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#14 362.7 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/2.1/plexus-archiver-2.1.pom
#14 362.7 Progress (1): 2.8 kB
                    
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#14 362.7 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0/plexus-utils-3.0.pom
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#14 362.8 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/2.0.2/plexus-io-2.0.2.pom
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#14 362.8 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-components/1.1.19/plexus-components-1.1.19.pom
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#14 362.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/2.1/maven-dependency-tree-2.1.pom
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#14 362.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.2.0/maven-project-2.2.0.pom
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#14 362.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/2.2.0/maven-2.2.0.pom
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#14 362.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.2.0/maven-settings-2.2.0.pom
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#14 362.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.2.0/maven-model-2.2.0.pom
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#14 362.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.2.0/maven-profile-2.2.0.pom
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#14 363.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.2.0/maven-artifact-manager-2.2.0.pom
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#14 363.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/2.2.0/maven-repository-metadata-2.2.0.pom
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#14 363.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.2.0/maven-artifact-2.2.0.pom
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#14 363.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.2.0/maven-plugin-registry-2.2.0.pom
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#14 363.1 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.10/plexus-utils-3.0.10.pom
#14 363.1 Progress (1): 3.1 kB
                    
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#14 363.1 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus/3.3/plexus-3.3.pom
#14 363.1 Progress (1): 4.1/20 kB
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#14 363.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.jar
#14 363.1 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/4.3.1/org.osgi.core-4.3.1.jar
#14 363.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.7/maven-settings-2.0.7.jar
#14 363.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.7/maven-core-2.0.7.jar
#14 363.1 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/bndlib/2.3.0/bndlib-2.3.0.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.7/maven-settings-2.0.7.jar (49 kB at 1.7 MB/s)
#14 363.2 Progress (4): 175 kB | 153 kB | 0.3/1.8 MB | 53/350 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.7/maven-plugin-parameter-documenter-2.0.7.jar
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#14 363.2 Progress (4): 0.9/1.8 MB | 350 kB | 9.9 kB | 35 kB
                                                  
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#14 363.2 Progress (4): 0.9/1.8 MB | 350 kB | 9.9 kB | 35 kB
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#14 363.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.7/maven-artifact-2.0.7.jar
#14 363.2 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.jar (9.9 kB at 158 kB/s)
#14 363.2 Progress (2): 1.1/1.8 MB | 35 kB
                                
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#14 363.2 Progress (2): 1.1/1.8 MB | 35 kB
                                
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#14 363.2 Progress (1): 1.1/1.8 MB
                        
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#14 363.2 Progress (4): 1.5/1.8 MB | 88 kB | 24 kB | 14 kB
                                                
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#14 363.2 Progress (4): 1.5/1.8 MB | 88 kB | 24 kB | 14 kB
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#14 363.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.7/maven-plugin-registry-2.0.7.jar
#14 363.2 Progress (3): 1.7/1.8 MB | 88 kB | 14 kB
                                        
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#14 363.2 Progress (2): 1.7/1.8 MB | 14 kB
                                
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#14 363.2 Progress (2): 1.7/1.8 MB | 14 kB
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Progress (1): 4.6 kB    
                    
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#14 366.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-goodies/2.15.1-02/nexus-buildsupport-goodies-2.15.1-02.pom
#14 366.7 Progress (1): 4.1/4.2 kB
Progress (1): 4.2 kB    
                    
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#14 366.8 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-groovy/2.15.1-02/nexus-buildsupport-groovy-2.15.1-02.pom
#14 366.9 Progress (1): 3.1 kB
                    
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#14 367.0 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-guice/2.15.1-02/nexus-buildsupport-guice-2.15.1-02.pom
#14 367.1 Progress (1): 3.7 kB
                    
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#14 367.2 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-logging/2.15.1-02/nexus-buildsupport-logging-2.15.1-02.pom
#14 367.3 Progress (1): 3.3 kB
                    
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#14 367.4 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-osgi/2.15.1-02/nexus-buildsupport-osgi-2.15.1-02.pom
#14 367.5 Progress (1): 2.0 kB
                    
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#14 367.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-other/2.15.1-02/nexus-buildsupport-other-2.15.1-02.pom
#14 367.7 Progress (1): 4.1/7.3 kB
Progress (1): 7.3 kB    
                    
