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Full Log#14 296.3 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#14 296.3 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (80 kB at 100 kB/s)
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (4.3 MB at 1.5 MB/s)
#14 299.2 [[1;34mINFO[m]
#14 299.2 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mformats-gpl[0;1m ---[m
#14 299.2 [[1;34mINFO[m]
#14 299.2 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-gpl[0;1m ---[m
#14 299.2 [[1;34mINFO[m]
#14 299.2 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 299.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 299.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 299.2 [[1;34mINFO[m] Storing buildNumber: a849cb851b1c32a750f42f1c06242ecd135dd6e6 at timestamp: 1746719429669
#14 299.2 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 299.2 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 299.2
#14 299.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 299.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 299.2 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 299.2 [[1;34mINFO[m]
#14 299.2 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mformats-gpl[0;1m ---[m
#14 299.2 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 299.2 [[1;34mINFO[m] Copying 2 resources
#14 299.2 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/formats-gpl/lib
#14 299.2 [[1;34mINFO[m] Copying 0 resource
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#14 299.2 [[1;34mINFO[m]
#14 299.2 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mformats-gpl[0;1m ---[m
#14 299.2 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 299.2 [[1;34mINFO[m] Compiling 176 source files to /bio-formats-build/bioformats/components/formats-gpl/target/classes
#14 301.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 301.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 301.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 301.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
#14 301.4 [[1;34mINFO[m]
#14 301.4 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mformats-gpl[0;1m ---[m
#14 301.4 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 301.4 [[1;34mINFO[m] Copying 24 resources
#14 301.5 [[1;34mINFO[m]
#14 301.5 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mformats-gpl[0;1m ---[m
#14 301.5 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 301.5 [[1;34mINFO[m] Compiling 23 source files to /bio-formats-build/bioformats/components/formats-gpl/target/test-classes
#14 301.7 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 301.7 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 301.7 [[1;34mINFO[m]
#14 301.7 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mformats-gpl[0;1m ---[m
#14 301.7 [[1;34mINFO[m]
#14 301.7 [[1;34mINFO[m] -------------------------------------------------------
#14 301.7 [[1;34mINFO[m] T E S T S
#14 301.7 [[1;34mINFO[m] -------------------------------------------------------
#14 301.9 [[1;34mINFO[m] Running [1mTestSuite[m
#14 303.1 2025-05-08 15:50:33,600 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@24528a25 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 303.1 2025-05-08 15:50:33,603 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@46292372 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 303.2 2025-05-08 15:50:33,656 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@1f9d6c7b reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 303.2 2025-05-08 15:50:33,656 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@68ace111 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 303.2 2025-05-08 15:50:33,705 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@4c9e9fb8 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 303.2 2025-05-08 15:50:33,705 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@9ec531 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 303.3 2025-05-08 15:50:33,756 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@29006752 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 303.3 2025-05-08 15:50:33,757 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@534243e4 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 303.3 2025-05-08 15:50:33,804 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@2e647e59 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 303.3 2025-05-08 15:50:33,805 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@4bd2f0dc reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 303.4 2025-05-08 15:50:33,870 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@6bff19ff reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 303.4 2025-05-08 15:50:33,870 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@41e1455d reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 303.4 2025-05-08 15:50:33,920 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@35c09b94 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 303.4 2025-05-08 15:50:33,920 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@2d0bfb24 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 303.5 2025-05-08 15:50:33,967 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@59942b48 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 303.5 2025-05-08 15:50:33,967 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@1869f114 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 303.8 [[1;34mINFO[m] [1;32mTests run: [0;1;32m99[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.893 s - in [1mTestSuite[m
#14 304.1 [[1;34mINFO[m]
#14 304.1 [[1;34mINFO[m] Results:
#14 304.1 [[1;34mINFO[m]
#14 304.1 [[1;34mINFO[m] [1;32mTests run: 99, Failures: 0, Errors: 0, Skipped: 0[m
#14 304.1 [[1;34mINFO[m]
#14 304.1 [[1;34mINFO[m]
#14 304.1 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-mdb-test)[m @ [36mformats-gpl[0;1m ---[m
#14 304.1 [[1;34mINFO[m]
#14 304.1 [[1;34mINFO[m] -------------------------------------------------------
#14 304.1 [[1;34mINFO[m] T E S T S
#14 304.1 [[1;34mINFO[m] -------------------------------------------------------
#14 304.3 [[1;34mINFO[m] Running [1mTestSuite[m
#14 304.7 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.461 s - in [1mTestSuite[m
#14 305.1 [[1;34mINFO[m]
#14 305.1 [[1;34mINFO[m] Results:
#14 305.1 [[1;34mINFO[m]
#14 305.1 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 305.1 [[1;34mINFO[m]
#14 305.1 [[1;34mINFO[m]
#14 305.1 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-poi-test)[m @ [36mformats-gpl[0;1m ---[m
#14 305.1 [[1;34mINFO[m]
#14 305.1 [[1;34mINFO[m] -------------------------------------------------------
#14 305.1 [[1;34mINFO[m] T E S T S
#14 305.1 [[1;34mINFO[m] -------------------------------------------------------
#14 305.2 [[1;34mINFO[m] Running [1mTestSuite[m
#14 305.7 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.428 s - in [1mTestSuite[m
#14 306.0 [[1;34mINFO[m]
#14 306.0 [[1;34mINFO[m] Results:
#14 306.0 [[1;34mINFO[m]
#14 306.0 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 306.0 [[1;34mINFO[m]
#14 306.0 [[1;34mINFO[m]
#14 306.0 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-netcdf-test)[m @ [36mformats-gpl[0;1m ---[m
#14 306.0 [[1;34mINFO[m]
#14 306.0 [[1;34mINFO[m] -------------------------------------------------------
#14 306.0 [[1;34mINFO[m] T E S T S
#14 306.0 [[1;34mINFO[m] -------------------------------------------------------
#14 306.2 [[1;34mINFO[m] Running [1mTestSuite[m
#14 306.6 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.442 s - in [1mTestSuite[m
#14 307.0 [[1;34mINFO[m]
#14 307.0 [[1;34mINFO[m] Results:
#14 307.0 [[1;34mINFO[m]
#14 307.0 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 307.0 [[1;34mINFO[m]
#14 307.0 [[1;34mINFO[m]
#14 307.0 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mformats-gpl[0;1m ---[m
#14 307.0 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.2.0-SNAPSHOT.jar
#14 307.0 [[1;34mINFO[m]
#14 307.0 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m >>>[m
#14 307.1 [[1;34mINFO[m]
