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#15 459.0 Progress (4): 1.8/3.0 MB | 0.7/1.6 MB | 413/578 kB | 180/862 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/core5/httpcore5/5.2.4/httpcore5-5.2.4.jar
#15 459.0 Progress (4): 1.8/3.0 MB | 0.7/1.6 MB | 417/578 kB | 180/862 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-core/2.16.1/jackson-core-2.16.1.jar (578 kB at 3.3 MB/s)
#15 459.1 Progress (4): 2.6/3.0 MB | 1.5/1.6 MB | 862 kB | 286/855 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/core5/httpcore5-h2/5.2.4/httpcore5-h2-5.2.4.jar
#15 459.1 Progress (4): 2.6/3.0 MB | 1.5/1.6 MB | 862 kB | 311/855 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/client5/httpclient5/5.3.1/httpclient5-5.3.1.jar (862 kB at 4.3 MB/s)
#15 459.1 Progress (3): 3.0 MB | 1.6 MB | 741/855 kB
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Progress (3): 3.0 MB | 1.6 MB | 855 kB
Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.16.1/jackson-databind-2.16.1.jar (1.6 MB at 8.0 MB/s)
#15 459.1 Progress (3): 3.0 MB | 855 kB | 4.1/237 kB
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#15 471.0 [[1;34mINFO[m] T E S T S
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#15 472.1 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats-examples[0;1m ---[m
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#15 472.1 [[1;34mINFO[m]
#15 472.1 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-examples[0;1m ---[m
#15 472.1 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#15 472.1 [[1;34mINFO[m] Copying 1 resource
#15 472.1 [[1;34mINFO[m] Copying 5 resources
#15 472.1 [[1;34mINFO[m]
#15 472.1 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.14.0:compile[m [1m(default-compile)[m @ [36mbio-formats-examples[0;1m ---[m
#15 472.1 [[1;34mINFO[m] Recompiling the module because of [1mchanged dependency[m.
#15 472.1 [[1;34mINFO[m] Compiling 13 source files with javac [debug release 8] to target/classes
#15 472.2 [[1;33mWARNING[m] source value 8 is obsolete and will be removed in a future release
#15 472.2 [[1;33mWARNING[m] target value 8 is obsolete and will be removed in a future release
#15 472.2 [[1;33mWARNING[m] To suppress warnings about obsolete options, use -Xlint:-options.
#15 472.2 [[1;34mINFO[m]
#15 472.2 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats-examples[0;1m ---[m
#15 472.2 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#15 472.2 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bio-formats-examples/src/test/resources
#15 472.2 [[1;34mINFO[m]
#15 472.2 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.14.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats-examples[0;1m ---[m
#15 472.2 [[1;34mINFO[m] No sources to compile
#15 472.2 [[1;34mINFO[m]
#15 472.2 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats-examples[0;1m ---[m
#15 472.2 [[1;34mINFO[m] No tests to run.
#15 472.2 [[1;34mINFO[m]
#15 472.2 [[1;34mINFO[m] [1m>>> [0;32mexec-maven-plugin:1.2.1:java[m [1m(default)[0;1m > [0;1mvalidate[m @ [36mbio-formats-examples[0;1m >>>[m
#15 472.2 [[1;34mINFO[m]
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#15 472.2 [[1;34mINFO[m] [1m<<< [0;32mexec-maven-plugin:1.2.1:java[m [1m(default)[0;1m < [0;1mvalidate[m @ [36mbio-formats-examples[0;1m <<<[m
#15 472.2 [[1;34mINFO[m]
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#15 472.2 [output clipped, log limit 2MiB reached]
#15 505.0 WARNING: A restricted method in java.lang.System has been called
#15 505.0 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 505.0 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 505.0 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 505.0
#15 553.3 SLF4J: No SLF4J providers were found.
