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#15 410.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-velocity/2.3.0/plexus-velocity-2.3.0.jar
#15 410.6 Progress (4): 1.1/1.4 MB | 92 kB | 17 kB | 4.1/19 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-site-model/2.1.0/doxia-site-model-2.1.0.jar (92 kB at 195 kB/s)
#15 410.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/velocity/velocity-engine-core/2.4.1/velocity-engine-core-2.4.1.jar
#15 410.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xhtml5/2.1.0/doxia-module-xhtml5-2.1.0.jar (17 kB at 35 kB/s)
#15 410.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.20.0/commons-lang3-3.20.0.jar
#15 410.6 Progress (3): 1.4 MB | 19 kB | 4.1/6.2 kB
Progress (3): 1.4 MB | 19 kB | 6.2 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-skin-model/2.1.0/doxia-skin-model-2.1.0.jar (19 kB at 39 kB/s)
#15 410.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-site-renderer/2.1.0/doxia-site-renderer-2.1.0.jar (1.4 MB at 2.8 MB/s)
#15 410.7 Progress (2): 6.2 kB | 4.1/516 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-velocity/2.3.0/plexus-velocity-2.3.0.jar (6.2 kB at 12 kB/s)
#15 410.7 Progress (1): 32/516 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/velocity/velocity-engine-core/2.4.1/velocity-engine-core-2.4.1.jar (516 kB at 886 kB/s)
#15 410.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.20.0/commons-lang3-3.20.0.jar (714 kB at 1.2 MB/s)
#15 410.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.7/nexus-staging-maven-plugin-1.6.7.pom
#15 410.9 Progress (1): 4.1 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.7/nexus-staging-maven-plugin-1.6.7.pom (12 kB at 183 kB/s)
#15 411.0 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-staging/1.6.7/nexus-staging-1.6.7.pom
#15 411.0 Progress (1): 2.8 kB
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#15 411.0 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-maven-plugins/1.6.7/nexus-maven-plugins-1.6.7.pom
#15 411.1 Progress (1): 4.1 kB
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#15 411.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-common/1.6.7/nexus-common-1.6.7.pom
#15 411.1 Progress (1): 2.2 kB
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#15 411.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.9.1-02/nexus-client-core-2.9.1-02.pom
#15 411.2 Progress (1): 4.1 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.9.1-02/nexus-client-core-2.9.1-02.pom (4.9 kB at 77 kB/s)
#15 411.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-components/2.9.1-02/nexus-components-2.9.1-02.pom
#15 411.3 Progress (1): 2.6 kB
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#15 411.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-oss/2.9.1-02/nexus-oss-2.9.1-02.pom
#15 411.3 Progress (1): 4.1 kB
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#15 411.4 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-all/2.9.1-02/nexus-buildsupport-all-2.9.1-02.pom
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#15 414.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/3.1.1/maven-repository-metadata-3.1.1.jar
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#15 414.9 [output clipped, log limit 2MiB reached]
#15 464.3 WARNING: A restricted method in java.lang.System has been called
#15 464.3 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 464.3 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 464.3 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 464.3
#15 513.3 SLF4J: No SLF4J providers were found.