#14 307.1 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-gpl[0;1m ---[m
#14 307.1 [[1;34mINFO[m]
#14 307.1 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 307.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 307.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 307.1 [[1;34mINFO[m] Storing buildNumber: a849cb851b1c32a750f42f1c06242ecd135dd6e6 at timestamp: 1746719437568
#14 307.1 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 307.1 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 307.1
#14 307.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 307.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 307.1 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 307.1 [[1;34mINFO[m]
#14 307.1 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m <<<[m
#14 307.1 [[1;34mINFO[m]
#14 307.1 [[1;34mINFO[m]
#14 307.1 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 307.1 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.2.0-SNAPSHOT-sources.jar
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 307.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.2.0-SNAPSHOT-tests.jar
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mformats-gpl[0;1m ---[m
#14 307.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.2.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar
#14 307.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.pom
#14 307.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.2.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT-sources.jar
#14 307.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.2.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT-tests.jar
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats_plugins[0;1m >-----------------------[m
#14 307.2 [[1;34mINFO[m] [1mBuilding Bio-Formats Plugins for ImageJ 8.2.0-SNAPSHOT [17/24][m
#14 307.2 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 307.2 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
#14 307.2 Progress (1): 4.1/7.9 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom (7.9 kB at 247 kB/s)
#14 307.3 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar (2.5 MB at 18 MB/s)
#14 307.4 [[1;34mINFO[m]
#14 307.4 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 307.4 [[1;34mINFO[m]
#14 307.4 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 307.4 [[1;34mINFO[m]
#14 307.4 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 307.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 307.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 307.4 [[1;34mINFO[m] Storing buildNumber: a849cb851b1c32a750f42f1c06242ecd135dd6e6 at timestamp: 1746719437907
#14 307.4 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 307.4 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 307.4
#14 307.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 307.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 307.4 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 307.4 [[1;34mINFO[m]
#14 307.4 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 307.4 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 307.4 [[1;34mINFO[m] Copying 3 resources
#14 307.4 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
#14 307.4 [[1;34mINFO[m] Copying 0 resource
#14 307.4 [[1;34mINFO[m] Copying 0 resource
#14 307.4 [[1;34mINFO[m]
#14 307.4 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 307.4 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 307.4 [[1;34mINFO[m] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/classes
#14 307.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 307.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 307.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 307.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
#14 307.9 [[1;34mINFO[m]
#14 307.9 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 307.9 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 307.9 [[1;34mINFO[m] Copying 1 resource
#14 307.9 [[1;34mINFO[m]
#14 307.9 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 307.9 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 307.9 [[1;34mINFO[m] Compiling 3 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/test-classes
#14 308.1 [[1;34mINFO[m]
#14 308.1 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 308.1 [[1;34mINFO[m]
#14 308.1 [[1;34mINFO[m] -------------------------------------------------------
#14 308.1 [[1;34mINFO[m] T E S T S
#14 308.1 [[1;34mINFO[m] -------------------------------------------------------
#14 308.3 [[1;34mINFO[m] Running [1mTestSuite[m
#14 309.6 Warning: Data has too many channels for Colorized color mode
#14 309.6 Warning: Data has too many channels for Colorized color mode
#14 309.7 Warning: Data has too many channels for Colorized color mode
#14 309.7 Warning: Data has too many channels for Colorized color mode
#14 309.8 Warning: Data has too many channels for Colorized color mode
#14 309.8 Warning: Data has too many channels for Colorized color mode
#14 309.9 Warning: Data has too many channels for Colorized color mode
#14 309.9 Warning: Data has too many channels for Colorized color mode
#14 310.0 Warning: Data has too many channels for Composite color mode
#14 310.0 Warning: Data has too many channels for Composite color mode
#14 310.3 Warning: Data has too many channels for Composite color mode
#14 310.3 Warning: Data has too many channels for Composite color mode
#14 310.3 Warning: Data has too many channels for Composite color mode
#14 310.3 Warning: Data has too many channels for Composite color mode
#14 310.3 Warning: Data has too many channels for Composite color mode
#14 310.3 Warning: Data has too many channels for Composite color mode
#14 310.4 Warning: Data has too many channels for Composite color mode
#14 310.4 Warning: Data has too many channels for Composite color mode
#14 310.4 Warning: Data has too many channels for Composite color mode
#14 310.4 Warning: Data has too many channels for Composite color mode
#14 310.4 Warning: Data has too many channels for Composite color mode
#14 310.4 Warning: Data has too many channels for Composite color mode
#14 310.4 Warning: Data has too many channels for Composite color mode
#14 310.4 Warning: Data has too many channels for Composite color mode
#14 310.4 Warning: Data has too many channels for Composite color mode
#14 310.4 Warning: Data has too many channels for Composite color mode
#14 310.7 Warning: Data has too many channels for Composite color mode
#14 310.7 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.8 Warning: Data has too many channels for Composite color mode
#14 310.9 Warning: Data has too many channels for Composite color mode
#14 310.9 Warning: Data has too many channels for Composite color mode
#14 310.9 Warning: Data has too many channels for Composite color mode
#14 310.9 Warning: Data has too many channels for Composite color mode
#14 310.9 Warning: Data has too many channels for Composite color mode
#14 311.2 Warning: Data has too many channels for Composite color mode
#14 311.2 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.3 Warning: Data has too many channels for Composite color mode
#14 311.4 Warning: Data has too many channels for Composite color mode
#14 311.4 Warning: Data has too many channels for Composite color mode
#14 311.4 Warning: Data has too many channels for Composite color mode
#14 311.4 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.9 Warning: Data has too many channels for Composite color mode
#14 311.9 Warning: Data has too many channels for Composite color mode
#14 311.9 Warning: Data has too many channels for Composite color mode
#14 311.9 Warning: Data has too many channels for Custom color mode
#14 311.9 Warning: Data has too many channels for Custom color mode
#14 312.0 Warning: Data has too many channels for Custom color mode
#14 312.0 Warning: Data has too many channels for Custom color mode
#14 312.0 Warning: Data has too many channels for Custom color mode
#14 312.0 Warning: Data has too many channels for Custom color mode
