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#15 441.9 Progress (4): 509 kB | 373 kB | 86 kB | 175/193 kB
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#15 441.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-sink-api/2.1.0/doxia-sink-api-2.1.0.jar
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#15 441.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-core/2.1.0/doxia-core-2.1.0.jar
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#15 441.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-site-model/2.1.0/doxia-site-model-2.1.0.jar
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#15 442.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-skin-model/2.1.0/doxia-skin-model-2.1.0.jar
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#15 442.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xhtml5/2.1.0/doxia-module-xhtml5-2.1.0.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-skin-model/2.1.0/doxia-skin-model-2.1.0.jar (19 kB at 36 kB/s)
#15 442.0 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-velocity/2.3.0/plexus-velocity-2.3.0.jar
#15 442.0 Progress (4): 1.1/1.4 MB | 183 kB | 92 kB | 17 kB
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#15 442.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/velocity/velocity-engine-core/2.4.1/velocity-engine-core-2.4.1.jar
#15 442.1 Progress (3): 1.3/1.4 MB | 183 kB | 92 kB
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#15 442.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.20.0/commons-lang3-3.20.0.jar
#15 442.1 Progress (2): 1.4/1.4 MB | 92 kB
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#15 442.1 Progress (1): 1.4 MB
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#15 447.6 [output clipped, log limit 2MiB reached]
#15 497.8 WARNING: A restricted method in java.lang.System has been called
#15 497.8 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 497.8 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 497.8 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 497.8
#15 548.3 SLF4J: No SLF4J providers were found.
#15 548.3 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 548.3 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 548.7 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 548.7 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 548.7 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 548.7 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 558.2s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.3s
#17 [13/14] RUN ant jars tools
#17 0.607 Buildfile: /bio-formats-build/bioformats/build.xml
#17 1.161 [echo] isSnapshot = true
#17 1.304
#17 1.304 copy-jars:
#17 1.304
#17 1.304 deps-formats-api:
#17 1.454 [echo] isSnapshot = true
#17 1.557
#17 1.557 install-pom:
#17 1.790 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/pom-bio-formats-9.0.0-SNAPSHOT.pom
#17 1.808 [resolver:install] Installing ome:pom-bio-formats:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 1.816 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 1.824
#17 1.824 jar-formats-api:
#17 2.019 [echo] isSnapshot = true
#17 2.221
#17 2.221 init-title:
#17 2.222 [echo] ----------=========== formats-api ===========----------
#17 2.222
#17 2.222 init-timestamp:
#17 2.250
#17 2.250 init:
#17 2.250
#17 2.250 copy-resources:
#17 2.253 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 2.293 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 2.298
#17 2.298 compile:
#17 2.769 [resolver:resolve] Resolving artifacts
#17 2.818 [javac] Compiling 59 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.153 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 3.153 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 3.153 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 4.463 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 4.463 [javac] int currentIndex = r.getCoreIndex();
#17 4.463 [javac] ^
#17 4.463 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.463 [javac] r.setCoreIndex(coreIndex);
#17 4.463 [javac] ^
#17 4.463 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.463 [javac] r.setCoreIndex(currentIndex);
#17 4.463 [javac] ^
#17 4.664 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.665 [javac] public void setCoreIndex(int no) {
#17 4.665 [javac] ^
#17 4.666 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 4.666 [javac] public int getCoreIndex() {
#17 4.666 [javac] ^
#17 4.666 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 4.666 [javac] public int coreIndexToSeries(int index)
#17 4.666 [javac] ^
#17 4.666 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 4.666 [javac] public int seriesToCoreIndex(int series)
#17 4.666 [javac] ^
#17 4.666 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 4.666 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 4.666 [javac] ^
#17 4.666 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.666 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 4.666 [javac] ^
#17 4.666 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.666 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 4.666 [javac] ^
#17 4.666 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 4.666 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 4.666 [javac] ^
#17 4.666 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 4.666 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 4.666 [javac] ^
#17 4.767 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 4.767 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 4.768 [javac] ^
#17 4.869 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 4.869 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 4.869 [javac] ^
#17 4.869 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 4.869 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 4.869 [javac] ^
#17 4.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:791: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.972 [javac] public void setCoreIndex(int no) {
#17 4.972 [javac] ^
#17 4.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 4.972 [javac] public int getCoreIndex() {
#17 4.972 [javac] ^
#17 4.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:801: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 4.972 [javac] public int coreIndexToSeries(int index) {
#17 4.972 [javac] ^
#17 4.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:796: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 4.972 [javac] public int seriesToCoreIndex(int series) {
#17 4.972 [javac] ^
#17 4.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:605: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 4.972 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 4.972 [javac] ^