#15 513.3 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 513.3 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 513.6 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 513.6 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 513.6 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 513.6 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 522.0s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.0s
#17 [13/14] RUN ant jars tools
#17 0.267 Buildfile: /bio-formats-build/bioformats/build.xml
#17 0.642 [echo] isSnapshot = true
#17 2.750
#17 2.750 copy-jars:
#17 2.750
#17 2.750 deps-formats-api:
#17 2.831 [echo] isSnapshot = true
#17 2.885
#17 2.885 install-pom:
#17 3.065 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/pom-bio-formats-9.0.0-SNAPSHOT.pom
#17 3.081 [resolver:install] Installing ome:pom-bio-formats:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 3.085 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 3.086
#17 3.086 jar-formats-api:
#17 3.200 [echo] isSnapshot = true
#17 3.376
#17 3.376 init-title:
#17 3.377 [echo] ----------=========== formats-api ===========----------
#17 3.377
#17 3.377 init-timestamp:
#17 3.385
#17 3.385 init:
#17 3.385
#17 3.385 copy-resources:
#17 3.386 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.401 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.403
#17 3.403 compile:
#17 3.576 [resolver:resolve] Resolving artifacts
#17 3.602 [javac] Compiling 59 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.814 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 3.815 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 3.815 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 4.816 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 4.816 [javac] int currentIndex = r.getCoreIndex();
#17 4.816 [javac] ^
#17 4.816 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.816 [javac] r.setCoreIndex(coreIndex);
#17 4.816 [javac] ^
#17 4.816 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.816 [javac] r.setCoreIndex(currentIndex);
#17 4.816 [javac] ^
#17 4.916 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.916 [javac] public void setCoreIndex(int no) {
#17 4.917 [javac] ^
#17 4.917 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 4.917 [javac] public int getCoreIndex() {
#17 4.917 [javac] ^
#17 4.917 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 4.917 [javac] public int coreIndexToSeries(int index)
#17 4.917 [javac] ^
#17 4.917 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 4.917 [javac] public int seriesToCoreIndex(int series)
#17 4.917 [javac] ^
#17 4.917 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 4.917 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 4.917 [javac] ^
#17 5.018 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.018 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 5.018 [javac] ^
#17 5.018 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.018 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 5.018 [javac] ^
#17 5.018 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.018 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 5.018 [javac] ^
#17 5.018 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.018 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 5.018 [javac] ^
#17 5.119 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 5.119 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 5.119 [javac] ^
#17 5.119 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 5.119 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 5.119 [javac] ^
#17 5.119 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 5.119 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 5.119 [javac] ^
#17 5.219 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:791: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.219 [javac] public void setCoreIndex(int no) {
#17 5.219 [javac] ^
#17 5.219 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.219 [javac] public int getCoreIndex() {
#17 5.220 [javac] ^
#17 5.220 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:801: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.220 [javac] public int coreIndexToSeries(int index) {
#17 5.220 [javac] ^
#17 5.220 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:796: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.220 [javac] public int seriesToCoreIndex(int series) {
#17 5.220 [javac] ^
#17 5.220 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:605: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.220 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.220 [javac] ^
#17 5.220 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:606: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.220 [javac] return getReader().getCoreMetadataList();
#17 5.220 [javac] ^
#17 5.220 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:786: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.220 [javac] return getReader().getCoreIndex();
#17 5.220 [javac] ^
#17 5.220 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:792: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.220 [javac] getReader().setCoreIndex(no);
#17 5.221 [javac] ^
#17 5.221 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:797: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.221 [javac] return getReader().seriesToCoreIndex(series);
#17 5.221 [javac] ^
#17 5.221 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:802: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.221 [javac] return getReader().coreIndexToSeries(index);
#17 5.221 [javac] ^
#17 5.321 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.321 [javac] public void setCoreIndex(int no) {
#17 5.321 [javac] ^
#17 5.321 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.321 [javac] public int getCoreIndex() {
#17 5.321 [javac] ^
#17 5.321 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.322 [javac] public int coreIndexToSeries(int index) {
#17 5.322 [javac] ^
#17 5.322 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.322 [javac] public int seriesToCoreIndex(int series) {
#17 5.322 [javac] ^
#17 5.322 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.322 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.322 [javac] ^
#17 5.322 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.322 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 5.322 [javac] ^
#17 5.322 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.322 [javac] return reader.getCoreIndex();
#17 5.322 [javac] ^
#17 5.322 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.322 [javac] reader.setCoreIndex(no);
#17 5.322 [javac] ^
#17 5.322 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.322 [javac] return reader.seriesToCoreIndex(series);
#17 5.322 [javac] ^
#17 5.322 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.322 [javac] return reader.coreIndexToSeries(index);
#17 5.322 [javac] ^
#17 5.499 [javac] Note: Some input files use unchecked or unsafe operations.