#14 312.1 Warning: Data has too many channels for Custom color mode
#14 312.1 Warning: Data has too many channels for Custom color mode
#14 312.1 Warning: Data has too many channels for Default color mode
#14 312.1 Warning: Data has too many channels for Default color mode
#14 312.1 Warning: Data has too many channels for Default color mode
#14 312.2 Warning: Data has too many channels for Default color mode
#14 312.2 Warning: Data has too many channels for Default color mode
#14 312.2 Warning: Data has too many channels for Default color mode
#14 312.2 Warning: Data has too many channels for Default color mode
#14 312.3 Warning: Data has too many channels for Default color mode
#14 312.3 Warning: Data has too many channels for Default color mode
#14 312.3 Warning: Data has too many channels for Default color mode
#14 312.3 Warning: Data has too many channels for Default color mode
#14 312.4 Warning: Data has too many channels for Default color mode
#14 312.4 Warning: Data has too many channels for Default color mode
#14 312.4 Warning: Data has too many channels for Default color mode
#14 312.4 Warning: Data has too many channels for Default color mode
#14 312.5 Warning: Data has too many channels for Default color mode
#14 312.5 Warning: Data has too many channels for Grayscale color mode
#14 312.5 Warning: Data has too many channels for Grayscale color mode
#14 312.5 Warning: Data has too many channels for Grayscale color mode
#14 312.5 Warning: Data has too many channels for Grayscale color mode
#14 312.6 Warning: Data has too many channels for Grayscale color mode
#14 312.6 Warning: Data has too many channels for Grayscale color mode
#14 312.6 Warning: Data has too many channels for Grayscale color mode
#14 312.6 Warning: Data has too many channels for Grayscale color mode
#14 312.7 Warning: Data has too many channels for Colorized color mode
#14 312.7 Warning: Data has too many channels for Colorized color mode
#14 312.7 Warning: Data has too many channels for Colorized color mode
#14 313.3 Warning: Data has too many channels for Default color mode
#14 313.6 [[1;34mINFO[m] [1;32mTests run: [0;1;32m30[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.277 s - in [1mTestSuite[m
#14 313.9 [[1;34mINFO[m]
#14 313.9 [[1;34mINFO[m] Results:
#14 313.9 [[1;34mINFO[m]
#14 313.9 [[1;34mINFO[m] [1;32mTests run: 30, Failures: 0, Errors: 0, Skipped: 0[m
#14 313.9 [[1;34mINFO[m]
#14 313.9 [[1;34mINFO[m]
#14 313.9 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 313.9 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.2.0-SNAPSHOT.jar
#14 313.9 [[1;34mINFO[m]
#14 313.9 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m >>>[m
#14 313.9 [[1;34mINFO[m]
#14 313.9 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 313.9 [[1;34mINFO[m]
#14 313.9 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 313.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 313.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 313.9 [[1;34mINFO[m] Storing buildNumber: a849cb851b1c32a750f42f1c06242ecd135dd6e6 at timestamp: 1746719444422
#14 313.9 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 313.9 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 313.9
#14 313.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 313.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 313.9 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 313.9 [[1;34mINFO[m]
#14 313.9 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m <<<[m
#14 313.9 [[1;34mINFO[m]
#14 313.9 [[1;34mINFO[m]
#14 313.9 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 314.0 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.2.0-SNAPSHOT-sources.jar
#14 314.0 [[1;34mINFO[m]
#14 314.0 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 314.0 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.2.0-SNAPSHOT-tests.jar
#14 314.0 [[1;34mINFO[m]
#14 314.0 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 314.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.2.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar
#14 314.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.pom
#14 314.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.2.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT-sources.jar
#14 314.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.2.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT-tests.jar
#14 314.0 [[1;34mINFO[m]
#14 314.0 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bio-formats-tools[0;1m >------------------------[m
#14 314.0 [[1;34mINFO[m] [1mBuilding Bio-Formats command line tools 8.2.0-SNAPSHOT [18/24][m
#14 314.0 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 314.1 [[1;34mINFO[m]
#14 314.1 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats-tools[0;1m ---[m
#14 314.1 [[1;34mINFO[m]
#14 314.1 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 314.1 [[1;34mINFO[m]
#14 314.1 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 314.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 314.1 [[1;34mINFO[m] Storing buildNumber: a849cb851b1c32a750f42f1c06242ecd135dd6e6 at timestamp: 1746719444552
#14 314.1 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 314.1 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 314.1
#14 314.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 314.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 314.1 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 314.1 [[1;34mINFO[m]
#14 314.1 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 314.1 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 314.1 [[1;34mINFO[m] Copying 0 resource
#14 314.1 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-tools/lib
#14 314.1 [[1;34mINFO[m] Copying 0 resource
#14 314.1 [[1;34mINFO[m] Copying 0 resource
#14 314.1 [[1;34mINFO[m]
#14 314.1 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 314.1 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 314.1 [[1;34mINFO[m] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/target/classes
#14 314.3 [[1;34mINFO[m]
#14 314.3 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 314.3 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 314.3 [[1;34mINFO[m] Copying 1 resource
#14 314.3 [[1;34mINFO[m]
#14 314.3 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 314.3 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 314.3 [[1;34mINFO[m] Compiling 1 source file to /bio-formats-build/bioformats/components/bio-formats-tools/target/test-classes
#14 314.4 [[1;34mINFO[m]
#14 314.4 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats-tools[0;1m ---[m
#14 314.4 [[1;34mINFO[m]
#14 314.4 [[1;34mINFO[m] -------------------------------------------------------
#14 314.4 [[1;34mINFO[m] T E S T S
#14 314.4 [[1;34mINFO[m] -------------------------------------------------------
#14 314.6 [[1;34mINFO[m] Running loci.formats.tools.[1mImageConverterTest[m
#14 403.4 [[1;34mINFO[m] [1;32mTests run: [0;1;32m55[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 88.781 s - in loci.formats.tools.[1mImageConverterTest[m
#14 403.7 [[1;34mINFO[m]
#14 403.7 [[1;34mINFO[m] Results:
#14 403.7 [[1;34mINFO[m]
#14 403.7 [[1;34mINFO[m] [1;32mTests run: 55, Failures: 0, Errors: 0, Skipped: 0[m
#14 403.7 [[1;34mINFO[m]
#14 403.7 [[1;34mINFO[m]
#14 403.7 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats-tools[0;1m ---[m
#14 403.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.2.0-SNAPSHOT.jar
#14 403.8 [[1;34mINFO[m]
#14 403.8 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m >>>[m
#14 403.8 [[1;34mINFO[m]
#14 403.8 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 403.8 [[1;34mINFO[m]
#14 403.8 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 403.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 403.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 403.8 [[1;34mINFO[m] Storing buildNumber: a849cb851b1c32a750f42f1c06242ecd135dd6e6 at timestamp: 1746719534252
#14 403.8 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 403.8 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 403.8