#15 553.3 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 553.3 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 553.8 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 553.8 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 553.8 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 553.8 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 561.3s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.0s
#17 [13/14] RUN ant jars tools
#17 0.585 Buildfile: /bio-formats-build/bioformats/build.xml
#17 1.196 [echo] isSnapshot = true
#17 1.406
#17 1.406 copy-jars:
#17 1.406
#17 1.406 deps-formats-api:
#17 1.492 [echo] isSnapshot = true
#17 1.548
#17 1.548 install-pom:
#17 1.738 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/pom-bio-formats-8.5.0-SNAPSHOT.pom
#17 1.750 [resolver:install] Installing ome:pom-bio-formats:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 1.754 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 1.756
#17 1.756 jar-formats-api:
#17 1.865 [echo] isSnapshot = true
#17 2.031
#17 2.031 init-title:
#17 2.031 [echo] ----------=========== formats-api ===========----------
#17 2.031
#17 2.031 init-timestamp:
#17 2.040
#17 2.040 init:
#17 2.040
#17 2.040 copy-resources:
#17 2.041 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 2.056 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 2.058
#17 2.058 compile:
#17 2.245 [resolver:resolve] Resolving artifacts
#17 2.273 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 2.538 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 2.538 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 2.539 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 2.539 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 2.539 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 2.539 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 3.240 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.240 [javac] import loci.common.ReflectedUniverse;
#17 3.240 [javac] ^
#17 3.543 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.543 [javac] int currentIndex = r.getCoreIndex();
#17 3.543 [javac] ^
#17 3.543 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.543 [javac] r.setCoreIndex(coreIndex);
#17 3.543 [javac] ^
#17 3.543 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.543 [javac] r.setCoreIndex(currentIndex);
#17 3.543 [javac] ^
#17 3.643 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.643 [javac] public void setCoreIndex(int no) {
#17 3.643 [javac] ^
#17 3.643 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.643 [javac] public int getCoreIndex() {
#17 3.644 [javac] ^
#17 3.644 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.644 [javac] public int coreIndexToSeries(int index)
#17 3.644 [javac] ^
#17 3.644 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.644 [javac] public int seriesToCoreIndex(int series)
#17 3.644 [javac] ^
#17 3.644 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.644 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.644 [javac] ^
#17 3.744 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.744 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 3.744 [javac] ^
#17 3.744 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.744 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 3.744 [javac] ^
#17 3.744 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.745 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 3.745 [javac] ^
#17 3.745 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.745 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 3.745 [javac] ^
#17 3.845 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 3.845 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 3.845 [javac] ^
#17 3.845 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.845 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.845 [javac] ^
#17 3.845 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.845 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.845 [javac] ^
#17 3.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.946 [javac] public void setCoreIndex(int no) {
#17 3.946 [javac] ^
#17 3.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.946 [javac] public int getCoreIndex() {
#17 3.946 [javac] ^
#17 3.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.946 [javac] public int coreIndexToSeries(int index) {
#17 3.946 [javac] ^
#17 3.946 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.946 [javac] public int seriesToCoreIndex(int series) {
#17 3.947 [javac] ^
#17 3.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.947 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.947 [javac] ^
#17 3.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.947 [javac] return getReader().getCoreMetadataList();
#17 3.947 [javac] ^
#17 3.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.947 [javac] return getReader().getCoreIndex();
#17 3.947 [javac] ^
#17 3.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.947 [javac] getReader().setCoreIndex(no);
#17 3.947 [javac] ^
#17 3.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.947 [javac] return getReader().seriesToCoreIndex(series);
#17 3.947 [javac] ^
#17 3.947 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.947 [javac] return getReader().coreIndexToSeries(index);
#17 3.947 [javac] ^
#17 4.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.048 [javac] public void setCoreIndex(int no) {
#17 4.048 [javac] ^
#17 4.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 4.048 [javac] public int getCoreIndex() {
#17 4.048 [javac] ^
#17 4.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 4.048 [javac] public int coreIndexToSeries(int index) {
#17 4.048 [javac] ^
#17 4.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 4.048 [javac] public int seriesToCoreIndex(int series) {
#17 4.048 [javac] ^
#17 4.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 4.048 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 4.048 [javac] ^
#17 4.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 4.048 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 4.048 [javac] ^
#17 4.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 4.048 [javac] return reader.getCoreIndex();
#17 4.048 [javac] ^
#17 4.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.048 [javac] reader.setCoreIndex(no);
#17 4.048 [javac] ^
#17 4.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 4.048 [javac] return reader.seriesToCoreIndex(series);
#17 4.048 [javac] ^
#17 4.048 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 4.049 [javac] return reader.coreIndexToSeries(index);
#17 4.049 [javac] ^
#17 4.236 [javac] Note: Some input files use unchecked or unsafe operations.