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#14 367.8 Downloading from rso-public-grid: https://repo
#14 367.8 [output clipped, log limit 2MiB reached]
#14 436.6 SLF4J: No SLF4J providers were found.
#14 436.6 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 436.6 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 445.4s

#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s

#16 [12/13] RUN ant jars tools
#16 0.424 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.809      [echo] isSnapshot = true
#16 0.915 
#16 0.915 copy-jars:
#16 0.915 
#16 0.915 deps-formats-api:
#16 0.998      [echo] isSnapshot = true
#16 1.059 
#16 1.059 install-pom:
#16 1.263 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 1.279 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 1.284 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.285 
#16 1.285 jar-formats-api:
#16 1.398      [echo] isSnapshot = true
#16 1.582 
#16 1.582 init-title:
#16 1.582      [echo] ----------=========== formats-api ===========----------
#16 1.583 
#16 1.583 init-timestamp:
#16 1.587 
#16 1.587 init:
#16 1.587 
#16 1.587 copy-resources:
#16 1.588     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.603      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.605 
#16 1.605 compile:
#16 1.792 [resolver:resolve] Resolving artifacts
#16 1.820     [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.502     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.502     [javac] import loci.common.ReflectedUniverse;
#16 2.502     [javac]                   ^
#16 2.603     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.603     [javac]     int currentIndex = r.getCoreIndex();
#16 2.603     [javac]                         ^
#16 2.603     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.603     [javac]     r.setCoreIndex(coreIndex);
#16 2.603     [javac]      ^
#16 2.603     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.603     [javac]     r.setCoreIndex(currentIndex);
#16 2.603     [javac]      ^
#16 2.804     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.804     [javac]   public void setCoreIndex(int no) {
#16 2.804     [javac]               ^
#16 2.804     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.804     [javac]   public int getCoreIndex() {
#16 2.804     [javac]              ^
#16 2.804     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 2.804     [javac]   public int coreIndexToSeries(int index)
#16 2.804     [javac]              ^
#16 2.804     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 2.805     [javac]   public int seriesToCoreIndex(int series)
#16 2.805     [javac]              ^
#16 2.805     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.805     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 2.805     [javac]                             ^
#16 2.905     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.905     [javac]     if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 2.905     [javac]                                              ^
#16 2.905     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.905     [javac]     if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 2.906     [javac]                                              ^
#16 2.906     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.906     [javac]       core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 2.906     [javac]                                                      ^
#16 2.906     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.906     [javac]       core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 2.906     [javac]                                                      ^
#16 3.006     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.006     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 3.006     [javac]     ^
#16 3.007     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.007     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 3.007     [javac]                               ^
#16 3.007     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.007     [javac]   public void setCoreIndex(int no) {
#16 3.007     [javac]               ^
#16 3.007     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.007     [javac]   public int getCoreIndex() {
#16 3.007     [javac]              ^
#16 3.007     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.007     [javac]   public int coreIndexToSeries(int index) {
#16 3.007     [javac]              ^
#16 3.008     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.008     [javac]   public int seriesToCoreIndex(int series) {
#16 3.008     [javac]              ^
#16 3.008     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.008     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 3.008     [javac]                             ^
#16 3.008     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:589: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.008     [javac]     return getReader().getCoreMetadataList();
#16 3.008     [javac]                       ^
#16 3.008     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:769: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.008     [javac]     return getReader().getCoreIndex();
#16 3.008     [javac]                       ^
#16 3.008     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:775: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.008     [javac]     getReader().setCoreIndex(no);
#16 3.008     [javac]                ^
#16 3.008     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:780: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.009     [javac]     return getReader().seriesToCoreIndex(series);
#16 3.009     [javac]                       ^
#16 3.009     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.009     [javac]     return getReader().coreIndexToSeries(index);
#16 3.009     [javac]                       ^
#16 3.109     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.109     [javac]   public void setCoreIndex(int no) {
#16 3.109     [javac]               ^
#16 3.109     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.109     [javac]   public int getCoreIndex() {
#16 3.109     [javac]              ^
#16 3.109     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.109     [javac]   public int coreIndexToSeries(int index) {
#16 3.109     [javac]              ^
#16 3.109     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.109     [javac]   public int seriesToCoreIndex(int series) {
#16 3.109     [javac]              ^
#16 3.109     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.110     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 3.110     [javac]                             ^
#16 3.110     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.110     [javac]     List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.110     [javac]                                        ^
#16 3.110     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.110     [javac]     return reader.getCoreIndex();
#16 3.110     [javac]                  ^
