317 [javac] public int coreIndexToSeries(int index) {
#17 3.317 [javac] ^
#17 3.317 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.318 [javac] public int seriesToCoreIndex(int series) {
#17 3.318 [javac] ^
#17 3.318 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.318 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.318 [javac] ^
#17 3.318 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.318 [javac] return getReader().getCoreMetadataList();
#17 3.318 [javac] ^
#17 3.318 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.318 [javac] return getReader().getCoreIndex();
#17 3.318 [javac] ^
#17 3.318 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.318 [javac] getReader().setCoreIndex(no);
#17 3.318 [javac] ^
#17 3.318 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.318 [javac] return getReader().seriesToCoreIndex(series);
#17 3.318 [javac] ^
#17 3.319 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.319 [javac] return getReader().coreIndexToSeries(index);
#17 3.319 [javac] ^
#17 3.319 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.319 [javac] public void setCoreIndex(int no) {
#17 3.319 [javac] ^
#17 3.319 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.319 [javac] public int getCoreIndex() {
#17 3.319 [javac] ^
#17 3.319 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.319 [javac] public int coreIndexToSeries(int index) {
#17 3.319 [javac] ^
#17 3.319 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.319 [javac] public int seriesToCoreIndex(int series) {
#17 3.319 [javac] ^
#17 3.319 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.319 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.319 [javac] ^
#17 3.319 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.319 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 3.320 [javac] ^
#17 3.320 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.320 [javac] return reader.getCoreIndex();
#17 3.320 [javac] ^
#17 3.320 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.320 [javac] reader.setCoreIndex(no);
#17 3.320 [javac] ^
#17 3.320 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.320 [javac] return reader.seriesToCoreIndex(series);
#17 3.320 [javac] ^
#17 3.320 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.321 [javac] return reader.coreIndexToSeries(index);
#17 3.321 [javac] ^
#17 3.521 [javac] Note: Some input files use unchecked or unsafe operations.
#17 3.521 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 3.521 [javac] 40 warnings
#17 3.532
#17 3.532 formats-api.jar:
#17 3.532 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 3.561 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 3.596 [resolver:install] Using default POM (ome:formats-api:8.5.0-SNAPSHOT)
#17 3.600 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.pom
#17 3.601 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.jar
#17 3.602 [resolver:install] Installing ome:formats-api:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 3.605 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 3.605
#17 3.605 deps-turbojpeg:
#17 3.605
#17 3.605 jar-turbojpeg:
#17 3.708 [echo] isSnapshot = true
#17 3.845
#17 3.845 init-title:
#17 3.845 [echo] ----------=========== turbojpeg ===========----------
#17 3.845
#17 3.845 init-timestamp:
#17 3.845
#17 3.845 init:
#17 3.845
#17 3.845 copy-resources:
#17 3.846 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 3.846
#17 3.846 compile:
#17 3.856 [resolver:resolve] Resolving artifacts
#17 3.859 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.061 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 4.061 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 4.061 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 4.061 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 4.061 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 4.061 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 4.817 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.817 [javac] protected void finalize() throws Throwable {
#17 4.817 [javac] ^
#17 4.817 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.817 [javac] super.finalize();
#17 4.817 [javac] ^
#17 4.817 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.817 [javac] protected void finalize() throws Throwable {
#17 4.817 [javac] ^
#17 4.817 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.817 [javac] super.finalize();
#17 4.817 [javac] ^
#17 4.817 [javac] 8 warnings
#17 4.817
#17 4.817 jar:
#17 4.821 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 5.007 [resolver:install] Using default POM (ome:turbojpeg:8.5.0-SNAPSHOT)
#17 5.015 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.pom
#17 5.017 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.jar
#17 5.019 [resolver:install] Installing ome:turbojpeg:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 5.023 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 5.024
#17 5.024 deps-formats-bsd:
#17 5.024
#17 5.024 jar-formats-bsd:
#17 5.155 [echo] isSnapshot = true
#17 5.298
#17 5.298 init-title:
#17 5.299 [echo] ----------=========== formats-bsd ===========----------
#17 5.299
#17 5.299 init-timestamp:
#17 5.299
#17 5.299 init:
#17 5.299
#17 5.299 copy-resources:
#17 5.299 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.302 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.303
#17 5.303 compile:
#17 5.530 [resolver:resolve] Resolving artifacts
#17 5.556 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.764 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 5.764 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 5.764 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 5.764 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 5.765 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 5.765 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 6.966 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 6.966 [javac] import loci.common.ReflectedUniverse;
#17 6.966 [javac] ^
#17 7.467 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.467 [javac] core.size() != reader.getCoreMetadataList().size())
#17 7.467 [javac] ^
#17 7.467 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.467 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 7.467 [javac] ^
#17 7.467 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.467 [javac] int n = reader.getCoreMetadataList().size();
#17 7.467 [javac] ^
#17 7.467 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.467 [javac] reader.setCoreIndex(coreIndex);
#17 7.467 [javac] ^
#17 7.467 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.467 [javac] int n = reader.getCoreMetadataList().size();
#17 7.467 [javac] ^