#17 5.499 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 5.499 [javac] 36 warnings
#17 5.500
#17 5.500 formats-api.jar:
#17 5.500 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 5.527 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 5.570 [resolver:install] Using default POM (ome:formats-api:9.0.0-SNAPSHOT)
#17 5.574 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.pom
#17 5.582 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar
#17 5.583 [resolver:install] Installing ome:formats-api:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 5.586 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 5.587
#17 5.587 deps-turbojpeg:
#17 5.587
#17 5.587 jar-turbojpeg:
#17 5.692 [echo] isSnapshot = true
#17 5.835
#17 5.835 init-title:
#17 5.835 [echo] ----------=========== turbojpeg ===========----------
#17 5.835
#17 5.835 init-timestamp:
#17 5.835
#17 5.835 init:
#17 5.835
#17 5.835 copy-resources:
#17 5.836 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 5.837
#17 5.837 compile:
#17 5.846 [resolver:resolve] Resolving artifacts
#17 5.850 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 6.053 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 6.053 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 6.053 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 6.753 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.753 [javac] protected void finalize() throws Throwable {
#17 6.753 [javac] ^
#17 6.753 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.753 [javac] super.finalize();
#17 6.753 [javac] ^
#17 6.753 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.753 [javac] protected void finalize() throws Throwable {
#17 6.754 [javac] ^
#17 6.754 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.754 [javac] super.finalize();
#17 6.754 [javac] ^
#17 6.783 [javac] 5 warnings
#17 6.783
#17 6.783 jar:
#17 6.787 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 6.974 [resolver:install] Using default POM (ome:turbojpeg:9.0.0-SNAPSHOT)
#17 6.982 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.pom
#17 6.983 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar
#17 6.986 [resolver:install] Installing ome:turbojpeg:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 6.989 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 6.990
#17 6.990 deps-formats-bsd:
#17 6.990
#17 6.990 jar-formats-bsd:
#17 7.110 [echo] isSnapshot = true
#17 7.253
#17 7.253 init-title:
#17 7.253 [echo] ----------=========== formats-bsd ===========----------
#17 7.253
#17 7.253 init-timestamp:
#17 7.254
#17 7.254 init:
#17 7.254
#17 7.254 copy-resources:
#17 7.254 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.257 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.258
#17 7.258 compile:
#17 7.483 [resolver:resolve] Resolving artifacts
#17 7.510 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.726 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 7.727 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 7.727 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 9.428 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.428 [javac] core.size() != reader.getCoreMetadataList().size())
#17 9.428 [javac] ^
#17 9.428 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.428 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 9.428 [javac] ^
#17 9.428 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.428 [javac] int n = reader.getCoreMetadataList().size();
#17 9.428 [javac] ^
#17 9.428 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 9.428 [javac] reader.setCoreIndex(coreIndex);
#17 9.429 [javac] ^
#17 9.429 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.429 [javac] int n = reader.getCoreMetadataList().size();
#17 9.429 [javac] ^
#17 9.429 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.429 [javac] int n = reader.getCoreMetadataList().size();
#17 9.429 [javac] ^
#17 9.429 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 9.429 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 9.429 [javac] ^
#17 9.429 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.429 [javac] int n = reader.getCoreMetadataList().size();
#17 9.429 [javac] ^
#17 9.429 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 9.429 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 9.429 [javac] ^
#17 9.429 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.429 [javac] int n = reader.getCoreMetadataList().size();
#17 9.429 [javac] ^
#17 9.429 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 9.429 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 9.429 [javac] ^
#17 9.429 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 9.429 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 9.429 [javac] ^
#17 9.429 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 9.430 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 9.430 [javac] ^
#17 9.430 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.430 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 9.430 [javac] ^
#17 9.430 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.430 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 9.430 [javac] ^
#17 9.430 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.430 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 9.430 [javac] ^
#17 9.430 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.430 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 9.430 [javac] ^
#17 9.430 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.430 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 9.430 [javac] ^
#17 9.530 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.530 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 9.530 [javac] ^
#17 9.631 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.631 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 9.631 [javac] ^
#17 9.631 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:70: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.631 [javac] public static final String STABLE_VERSION = "6.6.0";
#17 9.631 [javac] ^
#17 9.631 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:101: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.631 [javac] public static final String OLD_TOOLS = "loci_tools.jar";
#17 9.631 [javac] ^