#16 3.110     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.110     [javac]     reader.setCoreIndex(no);
#16 3.110     [javac]           ^
#16 3.110     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.110     [javac]     return reader.seriesToCoreIndex(series);
#16 3.110     [javac]                  ^
#16 3.110     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.110     [javac]     return reader.coreIndexToSeries(index);
#16 3.110     [javac]                  ^
#16 3.311     [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.311     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.311     [javac] 35 warnings
#16 3.329 
#16 3.329 formats-api.jar:
#16 3.329     [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.355       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.388 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 3.392 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 3.408 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 3.409 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 3.411 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.412 
#16 3.412 deps-turbojpeg:
#16 3.412 
#16 3.412 jar-turbojpeg:
#16 3.522      [echo] isSnapshot = true
#16 3.690 
#16 3.690 init-title:
#16 3.690      [echo] ----------=========== turbojpeg ===========----------
#16 3.690 
#16 3.690 init-timestamp:
#16 3.690 
#16 3.690 init:
#16 3.690 
#16 3.690 copy-resources:
#16 3.691     [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 3.692 
#16 3.692 compile:
#16 3.702 [resolver:resolve] Resolving artifacts
#16 3.706     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.464 
#16 4.464 jar:
#16 4.469       [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 4.657 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 4.665 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 4.674 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 4.676 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.680 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 4.681 
#16 4.681 deps-formats-bsd:
#16 4.681 
#16 4.681 jar-formats-bsd:
#16 4.781      [echo] isSnapshot = true
#16 4.951 
#16 4.951 init-title:
#16 4.951      [echo] ----------=========== formats-bsd ===========----------
#16 4.952 
#16 4.952 init-timestamp:
#16 4.952 
#16 4.952 init:
#16 4.952 
#16 4.952 copy-resources:
#16 4.952     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 4.955      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 4.956 
#16 4.956 compile:
#16 5.166 [resolver:resolve] Resolving artifacts
#16 5.200     [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.310     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.310     [javac] import loci.common.ReflectedUniverse;
#16 6.310     [javac]                   ^
#16 6.611     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.611     [javac]       core.size() != reader.getCoreMetadataList().size())
#16 6.611     [javac]                            ^
#16 6.611     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.611     [javac]       List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.611     [javac]                                          ^
#16 6.611     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.611     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.611     [javac]                   ^
#16 6.611     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.611     [javac]     reader.setCoreIndex(coreIndex);
#16 6.611     [javac]           ^
#16 6.611     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.611     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.611     [javac]                   ^
#16 6.611     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.611     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.611     [javac]                   ^
#16 6.611     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.611     [javac]     if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 6.611     [javac]                                         ^
#16 6.611     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.611     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.611     [javac]                   ^
#16 6.611     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.611     [javac]     if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 6.611     [javac]                                         ^
#16 6.611     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.611     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.612     [javac]                   ^
#16 6.612     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.612     [javac]     if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 6.612     [javac]                                  ^
#16 6.612     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.612     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.612     [javac]                  ^
#16 6.612     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.612     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.612     [javac]                                              ^
#16 6.612     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.612     [javac]     return noStitch ? reader.getCoreMetadataList() : core;
#16 6.612     [javac]                             ^
#16 6.612     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.612     [javac]     if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 6.612     [javac]               ^
#16 6.612     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.612     [javac]       seriesCount = reader.getCoreMetadataList().size();
#16 6.612     [javac]                           ^
#16 6.612     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.612     [javac]       if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 6.612     [javac]                 ^
#16 6.612     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.612     [javac]     if (reader.getCoreMetadataList().size() > 1) return 0;
#16 6.612     [javac]               ^
#16 6.713     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.713     [javac]       r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 6.713     [javac]                            ^
#16 6.813     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.813     [javac]     int seriesCount = unwrap().getCoreMetadataList().size();
#16 6.813     [javac]                               ^
#16 6.913     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 6.913     [javac]     BitWriter out = new BitWriter();
#16 6.913     [javac]     ^
#16 6.913     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 6.913     [javac]     BitWriter out = new BitWriter();
#16 6.913     [javac]                         ^
#16 7.814     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.814     [javac]       OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 7.814     [javac]                                                                    ^
#16 7.814     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 7.814     [javac]     StreamTokenizer st = new StreamTokenizer(in);
