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#14 139.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-bsd' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 139.3 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-bsd
#14 139.3 [INFO] Storing buildNumber: 0ca2998f3babc886ada1924b8bcbbeab291dcc25 at timestamp: 1756599068447
#14 139.3 [WARNING] Cannot get the branch information from the git repository: 
#14 139.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 139.3 
#14 139.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-bsd' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 139.3 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-bsd
#14 139.3 [INFO] Storing buildScmBranch: UNKNOWN
#14 139.3 [INFO] 
#14 139.3 [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ formats-bsd ---
#14 139.3 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 139.3 [INFO] Copying 1 resource
#14 139.4 [INFO] Copying 0 resource
#14 139.4 [INFO] 
#14 139.4 [INFO] --- maven-compiler-plugin:3.14.0:compile (default-compile) @ formats-bsd ---
#14 139.4 [INFO] Recompiling the module because of changed dependency.
#14 139.4 [INFO] Compiling 177 source files with javac [debug release 8] to target/classes
#14 140.8 [INFO] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java: Some input files use or override a deprecated API.
#14 140.9 [INFO] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java: Recompile with -Xlint:deprecation for details.
#14 140.9 [INFO] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/cache/CacheStrategy.java: Some input files use unchecked or unsafe operations.
#14 140.9 [INFO] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/cache/CacheStrategy.java: Recompile with -Xlint:unchecked for details.
#14 140.9 [INFO] 
#14 140.9 [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ formats-bsd ---
#14 140.9 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 140.9 [INFO] Copying 10 resources
#14 140.9 [INFO] 
#14 140.9 [INFO] --- maven-compiler-plugin:3.14.0:testCompile (default-testCompile) @ formats-bsd ---
#14 140.9 [INFO] Recompiling the module because of changed dependency.
#14 140.9 [INFO] Compiling 75 source files with javac [debug release 8] to target/test-classes
#14 141.3 [WARNING] /bio-formats-build/bioformats/components/formats-bsd/test/loci/formats/utests/FileStitcherTest.java:[220,51] non-varargs call of varargs method with inexact argument type for last parameter;
#14 141.3   cast to java.lang.Object for a varargs call
#14 141.3   cast to java.lang.Object[] for a non-varargs call and to suppress this warning
#14 141.3 [INFO] /bio-formats-build/bioformats/components/formats-bsd/test/loci/formats/utests/CompressDecompressTest.java: Some input files use or override a deprecated API.
#14 141.3 [INFO] /bio-formats-build/bioformats/components/formats-bsd/test/loci/formats/utests/CompressDecompressTest.java: Recompile with -Xlint:deprecation for details.
#14 141.3 [INFO] /bio-formats-build/bioformats/components/formats-bsd/test/loci/formats/utests/FileStitcherTest.java: Some input files use unchecked or unsafe operations.
#14 141.3 [INFO] /bio-formats-build/bioformats/components/formats-bsd/test/loci/formats/utests/FileStitcherTest.java: Recompile with -Xlint:unchecked for details.
#14 141.3 [INFO] 
#14 141.3 [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ formats-bsd ---
#14 141.3 [INFO] 
#14 141.3 [INFO] -------------------------------------------------------
#14 141.3 [INFO]  T E S T S
#14 141.3 [INFO] -------------------------------------------------------
#14 141.5 [INFO] Running TestSuite
#14 141.7 SLF4J: No SLF4J providers were found.
#14 141.7 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 141.7 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 318.5 [INFO] Tests run: 1468, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 177.024 s - in TestSuite
#14 319.2 [INFO] 
#14 319.2 [INFO] Results:
#14 319.2 [INFO] 
#14 319.2 [INFO] Tests run: 1468, Failures: 0, Errors: 0, Skipped: 0
#14 319.2 [INFO] 
#14 319.2 [INFO] 
#14 319.2 [INFO] --- maven-surefire-plugin:2.22.0:test (test-no-hdf) @ formats-bsd ---
#14 319.2 [INFO] 
#14 319.2 [INFO] -------------------------------------------------------
#14 319.2 [INFO]  T E S T S
#14 319.2 [INFO] -------------------------------------------------------
#14 319.3 [INFO] Running TestSuite
#14 319.5 SLF4J: No SLF4J providers were found.
#14 319.5 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 319.5 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 319.6 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.289 s - in TestSuite
#14 319.9 [INFO] 
#14 319.9 [INFO] Results:
#14 319.9 [INFO] 
#14 319.9 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
#14 319.9 [INFO] 
#14 319.9 [INFO] 
#14 319.9 [INFO] --- maven-jar-plugin:3.1.0:jar (default-jar) @ formats-bsd ---
#14 320.0 [INFO] Building jar: /bio-formats-build/bioformats/components/formats-bsd/target/formats-bsd-8.4.0-SNAPSHOT.jar
#14 320.0 [INFO] 
#14 320.0 [INFO] >>> maven-source-plugin:3.0.1:jar (default) > generate-sources @ formats-bsd >>>
#14 320.0 [INFO] 
#14 320.0 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ formats-bsd ---
#14 320.0 [INFO] 
#14 320.0 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ formats-bsd ---
#14 320.0 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-bsd' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 320.0 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-bsd
#14 320.0 [INFO] Storing buildNumber: 0ca2998f3babc886ada1924b8bcbbeab291dcc25 at timestamp: 1756599249131
#14 320.0 [WARNING] Cannot get the branch information from the git repository: 
#14 320.0 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 320.0 
#14 320.0 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-bsd' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 320.0 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-bsd
#14 320.0 [INFO] Storing buildScmBranch: UNKNOWN
#14 320.0 [INFO] 
#14 320.0 [INFO] <<< maven-source-plugin:3.0.1:jar (default) < generate-sources @ formats-bsd <<<
#14 320.0 [INFO] 
#14 320.0 [INFO] 
#14 320.0 [INFO] --- maven-source-plugin:3.0.1:jar (default) @ formats-bsd ---
#14 320.1 [INFO] Building jar: /bio-formats-build/bioformats/components/formats-bsd/target/formats-bsd-8.4.0-SNAPSHOT-sources.jar
#14 320.1 [INFO] 
#14 320.1 [INFO] --- maven-jar-plugin:3.1.0:test-jar (default) @ formats-bsd ---
#14 320.1 [INFO] Building jar: /bio-formats-build/bioformats/components/formats-bsd/target/formats-bsd-8.4.0-SNAPSHOT-tests.jar
#14 320.1 [INFO] 
#14 320.1 [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ formats-bsd ---
#14 320.1 [INFO] Installing /bio-formats-build/bioformats/components/formats-bsd/target/formats-bsd-8.4.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#14 320.1 [INFO] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#14 320.1 [INFO] Installing /bio-formats-build/bioformats/components/formats-bsd/target/formats-bsd-8.4.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT-sources.jar
#14 320.1 [INFO] Installing /bio-formats-build/bioformats/components/formats-bsd/target/formats-bsd-8.4.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT-tests.jar