#17 7.468 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.468 [javac] int n = reader.getCoreMetadataList().size();
#17 7.468 [javac] ^
#17 7.468 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 7.468 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 7.468 [javac] ^
#17 7.468 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.468 [javac] int n = reader.getCoreMetadataList().size();
#17 7.468 [javac] ^
#17 7.468 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 7.468 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 7.468 [javac] ^
#17 7.468 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.468 [javac] int n = reader.getCoreMetadataList().size();
#17 7.468 [javac] ^
#17 7.468 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.468 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 7.468 [javac] ^
#17 7.468 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.468 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.468 [javac] ^
#17 7.468 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.468 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.469 [javac] ^
#17 7.469 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.469 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 7.469 [javac] ^
#17 7.469 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.469 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 7.469 [javac] ^
#17 7.469 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.469 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 7.469 [javac] ^
#17 7.469 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.469 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 7.469 [javac] ^
#17 7.469 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.469 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 7.469 [javac] ^
#17 7.470 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.470 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 7.470 [javac] ^
#17 7.670 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.670 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 7.670 [javac] ^
#17 7.670 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 7.670 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 7.670 [javac] ^
#17 7.670 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 7.670 [javac] URL url = new URL(urlPath);
#17 7.670 [javac] ^
#17 7.771 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 7.771 [javac] BitWriter out = new BitWriter();
#17 7.771 [javac] ^
#17 7.771 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 7.771 [javac] BitWriter out = new BitWriter();
#17 7.771 [javac] ^
#17 7.871 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 7.871 [javac] return new Double(v);
#17 7.871 [javac] ^
#17 8.472 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.472 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 8.472 [javac] ^
#17 8.472 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.472 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 8.472 [javac] ^
#17 8.472 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 8.472 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 8.472 [javac] ^
#17 8.572 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 8.572 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 8.572 [javac] ^
#17 8.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.772 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 8.772 [javac] ^
#17 8.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 8.772 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 8.773 [javac] ^
#17 8.873 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 8.873 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 8.873 [javac] ^
#17 8.973 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.973 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 8.973 [javac] ^
#17 8.973 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 8.973 [javac] protected ReflectedUniverse r;
#17 8.973 [javac] ^
#17 8.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 8.974 [javac] r = new ReflectedUniverse();
#17 8.974 [javac] ^
#17 8.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#17 8.974 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 8.974 [javac] ^
#17 8.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#17 8.974 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 8.974 [javac] ^
#17 8.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#17 8.974 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 8.974 [javac] ^
#17 8.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 8.974 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 8.974 [javac] ^
#17 8.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1111: warning: [deprecation] MM in UNITS has been deprecated
#17 8.974 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 8.974 [javac] ^
#17 8.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1115: warning: [deprecation] MM in UNITS has been deprecated
#17 8.974 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 8.974 [javac] ^
#17 8.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1121: warning: [deprecation] MM in UNITS has been deprecated
#17 8.974 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 8.974 [javac] ^
#17 8.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1169: warning: [deprecation] MM in UNITS has been deprecated
#17 8.974 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 8.974 [javac] ^
#17 8.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1174: warning: [deprecation] MM in UNITS has been deprecated
#17 8.974 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 8.974 [javac] ^
#17 9.074 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.074 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.074 [javac] ^
#17 9.074 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.074 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.074 [javac] ^
#17 9.074 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.074 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.074 [javac] ^
#17 9.075 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.075 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.075 [javac] ^
#17 9.175 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 9.175 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 9.175 [javac] ^
#17 9.175 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.175 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 9.175 [javac] ^
#17 9.175 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.175 [javac] result[i] = new Double(readNumber().doubleValue());
#17 9.175 [javac] ^
#17 9.175 [javac] Note: Some input files use unchecked or unsafe operations.