#17 9.631 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 9.631 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 9.631 [javac] ^
#17 9.631 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 9.631 [javac] URL url = new URL(urlPath);
#17 9.632 [javac] ^
#17 9.732 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitBuffer.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.732 [javac] public class BitBuffer {
#17 9.732 [javac] ^
#17 9.732 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitWriter.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.732 [javac] public class BitWriter {
#17 9.732 [javac] ^
#17 9.732 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 9.732 [javac] BitWriter out = new BitWriter();
#17 9.732 [javac] ^
#17 9.732 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 9.732 [javac] BitWriter out = new BitWriter();
#17 9.732 [javac] ^
#17 9.832 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:534: warning: [deprecation] Double(String) in Double has been deprecated
#17 9.832 [javac] return new Double(v);
#17 9.833 [javac] ^
#17 10.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2214: warning: [deprecation] Double(String) in Double has been deprecated
#17 10.43 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 10.43 [javac] ^
#17 10.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2221: warning: [deprecation] Double(String) in Double has been deprecated
#17 10.43 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 10.43 [javac] ^
#17 10.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2228: warning: [deprecation] Double(double) in Double has been deprecated
#17 10.43 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 10.43 [javac] ^
#17 10.63 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#17 10.63 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 10.63 [javac] ^
#17 10.73 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.73 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 10.73 [javac] ^
#17 10.83 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1376: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 10.83 [javac] public MetadataStore getMetadataStoreForDisplay() {
#17 10.83 [javac] ^
#17 10.83 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1394: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 10.83 [javac] public MetadataStore getMetadataStoreForConversion() {
#17 10.83 [javac] ^
#17 10.83 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 10.83 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 10.83 [javac] ^
#17 10.93 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [deprecation] Double(double) in Double has been deprecated
#17 10.93 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 10.93 [javac] ^
#17 10.93 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.93 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 10.93 [javac] ^
#17 10.93 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 10.93 [javac] protected ReflectedUniverse r;
#17 10.93 [javac] ^
#17 10.94 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 10.94 [javac] r = new ReflectedUniverse();
#17 10.94 [javac] ^
#17 11.04 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1044: warning: [deprecation] NM in UNITS has been deprecated
#17 11.04 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 11.04 [javac] ^
#17 11.04 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1076: warning: [deprecation] MM in UNITS has been deprecated
#17 11.04 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 11.04 [javac] ^
#17 11.04 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 11.04 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 11.04 [javac] ^
#17 11.04 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1091: warning: [deprecation] MM in UNITS has been deprecated
#17 11.04 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 11.04 [javac] ^
#17 11.04 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#17 11.04 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 11.04 [javac] ^
#17 11.04 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1116: warning: [deprecation] MM in UNITS has been deprecated
#17 11.04 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 11.04 [javac] ^
#17 11.04 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1122: warning: [deprecation] MM in UNITS has been deprecated
#17 11.04 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 11.04 [javac] ^
#17 11.04 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#17 11.04 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 11.04 [javac] ^
#17 11.04 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1175: warning: [deprecation] MM in UNITS has been deprecated
#17 11.04 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 11.04 [javac] ^
#17 11.14 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Integer(int) in Integer has been deprecated
#17 11.14 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 11.14 [javac] ^
#17 11.14 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Long(long) in Long has been deprecated
#17 11.14 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 11.14 [javac] ^
#17 11.14 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Integer(int) in Integer has been deprecated
#17 11.14 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 11.14 [javac] ^
#17 11.14 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Long(long) in Long has been deprecated
#17 11.14 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 11.14 [javac] ^
#17 11.14 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:113: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 11.14 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 11.14 [javac] ^
#17 11.14 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:324: warning: [deprecation] Double(double) in Double has been deprecated
#17 11.14 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 11.14 [javac] ^
#17 11.14 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:346: warning: [deprecation] Double(double) in Double has been deprecated
#17 11.14 [javac] result[i] = new Double(readNumber().doubleValue());
#17 11.14 [javac] ^
#17 11.20 [javac] Note: Some input files use unchecked or unsafe operations.