#17 4.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:606: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 4.972 [javac] return getReader().getCoreMetadataList();
#17 4.972 [javac] ^
#17 4.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:786: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 4.972 [javac] return getReader().getCoreIndex();
#17 4.972 [javac] ^
#17 4.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:792: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.972 [javac] getReader().setCoreIndex(no);
#17 4.972 [javac] ^
#17 4.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:797: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 4.972 [javac] return getReader().seriesToCoreIndex(series);
#17 4.972 [javac] ^
#17 4.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:802: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 4.972 [javac] return getReader().coreIndexToSeries(index);
#17 4.972 [javac] ^
#17 5.072 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.072 [javac] public void setCoreIndex(int no) {
#17 5.072 [javac] ^
#17 5.072 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.072 [javac] public int getCoreIndex() {
#17 5.073 [javac] ^
#17 5.073 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.073 [javac] public int coreIndexToSeries(int index) {
#17 5.073 [javac] ^
#17 5.073 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.073 [javac] public int seriesToCoreIndex(int series) {
#17 5.073 [javac] ^
#17 5.073 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.073 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.073 [javac] ^
#17 5.073 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.074 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 5.074 [javac] ^
#17 5.074 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.074 [javac] return reader.getCoreIndex();
#17 5.074 [javac] ^
#17 5.074 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.074 [javac] reader.setCoreIndex(no);
#17 5.074 [javac] ^
#17 5.074 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.074 [javac] return reader.seriesToCoreIndex(series);
#17 5.074 [javac] ^
#17 5.074 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.074 [javac] return reader.coreIndexToSeries(index);
#17 5.074 [javac] ^
#17 5.361 [javac] Note: Some input files use unchecked or unsafe operations.
#17 5.361 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 5.361 [javac] 36 warnings
#17 5.362
#17 5.362 formats-api.jar:
#17 5.362 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 5.393 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 5.432 [resolver:install] Using default POM (ome:formats-api:9.0.0-SNAPSHOT)
#17 5.436 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.pom
#17 5.437 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar
#17 5.439 [resolver:install] Installing ome:formats-api:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 5.446 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 5.447
#17 5.447 deps-turbojpeg:
#17 5.447
#17 5.447 jar-turbojpeg:
#17 5.578 [echo] isSnapshot = true
#17 5.705
#17 5.705 init-title:
#17 5.705 [echo] ----------=========== turbojpeg ===========----------
#17 5.706
#17 5.706 init-timestamp:
#17 5.706
#17 5.706 init:
#17 5.706
#17 5.706 copy-resources:
#17 5.707 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 5.708
#17 5.708 compile:
#17 5.720 [resolver:resolve] Resolving artifacts
#17 5.722 [javac] Compiling 8 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 6.032 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 6.032 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 6.032 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 6.734 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.734 [javac] protected void finalize() throws Throwable {
#17 6.734 [javac] ^
#17 6.734 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.734 [javac] super.finalize();
#17 6.734 [javac] ^
#17 6.734 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.734 [javac] protected void finalize() throws Throwable {
#17 6.734 [javac] ^
#17 6.734 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 6.734 [javac] super.finalize();
#17 6.735 [javac] ^
#17 6.784 [javac] 5 warnings
#17 6.785
#17 6.785 jar:
#17 6.788 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 7.004 [resolver:install] Using default POM (ome:turbojpeg:9.0.0-SNAPSHOT)
#17 7.011 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.pom
#17 7.013 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar
#17 7.015 [resolver:install] Installing ome:turbojpeg:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 7.018 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 7.020
#17 7.020 deps-formats-bsd:
#17 7.020
#17 7.020 jar-formats-bsd:
#17 7.141 [echo] isSnapshot = true
#17 7.302
#17 7.302 init-title:
#17 7.303 [echo] ----------=========== formats-bsd ===========----------
#17 7.303
#17 7.303 init-timestamp:
#17 7.303
#17 7.303 init:
#17 7.303
#17 7.303 copy-resources:
#17 7.304 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.308 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.309
#17 7.309 compile:
#17 7.585 [resolver:resolve] Resolving artifacts
#17 7.608 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.918 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 7.918 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 7.918 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.03 [javac] core.size() != reader.getCoreMetadataList().size())
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.03 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.03 [javac] int n = reader.getCoreMetadataList().size();
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 10.03 [javac] reader.setCoreIndex(coreIndex);
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.03 [javac] int n = reader.getCoreMetadataList().size();
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.03 [javac] int n = reader.getCoreMetadataList().size();
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 10.03 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.03 [javac] int n = reader.getCoreMetadataList().size();
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 10.03 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.03 [javac] int n = reader.getCoreMetadataList().size();
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 10.03 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 10.03 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 10.03 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.03 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.03 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.03 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.03 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.03 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 10.03 [javac] ^