#16 7.814     [javac]                          ^
#16 7.915     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.915     [javac]     core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 7.915     [javac]                                                    ^
#16 7.915     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.915     [javac]   protected ReflectedUniverse r;
#16 7.915     [javac]             ^
#16 7.915     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.915     [javac]       r = new ReflectedUniverse();
#16 7.915     [javac]               ^
#16 8.015     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 8.015     [javac]           wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 8.015     [javac]                                                                               ^
#16 8.015     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 8.015     [javac]           sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 8.015     [javac]                                                                                ^
#16 8.015     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 8.015     [javac]         String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 8.015     [javac]                                                                                   ^
#16 8.015     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 8.015     [javac]         String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 8.015     [javac]                                                                                   ^
#16 8.015     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 8.015     [javac]         volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 8.015     [javac]                                                                                        ^
#16 8.015     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 8.015     [javac]         volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 8.015     [javac]                                                                                         ^
#16 8.015     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 8.015     [javac]         volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 8.016     [javac]                                                                                        ^
#16 8.016     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 8.016     [javac]             offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 8.016     [javac]                                                                                                               ^
#16 8.016     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 8.016     [javac]             offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 8.016     [javac]                                                                                                               ^
#16 8.116     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 8.116     [javac]       libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 8.116     [javac]                                        ^
#16 8.116     [javac] Note: Some input files use unchecked or unsafe operations.
#16 8.116     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 8.116     [javac] 38 warnings
#16 8.218 
#16 8.218 formats-bsd.jar:
#16 8.228       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 8.338 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 8.342 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 8.350 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 8.352 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 8.354 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 8.355 
#16 8.355 deps-formats-gpl:
#16 8.355 
#16 8.355 jar-formats-gpl:
#16 8.453      [echo] isSnapshot = true
#16 8.623 
#16 8.623 init-title:
#16 8.623      [echo] ----------=========== formats-gpl ===========----------
#16 8.623 
#16 8.623 init-timestamp:
#16 8.623 
#16 8.623 init:
#16 8.623 
#16 8.623 copy-resources:
#16 8.624     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.625      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.625 
#16 8.625 compile:
#16 9.093 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 9.339 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 9.380 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 9.952 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 9.956 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 9.970 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 9.992 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.13 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 10.18 [resolver:resolve] Resolving artifacts
#16 10.19 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.19 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 10.23 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.23 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 10.26 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.26 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 10.67 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 10.67 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 10.69     [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.80     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.80     [javac] import loci.formats.codec.BitWriter;
#16 11.80     [javac]                          ^
#16 11.90     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.90     [javac] import loci.formats.codec.BitWriter;
#16 11.90     [javac]                          ^
#16 13.70     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 13.70     [javac]       LOGGER.trace("Parsing tokens: {}", tokens);
#16 13.70     [javac]                                          ^
#16 13.70     [javac]   cast to Object for a varargs call
#16 13.70     [javac]   cast to Object[] for a non-varargs call and to suppress this warning
#16 13.70     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaSCNReader.java:398: warning: [deprecation] NM in UNITS has been deprecated
#16 13.70     [javac]         final Length offsetX = new Length(i.vOffsetX, UNITS.NM);
#16 13.70     [javac]                                                            ^
#16 13.70     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaSCNReader.java:399: warning: [deprecation] NM in UNITS has been deprecated
#16 13.70     [javac]         final Length offsetY = new Length(i.vOffsetY, UNITS.NM);
#16 13.70     [javac]                                                            ^
#16 13.80     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.80     [javac]     BitWriter bits = null;
#16 13.80     [javac]     ^
#16 13.80     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.80     [javac]       bits = new BitWriter(planes[index].length / 8);
#16 13.80     [javac]                  ^
#16 13.90     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/SVSReader.java:692: warning: [deprecation] MM in UNITS has been deprecated
#16 13.90     [javac]           Length yPos = FormatTools.getStagePosition(physicalDistanceFromTopEdge, UNITS.MM);
