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#15 447.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/core5/httpcore5/5.2.4/httpcore5-5.2.4.jar
#15 447.6 Progress (4): 2.0/3.0 MB | 0.5/1.6 MB | 380/578 kB | 49/862 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-core/2.16.1/jackson-core-2.16.1.jar (578 kB at 3.1 MB/s)
#15 447.6 Progress (4): 2.9/3.0 MB | 1.4/1.6 MB | 862 kB | 343/855 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/core5/httpcore5-h2/5.2.4/httpcore5-h2-5.2.4.jar
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#15 458.8 [[1;34mINFO[m] -------------------------------------------------------
#15 458.8 [[1;34mINFO[m] T E S T S
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#15 459.6 [[1;34mINFO[m]
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#15 459.6 [[1;34mINFO[m]
#15 459.6 [[1;34mINFO[m]
#15 459.6 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mtest-suite[0;1m ---[m
#15 459.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/test-suite/target/test-suite-8.5.0-SNAPSHOT-sources.jar
#15 459.6 [[1;34mINFO[m]
#15 459.6 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mtest-suite[0;1m ---[m
#15 459.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/test-suite/target/test-suite-8.5.0-SNAPSHOT-tests.jar
#15 459.6 [[1;34mINFO[m]
#15 459.6 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mtest-suite[0;1m ---[m
#15 459.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/test-suite/target/test-suite-8.5.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.jar
#15 459.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.pom
#15 459.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/test-suite/target/test-suite-8.5.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT-sources.jar
#15 459.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/test-suite/target/test-suite-8.5.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT-tests.jar
#15 459.7 [[1;34mINFO[m]
#15 459.7 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats-examples[0;1m >----------------------[m
#15 459.7 [[1;34mINFO[m] [1mBuilding Bio-Formats examples 8.5.0-SNAPSHOT [21/24][m
#15 459.7 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#15 459.7 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/mojo/exec-maven-plugin/1.2.1/exec-maven-plugin-1.2.1.pom
#15 459.7 Progress (1): 4.1 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/mojo/exec-maven-plugin/1.2.1/exec-maven-plugin-1.2.1.pom (7.7 kB at 118 kB/s)
#15 459.7 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/mojo/mojo-parent/28/mojo-parent-28.pom
#15 459.8 Progress (1): 4.1 kB
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#15 459.8 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/mojo/exec-maven-plugin/1.2.1/exec-maven-plugin-1.2.1.jar
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#15 459.9 [[1;34mINFO[m]
#15 459.9 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats-examples[0;1m ---[m
#15 459.9 [[1;34mINFO[m]
#15 459.9 [[1;34mINFO[m] [1m--- [0;32mbuild-helper-maven-plugin:3.0.0:parse-version[m [1m(parse-version)[m @ [36mbio-formats-examples[0;1m ---[m
#15 459.9 [[1;34mINFO[m]
#15 459.9 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-examples[0;1m ---[m
#15 459.9 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#15 459.9 [[1;34mINFO[m] Copying 1 resource
#15 459.9 [[1;34mINFO[m] Copying 5 resources
#15 459.9 [[1;34mINFO[m]
#15 459.9 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.14.0:compile[m [1m(default-compile)[m @ [36mbio-formats-examples[0;1m ---[m
#15 459.9 [[1;34mINFO[m] Recompiling the module because of [1mchanged dependency[m.
#15 459.9 [[1;34mINFO[m] Compiling 13 source files with javac [debug release 8] to target/classes
#15 460.0 [[1;33mWARNING[m] source value 8 is obsolete and will be removed in a future release
#15 460.0 [[1;33mWARNING[m] target value 8 is obsolete and will be removed in a future release
#15 460.0 [[1;33mWARNING[m] To suppress warnings about obsolete options, use -Xlint:-options.
#15 460.0 [[1;34mINFO[m]
#15 460.0 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-form
#15 460.0 [output clipped, log limit 2MiB reached]
#15 492.9 WARNING: A restricted method in java.lang.System has been called
#15 492.9 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 492.9 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 492.9 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 492.9
#15 539.0 SLF4J: No SLF4J providers were found.
#15 539.0 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 539.0 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 539.2 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 539.2 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 539.2 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 539.2 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 546.5s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.0s
#17 [13/14] RUN ant jars tools
#17 0.262 Buildfile: /bio-formats-build/bioformats/build.xml
#17 0.643 [echo] isSnapshot = true
#17 2.754
#17 2.754 copy-jars:
#17 2.754
#17 2.754 deps-formats-api:
#17 2.839 [echo] isSnapshot = true
#17 2.895
#17 2.895 install-pom:
#17 3.082 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/pom-bio-formats-8.5.0-SNAPSHOT.pom
#17 3.151 [resolver:install] Installing ome:pom-bio-formats:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 3.155 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 3.157
#17 3.157 jar-formats-api:
#17 3.268 [echo] isSnapshot = true
#17 3.430
#17 3.430 init-title:
#17 3.431 [echo] ----------=========== formats-api ===========----------
#17 3.431
#17 3.431 init-timestamp:
#17 3.440
#17 3.440 init:
#17 3.440
#17 3.440 copy-resources:
#17 3.441 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.456 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.457
#17 3.457 compile:
#17 3.640 [resolver:resolve] Resolving artifacts
#17 3.667 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.879 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 3.879 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 3.879 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 3.879 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 3.879 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 3.879 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 4.580 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 4.580 [javac] import loci.common.ReflectedUniverse;
#17 4.580 [javac] ^
#17 4.780 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 4.780 [javac] int currentIndex = r.getCoreIndex();
#17 4.780 [javac] ^
#17 4.780 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.780 [javac] r.setCoreIndex(coreIndex);
#17 4.780 [javac] ^
#17 4.780 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.780 [javac] r.setCoreIndex(currentIndex);
#17 4.780 [javac] ^
#17 4.981 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.981 [javac] public void setCoreIndex(int no) {
#17 4.981 [javac] ^
#17 4.981 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 4.981 [javac] public int getCoreIndex() {
#17 4.981 [javac] ^
#17 4.981 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 4.981 [javac] public int coreIndexToSeries(int index)
#17 4.981 [javac] ^
#17 4.981 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 4.982 [javac] public int seriesToCoreIndex(int series)
#17 4.982 [javac] ^
#17 4.982 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 4.982 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 4.982 [javac] ^
#17 4.982 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.982 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 4.982 [javac] ^
#17 4.982 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.982 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 4.982 [javac] ^
#17 4.982 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 4.982 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 4.982 [javac] ^
#17 4.983 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 4.983 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 4.983 [javac] ^
#17 5.083 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 5.083 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 5.083 [javac] ^
#17 5.184 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 5.184 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 5.184 [javac] ^
#17 5.184 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 5.184 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 5.184 [javac] ^
#17 5.184 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.184 [javac] public void setCoreIndex(int no) {
#17 5.184 [javac] ^
#17 5.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.185 [javac] public int getCoreIndex() {
#17 5.185 [javac] ^
#17 5.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.185 [javac] public int coreIndexToSeries(int index) {
#17 5.185 [javac] ^
#17 5.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.185 [javac] public int seriesToCoreIndex(int series) {
#17 5.185 [javac] ^
#17 5.185 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.185 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.185 [javac] ^
#17 5.285 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.285 [javac] return getReader().getCoreMetadataList();
#17 5.285 [javac] ^
#17 5.286 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.286 [javac] return getReader().getCoreIndex();
#17 5.286 [javac] ^
#17 5.286 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.286 [javac] getReader().setCoreIndex(no);
#17 5.286 [javac] ^
#17 5.286 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.286 [javac] return getReader().seriesToCoreIndex(series);
#17 5.286 [javac] ^
#17 5.286 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.286 [javac] return getReader().coreIndexToSeries(index);
#17 5.286 [javac] ^
#17 5.286 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.286 [javac] public void setCoreIndex(int no) {
#17 5.286 [javac] ^
#17 5.286 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.286 [javac] public int getCoreIndex() {
#17 5.286 [javac] ^
#17 5.286 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.286 [javac] public int coreIndexToSeries(int index) {
#17 5.286 [javac] ^
#17 5.286 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.287 [javac] public int seriesToCoreIndex(int series) {
#17 5.287 [javac] ^
#17 5.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.287 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.287 [javac] ^
#17 5.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.287 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 5.287 [javac] ^
#17 5.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.287 [javac] return reader.getCoreIndex();
#17 5.287 [javac] ^
#17 5.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.287 [javac] reader.setCoreIndex(no);
#17 5.287 [javac] ^
#17 5.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.287 [javac] return reader.seriesToCoreIndex(series);
#17 5.287 [javac] ^
#17 5.287 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.287 [javac] return reader.coreIndexToSeries(index);
#17 5.287 [javac] ^
#17 5.488 [javac] Note: Some input files use unchecked or unsafe operations.
#17 5.488 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 5.488 [javac] 40 warnings
#17 5.504
#17 5.504 formats-api.jar:
#17 5.504 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 5.531 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 5.564 [resolver:install] Using default POM (ome:formats-api:8.5.0-SNAPSHOT)
#17 5.567 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.pom
#17 5.646 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.jar
#17 5.647 [resolver:install] Installing ome:formats-api:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 5.650 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 5.650
#17 5.650 deps-turbojpeg:
#17 5.650
#17 5.650 jar-turbojpeg:
#17 5.749 [echo] isSnapshot = true
#17 5.889
#17 5.889 init-title:
#17 5.889 [echo] ----------=========== turbojpeg ===========----------
#17 5.889
#17 5.889 init-timestamp:
#17 5.890
#17 5.890 init:
#17 5.890
#17 5.890 copy-resources:
#17 5.890 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 5.891
#17 5.891 compile:
#17 5.900 [resolver:resolve] Resolving artifacts
#17 5.903 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 6.106 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 6.106 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 6.106 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 6.106 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 6.106 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 6.106 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 6.866 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.866 [javac] protected void finalize() throws Throwable {
#17 6.866 [javac] ^
#17 6.866 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.866 [javac] super.finalize();
#17 6.866 [javac] ^
#17 6.866 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.866 [javac] protected void finalize() throws Throwable {
#17 6.866 [javac] ^
#17 6.866 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.866 [javac] super.finalize();
#17 6.866 [javac] ^
#17 6.866 [javac] 8 warnings
#17 6.867
#17 6.867 jar:
#17 6.870 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 7.056 [resolver:install] Using default POM (ome:turbojpeg:8.5.0-SNAPSHOT)
#17 7.064 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.pom
#17 7.066 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.jar
#17 7.068 [resolver:install] Installing ome:turbojpeg:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 7.071 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 7.072
#17 7.072 deps-formats-bsd:
#17 7.072
#17 7.072 jar-formats-bsd:
#17 7.196 [echo] isSnapshot = true
#17 7.338
#17 7.338 init-title:
#17 7.339 [echo] ----------=========== formats-bsd ===========----------
#17 7.339
#17 7.339 init-timestamp:
#17 7.339
#17 7.339 init:
#17 7.339
#17 7.339 copy-resources:
#17 7.339 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.342 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.343
#17 7.343 compile:
#17 7.570 [resolver:resolve] Resolving artifacts
#17 7.595 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.803 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 7.803 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 7.803 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 7.803 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 7.803 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 7.803 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 9.005 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.005 [javac] import loci.common.ReflectedUniverse;
#17 9.005 [javac] ^
#17 9.405 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.405 [javac] core.size() != reader.getCoreMetadataList().size())
#17 9.405 [javac] ^
#17 9.405 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.405 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 9.405 [javac] ^
#17 9.505 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.505 [javac] int n = reader.getCoreMetadataList().size();
#17 9.505 [javac] ^
#17 9.505 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 9.506 [javac] reader.setCoreIndex(coreIndex);
#17 9.506 [javac] ^
#17 9.506 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.506 [javac] int n = reader.getCoreMetadataList().size();
#17 9.506 [javac] ^
#17 9.506 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.506 [javac] int n = reader.getCoreMetadataList().size();
#17 9.506 [javac] ^
#17 9.506 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 9.506 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 9.506 [javac] ^
#17 9.506 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.506 [javac] int n = reader.getCoreMetadataList().size();
#17 9.506 [javac] ^
#17 9.506 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 9.506 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 9.506 [javac] ^
#17 9.506 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.506 [javac] int n = reader.getCoreMetadataList().size();
#17 9.506 [javac] ^
#17 9.506 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 9.506 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 9.506 [javac] ^
#17 9.506 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 9.506 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 9.506 [javac] ^
#17 9.506 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 9.506 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 9.506 [javac] ^
#17 9.506 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.506 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 9.506 [javac] ^
#17 9.506 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.506 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 9.506 [javac] ^
#17 9.506 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.506 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 9.506 [javac] ^
#17 9.507 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.507 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 9.507 [javac] ^
#17 9.507 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.507 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 9.507 [javac] ^
#17 9.507 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.507 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 9.507 [javac] ^
#17 9.607 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.607 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 9.607 [javac] ^
#17 9.607 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 9.607 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 9.607 [javac] ^
#17 9.708 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 9.708 [javac] URL url = new URL(urlPath);
#17 9.708 [javac] ^
#17 9.808 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 9.808 [javac] BitWriter out = new BitWriter();
#17 9.808 [javac] ^
#17 9.808 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 9.808 [javac] BitWriter out = new BitWriter();
#17 9.808 [javac] ^
#17 9.908 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 9.908 [javac] return new Double(v);
#17 9.908 [javac] ^
#17 10.41 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 10.41 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 10.41 [javac] ^
#17 10.41 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 10.41 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 10.41 [javac] ^
#17 10.41 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 10.41 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 10.41 [javac] ^
#17 10.61 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 10.61 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 10.61 [javac] ^
#17 10.71 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.71 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 10.71 [javac] ^
#17 10.81 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 10.81 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 10.81 [javac] ^
#17 10.91 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 10.91 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 10.91 [javac] ^
#17 10.91 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.91 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 10.91 [javac] ^
#17 10.91 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 10.91 [javac] protected ReflectedUniverse r;
#17 10.91 [javac] ^
#17 10.91 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 10.91 [javac] r = new ReflectedUniverse();
#17 10.91 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#17 11.01 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 11.01 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#17 11.01 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 11.01 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#17 11.01 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 11.01 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 11.01 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 11.01 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1111: warning: [deprecation] MM in UNITS has been deprecated
#17 11.01 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 11.01 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1115: warning: [deprecation] MM in UNITS has been deprecated
#17 11.01 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 11.01 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1121: warning: [deprecation] MM in UNITS has been deprecated
#17 11.01 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 11.01 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1169: warning: [deprecation] MM in UNITS has been deprecated
#17 11.01 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 11.01 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1174: warning: [deprecation] MM in UNITS has been deprecated
#17 11.01 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 11.01 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 11.01 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 11.01 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 11.01 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 11.01 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 11.01 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 11.01 [javac] ^
#17 11.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 11.01 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 11.01 [javac] ^
#17 11.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 11.11 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 11.11 [javac] ^
#17 11.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:324: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 11.11 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 11.11 [javac] ^
#17 11.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:346: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 11.11 [javac] result[i] = new Double(readNumber().doubleValue());
#17 11.11 [javac] ^
#17 11.17 [javac] Note: Some input files use unchecked or unsafe operations.
#17 11.17 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 11.17 [javac] 56 warnings
#17 11.17
#17 11.17 formats-bsd.jar:
#17 11.18 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 11.30 [resolver:install] Using default POM (ome:formats-bsd:8.5.0-SNAPSHOT)
#17 11.31 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.pom
#17 11.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.jar
#17 11.31 [resolver:install] Installing ome:formats-bsd:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 11.31 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 11.31
#17 11.31 deps-formats-gpl:
#17 11.31
#17 11.31 jar-formats-gpl:
#17 11.41 [echo] isSnapshot = true
#17 11.54
#17 11.54 init-title:
#17 11.54 [echo] ----------=========== formats-gpl ===========----------
#17 11.54
#17 11.54 init-timestamp:
#17 11.54
#17 11.54 init:
#17 11.54
#17 11.54 copy-resources:
#17 11.54 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 11.54 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 11.54
#17 11.54 compile:
#17 11.90 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 12.67 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 13.05 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#17 13.05 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 13.23 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 13.35 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#17 13.42 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 13.66 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 13.78 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#17 13.82 [resolver:resolve] Resolving artifacts
#17 13.83 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 13.83 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 14.07 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 14.07 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 14.42 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#17 14.42 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#17 14.44 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 14.64 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 14.64 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 14.64 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 14.64 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 14.64 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 14.75 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 15.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.95 [javac] import loci.formats.codec.BitWriter;
#17 15.95 [javac] ^
#17 15.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.95 [javac] import loci.formats.codec.BitWriter;
#17 15.95 [javac] ^
#17 17.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 17.95 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 17.95 [javac] ^
#17 17.95 [javac] cast to Object for a varargs call
#17 17.95 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 18.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 18.05 [javac] BitWriter bits = null;
#17 18.05 [javac] ^
#17 18.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 18.05 [javac] bits = new BitWriter(planes[index].length / 8);
#17 18.05 [javac] ^
#17 18.45 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 18.45 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 18.45 [javac] ^
#17 18.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 18.85 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 18.85 [javac] ^
#17 18.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 18.85 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 18.85 [javac] ^
#17 18.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 18.85 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 18.85 [javac] ^
#17 18.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 18.85 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 18.85 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:173: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 19.12 [javac] Variable variable = group.findVariable(variableName);
#17 19.12 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 19.12 [javac] Variable variable = group.findVariable(variableName);
#17 19.12 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:203: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 19.12 [javac] List<Attribute> attributes = variable.getAttributes();
#17 19.12 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:245: warning: [deprecation] getName() in CDMNode has been deprecated
#17 19.12 [javac] String groupName = group.getName();
#17 19.12 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getAttributes() in Group has been deprecated
#17 19.12 [javac] List<Attribute> attributes = group.getAttributes();
#17 19.12 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:254: warning: [deprecation] getName() in CDMNode has been deprecated
#17 19.12 [javac] String variableName = variable.getName();
#17 19.12 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:277: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 19.12 [javac] Group nextParent = parent.findGroup(token);
#17 19.12 [javac] ^
#17 19.12 [javac] Note: Some input files use unchecked or unsafe operations.
#17 19.12 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 19.12 [javac] 21 warnings
#17 19.12
#17 19.12 formats-gpl.jar:
#17 19.13 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 19.28 [resolver:install] Using default POM (ome:formats-gpl:8.5.0-SNAPSHOT)
#17 19.28 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.pom
#17 19.34 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.jar
#17 19.34 [resolver:install] Installing ome:formats-gpl:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 19.35 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 19.35
#17 19.35 deps-bio-formats-plugins:
#17 19.35
#17 19.35 jar-bio-formats-plugins:
#17 19.44 [echo] isSnapshot = true
#17 19.60
#17 19.60 init-title:
#17 19.60 [echo] ----------=========== bio-formats_plugins ===========----------
#17 19.60
#17 19.60 init-timestamp:
#17 19.60
#17 19.60 init:
#17 19.60
#17 19.60 copy-resources:
#17 19.60 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 19.60 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 19.60
#17 19.60 compile:
#17 19.87 [resolver:resolve] Resolving artifacts
#17 19.89 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 20.20 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 20.20 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 20.20 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 20.20 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 20.20 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 20.20 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 21.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.00 [javac] import loci.common.ReflectedUniverse;
#17 21.00 [javac] ^
#17 21.00 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.00 [javac] import loci.common.ReflectedUniverse;
#17 21.00 [javac] ^
#17 21.40 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 21.40 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 21.40 [javac] ^
#17 21.50 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 21.50 [javac] URL url = new URL(urlPath);
#17 21.50 [javac] ^
#17 21.60 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.60 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 21.60 [javac] ^
#17 21.60 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.60 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 21.60 [javac] ^
#17 21.70 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.70 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 21.70 [javac] ^
#17 21.70 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.70 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 21.70 [javac] ^
#17 21.90 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 21.90 [javac] url = new URL(path);
#17 21.90 [javac] ^
#17 22.08 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 22.08 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 22.08 [javac] 13 warnings
#17 22.08
#17 22.08 bio-formats-plugins.jar:
#17 22.09 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 22.12 [resolver:install] Using default POM (ome:bio-formats_plugins:8.5.0-SNAPSHOT)
#17 22.12 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.pom
#17 22.17 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.jar
#17 22.17 [resolver:install] Installing ome:bio-formats_plugins:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 22.17 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 22.17
#17 22.17 deps-bio-formats-tools:
#17 22.17
#17 22.17 jar-bio-formats-tools:
#17 22.27 [echo] isSnapshot = true
#17 22.41
#17 22.41 init-title:
#17 22.41 [echo] ----------=========== bio-formats-tools ===========----------
#17 22.41
#17 22.41 init-timestamp:
#17 22.41
#17 22.41 init:
#17 22.41
#17 22.41 copy-resources:
#17 22.41 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 22.41
#17 22.41 compile:
#17 22.67 [resolver:resolve] Resolving artifacts
#17 22.68 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 22.88 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 22.88 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 22.88 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 22.88 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 22.88 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 22.88 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 24.08 [javac] 4 warnings
#17 24.09
#17 24.09 bio-formats-tools.jar:
#17 24.09 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 24.10 [resolver:install] Using default POM (ome:bio-formats-tools:8.5.0-SNAPSHOT)
#17 24.10 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.pom
#17 24.10 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.jar
#17 24.11 [resolver:install] Installing ome:bio-formats-tools:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 24.11 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 24.11
#17 24.11 deps-tests:
#17 24.11
#17 24.11 jar-tests:
#17 24.20 [echo] isSnapshot = true
#17 24.33
#17 24.33 init-title:
#17 24.33 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 24.33
#17 24.33 init-timestamp:
#17 24.33
#17 24.33 init:
#17 24.33
#17 24.33 copy-resources:
#17 24.33 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 24.33
#17 24.33 compile:
#17 24.64 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.73 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 25.08 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 25.10 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 25.65 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 26.10 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 26.12 [resolver:resolve] Resolving artifacts
#17 26.13 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 26.20 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 26.54 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 26.55 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 27.09 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 27.45 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 27.45 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 27.66 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 27.66 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 27.66 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 27.66 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 27.66 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 27.66 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 28.76 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 28.76 [javac] int index = unflattenedReader.getCoreIndex();
#17 28.76 [javac] ^
#17 28.76 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 28.76 [javac] reader.setCoreIndex(index);
#17 28.76 [javac] ^
#17 28.96 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 28.96 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 28.96 [javac] ^
#17 28.96 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 28.96 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 28.96 [javac] ^
#17 29.23 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 29.23 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 29.23 [javac] ^
#17 29.23 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 29.23 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 29.23 [javac] ^
#17 29.23 [javac] Note: Some input files use unchecked or unsafe operations.
#17 29.23 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 29.23 [javac] 10 warnings
#17 29.23
#17 29.23 tests.jar:
#17 29.24 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 29.25 [resolver:install] Using default POM (ome:test-suite:8.5.0-SNAPSHOT)
#17 29.26 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.pom
#17 29.27 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.jar
#17 29.27 [resolver:install] Installing ome:test-suite:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 29.27 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 29.27
#17 29.27 jars:
#17 29.27
#17 29.27 copy-jars:
#17 29.27
#17 29.27 deps-formats-api:
#17 29.32 [echo] isSnapshot = true
#17 29.36
#17 29.36 install-pom:
#17 29.50 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/pom-bio-formats-8.5.0-SNAPSHOT.pom
#17 29.50 [resolver:install] Installing ome:pom-bio-formats:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 29.50 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 29.50
#17 29.50 jar-formats-api:
#17 29.59 [echo] isSnapshot = true
#17 29.72
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#17 29.72 [echo] ----------=========== formats-api ===========----------
#17 29.72
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#17 29.88 [resolver:resolve] Resolving artifacts
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#17 29.89 formats-api.jar:
#17 29.91 [resolver:install] Using default POM (ome:formats-api:8.5.0-SNAPSHOT)
#17 29.91 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.pom
#17 29.91 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.jar
#17 29.91 [resolver:install] Installing ome:formats-api:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 29.91 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 29.91
#17 29.91 deps-turbojpeg:
#17 29.91
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#17 30.13 [echo] ----------=========== turbojpeg ===========----------
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#17 30.15 [resolver:install] Using default POM (ome:turbojpeg:8.5.0-SNAPSHOT)
#17 30.15 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.pom
#17 30.16 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.jar
#17 30.16 [resolver:install] Installing ome:turbojpeg:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 30.16 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 30.16
#17 30.16 deps-formats-bsd:
#17 30.16
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#17 30.37 [echo] ----------=========== formats-bsd ===========----------
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#17 30.59 formats-bsd.jar:
#17 30.62 [resolver:install] Using default POM (ome:formats-bsd:8.5.0-SNAPSHOT)
#17 30.63 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.pom
#17 30.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.jar
#17 30.63 [resolver:install] Installing ome:formats-bsd:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 30.63 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 30.63
#17 30.63 deps-formats-gpl:
#17 30.63
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#17 30.84
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#17 30.84 [echo] ----------=========== formats-gpl ===========----------
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#17 31.10 formats-gpl.jar:
#17 31.14 [resolver:install] Using default POM (ome:formats-gpl:8.5.0-SNAPSHOT)
#17 31.14 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.pom
#17 31.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.jar
#17 31.14 [resolver:install] Installing ome:formats-gpl:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 31.14 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 31.14
#17 31.14 deps-bio-formats-plugins:
#17 31.14
#17 31.14 jar-bio-formats-plugins:
#17 31.23 [echo] isSnapshot = true
#17 31.35
#17 31.35 init-title:
#17 31.35 [echo] ----------=========== bio-formats_plugins ===========----------
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#17 31.58 [resolver:resolve] Resolving artifacts
#17 31.59
#17 31.59 bio-formats-plugins.jar:
#17 31.60 [resolver:install] Using default POM (ome:bio-formats_plugins:8.5.0-SNAPSHOT)
#17 31.61 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.pom
#17 31.61 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.jar
#17 31.61 [resolver:install] Installing ome:bio-formats_plugins:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 31.61 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 31.61
#17 31.61 deps-bio-formats-tools:
#17 31.61
#17 31.61 jar-bio-formats-tools:
#17 31.69 [echo] isSnapshot = true
#17 31.82
#17 31.82 init-title:
#17 31.82 [echo] ----------=========== bio-formats-tools ===========----------
#17 31.82
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#17 31.82
#17 31.82 compile:
#17 32.04 [resolver:resolve] Resolving artifacts
#17 32.05
#17 32.05 bio-formats-tools.jar:
#17 32.05 [resolver:install] Using default POM (ome:bio-formats-tools:8.5.0-SNAPSHOT)
#17 32.06 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.pom
#17 32.06 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.jar
#17 32.06 [resolver:install] Installing ome:bio-formats-tools:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 32.06 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 32.06
#17 32.06 deps-tests:
#17 32.06
#17 32.06 jar-tests:
#17 32.14 [echo] isSnapshot = true
#17 32.27
#17 32.27 init-title:
#17 32.27 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 32.27
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#17 32.27
#17 32.27 init:
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#17 32.27
#17 32.27 compile:
#17 32.51 [resolver:resolve] Resolving artifacts
#17 32.52
#17 32.52 tests.jar:
#17 32.53 [resolver:install] Using default POM (ome:test-suite:8.5.0-SNAPSHOT)
#17 32.53 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.pom
#17 32.53 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.jar
#17 32.54 [resolver:install] Installing ome:test-suite:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 32.54 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 32.54
#17 32.54 jars:
#17 32.54
#17 32.54 tools:
#17 32.54 [echo] ----------=========== bioformats_package ===========----------
#17 32.71 [echo] isSnapshot = true
#17 32.83
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#17 32.83
#17 32.83 bundle:
#17 33.07 [resolver:resolve] Resolving artifacts
#17 33.08 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.11 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.2.1-SNAPSHOT/ome-common-6.2.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.13 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.16 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.16 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.22 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.23 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.28 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 33.49 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 33.63 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 34.31 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.4-SNAPSHOT/ome-xml-6.5.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 34.42 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 34.44 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.57 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.64 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 35.25 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 35.35 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.37 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 35.64 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.70 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.79 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 35.80 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.92 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.92 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.35 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.36 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.46 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.51 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.52 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.53 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.58 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.61 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.94 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.95 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.96 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.97 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.98 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.00 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.35 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.16/logback-core-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.45 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.16/logback-classic-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.84 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 44.55 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 45.12 [resolver:install] Using default POM (ome:bioformats_package:8.5.0-SNAPSHOT)
#17 45.12 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/bioformats_package-8.5.0-SNAPSHOT.pom
#17 45.13 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/bioformats_package-8.5.0-SNAPSHOT.jar
#17 45.16 [resolver:install] Installing ome:bioformats_package:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 45.17 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 45.17
#17 45.17 BUILD SUCCESSFUL
#17 45.17 Total time: 44 seconds
#17 DONE 45.6s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.2s
#19 exporting to image
#19 exporting layers
#19 exporting layers 3.4s done
#19 writing image sha256:98903c4c79f485f9b28fc6cd4954ed3f3e9d65bd496468e2608cc43ad552fa2d done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 3.4s
Finished: SUCCESS