#17 9.175 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 9.175 [javac] 56 warnings
#17 9.180
#17 9.180 formats-bsd.jar:
#17 9.193 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 9.315 [resolver:install] Using default POM (ome:formats-bsd:8.5.0-SNAPSHOT)
#17 9.320 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.pom
#17 9.321 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.jar
#17 9.323 [resolver:install] Installing ome:formats-bsd:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 9.325 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 9.326
#17 9.326 deps-formats-gpl:
#17 9.326
#17 9.326 jar-formats-gpl:
#17 9.430 [echo] isSnapshot = true
#17 9.572
#17 9.572 init-title:
#17 9.572 [echo] ----------=========== formats-gpl ===========----------
#17 9.572
#17 9.572 init-timestamp:
#17 9.573
#17 9.573 init:
#17 9.573
#17 9.573 copy-resources:
#17 9.573 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 9.575 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 9.576
#17 9.576 compile:
#17 9.971 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 10.73 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 11.11 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#17 11.12 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 11.30 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 11.42 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#17 11.48 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 11.70 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 11.82 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#17 11.86 [resolver:resolve] Resolving artifacts
#17 11.87 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 11.87 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 12.11 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 12.11 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 12.46 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#17 12.46 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#17 12.48 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 12.69 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 12.69 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 12.69 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 12.69 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 12.69 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 12.69 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 13.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 13.99 [javac] import loci.formats.codec.BitWriter;
#17 13.99 [javac] ^
#17 14.09 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 14.09 [javac] import loci.formats.codec.BitWriter;
#17 14.09 [javac] ^
#17 16.09 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 16.09 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 16.09 [javac] ^
#17 16.09 [javac] cast to Object for a varargs call
#17 16.09 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 16.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1275: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.19 [javac] BitWriter bits = null;
#17 16.19 [javac] ^
#17 16.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1277: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.19 [javac] bits = new BitWriter(planes[index].length / 8);
#17 16.19 [javac] ^
#17 16.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 16.49 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 16.49 [javac] ^
#17 16.89 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 16.89 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 16.89 [javac] ^
#17 16.89 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 16.89 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 16.89 [javac] ^
#17 16.89 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.89 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.89 [javac] ^
#17 16.89 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.89 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.89 [javac] ^
#17 17.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 17.19 [javac] Variable variable = group.findVariable(variableName);
#17 17.20 [javac] ^
#17 17.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 17.20 [javac] Variable variable = group.findVariable(variableName);
#17 17.20 [javac] ^
#17 17.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 17.20 [javac] List<Attribute> attributes = variable.getAttributes();
#17 17.20 [javac] ^
#17 17.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 17.20 [javac] String groupName = group.getName();
#17 17.20 [javac] ^
#17 17.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 17.20 [javac] List<Attribute> attributes = group.getAttributes();
#17 17.20 [javac] ^
#17 17.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 17.20 [javac] String variableName = variable.getName();
#17 17.20 [javac] ^
#17 17.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 17.20 [javac] Group nextParent = parent.findGroup(token);
#17 17.20 [javac] ^
#17 17.20 [javac] Note: Some input files use unchecked or unsafe operations.