#17 4.236 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 4.236 [javac] 40 warnings
#17 4.236
#17 4.236 formats-api.jar:
#17 4.237 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 4.264 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 4.300 [resolver:install] Using default POM (ome:formats-api:8.5.0-SNAPSHOT)
#17 4.303 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.pom
#17 4.349 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.jar
#17 4.350 [resolver:install] Installing ome:formats-api:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 4.352 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 4.353
#17 4.353 deps-turbojpeg:
#17 4.353
#17 4.353 jar-turbojpeg:
#17 4.452 [echo] isSnapshot = true
#17 4.604
#17 4.604 init-title:
#17 4.604 [echo] ----------=========== turbojpeg ===========----------
#17 4.604
#17 4.604 init-timestamp:
#17 4.605
#17 4.605 init:
#17 4.605
#17 4.605 copy-resources:
#17 4.605 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.606
#17 4.606 compile:
#17 4.617 [resolver:resolve] Resolving artifacts
#17 4.620 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.823 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 4.823 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 4.823 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 4.823 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 4.823 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 4.823 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 5.707 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.707 [javac] protected void finalize() throws Throwable {
#17 5.707 [javac] ^
#17 5.707 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.707 [javac] super.finalize();
#17 5.707 [javac] ^
#17 5.707 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.707 [javac] protected void finalize() throws Throwable {
#17 5.707 [javac] ^
#17 5.707 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.707 [javac] super.finalize();
#17 5.707 [javac] ^
#17 5.707 [javac] 8 warnings
#17 5.708
#17 5.708 jar:
#17 5.712 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 5.899 [resolver:install] Using default POM (ome:turbojpeg:8.5.0-SNAPSHOT)
#17 5.907 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.pom
#17 5.910 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.jar
#17 5.912 [resolver:install] Installing ome:turbojpeg:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 5.915 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 5.916
#17 5.916 deps-formats-bsd:
#17 5.916
#17 5.916 jar-formats-bsd:
#17 6.045 [echo] isSnapshot = true
#17 6.189
#17 6.189 init-title:
#17 6.189 [echo] ----------=========== formats-bsd ===========----------
#17 6.189
#17 6.189 init-timestamp:
#17 6.189
#17 6.189 init:
#17 6.189
#17 6.189 copy-resources:
#17 6.190 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 6.193 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 6.193
#17 6.193 compile:
#17 6.421 [resolver:resolve] Resolving artifacts
#17 6.446 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 6.665 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 6.665 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 6.665 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 6.665 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 6.665 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 6.665 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 7.866 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 7.866 [javac] import loci.common.ReflectedUniverse;
#17 7.866 [javac] ^
#17 8.267 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.267 [javac] core.size() != reader.getCoreMetadataList().size())
#17 8.267 [javac] ^
#17 8.267 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.267 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 8.267 [javac] ^
#17 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.367 [javac] int n = reader.getCoreMetadataList().size();
#17 8.367 [javac] ^
#17 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 8.367 [javac] reader.setCoreIndex(coreIndex);
#17 8.367 [javac] ^
#17 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.367 [javac] int n = reader.getCoreMetadataList().size();
#17 8.367 [javac] ^
#17 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.367 [javac] int n = reader.getCoreMetadataList().size();
#17 8.367 [javac] ^
#17 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 8.367 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 8.367 [javac] ^
#17 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.367 [javac] int n = reader.getCoreMetadataList().size();
#17 8.367 [javac] ^
#17 8.367 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 8.367 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 8.367 [javac] ^
#17 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.368 [javac] int n = reader.getCoreMetadataList().size();
#17 8.368 [javac] ^
#17 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 8.368 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 8.368 [javac] ^
#17 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 8.368 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 8.368 [javac] ^
#17 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 8.368 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 8.368 [javac] ^
#17 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.368 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 8.368 [javac] ^