#16 13.90     [javac]                                                                                        ^
#16 13.90     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/SVSReader.java:698: warning: [deprecation] MM in UNITS has been deprecated
#16 13.90     [javac]           Length xPos = FormatTools.getStagePosition(physicalDistanceFromLeftEdge, UNITS.MM);
#16 13.90     [javac]                                                                                         ^
#16 14.00     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 14.00     [javac]     CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 14.00     [javac]                                                    ^
#16 14.00     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:298: warning: [deprecation] NM in UNITS has been deprecated
#16 14.00     [javac]           int actualWidth = (int) (stitchedWidth / physicalSizeX.value(UNITS.NM).doubleValue());
#16 14.00     [javac]                                                                             ^
#16 14.10     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:299: warning: [deprecation] NM in UNITS has been deprecated
#16 14.10     [javac]           int actualHeight = (int) (stitchedHeight / physicalSizeY.value(UNITS.NM).doubleValue());
#16 14.10     [javac]                                                                               ^
#16 14.10     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OperettaReader.java:1202: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#16 14.10     [javac]   protected AcquisitionMode getAcquisitionMode(String mode) throws FormatException {
#16 14.10     [javac]                             ^
#16 14.40     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.40     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.40     [javac]     ^
#16 14.40     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.40     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.40     [javac]                          ^
#16 14.60     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 14.60     [javac]       List<Attribute> attributes = variable.getAttributes();
#16 14.60     [javac]                                            ^
#16 14.60     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.60     [javac]         toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 14.60     [javac]                               ^
#16 14.60     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.60     [javac]       String groupName = group.getName();
#16 14.60     [javac]                               ^
#16 14.60     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 14.60     [javac]       List<Attribute> attributes = group.getAttributes();
#16 14.60     [javac]                                         ^
#16 14.60     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.60     [javac]         String attributeName = attribute.getName();
#16 14.60     [javac]                                         ^
#16 14.60     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.60     [javac]         String variableName = variable.getName();
#16 14.60     [javac]                                       ^
#16 14.65     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 14.65     [javac]     netCDFFile = NetcdfFile.open(currentId);
#16 14.65     [javac]                            ^
#16 14.65     [javac] Note: Some input files use unchecked or unsafe operations.
#16 14.65     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 14.65     [javac] 22 warnings
#16 14.65 
#16 14.65 formats-gpl.jar:
#16 14.65       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 14.80 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 14.80 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 15.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 15.22 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 15.22 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 15.22 
#16 15.22 deps-bio-formats-plugins:
#16 15.22 
#16 15.22 jar-bio-formats-plugins:
#16 15.32      [echo] isSnapshot = true
#16 15.50 
#16 15.50 init-title:
#16 15.50      [echo] ----------=========== bio-formats_plugins ===========----------
#16 15.50 
#16 15.50 init-timestamp:
#16 15.50 
#16 15.50 init:
#16 15.50 
#16 15.50 copy-resources:
#16 15.50     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.50      [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.50 
#16 15.50 compile:
#16 15.76 [resolver:resolve] Resolving artifacts
#16 15.77     [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.58     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.58     [javac] import loci.common.ReflectedUniverse;
#16 16.58     [javac]                   ^
#16 16.58     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.58     [javac] import loci.common.ReflectedUniverse;
#16 16.58     [javac]                   ^
#16 16.98     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 16.98     [javac]     "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 16.98     [javac]                                      ^
#16 17.18     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.18     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 17.18     [javac]         ^
#16 17.18     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.18     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 17.18     [javac]                                   ^
#16 17.28     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.28     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 17.28     [javac]     ^
#16 17.28     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.28     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 17.28     [javac]                                ^
#16 17.57     [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 17.57     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.57     [javac] 7 warnings
#16 17.57 
#16 17.57 bio-formats-plugins.jar:
#16 17.58       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 17.61 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 17.62 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 17.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 17.63 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 17.63 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 17.63 
#16 17.63 deps-bio-formats-tools:
#16 17.63 
#16 17.63 jar-bio-formats-tools:
#16 17.74      [echo] isSnapshot = true
#16 17.90 
#16 17.90 init-title:
#16 17.90      [echo] ----------=========== bio-formats-tools ===========----------
#16 17.90 
#16 17.90 init-timestamp:
#16 17.90 
#16 17.90 init:
#16 17.90 
#16 17.90 copy-resources:
#16 17.90     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 17.90 
#16 17.90 compile:
#16 18.16 [resolver:resolve] Resolving artifacts
#16 18.17     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.21 
#16 19.21 bio-formats-tools.jar:
#16 19.21       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 19.22 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 19.23 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 19.25 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 19.25 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 19.25 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 19.25 
#16 19.25 deps-tests:
#16 19.25 
#16 19.25 jar-tests:
#16 19.35      [echo] isSnapshot = true
#16 19.53 
#16 19.53 init-title:
#16 19.53      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 19.53 
#16 19.53 init-timestamp:
#16 19.53 
#16 19.53 init:
#16 19.53 
#16 19.53 copy-resources:
#16 19.53     [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 19.53 
#16 19.53 compile:
#16 19.89 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.98 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.00 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.41 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.84 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 20.86 [resolver:resolve] Resolving artifacts
#16 20.87 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.91 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.93 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.34 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.72 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 21.73     [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.65     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.65     [javac]         int index = unflattenedReader.getCoreIndex();
#16 22.65     [javac]                                      ^
#16 22.65     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 22.65     [javac]         reader.setCoreIndex(index);
#16 22.65     [javac]               ^
#16 22.95     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.95     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 22.95     [javac]                                              ^
#16 22.95     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.95     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 22.95     [javac]                                              ^
#16 23.15     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 23.15     [javac]         FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 23.15     [javac]                                                    ^
#16 23.15     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 23.15     [javac]         FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 23.15     [javac]                                                    ^
#16 23.24     [javac] Note: Some input files use unchecked or unsafe operations.
#16 23.24     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 23.24     [javac] 6 warnings
#16 23.24 
#16 23.24 tests.jar:
#16 23.25       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 23.26 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 23.27 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 23.27 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 23.27 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 23.28 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 23.28 
#16 23.28 jars:
#16 23.28 
#16 23.28 copy-jars:
#16 23.28 
#16 23.28 deps-formats-api:
#16 23.33      [echo] isSnapshot = true
#16 23.38 
#16 23.38 install-pom:
#16 23.55 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 23.56 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 23.56 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 23.56 
#16 23.56 jar-formats-api:
#16 23.65      [echo] isSnapshot = true
#16 23.83 
#16 23.83 init-title:
#16 23.83      [echo] ----------=========== formats-api ===========----------
#16 23.83 
#16 23.83 init-timestamp:
#16 23.83 
#16 23.83 init:
#16 23.83 
#16 23.83 copy-resources:
#16 23.83 
#16 23.83 compile:
#16 23.99 [resolver:resolve] Resolving artifacts
#16 24.00 
#16 24.00 formats-api.jar:
#16 24.02 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 24.02 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 24.03 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 24.03 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.03 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 24.03 
#16 24.03 deps-turbojpeg:
#16 24.03 
#16 24.03 jar-turbojpeg:
#16 24.32      [echo] isSnapshot = true
#16 24.49 
#16 24.49 init-title:
#16 24.49      [echo] ----------=========== turbojpeg ===========----------
#16 24.49 
#16 24.49 init-timestamp:
#16 24.49 
#16 24.49 init:
#16 24.49 
#16 24.49 copy-resources:
#16 24.49 
#16 24.49 compile:
#16 24.50 [resolver:resolve] Resolving artifacts
#16 24.50 
#16 24.50 jar:
#16 24.51 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 24.52 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 24.52 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 24.52 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.52 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 24.52 
#16 24.52 deps-formats-bsd:
#16 24.52 
#16 24.52 jar-formats-bsd:
#16 24.61      [echo] isSnapshot = true
#16 24.77 
#16 24.77 init-title:
#16 24.77      [echo] ----------=========== formats-bsd ===========----------
#16 24.77 
#16 24.77 init-timestamp:
#16 24.77 
#16 24.77 init:
#16 24.77 
#16 24.77 copy-resources:
#16 24.78 
#16 24.78 compile:
#16 24.98 [resolver:resolve] Resolving artifacts
#16 25.00 
#16 25.00 formats-bsd.jar:
#16 25.03 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 25.03 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 25.04 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 25.04 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.04 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 25.04 
#16 25.04 deps-formats-gpl:
#16 25.04 
#16 25.04 jar-formats-gpl:
#16 25.13      [echo] isSnapshot = true
#16 25.30 
#16 25.30 init-title:
#16 25.30      [echo] ----------=========== formats-gpl ===========----------
#16 25.30 
#16 25.30 init-timestamp:
#16 25.30 
#16 25.30 init:
#16 25.30 
#16 25.30 copy-resources:
#16 25.30 
#16 25.30 compile:
#16 25.54 [resolver:resolve] Resolving artifacts
#16 25.56 
#16 25.56 formats-gpl.jar:
#16 25.60 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 25.61 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 25.61 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 25.61 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.61 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 25.61 
#16 25.61 deps-bio-formats-plugins:
#16 25.61 
#16 25.61 jar-bio-formats-plugins:
#16 25.71      [echo] isSnapshot = true
#16 25.89 
#16 25.89 init-title:
#16 25.89      [echo] ----------=========== bio-formats_plugins ===========----------
#16 25.89 
#16 25.89 init-timestamp:
#16 25.89 
#16 25.89 init:
#16 25.89 
#16 25.89 copy-resources:
#16 25.89 
#16 25.89 compile:
#16 26.16 [resolver:resolve] Resolving artifacts
#16 26.17 
#16 26.17 bio-formats-plugins.jar:
#16 26.19 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 26.19 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 26.19 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 26.19 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.20 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 26.20 