#14 403.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 403.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 403.8 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 403.8 [[1;34mINFO[m]
#14 403.8 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m <<<[m
#14 403.8 [[1;34mINFO[m]
#14 403.8 [[1;34mINFO[m]
#14 403.8 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 403.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.2.0-SNAPSHOT-sources.jar
#14 403.8 [[1;34mINFO[m]
#14 403.8 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 403.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.2.0-SNAPSHOT-tests.jar
#14 403.8 [[1;34mINFO[m]
#14 403.8 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats-tools[0;1m ---[m
#14 403.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.2.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar
#14 403.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.pom
#14 403.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.2.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT-sources.jar
#14 403.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.2.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT-tests.jar
#14 403.8 [[1;34mINFO[m]
#14 403.8 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bioformats_package[0;1m >-----------------------[m
#14 403.8 [[1;34mINFO[m] [1mBuilding bioformats_package bundle 8.2.0-SNAPSHOT [19/24][m
#14 403.8 [[1;34mINFO[m] [1m--------------------------------[ pom ]---------------------------------[m
#14 403.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.pom
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#14 403.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.jar
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#14 403.9 [[1;34mINFO[m]
#14 403.9 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbioformats_package[0;1m ---[m
#14 403.9 [[1;34mINFO[m]
#14 403.9 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 403.9 [[1;34mINFO[m]
#14 403.9 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 403.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 403.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 403.9 [[1;34mINFO[m] Storing buildNumber: a849cb851b1c32a750f42f1c06242ecd135dd6e6 at timestamp: 1746719534381
#14 403.9 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 403.9 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 403.9
#14 403.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 403.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 403.9 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 403.9 [[1;34mINFO[m]
#14 403.9 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbioformats_package[0;1m >>>[m
#14 403.9 [[1;34mINFO[m]
#14 403.9 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 403.9 [[1;34mINFO[m]
#14 403.9 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 403.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 403.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 403.9 [[1;34mINFO[m] Storing buildNumber: a849cb851b1c32a750f42f1c06242ecd135dd6e6 at timestamp: 1746719534399
#14 403.9 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 403.9 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 403.9
#14 403.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 403.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 403.9 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 403.9 [[1;34mINFO[m]
#14 403.9 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbioformats_package[0;1m <<<[m
#14 403.9 [[1;34mINFO[m]
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#14 403.9 [[1;34mINFO[m]
#14 403.9 [[1;34mINFO[m] [1m--- [0;32mmaven-assembly-plugin:3.1.0:single[m [1m(make-assembly)[m @ [36mbioformats_package[0;1m ---[m
#14 403.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-artifact-transfer/0.9.0/maven-artifact-transfer-0.9.0.pom
#14 403.9 Progress (1): 4.1/7.6 kB
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#14 404.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-artifact-transfer/0.9.0/maven-artifact-transfer-0.9.0.jar
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#14 404.1 [[1;34mINFO[m] Reading assembly descriptor: assembly.xml
#14 404.4 [[1;33mWARNING[m] The following patterns were never triggered in this artifact exclusion filter:
#14 404.4 o 'gov.nih.imagej:imagej'
#14 404.4 o 'net.imagej:ij'
#14 404.4 o 'org.springframework:spring*'
#14 404.4 o 'aopalliance:aopalliance'
#14 404.4 o 'org.aspectj:aspectj*'
#14 404.4 o 'org.slf4j:slf4j-log4j12'
#14 404.4 o 'log4j:log4j'
#14 404.4 o 'org.testng:testng'
#14 404.4 o 'com.beust:jcommander'
#14 404.4 o 'org.beanshell:bsh'
#14 404.4 o 'edu.princeton.cup:java-cup'
#14 404.4 o 'org.apache.bcel:bcel'
#14 404.4 o 'regexp:regexp'
#14 404.4 o 'org.apache.ant:ant-trax'
#14 404.4 o 'edu.ucar:udunits'
#14 404.4 o 'javax.servlet:servlet-api'
#14 404.4
#14 404.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.8/maven-bundle-plugin-5.1.8.pom
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#14 404.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/felix-parent/7/felix-parent-7.pom
#14 404.5 Progress (1): 4.1/21 kB
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#14 404.5 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/6.0.0/org.osgi.core-6.0.0.pom
#14 404.5 Progress (1): 1.1 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/6.0.0/org.osgi.core-6.0.0.pom (1.1 kB at 44 kB/s)
#14 404.5 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/6.3.1/biz.aQute.bndlib-6.3.1.pom
#14 404.6 Progress (1): 4.1/5.2 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/6.3.1/biz.aQute.bndlib-6.3.1.pom (5.2 kB at 194 kB/s)
#14 404.6 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.dto/1.0.0/org.osgi.dto-1.0.0.pom
#14 404.6 Progress (1): 1.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.dto/1.0.0/org.osgi.dto-1.0.0.pom (1.3 kB at 47 kB/s)
#14 404.6 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.resource/1.0.0/org.osgi.resource-1.0.0.pom
#14 404.6 Progress (1): 1.3 kB
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#14 404.6 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.framework/1.8.0/org.osgi.framework-1.8.0.pom
#14 404.6 Progress (1): 1.3 kB
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#14 404.7 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.tracker/1.5.4/org.osgi.util.tracker-1.5.4.pom
#14 404.7 Progress (1): 1.9 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.tracker/1.5.4/org.osgi.util.tracker-1.5.4.pom (1.9 kB at 72 kB/s)
#14 404.7 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/osgi.annotation/8.0.1/osgi.annotation-8.0.1.pom
#14 404.7 Progress (1): 1.5 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/osgi.annotation/8.0.1/osgi.annotation-8.0.1.pom (1.5 kB at 57 kB/s)
#14 404.7 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.log/1.3.0/org.osgi.service.log-1.3.0.pom
#14 404.7 Progress (1): 1.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.log/1.3.0/org.osgi.service.log-1.3.0.pom (1.3 kB at 48 kB/s)
#14 404.7 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.repository/1.1.0/org.osgi.service.repository-1.1.0.pom
#14 404.8 Progress (1): 1.3 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.service.repository/1.1.0/org.osgi.service.repository-1.1.0.pom (1.3 kB at 44 kB/s)
#14 404.8 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.function/1.2.0/org.osgi.util.function-1.2.0.pom
#14 404.8 Progress (1): 1.7 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.function/1.2.0/org.osgi.util.function-1.2.0.pom (1.7 kB at 66 kB/s)
#14 404.8 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.promise/1.2.0/org.osgi.util.promise-1.2.0.pom
#14 404.8 Progress (1): 1.9 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.promise/1.2.0/org.osgi.util.promise-1.2.0.pom (1.9 kB at 67 kB/s)
#14 404.8 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.function/1.1.0/org.osgi.util.function-1.1.0.pom