#17 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.368 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 8.368 [javac] ^
#17 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.368 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 8.368 [javac] ^
#17 8.368 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.369 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 8.369 [javac] ^
#17 8.369 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.369 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 8.369 [javac] ^
#17 8.369 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.369 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 8.369 [javac] ^
#17 8.469 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.469 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 8.469 [javac] ^
#17 8.569 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 8.569 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 8.569 [javac] ^
#17 8.569 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 8.569 [javac] URL url = new URL(urlPath);
#17 8.569 [javac] ^
#17 8.670 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 8.670 [javac] BitWriter out = new BitWriter();
#17 8.670 [javac] ^
#17 8.670 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 8.670 [javac] BitWriter out = new BitWriter();
#17 8.670 [javac] ^
#17 8.770 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.770 [javac] return new Double(v);
#17 8.770 [javac] ^
#17 9.271 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 9.271 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 9.271 [javac] ^
#17 9.271 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 9.271 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 9.271 [javac] ^
#17 9.271 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.271 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 9.271 [javac] ^
#17 9.371 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.371 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 9.371 [javac] ^
#17 9.571 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.571 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 9.571 [javac] ^
#17 9.671 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 9.672 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 9.672 [javac] ^
#17 9.672 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.672 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 9.672 [javac] ^
#17 9.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.772 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 9.772 [javac] ^
#17 9.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.772 [javac] protected ReflectedUniverse r;
#17 9.772 [javac] ^
#17 9.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.772 [javac] r = new ReflectedUniverse();
#17 9.772 [javac] ^
#17 9.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#17 9.772 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 9.772 [javac] ^
#17 9.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#17 9.772 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 9.772 [javac] ^
#17 9.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#17 9.772 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 9.772 [javac] ^
#17 9.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 9.772 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 9.772 [javac] ^
#17 9.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1111: warning: [deprecation] MM in UNITS has been deprecated
#17 9.772 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 9.772 [javac] ^
#17 9.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1115: warning: [deprecation] MM in UNITS has been deprecated
#17 9.772 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 9.772 [javac] ^
#17 9.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1121: warning: [deprecation] MM in UNITS has been deprecated
#17 9.772 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 9.772 [javac] ^
#17 9.772 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1169: warning: [deprecation] MM in UNITS has been deprecated
#17 9.772 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 9.772 [javac] ^
#17 9.773 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1174: warning: [deprecation] MM in UNITS has been deprecated
#17 9.773 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 9.773 [javac] ^
#17 9.873 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.873 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.873 [javac] ^
#17 9.873 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.873 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.873 [javac] ^
#17 9.873 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.873 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.873 [javac] ^
#17 9.873 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.873 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.873 [javac] ^
#17 9.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 9.974 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 9.974 [javac] ^
#17 9.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.974 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 9.974 [javac] ^
#17 9.974 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.974 [javac] result[i] = new Double(readNumber().doubleValue());
#17 9.974 [javac] ^
#17 9.974 [javac] Note: Some input files use unchecked or unsafe operations.