#14 320.1 [INFO] 
#14 320.1 [INFO] --------------------------< ome:formats-gpl >---------------------------
#14 320.1 [INFO] Building Bio-Formats library 8.4.0-SNAPSHOT                      [16/24]
#14 320.1 [INFO] --------------------------------[ jar ]---------------------------------
#14 320.1 Downloading from central: https://repo.maven.apache.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#14 320.3 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#14 321.2 Progress (1): 2.4 kB
                    
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#14 321.3 Downloading from central: https://repo.maven.apache.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#14 321.5 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#14 321.6 Progress (1): 4.1/6.2 kB
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#14 321.7 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/software/amazon/awssdk/bom/2.17.290/bom-2.17.290.pom
#14 321.9 Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/software/amazon/awssdk/bom/2.17.290/bom-2.17.290.pom
#14 322.0 Progress (1): 4.1/77 kB
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#14 322.2 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/software/amazon/awssdk/aws-sdk-java-pom/2.17.290/aws-sdk-java-pom-2.17.290.pom
#14 322.6 Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/software/amazon/awssdk/aws-sdk-java-pom/2.17.290/aws-sdk-java-pom-2.17.290.pom
#14 322.7 Progress (1): 4.1/72 kB
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#14 322.8 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/com/fasterxml/jackson/jackson-bom/2.16.1/jackson-bom-2.16.1.pom
#14 323.3 Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/com/fasterxml/jackson/jackson-bom/2.16.1/jackson-bom-2.16.1.pom
#14 323.4 Progress (1): 4.1/18 kB
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#14 323.4 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/com/fasterxml/jackson/jackson-parent/2.16/jackson-parent-2.16.pom
#14 323.9 Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/com/fasterxml/jackson/jackson-parent/2.16/jackson-parent-2.16.pom
#14 324.0 Progress (1): 4.1/6.3 kB
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#14 324.1 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/com/fasterxml/oss-parent/56/oss-parent-56.pom
#14 324.5 Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/com/fasterxml/oss-parent/56/oss-parent-56.pom
#14 324.6 Progress (1): 4.1/24 kB
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#14 324.7 Downloading from central: https://repo.maven.apache.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#14 324.8 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#14 325.2 Progress (1): 1.6 kB
                    
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#14 325.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.pom
#14 325.3 Progress (1): 4.1/6.6 kB
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#14 325.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpcomponents-client/4.5.13/httpcomponents-client-4.5.13.pom
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#14 325.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.pom
#14 325.4 Progress (1): 4.1/5.2 kB
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#14 325.4 Downloading from central: https://repo.maven.apache.org/maven2/com/google/re2j/re2j/1.3/re2j-1.3.pom
#14 325.4 Progress (1): 933 B
                   
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#14 325.4 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.7.28/slf4j-api-1.7.28.pom
#14 325.5 Progress (1): 3.8 kB
                    
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#14 325.5 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-parent/1.7.28/slf4j-parent-1.7.28.pom
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#14 325.5 Downloading from central: https://repo.maven.apache.org/maven2/commons-math/commons-math/1.2/commons-math-1.2.pom
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#14 325.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-parent/7/commons-parent-7.pom
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#14 325.6 Downloading from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.pom
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#14 325.7 Downloading from central: https://repo.maven.apache.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#14 325.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar
#14 325.7 Downloading from central: https://repo.maven.apache.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
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#14 325.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar
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#14 325.8 Progress (2): 171/780 kB | 121 kB
                                 
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#14 325.8 Progress (2): 175/780 kB | 121 kB
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#14 325.8 Progress (1): 343/780 kB
                        
Downloading from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar
#14 325.8 Progress (1): 347/780 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar (780 kB at 5.8 MB/s)
#14 325.8 Progress (2): 338 kB | 0.4/14 MB
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#14 325.8 Progress (1): 0.7/14 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar (14 MB at 20 MB/s)
#14 326.4 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#14 326.4 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#14 326.7 Progress (1): 0/4.3 MB
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (80 kB at 36 kB/s)
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (4.3 MB at 1.5 MB/s)
#14 329.2 [INFO] 
#14 329.2 [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ formats-gpl ---
#14 329.2 [INFO] 
#14 329.2 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ formats-gpl ---
#14 329.2 [INFO] 
#14 329.2 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ formats-gpl ---
#14 329.2 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 329.2 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 329.3 [INFO] Storing buildNumber: 0ca2998f3babc886ada1924b8bcbbeab291dcc25 at timestamp: 1756599258365
#14 329.3 [WARNING] Cannot get the branch information from the git repository: 
#14 329.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 329.3 
#14 329.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 329.3 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 329.3 [INFO] Storing buildScmBranch: UNKNOWN
#14 329.3 [INFO] 
#14 329.3 [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ formats-gpl ---
#14 329.3 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 329.3 [INFO] Copying 2 resources
#14 329.3 [INFO] skip non existing resourceDirectory /bio-formats-build/bioformats/components/formats-gpl/lib
#14 329.3 [INFO] Copying 0 resource
#14 329.3 [INFO] Copying 0 resource
#14 329.3 [INFO] 
#14 329.3 [INFO] --- maven-compiler-plugin:3.14.0:compile (default-compile) @ formats-gpl ---
#14 329.3 [INFO] Recompiling the module because of changed dependency.