#17 11.20 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 11.20 [javac] 58 warnings
#17 11.20
#17 11.20 formats-bsd.jar:
#17 11.21 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 11.33 [resolver:install] Using default POM (ome:formats-bsd:9.0.0-SNAPSHOT)
#17 11.33 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.pom
#17 11.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar
#17 11.33 [resolver:install] Installing ome:formats-bsd:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 11.34 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 11.34
#17 11.34 deps-formats-gpl:
#17 11.34
#17 11.34 jar-formats-gpl:
#17 11.43 [echo] isSnapshot = true
#17 11.57
#17 11.57 init-title:
#17 11.57 [echo] ----------=========== formats-gpl ===========----------
#17 11.57
#17 11.57 init-timestamp:
#17 11.57
#17 11.57 init:
#17 11.57
#17 11.57 copy-resources:
#17 11.57 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 11.57 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 11.57
#17 11.57 compile:
#17 11.82 [resolver:resolve] Resolving artifacts
#17 11.85 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 12.06 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 12.06 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 12.06 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 15.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1325: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 15.36 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 15.36 [javac] ^
#17 15.36 [javac] cast to Object for a varargs call
#17 15.36 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 15.36 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.36 [javac] BitWriter bits = null;
#17 15.36 [javac] ^
#17 15.46 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.46 [javac] bits = new BitWriter(planes[index].length / 8);
#17 15.46 [javac] ^
#17 15.76 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 15.76 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 15.76 [javac] ^
#17 16.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 16.16 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 16.16 [javac] ^
#17 16.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 16.16 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 16.16 [javac] ^
#17 16.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.16 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.16 [javac] ^
#17 16.16 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.16 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.16 [javac] ^
#17 16.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 16.43 [javac] Variable variable = group.findVariable(variableName);
#17 16.43 [javac] ^
#17 16.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 16.43 [javac] Variable variable = group.findVariable(variableName);
#17 16.43 [javac] ^
#17 16.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 16.43 [javac] List<Attribute> attributes = variable.getAttributes();
#17 16.43 [javac] ^
#17 16.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 16.43 [javac] String groupName = group.getName();
#17 16.43 [javac] ^
#17 16.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 16.43 [javac] List<Attribute> attributes = group.getAttributes();
#17 16.43 [javac] ^
#17 16.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 16.43 [javac] String variableName = variable.getName();
#17 16.43 [javac] ^
#17 16.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 16.43 [javac] Group nextParent = parent.findGroup(token);
#17 16.43 [javac] ^
#17 16.43 [javac] Note: Some input files use unchecked or unsafe operations.