#17 10.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.03 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 10.03 [javac] ^
#17 10.23 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 10.23 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 10.23 [javac] ^
#17 10.23 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:70: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 10.23 [javac] public static final String STABLE_VERSION = "6.6.0";
#17 10.24 [javac] ^
#17 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:101: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 10.24 [javac] public static final String OLD_TOOLS = "loci_tools.jar";
#17 10.24 [javac] ^
#17 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 10.24 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 10.24 [javac] ^
#17 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 10.24 [javac] URL url = new URL(urlPath);
#17 10.24 [javac] ^
#17 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitBuffer.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 10.34 [javac] public class BitBuffer {
#17 10.34 [javac] ^
#17 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitWriter.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 10.34 [javac] public class BitWriter {
#17 10.34 [javac] ^
#17 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 10.34 [javac] BitWriter out = new BitWriter();
#17 10.34 [javac] ^
#17 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 10.34 [javac] BitWriter out = new BitWriter();
#17 10.34 [javac] ^
#17 10.54 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:534: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 10.54 [javac] return new Double(v);
#17 10.54 [javac] ^
#17 11.25 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2214: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 11.25 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 11.25 [javac] ^
#17 11.25 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2221: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 11.25 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 11.25 [javac] ^
#17 11.25 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2228: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 11.25 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 11.25 [javac] ^
#17 11.45 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 11.45 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 11.45 [javac] ^
#17 11.75 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:629: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.75 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 11.75 [javac] ^
#17 11.75 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1387: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 11.75 [javac] public MetadataStore getMetadataStoreForDisplay() {
#17 11.75 [javac] ^
#17 11.75 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1405: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 11.75 [javac] public MetadataStore getMetadataStoreForConversion() {
#17 11.75 [javac] ^
#17 11.85 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 11.85 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 11.85 [javac] ^
#17 11.95 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 11.95 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 11.95 [javac] ^
#17 11.95 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.95 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 11.95 [javac] ^
#17 11.95 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 11.95 [javac] protected ReflectedUniverse r;
#17 11.95 [javac] ^
#17 11.95 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 11.95 [javac] r = new ReflectedUniverse();
#17 11.95 [javac] ^
#17 12.05 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1044: warning: [deprecation] NM in UNITS has been deprecated
#17 12.05 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 12.05 [javac] ^
#17 12.05 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1076: warning: [deprecation] MM in UNITS has been deprecated
#17 12.05 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 12.05 [javac] ^
#17 12.05 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 12.05 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 12.05 [javac] ^
#17 12.05 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1091: warning: [deprecation] MM in UNITS has been deprecated
#17 12.05 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 12.05 [javac] ^
#17 12.05 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#17 12.05 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 12.05 [javac] ^
#17 12.05 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1116: warning: [deprecation] MM in UNITS has been deprecated
#17 12.05 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 12.05 [javac] ^
#17 12.05 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1122: warning: [deprecation] MM in UNITS has been deprecated
#17 12.05 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 12.05 [javac] ^
#17 12.05 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#17 12.05 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 12.05 [javac] ^
#17 12.05 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1175: warning: [deprecation] MM in UNITS has been deprecated
#17 12.05 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 12.05 [javac] ^
#17 12.15 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 12.15 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 12.15 [javac] ^
#17 12.15 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 12.15 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 12.15 [javac] ^
#17 12.15 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 12.15 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 12.15 [javac] ^
#17 12.15 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 12.15 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 12.15 [javac] ^
#17 12.25 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:113: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 12.25 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 12.25 [javac] ^
#17 12.25 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:324: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 12.25 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 12.25 [javac] ^
#17 12.25 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:346: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 12.25 [javac] result[i] = new Double(readNumber().doubleValue());
#17 12.25 [javac] ^
#17 12.25 [javac] Note: Some input files use unchecked or unsafe operations.