#16 26.20 deps-bio-formats-tools:
#16 26.20 
#16 26.20 jar-bio-formats-tools:
#16 26.30      [echo] isSnapshot = true
#16 26.47 
#16 26.47 init-title:
#16 26.47      [echo] ----------=========== bio-formats-tools ===========----------
#16 26.47 
#16 26.47 init-timestamp:
#16 26.47 
#16 26.47 init:
#16 26.47 
#16 26.47 copy-resources:
#16 26.48 
#16 26.48 compile:
#16 26.72 [resolver:resolve] Resolving artifacts
#16 26.73 
#16 26.73 bio-formats-tools.jar:
#16 26.73 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 26.73 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 26.73 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 26.74 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.74 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 26.74 
#16 26.74 deps-tests:
#16 26.74 
#16 26.74 jar-tests:
#16 26.83      [echo] isSnapshot = true
#16 27.00 
#16 27.00 init-title:
#16 27.00      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 27.00 
#16 27.00 init-timestamp:
#16 27.00 
#16 27.00 init:
#16 27.00 
#16 27.00 copy-resources:
#16 27.00 
#16 27.00 compile:
#16 27.26 [resolver:resolve] Resolving artifacts
#16 27.27 
#16 27.27 tests.jar:
#16 27.28 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 27.28 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 27.29 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 27.29 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.29 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 27.29 
#16 27.29 jars:
#16 27.29 
#16 27.29 tools:
#16 27.29      [echo] ----------=========== bioformats_package ===========----------
#16 27.39      [echo] isSnapshot = true
#16 27.57 
#16 27.57 init-timestamp:
#16 27.57 
#16 27.57 bundle:
#16 27.85 [resolver:resolve] Resolving artifacts
#16 27.87     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.90     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.22-SNAPSHOT/ome-common-6.0.22-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.92     [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.95     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.96     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.02     [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.04     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.10     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.11     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.35     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.41     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.43     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.49     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.50     [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.51     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.52     [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.71     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.23     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.23     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.24     [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.24     [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.33     [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.34     [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.35     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.5-SNAPSHOT/ome-xml-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.41     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.5-SNAPSHOT/specification-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.47     [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.48     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.2-SNAPSHOT/ome-codecs-1.0.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.49     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.3-SNAPSHOT/ome-jai-0.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.65     [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.67     [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.75     [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.79     [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.79     [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.83     [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.85     [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.31     [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.34     [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.37     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.45     [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.63     [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.64     [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.66     [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.67     [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.91     [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.99     [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.05     [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.3-SNAPSHOT/ome-mdbtools-5.3.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.17     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.7-SNAPSHOT/metakit-5.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.17     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.9-SNAPSHOT/ome-poi-5.3.9-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.31     [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.32     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.77     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.78     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.90     [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.96     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.96     [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.98     [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.14     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.15     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.16     [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.17     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.18     [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.21     [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.66     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.78     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.09       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 38.95    [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.64 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 39.64 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 39.65 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 39.69 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 39.69 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 39.69 
#16 39.69 BUILD SUCCESSFUL
#16 39.69 Total time: 39 seconds
#16 DONE 39.8s

#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s

#18 exporting to image
#18 exporting layers
#18 exporting layers 3.2s done
#18 writing image sha256:7cf6d28bedd7255d4ef5987e502022040c9dc13e51b85a0c53d6659ab732ed4e done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.2s
Finished: SUCCESS