#17 16.43 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 16.43 [javac] 16 warnings
#17 16.43
#17 16.43 formats-gpl.jar:
#17 16.44 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 16.59 [resolver:install] Using default POM (ome:formats-gpl:9.0.0-SNAPSHOT)
#17 16.60 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.pom
#17 16.60 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar
#17 16.60 [resolver:install] Installing ome:formats-gpl:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 16.60 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 16.61
#17 16.61 deps-bio-formats-plugins:
#17 16.61
#17 16.61 jar-bio-formats-plugins:
#17 16.72 [echo] isSnapshot = true
#17 16.86
#17 16.86 init-title:
#17 16.86 [echo] ----------=========== bio-formats_plugins ===========----------
#17 16.86
#17 16.86 init-timestamp:
#17 16.86
#17 16.86 init:
#17 16.86
#17 16.86 copy-resources:
#17 16.86 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 16.86 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 16.86
#17 16.86 compile:
#17 17.13 [resolver:resolve] Resolving artifacts
#17 17.14 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.35 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 17.35 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 17.35 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 18.75 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 18.75 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 18.75 [javac] ^
#17 18.85 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 18.85 [javac] URL url = new URL(urlPath);
#17 18.85 [javac] ^
#17 18.95 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.95 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 18.95 [javac] ^
#17 18.95 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.95 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 18.95 [javac] ^
#17 19.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.05 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.05 [javac] ^
#17 19.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.05 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.05 [javac] ^
#17 19.25 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 19.25 [javac] url = new URL(path);
#17 19.25 [javac] ^
#17 19.42 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 19.42 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 19.42 [javac] 8 warnings
#17 19.42
#17 19.42 bio-formats-plugins.jar:
#17 19.43 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 19.46 [resolver:install] Using default POM (ome:bio-formats_plugins:9.0.0-SNAPSHOT)
#17 19.46 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.pom
#17 19.46 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar
#17 19.46 [resolver:install] Installing ome:bio-formats_plugins:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 19.47 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 19.47
#17 19.47 deps-bio-formats-tools:
#17 19.47
#17 19.47 jar-bio-formats-tools:
#17 19.55 [echo] isSnapshot = true
#17 19.71
#17 19.71 init-title:
#17 19.71 [echo] ----------=========== bio-formats-tools ===========----------
#17 19.71
#17 19.71 init-timestamp:
#17 19.71
#17 19.71 init:
#17 19.71
#17 19.71 copy-resources:
#17 19.71 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 19.71
#17 19.71 compile:
#17 19.95 [resolver:resolve] Resolving artifacts
#17 19.96 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 20.16 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 20.16 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 20.16 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 21.36 [javac] 1 warning
#17 21.36
#17 21.36 bio-formats-tools.jar:
#17 21.36 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 21.37 [resolver:install] Using default POM (ome:bio-formats-tools:9.0.0-SNAPSHOT)
#17 21.37 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.pom
#17 21.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar
#17 21.38 [resolver:install] Installing ome:bio-formats-tools:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 21.38 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 21.38
#17 21.38 deps-tests:
#17 21.38
#17 21.38 jar-tests:
#17 21.47 [echo] isSnapshot = true
#17 21.60
#17 21.60 init-title:
#17 21.60 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 21.60
#17 21.60 init-timestamp:
#17 21.60
#17 21.60 init:
#17 21.60
#17 21.60 copy-resources:
#17 21.60 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 21.60
#17 21.60 compile:
#17 21.99 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.28 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.78 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.80 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.08 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.49 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 23.51 [resolver:resolve] Resolving artifacts
#17 23.51 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 23.59 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.05 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.06 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.32 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.71 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 24.72 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 24.93 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 24.93 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 24.93 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 26.13 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.13 [javac] int index = unflattenedReader.getCoreIndex();
#17 26.13 [javac] ^
#17 26.13 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 26.13 [javac] reader.setCoreIndex(index);
#17 26.13 [javac] ^
#17 26.43 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.43 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 26.43 [javac] ^
#17 26.43 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.43 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 26.43 [javac] ^
#17 26.73 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 26.73 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 26.73 [javac] ^
#17 26.73 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 26.73 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 26.73 [javac] ^
#17 26.73 [javac] Note: Some input files use unchecked or unsafe operations.