#17 12.25 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 12.25 [javac] 58 warnings
#17 12.28
#17 12.28 formats-bsd.jar:
#17 12.28 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 12.41 [resolver:install] Using default POM (ome:formats-bsd:9.0.0-SNAPSHOT)
#17 12.42 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.pom
#17 12.42 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar
#17 12.42 [resolver:install] Installing ome:formats-bsd:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 12.42 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 12.42
#17 12.42 deps-formats-gpl:
#17 12.42
#17 12.42 jar-formats-gpl:
#17 12.53 [echo] isSnapshot = true
#17 12.66
#17 12.66 init-title:
#17 12.66 [echo] ----------=========== formats-gpl ===========----------
#17 12.66
#17 12.66 init-timestamp:
#17 12.66
#17 12.66 init:
#17 12.66
#17 12.66 copy-resources:
#17 12.66 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 12.66 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 12.66
#17 12.66 compile:
#17 12.92 [resolver:resolve] Resolving artifacts
#17 12.93 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 13.26 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 13.26 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 13.26 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 17.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1325: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 17.48 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 17.48 [javac] ^
#17 17.48 [javac] cast to Object for a varargs call
#17 17.48 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 17.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 17.58 [javac] BitWriter bits = null;
#17 17.58 [javac] ^
#17 17.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 17.58 [javac] bits = new BitWriter(planes[index].length / 8);
#17 17.58 [javac] ^
#17 17.98 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 17.98 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 17.98 [javac] ^
#17 18.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:470: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 18.48 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 18.48 [javac] ^
#17 18.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:499: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 18.48 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 18.48 [javac] ^
#17 18.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 18.48 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 18.48 [javac] ^
#17 18.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 18.48 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 18.48 [javac] ^
#17 18.98 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 18.98 [javac] Variable variable = group.findVariable(variableName);
#17 18.98 [javac] ^
#17 18.98 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 18.98 [javac] Variable variable = group.findVariable(variableName);
#17 18.98 [javac] ^
#17 18.98 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 18.98 [javac] List<Attribute> attributes = variable.getAttributes();
#17 18.98 [javac] ^
#17 18.98 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 18.98 [javac] String groupName = group.getName();
#17 18.98 [javac] ^
#17 18.98 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 18.98 [javac] List<Attribute> attributes = group.getAttributes();
#17 18.98 [javac] ^
#17 18.98 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 18.98 [javac] String variableName = variable.getName();
#17 18.98 [javac] ^
#17 18.98 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 18.98 [javac] Group nextParent = parent.findGroup(token);
#17 18.98 [javac] ^
#17 19.03 [javac] Note: Some input files use unchecked or unsafe operations.