#14 329.3 [INFO] Compiling 178 source files with javac [debug release 8] to target/classes
#14 331.7 [WARNING] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:[1321,42] non-varargs call of varargs method with inexact argument type for last parameter;
#14 331.7   cast to java.lang.Object for a varargs call
#14 331.7   cast to java.lang.Object[] for a non-varargs call and to suppress this warning
#14 331.7 [INFO] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 331.7 [INFO] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 331.7 [INFO] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 331.7 [INFO] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
#14 331.7 [INFO] 
#14 331.7 [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ formats-gpl ---
#14 331.7 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 331.7 [INFO] Copying 24 resources
#14 331.8 [INFO] 
#14 331.8 [INFO] --- maven-compiler-plugin:3.14.0:testCompile (default-testCompile) @ formats-gpl ---
#14 331.8 [INFO] Recompiling the module because of changed dependency.
#14 331.8 [INFO] Compiling 23 source files with javac [debug release 8] to target/test-classes
#14 332.0 [INFO] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 332.0 [INFO] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 332.0 [INFO] 
#14 332.0 [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ formats-gpl ---
#14 332.0 [INFO] 
#14 332.0 [INFO] -------------------------------------------------------
#14 332.0 [INFO]  T E S T S
#14 332.0 [INFO] -------------------------------------------------------
#14 332.2 [INFO] Running TestSuite
#14 333.2 2025-08-31 00:14:22,356 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@78aea4b9 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 333.2 2025-08-31 00:14:22,359 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@69c79f09 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 333.3 2025-08-31 00:14:22,433 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@48e64352 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 333.3 2025-08-31 00:14:22,433 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@7249dadf reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 333.4 2025-08-31 00:14:22,482 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@7048f722 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 333.4 2025-08-31 00:14:22,482 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@c074c0c reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 333.4 2025-08-31 00:14:22,527 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3c1e3314 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 333.4 2025-08-31 00:14:22,527 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@26f143ed reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 333.5 2025-08-31 00:14:22,641 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@22d6cac2 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 333.5 2025-08-31 00:14:22,641 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@30cdae70 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 333.6 2025-08-31 00:14:22,682 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@28782602 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 333.6 2025-08-31 00:14:22,682 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@c96a4ea reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 333.6 2025-08-31 00:14:22,720 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@6622a690 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 333.6 2025-08-31 00:14:22,720 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@6b9c69a9 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 333.6 2025-08-31 00:14:22,756 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5d05ef57 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 333.6 2025-08-31 00:14:22,756 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@213deac2 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 333.9 [INFO] Tests run: 99, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.771 s - in TestSuite
#14 334.3 [INFO] 
#14 334.3 [INFO] Results:
#14 334.3 [INFO] 
#14 334.3 [INFO] Tests run: 99, Failures: 0, Errors: 0, Skipped: 0
#14 334.3 [INFO] 
#14 334.3 [INFO] 
#14 334.3 [INFO] --- maven-surefire-plugin:2.22.0:test (missing-mdb-test) @ formats-gpl ---
#14 334.3 [INFO] 
#14 334.3 [INFO] -------------------------------------------------------
#14 334.3 [INFO]  T E S T S
#14 334.3 [INFO] -------------------------------------------------------
#14 334.4 [INFO] Running TestSuite
#14 334.8 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.399 s - in TestSuite
#14 335.2 [INFO] 
#14 335.2 [INFO] Results:
#14 335.2 [INFO] 
#14 335.2 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
#14 335.2 [INFO] 
#14 335.2 [INFO] 
#14 335.2 [INFO] --- maven-surefire-plugin:2.22.0:test (missing-poi-test) @ formats-gpl ---
#14 335.2 [INFO] 
#14 335.2 [INFO] -------------------------------------------------------
#14 335.2 [INFO]  T E S T S
#14 335.2 [INFO] -------------------------------------------------------
#14 335.3 [INFO] Running TestSuite
#14 335.7 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.395 s - in TestSuite
#14 336.1 [INFO] 
#14 336.1 [INFO] Results:
#14 336.1 [INFO] 
#14 336.1 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
#14 336.1 [INFO] 
#14 336.1 [INFO] 
#14 336.1 [INFO] --- maven-surefire-plugin:2.22.0:test (missing-netcdf-test) @ formats-gpl ---
#14 336.1 [INFO] 
#14 336.1 [INFO] -------------------------------------------------------
#14 336.1 [INFO]  T E S T S
#14 336.1 [INFO] -------------------------------------------------------
#14 336.2 [INFO] Running TestSuite
#14 336.6 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.409 s - in TestSuite
#14 337.0 [INFO] 
#14 337.0 [INFO] Results:
#14 337.0 [INFO] 
#14 337.0 [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
#14 337.0 [INFO] 
#14 337.0 [INFO] 
#14 337.0 [INFO] --- maven-jar-plugin:3.1.0:jar (default-jar) @ formats-gpl ---
#14 337.0 [INFO] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT.jar