#17 17.20 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 17.22 [javac] 21 warnings
#17 17.22
#17 17.22 formats-gpl.jar:
#17 17.23 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 17.39 [resolver:install] Using default POM (ome:formats-gpl:8.5.0-SNAPSHOT)
#17 17.39 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.pom
#17 17.40 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.jar
#17 17.40 [resolver:install] Installing ome:formats-gpl:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 17.40 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 17.40
#17 17.40 deps-bio-formats-plugins:
#17 17.40
#17 17.40 jar-bio-formats-plugins:
#17 17.50 [echo] isSnapshot = true
#17 17.65
#17 17.65 init-title:
#17 17.65 [echo] ----------=========== bio-formats_plugins ===========----------
#17 17.65
#17 17.65 init-timestamp:
#17 17.65
#17 17.65 init:
#17 17.65
#17 17.65 copy-resources:
#17 17.65 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.66 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.66
#17 17.66 compile:
#17 17.92 [resolver:resolve] Resolving artifacts
#17 17.93 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 18.14 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 18.14 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 18.14 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 18.14 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 18.14 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 18.24 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 19.04 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.04 [javac] import loci.common.ReflectedUniverse;
#17 19.04 [javac] ^
#17 19.04 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.04 [javac] import loci.common.ReflectedUniverse;
#17 19.04 [javac] ^
#17 19.54 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 19.54 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 19.54 [javac] ^
#17 19.64 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 19.64 [javac] URL url = new URL(urlPath);
#17 19.64 [javac] ^
#17 19.74 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.74 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.74 [javac] ^
#17 19.74 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.74 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.74 [javac] ^
#17 19.84 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.84 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.84 [javac] ^
#17 19.84 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.84 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.84 [javac] ^
#17 20.04 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 20.04 [javac] url = new URL(path);
#17 20.04 [javac] ^
#17 20.24 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 20.24 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 20.24 [javac] 13 warnings
#17 20.27
#17 20.27 bio-formats-plugins.jar:
#17 20.27 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 20.30 [resolver:install] Using default POM (ome:bio-formats_plugins:8.5.0-SNAPSHOT)
#17 20.30 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.pom
#17 20.35 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.jar
#17 20.35 [resolver:install] Installing ome:bio-formats_plugins:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 20.35 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 20.35
#17 20.35 deps-bio-formats-tools:
#17 20.35
#17 20.35 jar-bio-formats-tools:
#17 20.44 [echo] isSnapshot = true
#17 20.58
#17 20.58 init-title:
#17 20.58 [echo] ----------=========== bio-formats-tools ===========----------
#17 20.58
#17 20.58 init-timestamp:
#17 20.58
#17 20.58 init:
#17 20.58
#17 20.58 copy-resources:
#17 20.58 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 20.58
#17 20.58 compile:
#17 20.83 [resolver:resolve] Resolving artifacts
#17 20.84 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 21.05 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 21.05 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 21.05 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 21.05 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 21.05 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 21.05 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 22.25 [javac] 4 warnings
#17 22.25
#17 22.25 bio-formats-tools.jar:
#17 22.25 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 22.26 [resolver:install] Using default POM (ome:bio-formats-tools:8.5.0-SNAPSHOT)
#17 22.26 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.pom
#17 22.26 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.jar
#17 22.26 [resolver:install] Installing ome:bio-formats-tools:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 22.27 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 22.27
#17 22.27 deps-tests:
#17 22.27
#17 22.27 jar-tests:
#17 22.36 [echo] isSnapshot = true
#17 22.50
#17 22.50 init-title:
#17 22.50 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 22.50
#17 22.50 init-timestamp:
#17 22.50
#17 22.50 init:
#17 22.50
#17 22.50 copy-resources:
#17 22.50 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 22.50
#17 22.50 compile:
#17 22.81 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.91 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.27 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.29 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.72 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.13 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 24.15 [resolver:resolve] Resolving artifacts
#17 24.15 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.23 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.58 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.59 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.00 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.36 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 25.37 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 25.57 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 25.57 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 25.57 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 25.57 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 25.57 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 25.57 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 26.68 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.68 [javac] int index = unflattenedReader.getCoreIndex();
#17 26.68 [javac] ^
#17 26.68 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 26.68 [javac] reader.setCoreIndex(index);
#17 26.68 [javac] ^
#17 26.88 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.88 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 26.88 [javac] ^
#17 26.88 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.88 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 26.88 [javac] ^
#17 27.18 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.18 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 27.18 [javac] ^
#17 27.18 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.18 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 27.18 [javac] ^
#17 27.18 [javac] Note: Some input files use unchecked or unsafe operations.