#17 19.03 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 19.03 [javac] 16 warnings
#17 19.03
#17 19.03 formats-gpl.jar:
#17 19.04 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 19.19 [resolver:install] Using default POM (ome:formats-gpl:9.0.0-SNAPSHOT)
#17 19.20 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.pom
#17 19.20 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar
#17 19.20 [resolver:install] Installing ome:formats-gpl:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 19.20 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 19.20
#17 19.20 deps-bio-formats-plugins:
#17 19.20
#17 19.20 jar-bio-formats-plugins:
#17 19.29 [echo] isSnapshot = true
#17 19.43
#17 19.43 init-title:
#17 19.43 [echo] ----------=========== bio-formats_plugins ===========----------
#17 19.43
#17 19.43 init-timestamp:
#17 19.43
#17 19.43 init:
#17 19.43
#17 19.43 copy-resources:
#17 19.43 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 19.43 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 19.43
#17 19.43 compile:
#17 19.69 [resolver:resolve] Resolving artifacts
#17 19.70 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 19.91 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 19.91 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 19.91 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 21.42 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 21.42 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 21.42 [javac] ^
#17 21.52 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 21.52 [javac] URL url = new URL(urlPath);
#17 21.52 [javac] ^
#17 21.52 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.52 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 21.52 [javac] ^
#17 21.52 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.52 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 21.52 [javac] ^
#17 21.72 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.72 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 21.72 [javac] ^
#17 21.72 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.72 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 21.72 [javac] ^
#17 21.92 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 21.92 [javac] url = new URL(path);
#17 21.92 [javac] ^
#17 22.18 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 22.18 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 22.18 [javac] 8 warnings
#17 22.18
#17 22.18 bio-formats-plugins.jar:
#17 22.19 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 22.21 [resolver:install] Using default POM (ome:bio-formats_plugins:9.0.0-SNAPSHOT)
#17 22.22 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.pom
#17 22.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar
#17 22.22 [resolver:install] Installing ome:bio-formats_plugins:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 22.22 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 22.22
#17 22.22 deps-bio-formats-tools:
#17 22.22
#17 22.22 jar-bio-formats-tools:
#17 22.30 [echo] isSnapshot = true
#17 22.50
#17 22.50 init-title:
#17 22.50 [echo] ----------=========== bio-formats-tools ===========----------
#17 22.50
#17 22.50 init-timestamp:
#17 22.50
#17 22.50 init:
#17 22.50
#17 22.50 copy-resources:
#17 22.50 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 22.51
#17 22.51 compile:
#17 22.83 [resolver:resolve] Resolving artifacts
#17 22.84 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 23.15 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 23.15 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 23.15 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 24.73 [javac] 1 warning
#17 24.73
#17 24.73 bio-formats-tools.jar:
#17 24.74 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 24.74 [resolver:install] Using default POM (ome:bio-formats-tools:9.0.0-SNAPSHOT)
#17 24.75 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.pom
#17 24.75 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar
#17 24.75 [resolver:install] Installing ome:bio-formats-tools:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 24.75 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 24.75
#17 24.75 deps-tests:
#17 24.75
#17 24.75 jar-tests:
#17 24.84 [echo] isSnapshot = true
#17 24.99
#17 24.99 init-title:
#17 24.99 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 24.99
#17 24.99 init-timestamp:
#17 24.99
#17 24.99 init:
#17 24.99
#17 24.99 copy-resources:
#17 24.99 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 25.00
#17 25.00 compile:
#17 25.55 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 26.03 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 26.41 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 26.45 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 26.73 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 27.14 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 27.17 [resolver:resolve] Resolving artifacts
#17 27.19 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 27.27 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 27.62 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 27.63 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 27.90 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 28.29 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 28.29 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 28.60 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 28.60 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 28.60 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 29.61 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 29.61 [javac] int index = unflattenedReader.getCoreIndex();
#17 29.61 [javac] ^
#17 29.61 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 29.61 [javac] reader.setCoreIndex(index);
#17 29.61 [javac] ^
#17 29.91 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 29.91 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 29.91 [javac] ^
#17 29.91 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 29.91 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 29.91 [javac] ^
#17 30.22 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 30.22 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 30.22 [javac] ^
#17 30.22 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 30.22 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 30.22 [javac] ^
#17 30.25 [javac] Note: Some input files use unchecked or unsafe operations.