#14 337.0 [INFO] 
#14 337.0 [INFO] >>> maven-source-plugin:3.0.1:jar (default) > generate-sources @ formats-gpl >>>
#14 337.0 [INFO] 
#14 337.0 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ formats-gpl ---
#14 337.0 [INFO] 
#14 337.0 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ formats-gpl ---
#14 337.0 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 337.0 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 337.0 [INFO] Storing buildNumber: 0ca2998f3babc886ada1924b8bcbbeab291dcc25 at timestamp: 1756599266147
#14 337.0 [WARNING] Cannot get the branch information from the git repository: 
#14 337.0 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 337.0 
#14 337.0 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 337.0 [INFO] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 337.0 [INFO] Storing buildScmBranch: UNKNOWN
#14 337.0 [INFO] 
#14 337.0 [INFO] <<< maven-source-plugin:3.0.1:jar (default) < generate-sources @ formats-gpl <<<
#14 337.0 [INFO] 
#14 337.0 [INFO] 
#14 337.0 [INFO] --- maven-source-plugin:3.0.1:jar (default) @ formats-gpl ---
#14 337.1 [INFO] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT-sources.jar
#14 337.1 [INFO] 
#14 337.1 [INFO] --- maven-jar-plugin:3.1.0:test-jar (default) @ formats-gpl ---
#14 337.1 [INFO] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT-tests.jar
#14 337.1 [INFO] 
#14 337.1 [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ formats-gpl ---
#14 337.1 [INFO] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#14 337.1 [INFO] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#14 337.1 [INFO] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT-sources.jar
#14 337.1 [INFO] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT-tests.jar
#14 337.2 [INFO] 
#14 337.2 [INFO] ----------------------< ome:bio-formats_plugins >-----------------------
#14 337.2 [INFO] Building Bio-Formats Plugins for ImageJ 8.4.0-SNAPSHOT           [17/24]
#14 337.2 [INFO] --------------------------------[ jar ]---------------------------------
#14 337.2 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
#14 337.2 Progress (1): 4.1/7.9 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom (7.9 kB at 293 kB/s)
#14 337.2 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
#14 337.2 Progress (1): 0/2.5 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar (2.5 MB at 20 MB/s)
#14 337.3 [INFO] 
#14 337.3 [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ bio-formats_plugins ---
#14 337.3 [INFO] 
#14 337.3 [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-versions) @ bio-formats_plugins ---
#14 337.3 [INFO] 
#14 337.3 [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ bio-formats_plugins ---
#14 337.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 337.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 337.3 [INFO] Storing buildNumber: 0ca2998f3babc886ada1924b8bcbbeab291dcc25 at timestamp: 1756599266443
#14 337.3 [WARNING] Cannot get the branch information from the git repository: 
#14 337.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 337.3 
#14 337.3 [INFO] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 337.3 [INFO] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 337.3 [INFO] Storing buildScmBranch: UNKNOWN
#14 337.3 [INFO] 
#14 337.3 [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ bio-formats_plugins ---
#14 337.3 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 337.3 [INFO] Copying 3 resources
#14 337.3 [INFO] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
#14 337.3 [INFO] Copying 0 resource
#14 337.3 [INFO] Copying 0 resource
#14 337.3 [INFO] 
#14 337.3 [INFO] --- maven-compiler-plugin:3.14.0:compile (default-compile) @ bio-formats_plugins ---
#14 337.4 [INFO] Recompiling the module because of changed dependency.
#14 337.4 [INFO] Compiling 70 source files with javac [debug release 8] to target/classes
#14 337.8 [INFO] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 337.8 [INFO] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 337.8 [INFO] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 337.8 [INFO] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
#14 337.8 [INFO] 
#14 337.8 [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ bio-formats_plugins ---
#14 337.8 [INFO] Using 'UTF-8' encoding to copy filtered resources.
#14 337.8 [INFO] Copying 1 resource
#14 337.8 [INFO] 
#14 337.8 [INFO] --- maven-compiler-plugin:3.14.0:testCompile (default-testCompile) @ bio-formats_plugins ---
#14 337.8 [INFO] Recompiling the module because of changed dependency.
#14 337.8 [INFO] Compiling 3 source files with javac [debug release 8] to target/test-classes
#14 338.0 [INFO] 
#14 338.0 [INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ bio-formats_plugins ---
#14 338.0 [INFO] 
#14 338.0 [INFO] -------------------------------------------------------
#14 338.0 [INFO]  T E S T S
#14 338.0 [INFO] -------------------------------------------------------
#14 338.2 [INFO] Running TestSuite
#14 339.4 Warning: Data has too many channels for Colorized color mode
#14 339.4 Warning: Data has too many channels for Colorized color mode
#14 339.5 Warning: Data has too many channels for Colorized color mode
#14 339.5 Warning: Data has too many channels for Colorized color mode
#14 339.6 Warning: Data has too many channels for Colorized color mode
#14 339.6 Warning: Data has too many channels for Colorized color mode
#14 339.7 Warning: Data has too many channels for Colorized color mode
#14 339.7 Warning: Data has too many channels for Colorized color mode
#14 339.7 Warning: Data has too many channels for Composite color mode
#14 339.8 Warning: Data has too many channels for Composite color mode
#14 340.0 Warning: Data has too many channels for Composite color mode
#14 340.0 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.1 Warning: Data has too many channels for Composite color mode
#14 340.4 Warning: Data has too many channels for Composite color 
#14 340.4 [output clipped, log limit 2MiB reached]
#14 720.4 SLF4J: No SLF4J providers were found.