#17 26.73 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 26.73 [javac] 7 warnings
#17 26.73
#17 26.73 tests.jar:
#17 26.73 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 26.75 [resolver:install] Using default POM (ome:test-suite:9.0.0-SNAPSHOT)
#17 26.75 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.pom
#17 26.75 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.jar
#17 26.75 [resolver:install] Installing ome:test-suite:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 26.75 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 26.75
#17 26.75 jars:
#17 26.75
#17 26.75 copy-jars:
#17 26.75
#17 26.75 deps-formats-api:
#17 26.80 [echo] isSnapshot = true
#17 26.84
#17 26.84 install-pom:
#17 26.97 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/pom-bio-formats-9.0.0-SNAPSHOT.pom
#17 26.97 [resolver:install] Installing ome:pom-bio-formats:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 26.98 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 26.98
#17 26.98 jar-formats-api:
#17 27.08 [echo] isSnapshot = true
#17 27.21
#17 27.21 init-title:
#17 27.21 [echo] ----------=========== formats-api ===========----------
#17 27.21
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#17 27.21
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#17 27.33 [resolver:resolve] Resolving artifacts
#17 27.34
#17 27.34 formats-api.jar:
#17 27.36 [resolver:install] Using default POM (ome:formats-api:9.0.0-SNAPSHOT)
#17 27.36 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.pom
#17 27.36 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar
#17 27.36 [resolver:install] Installing ome:formats-api:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 27.37 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 27.37
#17 27.37 deps-turbojpeg:
#17 27.37
#17 27.37 jar-turbojpeg:
#17 27.46 [echo] isSnapshot = true
#17 27.62
#17 27.62 init-title:
#17 27.62 [echo] ----------=========== turbojpeg ===========----------
#17 27.62
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#17 27.63 [resolver:resolve] Resolving artifacts
#17 27.63
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#17 27.63 [resolver:install] Using default POM (ome:turbojpeg:9.0.0-SNAPSHOT)
#17 27.64 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.pom
#17 27.64 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar
#17 27.64 [resolver:install] Installing ome:turbojpeg:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 27.65 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 27.65
#17 27.65 deps-formats-bsd:
#17 27.65
#17 27.65 jar-formats-bsd:
#17 27.73 [echo] isSnapshot = true
#17 27.86
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#17 27.86 [echo] ----------=========== formats-bsd ===========----------
#17 27.86
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#17 27.86
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#17 28.05 [resolver:resolve] Resolving artifacts
#17 28.06
#17 28.06 formats-bsd.jar:
#17 28.09 [resolver:install] Using default POM (ome:formats-bsd:9.0.0-SNAPSHOT)
#17 28.10 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.pom
#17 28.10 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar
#17 28.10 [resolver:install] Installing ome:formats-bsd:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 28.10 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 28.10
#17 28.10 deps-formats-gpl:
#17 28.10
#17 28.10 jar-formats-gpl:
#17 28.20 [echo] isSnapshot = true
#17 28.32
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#17 28.32 [echo] ----------=========== formats-gpl ===========----------
#17 28.32
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#17 28.32
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#17 28.55 [resolver:resolve] Resolving artifacts
#17 28.57
#17 28.57 formats-gpl.jar:
#17 28.60 [resolver:install] Using default POM (ome:formats-gpl:9.0.0-SNAPSHOT)
#17 28.60 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.pom
#17 28.60 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar
#17 28.61 [resolver:install] Installing ome:formats-gpl:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 28.61 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 28.61
#17 28.61 deps-bio-formats-plugins:
#17 28.61
#17 28.61 jar-bio-formats-plugins:
#17 28.69 [echo] isSnapshot = true
#17 28.81
#17 28.81 init-title:
#17 28.81 [echo] ----------=========== bio-formats_plugins ===========----------
#17 28.81
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#17 28.82
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#17 28.82
#17 28.82 compile:
#17 29.06 [resolver:resolve] Resolving artifacts
#17 29.07
#17 29.07 bio-formats-plugins.jar:
#17 29.08 [resolver:install] Using default POM (ome:bio-formats_plugins:9.0.0-SNAPSHOT)
#17 29.08 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.pom
#17 29.08 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar
#17 29.09 [resolver:install] Installing ome:bio-formats_plugins:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 29.09 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 29.09
#17 29.09 deps-bio-formats-tools:
#17 29.09
#17 29.09 jar-bio-formats-tools:
#17 29.17 [echo] isSnapshot = true
#17 29.29
#17 29.29 init-title:
#17 29.29 [echo] ----------=========== bio-formats-tools ===========----------
#17 29.29
#17 29.29 init-timestamp:
#17 29.30
#17 29.30 init:
#17 29.30
#17 29.30 copy-resources:
#17 29.30
#17 29.30 compile:
#17 29.53 [resolver:resolve] Resolving artifacts
#17 29.54
#17 29.54 bio-formats-tools.jar:
#17 29.54 [resolver:install] Using default POM (ome:bio-formats-tools:9.0.0-SNAPSHOT)
#17 29.55 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.pom
#17 29.55 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar
#17 29.55 [resolver:install] Installing ome:bio-formats-tools:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 29.55 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 29.55
#17 29.55 deps-tests:
#17 29.55
#17 29.55 jar-tests:
#17 29.63 [echo] isSnapshot = true
#17 29.76
#17 29.76 init-title:
#17 29.76 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 29.76
#17 29.76 init-timestamp:
#17 29.76
#17 29.76 init:
#17 29.76
#17 29.76 copy-resources:
#17 29.76
#17 29.76 compile:
#17 30.00 [resolver:resolve] Resolving artifacts
#17 30.01
#17 30.01 tests.jar:
#17 30.01 [resolver:install] Using default POM (ome:test-suite:9.0.0-SNAPSHOT)
#17 30.02 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.pom