#17 30.25 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 30.25 [javac] 7 warnings
#17 30.25
#17 30.25 tests.jar:
#17 30.25 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 30.26 [resolver:install] Using default POM (ome:test-suite:9.0.0-SNAPSHOT)
#17 30.27 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.pom
#17 30.27 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.jar
#17 30.27 [resolver:install] Installing ome:test-suite:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 30.27 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 30.27
#17 30.27 jars:
#17 30.27
#17 30.27 copy-jars:
#17 30.27
#17 30.27 deps-formats-api:
#17 30.33 [echo] isSnapshot = true
#17 30.39
#17 30.39 install-pom:
#17 30.54 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/pom-bio-formats-9.0.0-SNAPSHOT.pom
#17 30.54 [resolver:install] Installing ome:pom-bio-formats:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 30.55 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 30.55
#17 30.55 jar-formats-api:
#17 30.66 [echo] isSnapshot = true
#17 30.87
#17 30.87 init-title:
#17 30.87 [echo] ----------=========== formats-api ===========----------
#17 30.87
#17 30.87 init-timestamp:
#17 30.87
#17 30.87 init:
#17 30.87
#17 30.87 copy-resources:
#17 30.88
#17 30.88 compile:
#17 31.07 [resolver:resolve] Resolving artifacts
#17 31.08
#17 31.08 formats-api.jar:
#17 31.11 [resolver:install] Using default POM (ome:formats-api:9.0.0-SNAPSHOT)
#17 31.12 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.pom
#17 31.12 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar
#17 31.12 [resolver:install] Installing ome:formats-api:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 31.13 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 31.13
#17 31.13 deps-turbojpeg:
#17 31.13
#17 31.13 jar-turbojpeg:
#17 31.23 [echo] isSnapshot = true
#17 31.37
#17 31.37 init-title:
#17 31.39 [echo] ----------=========== turbojpeg ===========----------
#17 31.39
#17 31.39 init-timestamp:
#17 31.39
#17 31.39 init:
#17 31.39
#17 31.39 copy-resources:
#17 31.39
#17 31.39 compile:
#17 31.41 [resolver:resolve] Resolving artifacts
#17 31.41
#17 31.41 jar:
#17 31.42 [resolver:install] Using default POM (ome:turbojpeg:9.0.0-SNAPSHOT)
#17 31.43 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.pom
#17 31.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar
#17 31.43 [resolver:install] Installing ome:turbojpeg:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 31.44 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 31.44
#17 31.44 deps-formats-bsd:
#17 31.44
#17 31.44 jar-formats-bsd:
#17 31.55 [echo] isSnapshot = true
#17 31.70
#17 31.70 init-title:
#17 31.70 [echo] ----------=========== formats-bsd ===========----------
#17 31.70
#17 31.70 init-timestamp:
#17 31.70
#17 31.70 init:
#17 31.70
#17 31.70 copy-resources:
#17 31.71
#17 31.71 compile:
#17 31.98 [resolver:resolve] Resolving artifacts
#17 31.99
#17 31.99 formats-bsd.jar:
#17 32.02 [resolver:install] Using default POM (ome:formats-bsd:9.0.0-SNAPSHOT)
#17 32.02 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.pom
#17 32.02 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar
#17 32.02 [resolver:install] Installing ome:formats-bsd:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 32.02 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 32.02
#17 32.02 deps-formats-gpl:
#17 32.02
#17 32.02 jar-formats-gpl:
#17 32.10 [echo] isSnapshot = true
#17 32.31
#17 32.31 init-title:
#17 32.31 [echo] ----------=========== formats-gpl ===========----------
#17 32.31
#17 32.31 init-timestamp:
#17 32.31
#17 32.31 init:
#17 32.31
#17 32.31 copy-resources:
#17 32.32
#17 32.32 compile:
#17 32.73 [resolver:resolve] Resolving artifacts
#17 32.75
#17 32.75 formats-gpl.jar:
#17 32.79 [resolver:install] Using default POM (ome:formats-gpl:9.0.0-SNAPSHOT)
#17 32.79 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.pom
#17 32.80 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar
#17 32.80 [resolver:install] Installing ome:formats-gpl:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 32.80 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 32.80
#17 32.80 deps-bio-formats-plugins:
#17 32.80
#17 32.80 jar-bio-formats-plugins:
#17 32.89 [echo] isSnapshot = true
#17 33.03
#17 33.03 init-title:
#17 33.03 [echo] ----------=========== bio-formats_plugins ===========----------
#17 33.03
#17 33.03 init-timestamp:
#17 33.03
#17 33.03 init:
#17 33.03
#17 33.03 copy-resources:
#17 33.03
#17 33.03 compile:
#17 33.35 [resolver:resolve] Resolving artifacts
#17 33.36
#17 33.36 bio-formats-plugins.jar:
#17 33.37 [resolver:install] Using default POM (ome:bio-formats_plugins:9.0.0-SNAPSHOT)
#17 33.37 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.pom
#17 33.37 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar
#17 33.37 [resolver:install] Installing ome:bio-formats_plugins:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 33.38 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 33.38
#17 33.38 deps-bio-formats-tools:
#17 33.38
#17 33.38 jar-bio-formats-tools:
#17 33.46 [echo] isSnapshot = true
#17 33.58
#17 33.58 init-title:
#17 33.58 [echo] ----------=========== bio-formats-tools ===========----------
#17 33.59
#17 33.59 init-timestamp:
#17 33.59
#17 33.59 init:
#17 33.59
#17 33.59 copy-resources:
#17 33.59
#17 33.59 compile:
#17 34.00 [resolver:resolve] Resolving artifacts
#17 34.00
#17 34.00 bio-formats-tools.jar:
#17 34.01 [resolver:install] Using default POM (ome:bio-formats-tools:9.0.0-SNAPSHOT)
#17 34.01 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.pom
#17 34.01 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar
#17 34.01 [resolver:install] Installing ome:bio-formats-tools:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 34.01 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 34.01
#17 34.01 deps-tests:
#17 34.01
#17 34.01 jar-tests:
#17 34.09 [echo] isSnapshot = true
#17 34.27
#17 34.27 init-title:
#17 34.27 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 34.27
#17 34.27 init-timestamp:
#17 34.27
#17 34.27 init:
#17 34.27
#17 34.27 copy-resources:
#17 34.27
#17 34.27 compile:
#17 34.55 [resolver:resolve] Resolving artifacts
#17 34.56
#17 34.56 tests.jar:
#17 34.57 [resolver:install] Using default POM (ome:test-suite:9.0.0-SNAPSHOT)
#17 34.57 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.pom
#17 34.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.jar
#17 34.58 [resolver:install] Installing ome:test-suite:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 34.58 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 34.58
#17 34.58 jars:
#17 34.58
#17 34.58 tools:
#17 34.58 [echo] ----------=========== bioformats_package ===========----------
#17 34.71 [echo] isSnapshot = true
#17 34.88
#17 34.88 init-timestamp:
#17 34.88
#17 34.88 bundle:
#17 35.16 [resolver:resolve] Resolving artifacts
#17 35.17 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.21 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.3.0/ome-common-6.3.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.24 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.28 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.29 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.37 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.39 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.44 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.45 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.67 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.71 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.73 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.78 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.79 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.80 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.81 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.98 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.46 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.46 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.46 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.46 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.53 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.54 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.54 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.6.0/ome-xml-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.59 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.6.0/specification-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.64 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.65 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.2.0/ome-codecs-1.2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.66 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5/ome-jai-0.1.5.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.77 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/2.0.3/aircompressor-2.0.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.79 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.85 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.88 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.88 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.96 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.97 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.32 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.34 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.36 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.45 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.47 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.48 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.49 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.66 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.71 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.75 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.83 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.4.0/ome-mdbtools-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.84 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.4.0/metakit-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.84 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.4.0/ome-poi-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.94 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.95 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.10.0/cdm-core-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.31 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.10.0/httpservices-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.31 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.14/httpclient-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.40 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.44 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.14/httpmime-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.44 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-math3/3.6.1/commons-math3-3.6.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.68 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.8/re2j-1.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 38.69 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.01 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.02 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.03 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.18/slf4j-api-2.0.18.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.04 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.04 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.06 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.38 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.5.37/logback-core-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.48 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.5.37/logback-classic-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.84 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 46.18 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 46.70 [resolver:install] Using default POM (ome:bioformats_package:9.0.0-SNAPSHOT)
#17 46.70 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/bioformats_package-9.0.0-SNAPSHOT.pom
#17 46.71 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/bioformats_package-9.0.0-SNAPSHOT.jar
#17 46.74 [resolver:install] Installing ome:bioformats_package:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 46.75 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 46.75
#17 46.75 BUILD SUCCESSFUL
#17 46.75 Total time: 46 seconds
#17 DONE 47.5s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.2s
#19 exporting to image
#19 exporting layers
#19 exporting layers 4.6s done
#19 writing image sha256:2f8edc408fc5e4b67070942863abbd8eda44c16723521f5c8b27f0a7c27ab4cb done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 4.7s
Finished: SUCCESS