#14 720.4 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 720.4 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 727.0s

#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s

#16 [12/13] RUN ant jars tools
#16 0.275 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.624      [echo] isSnapshot = true
#16 0.736 
#16 0.736 copy-jars:
#16 0.736 
#16 0.736 deps-formats-api:
#16 0.818      [echo] isSnapshot = true
#16 0.878 
#16 0.878 install-pom:
#16 1.052 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 1.078 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 1.082 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.084 
#16 1.084 jar-formats-api:
#16 1.208      [echo] isSnapshot = true
#16 1.362 
#16 1.362 init-title:
#16 1.362      [echo] ----------=========== formats-api ===========----------
#16 1.362 
#16 1.362 init-timestamp:
#16 1.369 
#16 1.369 init:
#16 1.369 
#16 1.369 copy-resources:
#16 1.370     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.383      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.386 
#16 1.386 compile:
#16 1.602 [resolver:resolve] Resolving artifacts
#16 1.636     [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.851     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 2.452     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.452     [javac] import loci.common.ReflectedUniverse;
#16 2.452     [javac]                   ^
#16 2.752     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.752     [javac]     int currentIndex = r.getCoreIndex();
#16 2.752     [javac]                         ^
#16 2.752     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.752     [javac]     r.setCoreIndex(coreIndex);
#16 2.752     [javac]      ^
#16 2.753     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.753     [javac]     r.setCoreIndex(currentIndex);
#16 2.753     [javac]      ^
#16 2.853     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.853     [javac]   public void setCoreIndex(int no) {
#16 2.853     [javac]               ^
#16 2.853     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.853     [javac]   public int getCoreIndex() {
#16 2.853     [javac]              ^
#16 2.854     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 2.854     [javac]   public int coreIndexToSeries(int index)
#16 2.854     [javac]              ^
#16 2.854     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 2.854     [javac]   public int seriesToCoreIndex(int series)
#16 2.854     [javac]              ^
#16 2.854     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.854     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 2.854     [javac]                             ^
#16 2.955     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.955     [javac]     if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 2.955     [javac]                                              ^
#16 2.955     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.955     [javac]     if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 2.955     [javac]                                              ^
#16 2.955     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.955     [javac]       core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 2.955     [javac]                                                      ^
#16 2.955     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.955     [javac]       core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 2.956     [javac]                                                      ^
#16 3.056     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.056     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 3.056     [javac]     ^
#16 3.056     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.056     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 3.056     [javac]                               ^
#16 3.157     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.157     [javac]   public void setCoreIndex(int no) {
#16 3.157     [javac]               ^
#16 3.157     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.157     [javac]   public int getCoreIndex() {
#16 3.157     [javac]              ^
#16 3.157     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.157     [javac]   public int coreIndexToSeries(int index) {
#16 3.157     [javac]              ^
#16 3.157     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.158     [javac]   public int seriesToCoreIndex(int series) {
#16 3.158     [javac]              ^
#16 3.158     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.158     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 3.158     [javac]                             ^
#16 3.158     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.158     [javac]     return getReader().getCoreMetadataList();
#16 3.158     [javac]                       ^
#16 3.158     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.158     [javac]     return getReader().getCoreIndex();
#16 3.158     [javac]                       ^
#16 3.158     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.159     [javac]     getReader().setCoreIndex(no);
#16 3.159     [javac]                ^
#16 3.159     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.159     [javac]     return getReader().seriesToCoreIndex(series);
#16 3.159     [javac]                       ^
#16 3.159     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.159     [javac]     return getReader().coreIndexToSeries(index);
#16 3.160     [javac]                       ^
#16 3.260     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.260     [javac]   public void setCoreIndex(int no) {
#16 3.260     [javac]               ^
#16 3.260     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.260     [javac]   public int getCoreIndex() {
#16 3.260     [javac]              ^
#16 3.260     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.260     [javac]   public int coreIndexToSeries(int index) {
#16 3.261     [javac]              ^
#16 3.261     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.261     [javac]   public int seriesToCoreIndex(int series) {
#16 3.261     [javac]              ^
#16 3.261     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.261     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 3.261     [javac]                             ^
#16 3.261     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.261     [javac]     List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.261     [javac]                                        ^
#16 3.261     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.261     [javac]     return reader.getCoreIndex();
#16 3.261     [javac]                  ^
#16 3.261     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.261     [javac]     reader.setCoreIndex(no);
#16 3.261     [javac]           ^
#16 3.262     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.262     [javac]     return reader.seriesToCoreIndex(series);
#16 3.262     [javac]                  ^
#16 3.262     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.262     [javac]     return reader.coreIndexToSeries(index);
#16 3.262     [javac]                  ^
#16 3.419     [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.419     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.419     [javac] 36 warnings
#16 3.420 
#16 3.420 formats-api.jar:
#16 3.420     [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.444       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.480 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 3.484 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 3.544 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 3.545 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 3.548 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.548 
#16 3.548 deps-turbojpeg:
#16 3.548 
#16 3.548 jar-turbojpeg:
#16 3.653      [echo] isSnapshot = true
#16 3.807 
#16 3.807 init-title:
#16 3.808      [echo] ----------=========== turbojpeg ===========----------
#16 3.808 
#16 3.808 init-timestamp:
#16 3.808 
#16 3.808 init:
#16 3.808 
#16 3.808 copy-resources:
#16 3.809     [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 3.810 
#16 3.810 compile:
#16 3.823 [resolver:resolve] Resolving artifacts
#16 3.827     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.030     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 4.702     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 4.702     [javac]   protected void finalize() throws Throwable {
#16 4.702     [javac]                  ^
#16 4.702     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 4.702     [javac]       super.finalize();
#16 4.702     [javac]            ^
#16 4.702     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 4.702     [javac]   protected void finalize() throws Throwable {
#16 4.702     [javac]                  ^
#16 4.702     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 4.702     [javac]       super.finalize();
#16 4.702     [javac]            ^
#16 4.702     [javac] 5 warnings
#16 4.703 
#16 4.703 jar:
#16 4.708       [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 4.903 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 4.911 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 4.914 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 4.917 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 4.921 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 4.922 
#16 4.922 deps-formats-bsd:
#16 4.922 
#16 4.922 jar-formats-bsd:
#16 5.038      [echo] isSnapshot = true
#16 5.175 
#16 5.175 init-title:
#16 5.175      [echo] ----------=========== formats-bsd ===========----------
#16 5.175 
#16 5.175 init-timestamp:
#16 5.176 
#16 5.176 init:
#16 5.176 
#16 5.176 copy-resources:
#16 5.176     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.179      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.179 
#16 5.179 compile:
#16 5.389 [resolver:resolve] Resolving artifacts
#16 5.415     [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.624     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 6.725     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.725     [javac] import loci.common.ReflectedUniverse;
#16 6.725     [javac]                   ^
#16 7.126     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.126     [javac]       core.size() != reader.getCoreMetadataList().size())
#16 7.126     [javac]                            ^
#16 7.126     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.126     [javac]       List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 7.126     [javac]                                          ^