#17 9.974 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 9.974 [javac] 56 warnings
#17 10.00
#17 10.00 formats-bsd.jar:
#17 10.01 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 10.13 [resolver:install] Using default POM (ome:formats-bsd:8.5.0-SNAPSHOT)
#17 10.13 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.pom
#17 10.18 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.jar
#17 10.18 [resolver:install] Installing ome:formats-bsd:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 10.18 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 10.18
#17 10.18 deps-formats-gpl:
#17 10.18
#17 10.18 jar-formats-gpl:
#17 10.32 [echo] isSnapshot = true
#17 10.46
#17 10.46 init-title:
#17 10.46 [echo] ----------=========== formats-gpl ===========----------
#17 10.46
#17 10.46 init-timestamp:
#17 10.46
#17 10.46 init:
#17 10.46
#17 10.46 copy-resources:
#17 10.46 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 10.46 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 10.46
#17 10.46 compile:
#17 10.83 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 11.30 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 11.69 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#17 11.73 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 11.90 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 12.02 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#17 12.03 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 12.26 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 12.38 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#17 12.42 [resolver:resolve] Resolving artifacts
#17 12.43 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 12.43 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 12.68 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 12.68 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 14.56 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#17 14.56 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 15.31 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#17 15.32 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 15.63 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 15.63 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 15.63 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 15.63 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 15.63 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 15.63 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 16.83 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.83 [javac] import loci.formats.codec.BitWriter;
#17 16.83 [javac] ^
#17 16.93 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.93 [javac] import loci.formats.codec.BitWriter;
#17 16.93 [javac] ^
#17 18.93 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 18.93 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 18.93 [javac] ^
#17 18.93 [javac] cast to Object for a varargs call
#17 18.93 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 19.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 19.04 [javac] BitWriter bits = null;
#17 19.04 [javac] ^
#17 19.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 19.04 [javac] bits = new BitWriter(planes[index].length / 8);
#17 19.04 [javac] ^
#17 19.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 19.34 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 19.34 [javac] ^
#17 19.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 19.74 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 19.74 [javac] ^
#17 19.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 19.74 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 19.74 [javac] ^
#17 19.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 19.74 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 19.74 [javac] ^
#17 19.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 19.74 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 19.74 [javac] ^
#17 20.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 20.04 [javac] Variable variable = group.findVariable(variableName);
#17 20.04 [javac] ^
#17 20.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 20.04 [javac] Variable variable = group.findVariable(variableName);
#17 20.04 [javac] ^
#17 20.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 20.04 [javac] List<Attribute> attributes = variable.getAttributes();
#17 20.04 [javac] ^
#17 20.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 20.04 [javac] String groupName = group.getName();
#17 20.04 [javac] ^
#17 20.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 20.04 [javac] List<Attribute> attributes = group.getAttributes();
#17 20.04 [javac] ^
#17 20.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 20.04 [javac] String variableName = variable.getName();
#17 20.04 [javac] ^
#17 20.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 20.04 [javac] Group nextParent = parent.findGroup(token);
#17 20.04 [javac] ^
#17 20.04 [javac] Note: Some input files use unchecked or unsafe operations.
#17 20.04 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 20.04 [javac] 21 warnings
#17 20.05
#17 20.05 formats-gpl.jar:
#17 20.06 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 20.21 [resolver:install] Using default POM (ome:formats-gpl:8.5.0-SNAPSHOT)
#17 20.22 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.pom
#17 20.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.jar
#17 20.22 [resolver:install] Installing ome:formats-gpl:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 20.22 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 20.22
#17 20.22 deps-bio-formats-plugins:
#17 20.22
#17 20.22 jar-bio-formats-plugins:
#17 20.32 [echo] isSnapshot = true
#17 20.48
#17 20.48 init-title:
#17 20.48 [echo] ----------=========== bio-formats_plugins ===========----------
#17 20.48
#17 20.48 init-timestamp:
#17 20.48
#17 20.48 init:
#17 20.48
#17 20.48 copy-resources:
#17 20.48 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 20.48 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 20.48
#17 20.48 compile:
#17 20.74 [resolver:resolve] Resolving artifacts
#17 20.76 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 21.06 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 21.06 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 21.06 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 21.06 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 21.06 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 21.06 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 21.86 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.86 [javac] import loci.common.ReflectedUniverse;
#17 21.86 [javac] ^
#17 21.86 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.86 [javac] import loci.common.ReflectedUniverse;
#17 21.86 [javac] ^
#17 22.36 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 22.36 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 22.36 [javac] ^
#17 22.46 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 22.46 [javac] URL url = new URL(urlPath);
#17 22.46 [javac] ^
#17 22.46 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 22.46 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 22.46 [javac] ^
#17 22.46 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 22.46 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 22.46 [javac] ^
#17 22.66 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 22.66 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 22.66 [javac] ^
#17 22.66 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 22.66 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 22.66 [javac] ^
#17 22.87 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 22.87 [javac] url = new URL(path);
#17 22.87 [javac] ^
#17 23.05 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 23.05 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 23.05 [javac] 13 warnings
#17 23.05
#17 23.05 bio-formats-plugins.jar:
#17 23.06 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 23.09 [resolver:install] Using default POM (ome:bio-formats_plugins:8.5.0-SNAPSHOT)
#17 23.09 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.pom
#17 23.13 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.jar
#17 23.13 [resolver:install] Installing ome:bio-formats_plugins:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 23.14 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 23.14
#17 23.14 deps-bio-formats-tools:
#17 23.14
#17 23.14 jar-bio-formats-tools:
#17 23.24 [echo] isSnapshot = true
#17 23.38
#17 23.38 init-title:
#17 23.38 [echo] ----------=========== bio-formats-tools ===========----------
#17 23.38
#17 23.38 init-timestamp:
#17 23.38
#17 23.38 init:
#17 23.38
#17 23.38 copy-resources:
#17 23.38 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 23.38
#17 23.38 compile:
#17 23.62 [resolver:resolve] Resolving artifacts
#17 23.63 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 23.84 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 23.84 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 23.84 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 23.84 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 23.84 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 23.84 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 25.04 [javac] 4 warnings
#17 25.06
#17 25.06 bio-formats-tools.jar:
#17 25.06 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 25.07 [resolver:install] Using default POM (ome:bio-formats-tools:8.5.0-SNAPSHOT)
#17 25.07 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.pom
#17 25.11 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.jar
#17 25.11 [resolver:install] Installing ome:bio-formats-tools:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 25.12 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 25.12
#17 25.12 deps-tests:
#17 25.12
#17 25.12 jar-tests:
#17 25.20 [echo] isSnapshot = true
#17 25.33
#17 25.33 init-title:
#17 25.33 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 25.33
#17 25.33 init-timestamp:
#17 25.33
#17 25.33 init:
#17 25.33
#17 25.33 copy-resources:
#17 25.33 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 25.33
#17 25.33 compile:
#17 25.62 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 25.72 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 26.08 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 26.09 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 26.64 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 27.07 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 27.08 [resolver:resolve] Resolving artifacts
#17 27.09 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 27.15 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 27.51 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 27.51 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 28.06 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 28.42 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 28.42 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 28.63 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 28.63 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 28.63 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 28.63 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 28.63 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 28.73 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 29.73 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 29.73 [javac] int index = unflattenedReader.getCoreIndex();
#17 29.73 [javac] ^
#17 29.73 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 29.73 [javac] reader.setCoreIndex(index);
#17 29.73 [javac] ^
#17 29.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 29.93 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 29.93 [javac] ^
#17 29.93 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 29.93 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 29.93 [javac] ^
#17 30.23 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 30.23 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 30.23 [javac] ^
#17 30.23 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 30.23 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 30.23 [javac] ^
#17 30.23 [javac] Note: Some input files use unchecked or unsafe operations.
#17 30.23 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 30.23 [javac] 10 warnings
#17 30.26
#17 30.26 tests.jar:
#17 30.27 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 30.28 [resolver:install] Using default POM (ome:test-suite:8.5.0-SNAPSHOT)
#17 30.28 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.pom
#17 30.28 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.jar
#17 30.29 [resolver:install] Installing ome:test-suite:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 30.29 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 30.29
#17 30.29 jars:
#17 30.29
#17 30.29 copy-jars:
#17 30.29
#17 30.29 deps-formats-api:
#17 30.34 [echo] isSnapshot = true
#17 30.38
#17 30.38 install-pom:
#17 30.50 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/pom-bio-formats-8.5.0-SNAPSHOT.pom
#17 30.51 [resolver:install] Installing ome:pom-bio-formats:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 30.51 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 30.51
#17 30.51 jar-formats-api:
#17 30.59 [echo] isSnapshot = true
#17 30.72
#17 30.72 init-title:
#17 30.72 [echo] ----------=========== formats-api ===========----------
#17 30.72
#17 30.72 init-timestamp:
#17 30.72
#17 30.72 init:
#17 30.72
#17 30.72 copy-resources:
#17 30.72
#17 30.72 compile:
#17 30.88 [resolver:resolve] Resolving artifacts
#17 30.89
#17 30.89 formats-api.jar:
#17 30.91 [resolver:install] Using default POM (ome:formats-api:8.5.0-SNAPSHOT)
#17 30.91 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.pom
#17 30.91 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.jar
#17 30.91 [resolver:install] Installing ome:formats-api:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 30.91 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 30.91
#17 30.91 deps-turbojpeg:
#17 30.91
#17 30.91 jar-turbojpeg:
#17 31.00 [echo] isSnapshot = true
#17 31.12
#17 31.12 init-title:
#17 31.12 [echo] ----------=========== turbojpeg ===========----------
#17 31.12
#17 31.12 init-timestamp:
#17 31.12
#17 31.12 init:
#17 31.12
#17 31.12 copy-resources:
#17 31.12
#17 31.12 compile:
#17 31.13 [resolver:resolve] Resolving artifacts
#17 31.13
#17 31.13 jar:
#17 31.14 [resolver:install] Using default POM (ome:turbojpeg:8.5.0-SNAPSHOT)
#17 31.14 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.pom
#17 31.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.jar
#17 31.15 [resolver:install] Installing ome:turbojpeg:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 31.15 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
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#17 31.35 [echo] ----------=========== formats-bsd ===========----------
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#17 31.60 [resolver:install] Using default POM (ome:formats-bsd:8.5.0-SNAPSHOT)
#17 31.60 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.pom
#17 31.60 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.jar
#17 31.60 [resolver:install] Installing ome:formats-bsd:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 31.60 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
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#17 31.82 [echo] ----------=========== formats-gpl ===========----------
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#17 32.09 [resolver:install] Using default POM (ome:formats-gpl:8.5.0-SNAPSHOT)
#17 32.10 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.pom
#17 32.10 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.jar
#17 32.10 [resolver:install] Installing ome:formats-gpl:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 32.10 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
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#17 32.58 [resolver:install] Using default POM (ome:bio-formats_plugins:8.5.0-SNAPSHOT)
#17 32.58 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.pom
#17 32.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.jar
#17 32.58 [resolver:install] Installing ome:bio-formats_plugins:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 32.58 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
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#17 32.80 [echo] ----------=========== bio-formats-tools ===========----------
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#17 33.05 [resolver:install] Using default POM (ome:bio-formats-tools:8.5.0-SNAPSHOT)
#17 33.06 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.pom
#17 33.06 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.jar
#17 33.06 [resolver:install] Installing ome:bio-formats-tools:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 33.06 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
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#17 33.06
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#17 33.27 [echo] ----------=========== bio-formats-testing-framework ===========----------
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#17 33.52 tests.jar:
#17 33.53 [resolver:install] Using default POM (ome:test-suite:8.5.0-SNAPSHOT)
#17 33.53 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.pom
#17 33.53 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.jar
#17 33.54 [resolver:install] Installing ome:test-suite:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 33.54 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 33.54
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#17 33.54 tools:
#17 33.54 [echo] ----------=========== bioformats_package ===========----------
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#17 34.03 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.3-SNAPSHOT/ome-common-6.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.05 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.07 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.08 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.13 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.15 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.20 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.20 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.41 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.45 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.47 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.52 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.53 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.54 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.54 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.70 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 35.23 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.4-SNAPSHOT/ome-xml-6.5.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 37.92 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.93 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.94 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.94 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.97 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.33 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.16/logback-core-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.42 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.16/logback-classic-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.81 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 45.53 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 46.08 [resolver:install] Using default POM (ome:bioformats_package:8.5.0-SNAPSHOT)
#17 46.09 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/bioformats_package-8.5.0-SNAPSHOT.pom
#17 46.09 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/bioformats_package-8.5.0-SNAPSHOT.jar
#17 46.13 [resolver:install] Installing ome:bioformats_package:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 46.14 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 46.14
#17 46.14 BUILD SUCCESSFUL
#17 46.14 Total time: 45 seconds
#17 DONE 46.4s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.0s
#19 exporting to image
#19 exporting layers
#19 exporting layers 3.3s done
#19 writing image sha256:5df8b6212ff77ac7c29c92501cc20c5992254c254ff2ae13b3f738059626f470 done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 3.3s
Finished: SUCCESS