#17 27.18 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 27.18 [javac] 10 warnings
#17 27.19
#17 27.19 tests.jar:
#17 27.19 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 27.21 [resolver:install] Using default POM (ome:test-suite:8.5.0-SNAPSHOT)
#17 27.21 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.pom
#17 27.28 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.jar
#17 27.28 [resolver:install] Installing ome:test-suite:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 27.28 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 27.28
#17 27.28 jars:
#17 27.28
#17 27.28 copy-jars:
#17 27.28
#17 27.28 deps-formats-api:
#17 27.33 [echo] isSnapshot = true
#17 27.37
#17 27.37 install-pom:
#17 27.49 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/pom-bio-formats-8.5.0-SNAPSHOT.pom
#17 27.50 [resolver:install] Installing ome:pom-bio-formats:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 27.50 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 27.50
#17 27.50 jar-formats-api:
#17 27.58 [echo] isSnapshot = true
#17 27.71
#17 27.71 init-title:
#17 27.71 [echo] ----------=========== formats-api ===========----------
#17 27.71
#17 27.71 init-timestamp:
#17 27.71
#17 27.71 init:
#17 27.71
#17 27.71 copy-resources:
#17 27.71
#17 27.71 compile:
#17 27.87 [resolver:resolve] Resolving artifacts
#17 27.88
#17 27.88 formats-api.jar:
#17 27.90 [resolver:install] Using default POM (ome:formats-api:8.5.0-SNAPSHOT)
#17 27.90 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.pom
#17 27.90 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.jar
#17 27.90 [resolver:install] Installing ome:formats-api:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 27.90 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 27.90
#17 27.90 deps-turbojpeg:
#17 27.90
#17 27.90 jar-turbojpeg:
#17 27.99 [echo] isSnapshot = true
#17 28.11
#17 28.11 init-title:
#17 28.11 [echo] ----------=========== turbojpeg ===========----------
#17 28.11
#17 28.11 init-timestamp:
#17 28.11
#17 28.11 init:
#17 28.11
#17 28.11 copy-resources:
#17 28.11
#17 28.11 compile:
#17 28.12 [resolver:resolve] Resolving artifacts
#17 28.12
#17 28.12 jar:
#17 28.13 [resolver:install] Using default POM (ome:turbojpeg:8.5.0-SNAPSHOT)
#17 28.14 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.pom
#17 28.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.jar
#17 28.14 [resolver:install] Installing ome:turbojpeg:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 28.14 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 28.14
#17 28.14 deps-formats-bsd:
#17 28.14
#17 28.14 jar-formats-bsd:
#17 28.22 [echo] isSnapshot = true
#17 28.35
#17 28.35 init-title:
#17 28.35 [echo] ----------=========== formats-bsd ===========----------
#17 28.35
#17 28.35 init-timestamp:
#17 28.35
#17 28.35 init:
#17 28.35
#17 28.35 copy-resources:
#17 28.35
#17 28.35 compile:
#17 28.55 [resolver:resolve] Resolving artifacts
#17 28.57
#17 28.57 formats-bsd.jar:
#17 28.60 [resolver:install] Using default POM (ome:formats-bsd:8.5.0-SNAPSHOT)
#17 28.60 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.pom
#17 28.60 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.jar
#17 28.60 [resolver:install] Installing ome:formats-bsd:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 28.60 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 28.60
#17 28.60 deps-formats-gpl:
#17 28.60
#17 28.60 jar-formats-gpl:
#17 28.69 [echo] isSnapshot = true
#17 28.82
#17 28.82 init-title:
#17 28.82 [echo] ----------=========== formats-gpl ===========----------
#17 28.82
#17 28.82 init-timestamp:
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#17 28.82 init:
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#17 28.82 copy-resources:
#17 28.82
#17 28.82 compile:
#17 29.05 [resolver:resolve] Resolving artifacts
#17 29.07
#17 29.07 formats-gpl.jar:
#17 29.10 [resolver:install] Using default POM (ome:formats-gpl:8.5.0-SNAPSHOT)
#17 29.11 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.pom
#17 29.11 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.jar
#17 29.11 [resolver:install] Installing ome:formats-gpl:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 29.11 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 29.11
#17 29.11 deps-bio-formats-plugins:
#17 29.11
#17 29.11 jar-bio-formats-plugins:
#17 29.19 [echo] isSnapshot = true
#17 29.32
#17 29.32 init-title:
#17 29.32 [echo] ----------=========== bio-formats_plugins ===========----------
#17 29.32
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#17 29.32
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#17 29.32
#17 29.32 copy-resources:
#17 29.32
#17 29.32 compile:
#17 29.56 [resolver:resolve] Resolving artifacts
#17 29.57
#17 29.57 bio-formats-plugins.jar:
#17 29.58 [resolver:install] Using default POM (ome:bio-formats_plugins:8.5.0-SNAPSHOT)
#17 29.58 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.pom
#17 29.59 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.jar
#17 29.59 [resolver:install] Installing ome:bio-formats_plugins:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 29.59 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 29.59
#17 29.59 deps-bio-formats-tools:
#17 29.59
#17 29.59 jar-bio-formats-tools:
#17 29.68 [echo] isSnapshot = true
#17 29.80
#17 29.80 init-title:
#17 29.80 [echo] ----------=========== bio-formats-tools ===========----------
#17 29.80
#17 29.80 init-timestamp:
#17 29.80
#17 29.80 init:
#17 29.80
#17 29.80 copy-resources:
#17 29.80
#17 29.80 compile:
#17 30.03 [resolver:resolve] Resolving artifacts
#17 30.04
#17 30.04 bio-formats-tools.jar:
#17 30.04 [resolver:install] Using default POM (ome:bio-formats-tools:8.5.0-SNAPSHOT)
#17 30.05 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.pom
#17 30.05 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.jar
#17 30.05 [resolver:install] Installing ome:bio-formats-tools:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 30.05 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 30.05
#17 30.05 deps-tests:
#17 30.05
#17 30.05 jar-tests:
#17 30.14 [echo] isSnapshot = true
#17 30.27
#17 30.27 init-title:
#17 30.27 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 30.27
#17 30.27 init-timestamp:
#17 30.27
#17 30.27 init:
#17 30.27
#17 30.27 copy-resources:
#17 30.27
#17 30.27 compile:
#17 30.51 [resolver:resolve] Resolving artifacts
#17 30.52
#17 30.52 tests.jar:
#17 30.52 [resolver:install] Using default POM (ome:test-suite:8.5.0-SNAPSHOT)
#17 30.53 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.pom
#17 30.53 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.jar
#17 30.53 [resolver:install] Installing ome:test-suite:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 30.53 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 30.53
#17 30.53 jars:
#17 30.53
#17 30.53 tools:
#17 30.53 [echo] ----------=========== bioformats_package ===========----------
#17 30.62 [echo] isSnapshot = true
#17 30.74
#17 30.74 init-timestamp:
#17 30.74
#17 30.74 bundle:
#17 30.98 [resolver:resolve] Resolving artifacts
#17 30.99 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.02 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.3-SNAPSHOT/ome-common-6.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.04 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.07 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.07 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.13 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.15 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.19 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.20 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.41 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.46 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.47 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.53 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.53 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.55 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.55 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.70 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.15 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.15 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.15 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.16 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.24 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.24 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.25 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.3-SNAPSHOT/ome-xml-6.5.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.30 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.3-SNAPSHOT/specification-6.5.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.35 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.37 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.3-SNAPSHOT/ome-codecs-1.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.38 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.50 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.57 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.61 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.61 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.71 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.73 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.14 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.17 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.19 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.29 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.30 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.32 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.33 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.54 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.60 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.66 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.75 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.77 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.77 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.88 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 34.33 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.44 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.49 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.50 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.51 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.56 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 34.94 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.95 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.96 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.97 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.99 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.35 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.16/logback-core-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.45 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.16/logback-classic-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.85 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 42.55 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 43.10 [resolver:install] Using default POM (ome:bioformats_package:8.5.0-SNAPSHOT)
#17 43.11 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/bioformats_package-8.5.0-SNAPSHOT.pom
#17 43.11 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/bioformats_package-8.5.0-SNAPSHOT.jar
#17 43.15 [resolver:install] Installing ome:bioformats_package:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 43.15 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 43.16
#17 43.16 BUILD SUCCESSFUL
#17 43.16 Total time: 42 seconds
#17 DONE 43.4s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.0s
#19 exporting to image
#19 exporting layers
#19 exporting layers 3.4s done
#19 writing image sha256:f3bded4a628e5688e26db56e0fb3b87b1392b3e6d8a0198e3746c07239046dc1 done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 3.4s
Finished: SUCCESS