#16 7.126     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.126     [javac]     int n = reader.getCoreMetadataList().size();
#16 7.126     [javac]                   ^
#16 7.126     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.126     [javac]     reader.setCoreIndex(coreIndex);
#16 7.126     [javac]           ^
#16 7.126     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.126     [javac]     int n = reader.getCoreMetadataList().size();
#16 7.126     [javac]                   ^
#16 7.126     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.126     [javac]     int n = reader.getCoreMetadataList().size();
#16 7.126     [javac]                   ^
#16 7.126     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 7.126     [javac]     if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 7.126     [javac]                                         ^
#16 7.126     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.126     [javac]     int n = reader.getCoreMetadataList().size();
#16 7.126     [javac]                   ^
#16 7.126     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 7.126     [javac]     if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 7.126     [javac]                                         ^
#16 7.126     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.126     [javac]     int n = reader.getCoreMetadataList().size();
#16 7.127     [javac]                   ^
#16 7.227     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.227     [javac]     if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 7.227     [javac]                                  ^
#16 7.227     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.227     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.227     [javac]                  ^
#16 7.227     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.227     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.227     [javac]                                              ^
#16 7.227     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.227     [javac]     return noStitch ? reader.getCoreMetadataList() : core;
#16 7.227     [javac]                             ^
#16 7.227     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.227     [javac]     if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 7.227     [javac]               ^
#16 7.227     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.227     [javac]       seriesCount = reader.getCoreMetadataList().size();
#16 7.227     [javac]                           ^
#16 7.227     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.227     [javac]       if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 7.228     [javac]                 ^
#16 7.228     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.228     [javac]     if (reader.getCoreMetadataList().size() > 1) return 0;
#16 7.228     [javac]               ^
#16 7.228     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.228     [javac]       r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 7.228     [javac]                            ^
#16 7.328     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.328     [javac]     int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.328     [javac]                               ^
#16 7.528     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.529     [javac]     BitWriter out = new BitWriter();
#16 7.529     [javac]     ^
#16 7.529     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.529     [javac]     BitWriter out = new BitWriter();
#16 7.529     [javac]                         ^
#16 7.629     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 7.629     [javac]       return new Double(v);
#16 7.629     [javac]              ^
#16 8.330     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.330     [javac]     return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 8.330     [javac]                                         ^
#16 8.330     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.330     [javac]     return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 8.330     [javac]                                         ^
#16 8.330     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.330     [javac]     return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 8.330     [javac]                                         ^
#16 8.430     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 8.430     [javac]                channelNames.put(new Integer(channelNames.size()), value);
#16 8.430     [javac]                                 ^
#16 8.630     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.630     [javac]       OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 8.630     [javac]                                                                    ^
#16 8.731     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 8.731     [javac]     StreamTokenizer st = new StreamTokenizer(in);
#16 8.731     [javac]                          ^
#16 8.831     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.831     [javac] 									store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#16 8.831     [javac] 									                                    ^
#16 8.831     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.831     [javac]     core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 8.831     [javac]                                                    ^
#16 8.831     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.831     [javac]   protected ReflectedUniverse r;
#16 8.831     [javac]             ^
#16 8.831     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.831     [javac]       r = new ReflectedUniverse();
#16 8.831     [javac]               ^
#16 8.931     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 8.931     [javac]           wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 8.931     [javac]                                                                               ^
#16 8.931     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 8.932     [javac]           sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 8.932     [javac]                                                                                ^
#16 8.932     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 8.932     [javac]         String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 8.932     [javac]                                                                                   ^
#16 8.932     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 8.932     [javac]         String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 8.932     [javac]                                                                                   ^
#16 8.932     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 8.932     [javac]         volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 8.932     [javac]                                                                                        ^
#16 8.932     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 8.932     [javac]         volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 8.932     [javac]                                                                                         ^
#16 8.932     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 8.932     [javac]         volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 8.932     [javac]                                                                                        ^
#16 8.932     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 8.932     [javac]             offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 8.932     [javac]                                                                                                               ^
#16 8.932     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 8.932     [javac]             offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 8.932     [javac]                                                                                                               ^
#16 9.032     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.032     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.032     [javac]               ^
#16 9.032     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 9.032     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.032     [javac]                                            ^
#16 9.032     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.032     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.032     [javac]               ^
#16 9.032     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 9.032     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.032     [javac]                                             ^
#16 9.133     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 9.133     [javac]       libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 9.133     [javac]                                        ^
#16 9.133     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.133     [javac]         doubleResult[i] = new Double(result.get(i).doubleValue());
#16 9.133     [javac]                           ^
#16 9.133     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.133     [javac]       result[i] = new Double(readNumber().doubleValue());
#16 9.133     [javac]                   ^
#16 9.133     [javac] Note: Some input files use unchecked or unsafe operations.
#16 9.133     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 9.133     [javac] 51 warnings
#16 9.174 
#16 9.174 formats-bsd.jar:
#16 9.183       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 9.307 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 9.311 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 9.354 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 9.356 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 9.358 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 9.358 
#16 9.358 deps-formats-gpl:
#16 9.358 
#16 9.358 jar-formats-gpl:
#16 9.454      [echo] isSnapshot = true
#16 9.610 
#16 9.610 init-title:
#16 9.610      [echo] ----------=========== formats-gpl ===========----------
#16 9.610 
#16 9.610 init-timestamp:
#16 9.611 
#16 9.611 init:
#16 9.611 
#16 9.611 copy-resources:
#16 9.611     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.613      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.614 
#16 9.614 compile:
#16 10.01 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.36 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.76 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.76 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.88 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.00 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.04 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.16 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.28 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.32 [resolver:resolve] Resolving artifacts
#16 11.33 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.33 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.47 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.47 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.83 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.84 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.85     [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.06     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 13.36     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.36     [javac] import loci.formats.codec.BitWriter;
#16 13.36     [javac]                          ^
#16 13.46     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.46     [javac] import loci.formats.codec.BitWriter;
#16 13.46     [javac]                          ^
#16 15.47     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 15.47     [javac]       LOGGER.trace("Parsing tokens: {}", tokens);
#16 15.47     [javac]                                          ^
#16 15.47     [javac]   cast to Object for a varargs call
#16 15.47     [javac]   cast to Object[] for a non-varargs call and to suppress this warning
#16 15.57     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.57     [javac]     BitWriter bits = null;
#16 15.57     [javac]     ^
#16 15.57     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.57     [javac]       bits = new BitWriter(planes[index].length / 8);
#16 15.57     [javac]                  ^
#16 15.87     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 15.87     [javac]     CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 15.87     [javac]                                                    ^
#16 16.27     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#16 16.27     [javac]       store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#16 16.27     [javac]                                   ^
#16 16.27     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#16 16.27     [javac]       AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#16 16.27     [javac]                              ^
#16 16.37     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.37     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.37     [javac]     ^
#16 16.37     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.37     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.37     [javac]                          ^
#16 16.63     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.63     [javac]     Variable variable = group.findVariable(variableName);
#16 16.63     [javac]                              ^
#16 16.63     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.63     [javac]     Variable variable = group.findVariable(variableName);
#16 16.63     [javac]                              ^
#16 16.63     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 16.63     [javac]       List<Attribute> attributes = variable.getAttributes();
#16 16.63     [javac]                                            ^
#16 16.63     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.63     [javac]       String groupName = group.getName();
#16 16.63     [javac]                               ^
#16 16.63     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 16.63     [javac]       List<Attribute> attributes = group.getAttributes();
#16 16.63     [javac]                                         ^
#16 16.63     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.63     [javac]         String variableName = variable.getName();
#16 16.63     [javac]                                       ^
#16 16.63     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 16.63     [javac]       Group nextParent = parent.findGroup(token);
#16 16.63     [javac]                                ^
#16 16.63     [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.63     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.63     [javac] 18 warnings
#16 16.63 
#16 16.63 formats-gpl.jar:
#16 16.64       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.79 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 16.80 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 16.80 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 16.80 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 16.81 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.81 
#16 16.81 deps-bio-formats-plugins:
#16 16.81 
#16 16.81 jar-bio-formats-plugins:
#16 16.91      [echo] isSnapshot = true
#16 17.06 
#16 17.06 init-title:
#16 17.06      [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.06 
#16 17.06 init-timestamp:
#16 17.06 
#16 17.06 init:
#16 17.06 
#16 17.06 copy-resources:
#16 17.06     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.07      [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.07 
#16 17.07 compile:
#16 17.34 [resolver:resolve] Resolving artifacts
#16 17.36     [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.56     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 18.37     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.37     [javac] import loci.common.ReflectedUniverse;
#16 18.37     [javac]                   ^
#16 18.37     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.37     [javac] import loci.common.ReflectedUniverse;
#16 18.37     [javac]                   ^
#16 18.87     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.87     [javac]     "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.87     [javac]                                      ^
#16 18.97     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.97     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 18.97     [javac]         ^
#16 18.97     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.97     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 18.97     [javac]                                   ^
#16 19.17     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.17     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 19.17     [javac]     ^
#16 19.17     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.17     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 19.17     [javac]                                ^
#16 19.47     [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 19.47     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 19.47     [javac] 8 warnings
#16 19.48 
#16 19.48 bio-formats-plugins.jar:
#16 19.49       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 19.52 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 19.52 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 19.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 19.58 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 19.59 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 19.59 
#16 19.59 deps-bio-formats-tools:
#16 19.59 
#16 19.59 jar-bio-formats-tools:
#16 19.69      [echo] isSnapshot = true
#16 19.83 
#16 19.83 init-title:
#16 19.83      [echo] ----------=========== bio-formats-tools ===========----------
#16 19.83 
#16 19.83 init-timestamp:
#16 19.83 
#16 19.83 init:
#16 19.83 
#16 19.83 copy-resources:
#16 19.83     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.83 
#16 19.83 compile:
#16 20.07 [resolver:resolve] Resolving artifacts
#16 20.08     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.29     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 21.33     [javac] 1 warning
#16 21.33 
#16 21.33 bio-formats-tools.jar:
#16 21.34       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 21.34 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 21.35 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 21.41 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 21.41 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 21.41 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 21.41 
#16 21.41 deps-tests:
#16 21.41 
#16 21.41 jar-tests:
#16 21.50      [echo] isSnapshot = true
#16 21.63 
#16 21.63 init-title:
#16 21.64      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 21.64 
#16 21.64 init-timestamp:
#16 21.64 
#16 21.64 init:
#16 21.64 
#16 21.64 copy-resources:
#16 21.64     [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.64 
#16 21.64 compile:
#16 21.93 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.00 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.36 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.38 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.34 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.09 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 24.10 [resolver:resolve] Resolving artifacts
#16 24.11 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.15 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.51 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.53 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.94 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.21 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 25.21     [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 25.52     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 26.52     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.52     [javac]         int index = unflattenedReader.getCoreIndex();
#16 26.52     [javac]                                      ^
#16 26.52     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 26.52     [javac]         reader.setCoreIndex(index);
#16 26.52     [javac]               ^
#16 26.72     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.72     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 26.72     [javac]                                              ^
#16 26.72     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.72     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 26.72     [javac]                                              ^
#16 27.02     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 27.02     [javac]         FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 27.02     [javac]                                                    ^
#16 27.02     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 27.02     [javac]         FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 27.02     [javac]                                                    ^
#16 27.02     [javac] Note: Some input files use unchecked or unsafe operations.