#17 30.02 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.jar
#17 30.02 [resolver:install] Installing ome:test-suite:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 30.02 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 30.02
#17 30.02 jars:
#17 30.02
#17 30.02 tools:
#17 30.02 [echo] ----------=========== bioformats_package ===========----------
#17 30.10 [echo] isSnapshot = true
#17 30.24
#17 30.24 init-timestamp:
#17 30.24
#17 30.24 bundle:
#17 30.48 [resolver:resolve] Resolving artifacts
#17 30.49 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.51 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.3.0/ome-common-6.3.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.54 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.56 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.56 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.62 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.64 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.69 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.70 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.91 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.96 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.97 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.03 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.04 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.05 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.05 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.21 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.68 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.68 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.68 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.69 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.77 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.77 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.78 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.6.0/ome-xml-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.83 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.6.0/specification-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.89 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.90 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.2.0/ome-codecs-1.2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.92 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5/ome-jai-0.1.5.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.05 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/2.0.3/aircompressor-2.0.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.08 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.15 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.18 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.19 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.28 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.30 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.73 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.75 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.78 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.88 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.89 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.91 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.92 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.14 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.21 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.27 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.37 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.4.0/ome-mdbtools-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.39 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.4.0/metakit-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.39 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.4.0/ome-poi-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.51 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.52 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.10.0/cdm-core-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.00 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.10.0/httpservices-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.01 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.14/httpclient-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.12 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.17 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.14/httpmime-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.18 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-math3/3.6.1/commons-math3-3.6.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.49 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.8/re2j-1.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.50 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.84 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.86 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.87 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.18/slf4j-api-2.0.18.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.88 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.88 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.91 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.29 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.5.37/logback-core-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.40 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.5.37/logback-classic-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.78 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 42.84 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 43.46 [resolver:install] Using default POM (ome:bioformats_package:9.0.0-SNAPSHOT)
#17 43.46 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/bioformats_package-9.0.0-SNAPSHOT.pom
#17 43.46 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/bioformats_package-9.0.0-SNAPSHOT.jar
#17 43.50 [resolver:install] Installing ome:bioformats_package:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 43.50 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 43.51
#17 43.51 BUILD SUCCESSFUL
#17 43.51 Total time: 43 seconds
#17 DONE 43.6s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.0s
#19 exporting to image
#19 exporting layers
#19 exporting layers 3.4s done
#19 writing image sha256:521f5e6b3b218bad6bf6b071c4a76497d2790802176616c054de5d9832ebec15 done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 3.4s
Finished: SUCCESS