#14 404.9 Progress (1): 1.4 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.util.function/1.1.0/org.osgi.util.function-1.1.0.pom (1.4 kB at 46 kB/s)
#14 404.9 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bnd.util/6.3.1/biz.aQute.bnd.util-6.3.1.pom
#14 404.9 Progress (1): 2.7 kB
Downloaded from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bnd.util/6.3.1/biz.aQute.bnd.util-6.3.1.pom (2.7 kB at 102 kB/s)
#14 404.9 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.pom
#14 404.9 Progress (1): 3.8 kB
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#14 404.9 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-parent/1.7.25/slf4j-parent-1.7.25.pom
#14 404.9 Progress (1): 4.1/14 kB
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#14 405.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.bundlerepository/1.6.6/org.apache.felix.bundlerepository-1.6.6.pom
#14 405.0 Progress (1): 4.1/5.9 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/org.apache.felix.bundlerepository/1.6.6/org.apache.felix.bundlerepository-1.6.6.pom (5.9 kB at 184 kB/s)
#14 405.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/felix-parent/2.1/felix-parent-2.1.pom
#14 405.0 Progress (1): 4.1/9.7 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/felix-parent/2.1/felix-parent-2.1.pom (9.7 kB at 372 kB/s)
#14 405.0 Downloading from centr
#14 405.0 [output clipped, log limit 2MiB reached]
#14 531.1 SLF4J: No SLF4J providers were found.
#14 531.1 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 531.1 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 531.5 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#14 531.5 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#14 531.5 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#14 531.5 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#14 DONE 541.5s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.453 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.318 [echo] isSnapshot = true
#16 3.439
#16 3.439 copy-jars:
#16 3.439
#16 3.439 deps-formats-api:
#16 3.530 [echo] isSnapshot = true
#16 3.591
#16 3.591 install-pom:
#16 3.788 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/pom-bio-formats-8.2.0-SNAPSHOT.pom
#16 3.798 [resolver:install] Installing ome:pom-bio-formats:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 3.803 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.804
#16 3.804 jar-formats-api:
#16 3.926 [echo] isSnapshot = true
#16 4.098
#16 4.098 init-title:
#16 4.098 [echo] ----------=========== formats-api ===========----------
#16 4.099
#16 4.099 init-timestamp:
#16 4.105
#16 4.105 init:
#16 4.105
#16 4.105 copy-resources:
#16 4.107 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.120 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.122
#16 4.122 compile:
#16 4.306 [resolver:resolve] Resolving artifacts
#16 4.333 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.564 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 4.565 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 4.565 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 4.565 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 5.266 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.266 [javac] import loci.common.ReflectedUniverse;
#16 5.266 [javac] ^
#16 5.566 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.566 [javac] int currentIndex = r.getCoreIndex();
#16 5.566 [javac] ^
#16 5.566 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.566 [javac] r.setCoreIndex(coreIndex);
#16 5.567 [javac] ^
#16 5.567 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.567 [javac] r.setCoreIndex(currentIndex);
#16 5.567 [javac] ^
#16 5.667 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.667 [javac] public void setCoreIndex(int no) {
#16 5.667 [javac] ^
#16 5.667 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.667 [javac] public int getCoreIndex() {
#16 5.667 [javac] ^
#16 5.667 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.667 [javac] public int coreIndexToSeries(int index)
#16 5.667 [javac] ^
#16 5.668 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.668 [javac] public int seriesToCoreIndex(int series)
#16 5.668 [javac] ^
#16 5.668 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.668 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.668 [javac] ^
#16 5.768 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.768 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 5.768 [javac] ^
#16 5.768 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.768 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 5.768 [javac] ^
#16 5.769 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.769 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 5.769 [javac] ^
#16 5.769 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.769 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 5.769 [javac] ^
#16 5.869 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#16 5.869 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#16 5.869 [javac] ^
#16 5.869 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.869 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.869 [javac] ^
#16 5.869 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.870 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.870 [javac] ^
#16 5.970 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.970 [javac] public void setCoreIndex(int no) {
#16 5.970 [javac] ^
#16 5.970 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.970 [javac] public int getCoreIndex() {
#16 5.970 [javac] ^
#16 5.971 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.971 [javac] public int coreIndexToSeries(int index) {
#16 5.971 [javac] ^
#16 5.971 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.971 [javac] public int seriesToCoreIndex(int series) {
#16 5.971 [javac] ^
#16 5.971 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.971 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.971 [javac] ^
#16 5.971 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.971 [javac] return getReader().getCoreMetadataList();
#16 5.971 [javac] ^
#16 5.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.972 [javac] return getReader().getCoreIndex();
#16 5.972 [javac] ^
#16 5.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.972 [javac] getReader().setCoreIndex(no);
#16 5.972 [javac] ^
#16 5.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.972 [javac] return getReader().seriesToCoreIndex(series);
#16 5.972 [javac] ^
#16 5.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.972 [javac] return getReader().coreIndexToSeries(index);
#16 5.972 [javac] ^
#16 6.073 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.073 [javac] public void setCoreIndex(int no) {
#16 6.074 [javac] ^
#16 6.074 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.074 [javac] public int getCoreIndex() {
#16 6.074 [javac] ^
#16 6.074 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.074 [javac] public int coreIndexToSeries(int index) {
#16 6.074 [javac] ^
#16 6.074 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.074 [javac] public int seriesToCoreIndex(int series) {
#16 6.074 [javac] ^
#16 6.074 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.074 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 6.074 [javac] ^
#16 6.074 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.074 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.074 [javac] ^
#16 6.074 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.074 [javac] return reader.getCoreIndex();
#16 6.074 [javac] ^
#16 6.075 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.075 [javac] reader.setCoreIndex(no);
#16 6.075 [javac] ^
#16 6.075 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.075 [javac] return reader.seriesToCoreIndex(series);
#16 6.075 [javac] ^
#16 6.075 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.075 [javac] return reader.coreIndexToSeries(index);
#16 6.075 [javac] ^
#16 6.271 [javac] Note: Some input files use unchecked or unsafe operations.
#16 6.271 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 6.271 [javac] 40 warnings
#16 6.271
#16 6.271 formats-api.jar:
#16 6.272 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 6.298 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 6.335 [resolver:install] Using default POM (ome:formats-api:8.2.0-SNAPSHOT)
#16 6.338 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.pom
#16 6.341 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar
#16 6.342 [resolver:install] Installing ome:formats-api:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 6.345 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 6.346
#16 6.346 deps-turbojpeg:
#16 6.346
#16 6.346 jar-turbojpeg:
#16 6.459 [echo] isSnapshot = true
#16 6.638
#16 6.638 init-title:
#16 6.638 [echo] ----------=========== turbojpeg ===========----------
#16 6.638
#16 6.638 init-timestamp:
#16 6.639
#16 6.639 init:
#16 6.639
#16 6.639 copy-resources:
#16 6.639 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.641
#16 6.641 compile:
#16 6.652 [resolver:resolve] Resolving artifacts
#16 6.656 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.859 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 6.859 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 6.859 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 6.859 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 7.560 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 7.560 [javac] protected void finalize() throws Throwable {
#16 7.560 [javac] ^
#16 7.560 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 7.560 [javac] super.finalize();
#16 7.560 [javac] ^
#16 7.622 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 7.622 [javac] protected void finalize() throws Throwable {
#16 7.622 [javac] ^
#16 7.622 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 7.622 [javac] super.finalize();
#16 7.622 [javac] ^
#16 7.622 [javac] 8 warnings
#16 7.623
#16 7.623 jar:
#16 7.627 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 7.821 [resolver:install] Using default POM (ome:turbojpeg:8.2.0-SNAPSHOT)
#16 7.829 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.pom
#16 7.844 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar
#16 7.846 [resolver:install] Installing ome:turbojpeg:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 7.850 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 7.851
#16 7.851 deps-formats-bsd:
#16 7.851
#16 7.851 jar-formats-bsd:
#16 7.981 [echo] isSnapshot = true
#16 8.123
#16 8.123 init-title:
#16 8.124 [echo] ----------=========== formats-bsd ===========----------
#16 8.124
#16 8.124 init-timestamp:
#16 8.124
#16 8.124 init:
#16 8.124
#16 8.124 copy-resources:
#16 8.124 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.127 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.128
#16 8.128 compile:
#16 8.344 [resolver:resolve] Resolving artifacts
#16 8.373 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.682 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 8.682 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 8.682 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 8.682 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 9.887 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.887 [javac] import loci.common.ReflectedUniverse;
#16 9.887 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.29 [javac] core.size() != reader.getCoreMetadataList().size())
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.29 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.29 [javac] int n = reader.getCoreMetadataList().size();
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.29 [javac] reader.setCoreIndex(coreIndex);
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.29 [javac] int n = reader.getCoreMetadataList().size();
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.29 [javac] int n = reader.getCoreMetadataList().size();
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 10.29 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.29 [javac] int n = reader.getCoreMetadataList().size();
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 10.29 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.29 [javac] int n = reader.getCoreMetadataList().size();
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.29 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.29 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.29 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.29 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.29 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.29 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.29 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.29 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 10.29 [javac] ^
#16 10.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.29 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 10.29 [javac] ^
#16 10.49 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.49 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 10.49 [javac] ^
#16 10.49 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#16 10.49 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#16 10.49 [javac] ^
#16 10.49 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#16 10.49 [javac] URL url = new URL(urlPath);
#16 10.49 [javac] ^
#16 10.59 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.59 [javac] BitWriter out = new BitWriter();
#16 10.59 [javac] ^
#16 10.59 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 10.59 [javac] BitWriter out = new BitWriter();
#16 10.59 [javac] ^
#16 10.69 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 10.69 [javac] return new Double(v);
#16 10.69 [javac] ^
#16 11.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 11.29 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 11.29 [javac] ^
#16 11.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 11.29 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 11.29 [javac] ^
#16 11.29 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 11.29 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 11.29 [javac] ^
#16 11.39 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 11.39 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 11.39 [javac] ^
#16 11.59 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.59 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 11.59 [javac] ^
#16 11.69 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 11.69 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 11.69 [javac] ^
#16 11.79 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 11.79 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 11.79 [javac] ^
#16 11.79 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.79 [javac] protected ReflectedUniverse r;
#16 11.79 [javac] ^
#16 11.79 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 11.79 [javac] r = new ReflectedUniverse();
#16 11.79 [javac] ^
#16 11.89 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 11.89 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 11.89 [javac] ^
#16 11.89 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 11.89 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 11.89 [javac] ^
#16 11.89 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 11.89 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 11.89 [javac] ^
#16 11.89 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 11.89 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 11.89 [javac] ^
#16 11.89 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 11.89 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 11.89 [javac] ^
#16 11.89 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 11.89 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 11.89 [javac] ^
#16 11.89 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 11.89 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 11.90 [javac] ^
#16 11.90 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 11.90 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 11.90 [javac] ^
#16 11.90 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 11.90 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 11.90 [javac] ^
#16 12.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 12.00 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 12.00 [javac] ^
#16 12.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 12.00 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 12.00 [javac] ^
#16 12.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 12.00 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 12.00 [javac] ^
#16 12.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 12.00 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 12.00 [javac] ^
#16 12.00 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 12.00 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 12.00 [javac] ^
#16 12.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 12.09 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 12.09 [javac] ^
#16 12.09 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 12.09 [javac] result[i] = new Double(readNumber().doubleValue());
#16 12.09 [javac] ^
#16 12.09 [javac] Note: Some input files use unchecked or unsafe operations.
#16 12.09 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 12.09 [javac] 55 warnings
#16 12.09
#16 12.09 formats-bsd.jar:
#16 12.10 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 12.24 [resolver:install] Using default POM (ome:formats-bsd:8.2.0-SNAPSHOT)
#16 12.24 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.pom
#16 12.25 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar
#16 12.25 [resolver:install] Installing ome:formats-bsd:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 12.25 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 12.25
#16 12.25 deps-formats-gpl:
#16 12.25
#16 12.25 jar-formats-gpl:
#16 12.35 [echo] isSnapshot = true
#16 12.49
#16 12.49 init-title:
#16 12.49 [echo] ----------=========== formats-gpl ===========----------
#16 12.49
#16 12.49 init-timestamp:
#16 12.49
#16 12.49 init:
#16 12.49
#16 12.49 copy-resources:
#16 12.49 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.49 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.50
#16 12.50 compile:
#16 12.88 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 13.21 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 13.97 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 13.97 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 13.99 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 14.43 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 14.45 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 14.46 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 15.16 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 15.23 [resolver:resolve] Resolving artifacts
#16 15.25 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 15.25 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 15.29 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 15.29 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 15.49 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 15.79 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 15.81 [javac] Compiling 176 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 16.02 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 16.02 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 16.02 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 16.12 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 17.42 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.42 [javac] import loci.formats.codec.BitWriter;
#16 17.42 [javac] ^
#16 17.42 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.42 [javac] import loci.formats.codec.BitWriter;
#16 17.42 [javac] ^
#16 19.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 19.62 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 19.62 [javac] ^
#16 19.62 [javac] cast to Object for a varargs call
#16 19.62 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 19.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 19.73 [javac] BitWriter bits = null;
#16 19.73 [javac] ^
#16 19.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 19.73 [javac] bits = new BitWriter(planes[index].length / 8);
#16 19.73 [javac] ^
#16 20.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 20.13 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 20.13 [javac] ^
#16 20.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 20.43 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 20.43 [javac] ^
#16 20.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 20.43 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 20.43 [javac] ^
#16 20.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 20.73 [javac] Variable variable = group.findVariable(variableName);
#16 20.73 [javac] ^
#16 20.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 20.73 [javac] Variable variable = group.findVariable(variableName);
#16 20.73 [javac] ^
#16 20.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 20.73 [javac] List<Attribute> attributes = variable.getAttributes();
#16 20.73 [javac] ^
#16 20.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 20.73 [javac] String groupName = group.getName();
#16 20.73 [javac] ^
#16 20.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 20.73 [javac] List<Attribute> attributes = group.getAttributes();
#16 20.73 [javac] ^
#16 20.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 20.73 [javac] String variableName = variable.getName();
#16 20.73 [javac] ^
#16 20.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 20.73 [javac] Group nextParent = parent.findGroup(token);
#16 20.73 [javac] ^
#16 20.73 [javac] Note: Some input files use unchecked or unsafe operations.
#16 20.73 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 20.73 [javac] 19 warnings
#16 20.77
#16 20.77 formats-gpl.jar:
#16 20.78 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 20.95 [resolver:install] Using default POM (ome:formats-gpl:8.2.0-SNAPSHOT)
#16 20.95 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.pom
#16 20.95 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar
#16 20.96 [resolver:install] Installing ome:formats-gpl:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 20.96 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 20.96
#16 20.96 deps-bio-formats-plugins:
#16 20.96
#16 20.96 jar-bio-formats-plugins:
#16 21.07 [echo] isSnapshot = true
#16 21.21
#16 21.21 init-title:
#16 21.21 [echo] ----------=========== bio-formats_plugins ===========----------
#16 21.21
#16 21.21 init-timestamp:
#16 21.21
#16 21.21 init:
#16 21.21
#16 21.21 copy-resources:
#16 21.21 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 21.21 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 21.21
#16 21.21 compile:
#16 21.47 [resolver:resolve] Resolving artifacts
#16 21.49 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 21.80 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 21.80 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 21.80 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 21.80 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 22.60 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 22.60 [javac] import loci.common.ReflectedUniverse;
#16 22.60 [javac] ^
#16 22.60 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 22.60 [javac] import loci.common.ReflectedUniverse;
#16 22.60 [javac] ^
#16 23.10 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 23.10 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 23.10 [javac] ^
#16 23.20 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#16 23.20 [javac] URL url = new URL(urlPath);
#16 23.20 [javac] ^
#16 23.30 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 23.30 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 23.30 [javac] ^
#16 23.30 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 23.30 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 23.30 [javac] ^
#16 23.40 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 23.40 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 23.40 [javac] ^
#16 23.40 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 23.40 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 23.40 [javac] ^
#16 23.70 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#16 23.70 [javac] url = new URL(path);
#16 23.70 [javac] ^
#16 23.90 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 23.90 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 23.90 [javac] 13 warnings
#16 23.92
#16 23.92 bio-formats-plugins.jar:
#16 23.92 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 23.96 [resolver:install] Using default POM (ome:bio-formats_plugins:8.2.0-SNAPSHOT)
#16 23.96 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.pom
#16 23.98 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar
#16 23.98 [resolver:install] Installing ome:bio-formats_plugins:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 23.98 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 23.98
#16 23.98 deps-bio-formats-tools:
#16 23.98
#16 23.98 jar-bio-formats-tools:
#16 24.08 [echo] isSnapshot = true
#16 24.21
#16 24.21 init-title:
#16 24.21 [echo] ----------=========== bio-formats-tools ===========----------
#16 24.21
#16 24.21 init-timestamp:
#16 24.21
#16 24.21 init:
#16 24.21
#16 24.21 copy-resources:
#16 24.21 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 24.21
#16 24.21 compile:
#16 24.48 [resolver:resolve] Resolving artifacts
#16 24.49 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 24.69 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 24.69 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 24.69 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 24.69 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 25.89 [javac] 4 warnings
#16 25.93
#16 25.93 bio-formats-tools.jar:
#16 25.93 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 25.94 [resolver:install] Using default POM (ome:bio-formats-tools:8.2.0-SNAPSHOT)
#16 25.94 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.pom
#16 25.96 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar
#16 25.96 [resolver:install] Installing ome:bio-formats-tools:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 25.96 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 25.96
#16 25.96 deps-tests:
#16 25.96
#16 25.96 jar-tests:
#16 26.05 [echo] isSnapshot = true
#16 26.18
#16 26.18 init-title:
#16 26.18 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 26.18
#16 26.18 init-timestamp:
#16 26.18
#16 26.18 init:
#16 26.18
#16 26.18 copy-resources:
#16 26.18 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 26.19
#16 26.19 compile:
#16 26.51 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 26.58 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 26.58 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 27.00 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 27.61 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 27.62 [resolver:resolve] Resolving artifacts
#16 27.63 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 27.67 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 27.68 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 28.08 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 28.57 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 28.58 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 28.79 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 28.79 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 28.79 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 28.79 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 29.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 29.89 [javac] int index = unflattenedReader.getCoreIndex();
#16 29.89 [javac] ^
#16 29.89 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 29.89 [javac] reader.setCoreIndex(index);
#16 29.89 [javac] ^
#16 30.09 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2263: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 30.09 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 30.09 [javac] ^
#16 30.09 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2429: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 30.09 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 30.09 [javac] ^
#16 30.39 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 30.39 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 30.39 [javac] ^
#16 30.39 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 30.39 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 30.39 [javac] ^
#16 30.39 [javac] Note: Some input files use unchecked or unsafe operations.
#16 30.39 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 30.39 [javac] 10 warnings
#16 30.41
#16 30.41 tests.jar:
#16 30.41 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 30.43 [resolver:install] Using default POM (ome:test-suite:8.2.0-SNAPSHOT)
#16 30.43 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.pom
#16 30.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.jar
#16 30.43 [resolver:install] Installing ome:test-suite:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 30.44 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 30.44
#16 30.44 jars:
#16 30.44
#16 30.44 copy-jars:
#16 30.44
#16 30.44 deps-formats-api:
#16 30.49 [echo] isSnapshot = true
#16 30.53
#16 30.53 install-pom:
#16 30.70 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/pom-bio-formats-8.2.0-SNAPSHOT.pom
#16 30.70 [resolver:install] Installing ome:pom-bio-formats:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 30.70 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 30.70
#16 30.70 jar-formats-api:
#16 30.79 [echo] isSnapshot = true
#16 30.92
#16 30.92 init-title:
#16 30.92 [echo] ----------=========== formats-api ===========----------
#16 30.92
#16 30.92 init-timestamp:
#16 30.92
#16 30.92 init:
#16 30.92
#16 30.92 copy-resources:
#16 30.92
#16 30.92 compile:
#16 31.05 [resolver:resolve] Resolving artifacts
#16 31.06
#16 31.06 formats-api.jar:
#16 31.08 [resolver:install] Using default POM (ome:formats-api:8.2.0-SNAPSHOT)
#16 31.08 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.pom
#16 31.08 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar
#16 31.08 [resolver:install] Installing ome:formats-api:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 31.09 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
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#16 31.09 deps-turbojpeg:
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#16 31.31 [echo] ----------=========== turbojpeg ===========----------
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#16 31.33 [resolver:install] Using default POM (ome:turbojpeg:8.2.0-SNAPSHOT)
#16 31.34 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.pom
#16 31.34 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar
#16 31.34 [resolver:install] Installing ome:turbojpeg:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 31.34 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
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#16 31.34 deps-formats-bsd:
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#16 31.56 [echo] ----------=========== formats-bsd ===========----------
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#16 31.83 [resolver:install] Using default POM (ome:formats-bsd:8.2.0-SNAPSHOT)
#16 31.83 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.pom
#16 31.83 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar
#16 31.83 [resolver:install] Installing ome:formats-bsd:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 31.83 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
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#16 32.35 [resolver:install] Using default POM (ome:formats-gpl:8.2.0-SNAPSHOT)
#16 32.35 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.pom
#16 32.35 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar
#16 32.35 [resolver:install] Installing ome:formats-gpl:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 32.35 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
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#16 32.58 [echo] ----------=========== bio-formats_plugins ===========----------
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#16 32.88 [resolver:install] Using default POM (ome:bio-formats_plugins:8.2.0-SNAPSHOT)
#16 32.88 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.pom
#16 32.88 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar
#16 32.89 [resolver:install] Installing ome:bio-formats_plugins:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 32.89 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 32.89
#16 32.89 deps-bio-formats-tools:
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#16 32.89 jar-bio-formats-tools:
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#16 33.12
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#16 33.12 [echo] ----------=========== bio-formats-tools ===========----------
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#16 33.42 [resolver:install] Using default POM (ome:bio-formats-tools:8.2.0-SNAPSHOT)
#16 33.43 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.pom
#16 33.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar
#16 33.43 [resolver:install] Installing ome:bio-formats-tools:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 33.43 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 33.43
#16 33.43 deps-tests:
#16 33.43
#16 33.43 jar-tests:
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#16 33.72 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 33.72
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#16 33.72
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#16 33.99 tests.jar:
#16 34.00 [resolver:install] Using default POM (ome:test-suite:8.2.0-SNAPSHOT)
#16 34.00 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.pom
#16 34.00 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.jar
#16 34.00 [resolver:install] Installing ome:test-suite:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 34.01 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 34.01
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#16 34.01
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#16 34.01 [echo] ----------=========== bioformats_package ===========----------
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#16 34.49 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.53 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.26-SNAPSHOT/ome-common-6.0.26-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.56 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.59 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.60 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 34.75 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 35.03 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 39.06 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.12 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.13 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.15 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.22 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.25 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.68 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.70 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.70 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.72 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.72 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.76 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 40.24 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 40.36 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 40.87 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 48.56 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 49.38 [resolver:install] Using default POM (ome:bioformats_package:8.2.0-SNAPSHOT)
#16 49.38 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/bioformats_package-8.2.0-SNAPSHOT.pom
#16 49.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/bioformats_package-8.2.0-SNAPSHOT.jar
#16 49.43 [resolver:install] Installing ome:bioformats_package:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 49.44 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 49.44
#16 49.44 BUILD SUCCESSFUL
#16 49.44 Total time: 48 seconds
#16 DONE 50.3s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 4.1s done
#18 writing image sha256:91a4a2bc4a15b7404db499696bc7ecd7fe21c1ffe252ecb425ff80705c356ccb done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.1s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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