#16 27.02     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 27.02     [javac] 7 warnings
#16 27.06 
#16 27.06 tests.jar:
#16 27.07       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 27.08 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 27.08 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 27.09 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 27.09 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.09 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 27.09 
#16 27.09 jars:
#16 27.09 
#16 27.09 copy-jars:
#16 27.09 
#16 27.09 deps-formats-api:
#16 27.14      [echo] isSnapshot = true
#16 27.18 
#16 27.18 install-pom:
#16 27.32 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 27.35 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.35 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 27.36 
#16 27.36 jar-formats-api:
#16 27.44      [echo] isSnapshot = true
#16 27.57 
#16 27.57 init-title:
#16 27.57      [echo] ----------=========== formats-api ===========----------
#16 27.57 
#16 27.57 init-timestamp:
#16 27.57 
#16 27.57 init:
#16 27.57 
#16 27.57 copy-resources:
#16 27.57 
#16 27.57 compile:
#16 27.70 [resolver:resolve] Resolving artifacts
#16 27.71 
#16 27.71 formats-api.jar:
#16 27.73 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 27.73 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 27.73 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 27.74 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.74 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 27.74 
#16 27.74 deps-turbojpeg:
#16 27.74 
#16 27.74 jar-turbojpeg:
#16 27.82      [echo] isSnapshot = true
#16 27.95 
#16 27.95 init-title:
#16 27.95      [echo] ----------=========== turbojpeg ===========----------
#16 27.95 
#16 27.95 init-timestamp:
#16 27.95 
#16 27.95 init:
#16 27.95 
#16 27.95 copy-resources:
#16 27.95 
#16 27.95 compile:
#16 27.96 [resolver:resolve] Resolving artifacts
#16 27.96 
#16 27.96 jar:
#16 27.97 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 27.97 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 27.98 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 27.98 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.98 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 27.98 
#16 27.98 deps-formats-bsd:
#16 27.98 
#16 27.98 jar-formats-bsd:
#16 28.07      [echo] isSnapshot = true
#16 28.20 
#16 28.20 init-title:
#16 28.20      [echo] ----------=========== formats-bsd ===========----------
#16 28.20 
#16 28.20 init-timestamp:
#16 28.20 
#16 28.20 init:
#16 28.20 
#16 28.20 copy-resources:
#16 28.20 
#16 28.20 compile:
#16 28.40 [resolver:resolve] Resolving artifacts
#16 28.42 
#16 28.42 formats-bsd.jar:
#16 28.45 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 28.45 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 28.45 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 28.45 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.46 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 28.46 
#16 28.46 deps-formats-gpl:
#16 28.46 
#16 28.46 jar-formats-gpl:
#16 28.54      [echo] isSnapshot = true
#16 28.68 
#16 28.68 init-title:
#16 28.68      [echo] ----------=========== formats-gpl ===========----------
#16 28.68 
#16 28.68 init-timestamp:
#16 28.68 
#16 28.68 init:
#16 28.68 
#16 28.68 copy-resources:
#16 28.68 
#16 28.68 compile:
#16 28.91 [resolver:resolve] Resolving artifacts
#16 28.93 
#16 28.93 formats-gpl.jar:
#16 28.97 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 28.97 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 29.00 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 29.01 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.01 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 29.01 
#16 29.01 deps-bio-formats-plugins:
#16 29.01 
#16 29.01 jar-bio-formats-plugins:
#16 29.10      [echo] isSnapshot = true
#16 29.23 
#16 29.23 init-title:
#16 29.23      [echo] ----------=========== bio-formats_plugins ===========----------
#16 29.23 
#16 29.23 init-timestamp:
#16 29.23 
#16 29.23 init:
#16 29.23 
#16 29.23 copy-resources:
#16 29.23 
#16 29.23 compile:
#16 29.48 [resolver:resolve] Resolving artifacts
#16 29.49 
#16 29.49 bio-formats-plugins.jar:
#16 29.51 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 29.51 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 29.51 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 29.52 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.52 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 29.52 
#16 29.52 deps-bio-formats-tools:
#16 29.52 
#16 29.52 jar-bio-formats-tools:
#16 29.61      [echo] isSnapshot = true
#16 29.74 
#16 29.74 init-title:
#16 29.74      [echo] ----------=========== bio-formats-tools ===========----------
#16 29.74 
#16 29.74 init-timestamp:
#16 29.74 
#16 29.74 init:
#16 29.74 
#16 29.74 copy-resources:
#16 29.74 
#16 29.74 compile:
#16 29.97 [resolver:resolve] Resolving artifacts
#16 29.98 
#16 29.98 bio-formats-tools.jar:
#16 29.98 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 29.99 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 29.99 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 29.99 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.99 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 29.99 
#16 29.99 deps-tests:
#16 29.99 
#16 29.99 jar-tests:
#16 30.08      [echo] isSnapshot = true
#16 30.21 
#16 30.21 init-title:
#16 30.21      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 30.21 
#16 30.21 init-timestamp:
#16 30.21 
#16 30.21 init:
#16 30.21 
#16 30.21 copy-resources:
#16 30.21 
#16 30.21 compile:
#16 30.45 [resolver:resolve] Resolving artifacts
#16 30.46 
#16 30.46 tests.jar:
#16 30.47 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 30.47 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 30.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 30.48 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 30.48 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 30.48 
#16 30.48 jars:
#16 30.48 
#16 30.48 tools:
#16 30.48      [echo] ----------=========== bioformats_package ===========----------
#16 30.57      [echo] isSnapshot = true
#16 30.76 
#16 30.76 init-timestamp:
#16 30.76 
#16 30.76 bundle:
#16 30.99 [resolver:resolve] Resolving artifacts
#16 31.00     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.04     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.1-SNAPSHOT/ome-common-6.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.06     [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.09     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.10     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.17     [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.19     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.25     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.26     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.52     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.58     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.60     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.67     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.68     [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.70     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.70     [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.91     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.48     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.49     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.49     [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.50     [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.59     [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.60     [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.60     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.1-SNAPSHOT/ome-xml-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.68     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.1-SNAPSHOT/specification-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.75     [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.77     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.2-SNAPSHOT/ome-codecs-1.1.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.78     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.94     [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.03     [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.08     [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.09     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.20     [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.23     [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.78     [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.80     [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.84     [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.97     [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.99     [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.01     [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.02     [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.30     [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.38     [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.46     [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.58     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.60     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.60     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.75     [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.76     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.31     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.32     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.45     [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.51     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.52     [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.53     [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.60     [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.63     [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.07     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.09     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.10     [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.12     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.12     [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.15     [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.60     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.73     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 37.16       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 44.49    [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.31 [resolver:install] Using default POM (ome:bioformats_package:8.4.0-SNAPSHOT)
#16 45.31 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#16 45.32 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#16 45.36 [resolver:install] Installing ome:bioformats_package:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 45.37 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 45.37 
#16 45.37 BUILD SUCCESSFUL
#16 45.37 Total time: 45 seconds
#16 DONE 46.3s

#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s

#18 exporting to image
#18 exporting layers
#18 exporting layers 4.2s done
#18 writing image sha256:5bae461cf698306a4366839804a946ee633ec874bf7e4b105f34f4d47823dd2d done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.3s

 1 warning found (use docker --debug to expand):
 - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS