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Full Log#14 403.6 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/1.0.2.v20150114/aether-api-1.0.2.v20150114.jar
#14 403.6 Progress (2): 177 kB | 0.4/2.3 MB
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#14 403.6 Progress (1): 0.4/2.3 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/1.0.2.v20150114/aether-spi-1.0.2.v20150114.jar (31 kB at 117 kB/s)
#14 403.6 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.3.2/org.eclipse.sisu.plexus-0.3.2.jar
#14 403.6 Progress (4): 0.7/2.3 MB | 173 kB | 122/136 kB | 88/147 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-impl/1.0.2.v20150114/aether-impl-1.0.2.v20150114.jar (173 kB at 641 kB/s)
#14 403.6 Downloading from central: https://repo.maven.apache.org/maven2/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar
#14 403.6 Progress (3): 0.9/2.3 MB | 136 kB | 147 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/1.0.2.v20150114/aether-api-1.0.2.v20150114.jar (136 kB at 492 kB/s)
#14 403.7 Progress (3): 1.0/2.3 MB | 147 kB | 33/205 kB
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Downloading from central: https://repo.maven.apache.org/maven2/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar
#14 403.7 Progress (3): 1.1/2.3 MB | 147 kB | 33/205 kB
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#14 403.7 Progress (2): 1.1/2.3 MB | 57/205 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.3.2/org.eclipse.sisu.inject-0.3.2.jar
#14 403.7 Progress (2): 1.1/2.3 MB | 61/205 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar (45 kB at 152 kB/s)
#14 403.7 Progress (4): 1.5/2.3 MB | 205 kB | 5.8 kB | 115/378 kB
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#14 403.7 Progress (3): 1.5/2.3 MB | 5.8 kB | 119/378 kB
Downloading from central: https://repo.maven.apache.org/maven2/com/google/inject/guice/4.0/guice-4.0-no_aop.jar
#14 403.7 Progress (3): 1.5/2.3 MB | 5.8 kB | 123/378 kB
Downloading from central: https://repo.maven.apache.org/maven2/javax/inject/javax.inject/1/javax.inject-1.jar
#14 403.7 Progress (3): 1.5/2.3 MB | 5.8 kB | 127/378 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar (5.8 kB at 19 kB/s)
#14 403.7 Progress (2): 1.6/2.3 MB | 217/378 kB
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Downloading from central: https://repo.maven.apache.org/maven2/aopalliance/aopalliance/1.0/aopalliance-1.0.jar
#14 403.7 Progress (2): 1.6/2.3 MB | 221/378 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/javax/inject/javax.inject/1/javax.inject-1.jar (2.5 kB at 7.8 kB/s)
#14 403.7 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.21/plexus-interpolation-1.21.jar
#14 403.7 Progress (4): 2.0/2.3 MB | 378 kB | 213/424 kB | 4.5 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.3.2/org.eclipse.sisu.inject-0.3.2.jar (378 kB at 1.2 MB/s)
#14 403.7 Progress (3): 2.1/2.3 MB | 266/424 kB | 4.5 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.2/plexus-classworlds-2.5.2.jar
#14 403.7 Progress (3): 2.1/2.3 MB | 270/424 kB | 4.5 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/aopalliance/aopalliance/1.0/aopalliance-1.0.jar (4.5 kB at 14 kB/s)
#14 403.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.4/commons-lang3-3.4.jar
#14 403.7 Progress (2): 2.1/2.3 MB | 279/424 kB
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#14 403.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-compress/1.20/commons-compress-1.20.jar
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#14 403.7 Progress (4): 246/290 kB | 26 kB | 154 kB | 61/632 kB
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#14 403.7 Progress (3): 250/290 kB | 154 kB | 66/632 kB
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#14 403.8 Progress (2): 290 kB | 287/632 kB
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#14 403.8 Progress (3): 356/632 kB | 37/76 kB | 36/195 kB
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#14 403.8 Progress (3): 356/632 kB | 37/76 kB | 40/195 kB
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Progress (5
#14 403.8 [output clipped, log limit 2MiB reached]
#14 503.9 SLF4J: No SLF4J providers were found.
#14 503.9 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 503.9 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 514.0s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 1.149 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.959 [echo] isSnapshot = true
#16 2.064
#16 2.064 copy-jars:
#16 2.064
#16 2.064 deps-formats-api:
#16 2.149 [echo] isSnapshot = true
#16 2.202
#16 2.202 install-pom:
#16 2.376 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 2.480 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 2.484 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.485
#16 2.485 jar-formats-api:
#16 2.601 [echo] isSnapshot = true
#16 2.751
#16 2.751 init-title:
#16 2.751 [echo] ----------=========== formats-api ===========----------
#16 2.751
#16 2.751 init-timestamp:
#16 2.758
#16 2.758 init:
#16 2.758
#16 2.758 copy-resources:
#16 2.759 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.772 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.775
#16 2.775 compile:
#16 2.964 [resolver:resolve] Resolving artifacts
#16 2.990 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.373 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.974 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.974 [javac] import loci.common.ReflectedUniverse;
#16 3.974 [javac] ^
#16 4.174 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.174 [javac] int currentIndex = r.getCoreIndex();
#16 4.174 [javac] ^
#16 4.174 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.175 [javac] r.setCoreIndex(coreIndex);
#16 4.175 [javac] ^
#16 4.175 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.175 [javac] r.setCoreIndex(currentIndex);
#16 4.175 [javac] ^
#16 4.275 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.275 [javac] public void setCoreIndex(int no) {
#16 4.275 [javac] ^
#16 4.275 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.275 [javac] public int getCoreIndex() {
#16 4.275 [javac] ^
#16 4.275 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.276 [javac] public int coreIndexToSeries(int index)
#16 4.276 [javac] ^
#16 4.276 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.276 [javac] public int seriesToCoreIndex(int series)
#16 4.276 [javac] ^
#16 4.276 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.276 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.276 [javac] ^
#16 4.376 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.376 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.376 [javac] ^
#16 4.376 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.376 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.376 [javac] ^
#16 4.376 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.376 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.377 [javac] ^
#16 4.377 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.377 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.377 [javac] ^
#16 4.477 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.477 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.477 [javac] ^
#16 4.477 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.477 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.477 [javac] ^
#16 4.578 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.578 [javac] public void setCoreIndex(int no) {
#16 4.578 [javac] ^
#16 4.578 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.578 [javac] public int getCoreIndex() {
#16 4.578 [javac] ^
#16 4.578 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.578 [javac] public int coreIndexToSeries(int index) {
#16 4.578 [javac] ^
#16 4.578 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.578 [javac] public int seriesToCoreIndex(int series) {
#16 4.578 [javac] ^
#16 4.578 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.578 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.578 [javac] ^
#16 4.578 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.578 [javac] return getReader().getCoreMetadataList();
#16 4.579 [javac] ^
#16 4.579 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.579 [javac] return getReader().getCoreIndex();
#16 4.579 [javac] ^
#16 4.579 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.579 [javac] getReader().setCoreIndex(no);
#16 4.579 [javac] ^
#16 4.579 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.579 [javac] return getReader().seriesToCoreIndex(series);
#16 4.579 [javac] ^
#16 4.579 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.579 [javac] return getReader().coreIndexToSeries(index);
#16 4.579 [javac] ^
#16 4.679 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.679 [javac] public void setCoreIndex(int no) {
#16 4.680 [javac] ^
#16 4.680 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.680 [javac] public int getCoreIndex() {
#16 4.680 [javac] ^
#16 4.680 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.680 [javac] public int coreIndexToSeries(int index) {
#16 4.680 [javac] ^
#16 4.680 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.680 [javac] public int seriesToCoreIndex(int series) {
#16 4.680 [javac] ^
#16 4.680 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.680 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.680 [javac] ^
#16 4.680 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.680 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.680 [javac] ^
#16 4.680 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.680 [javac] return reader.getCoreIndex();
#16 4.680 [javac] ^
#16 4.680 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.680 [javac] reader.setCoreIndex(no);
#16 4.680 [javac] ^
#16 4.680 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.681 [javac] return reader.seriesToCoreIndex(series);
#16 4.681 [javac] ^
#16 4.681 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.681 [javac] return reader.coreIndexToSeries(index);
#16 4.681 [javac] ^
#16 4.854 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.854 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.854 [javac] 36 warnings
#16 4.855
#16 4.855 formats-api.jar:
#16 4.855 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.879 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.910 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 4.914 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 4.961 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 4.963 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.965 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.965
#16 4.965 deps-turbojpeg:
#16 4.965
#16 4.965 jar-turbojpeg:
#16 5.062 [echo] isSnapshot = true
#16 5.208
#16 5.208 init-title:
#16 5.209 [echo] ----------=========== turbojpeg ===========----------
#16 5.209
#16 5.209 init-timestamp:
#16 5.209
#16 5.209 init:
#16 5.209
#16 5.209 copy-resources:
#16 5.209 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.211
#16 5.211 compile:
#16 5.220 [resolver:resolve] Resolving artifacts
#16 5.224 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.426 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 6.099 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 6.099 [javac] protected void finalize() throws Throwable {
#16 6.099 [javac] ^
#16 6.099 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 6.099 [javac] super.finalize();
#16 6.099 [javac] ^
#16 6.099 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 6.099 [javac] protected void finalize() throws Throwable {
#16 6.099 [javac] ^
#16 6.099 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 6.099 [javac] super.finalize();
#16 6.099 [javac] ^
#16 6.099 [javac] 5 warnings
#16 6.100
#16 6.100 jar:
#16 6.104 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.287 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 6.295 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 6.393 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 6.396 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.399 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.401
#16 6.401 deps-formats-bsd:
#16 6.401
#16 6.401 jar-formats-bsd:
#16 6.518 [echo] isSnapshot = true
#16 6.653
#16 6.653 init-title:
#16 6.653 [echo] ----------=========== formats-bsd ===========----------
#16 6.653
#16 6.653 init-timestamp:
#16 6.654
#16 6.654 init:
#16 6.654
#16 6.654 copy-resources:
#16 6.654 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.657 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.658
#16 6.658 compile:
#16 6.867 [resolver:resolve] Resolving artifacts
#16 6.893 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.102 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 8.204 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.204 [javac] import loci.common.ReflectedUniverse;
#16 8.204 [javac] ^
#16 8.604 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.604 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.604 [javac] ^
#16 8.604 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.604 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.604 [javac] ^
#16 8.604 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.604 [javac] int n = reader.getCoreMetadataList().size();
#16 8.604 [javac] ^
#16 8.604 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.605 [javac] reader.setCoreIndex(coreIndex);
#16 8.605 [javac] ^
#16 8.605 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.605 [javac] int n = reader.getCoreMetadataList().size();
#16 8.605 [javac] ^
#16 8.605 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.605 [javac] int n = reader.getCoreMetadataList().size();
#16 8.605 [javac] ^
#16 8.605 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.605 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.605 [javac] ^
#16 8.605 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.605 [javac] int n = reader.getCoreMetadataList().size();
#16 8.605 [javac] ^
#16 8.605 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.605 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.605 [javac] ^
#16 8.605 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.605 [javac] int n = reader.getCoreMetadataList().size();
#16 8.605 [javac] ^
#16 8.605 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.605 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.605 [javac] ^
#16 8.605 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.605 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.605 [javac] ^
#16 8.605 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.605 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.605 [javac] ^
#16 8.705 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.705 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.705 [javac] ^
#16 8.705 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.705 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.705 [javac] ^
#16 8.706 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.706 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.706 [javac] ^
#16 8.706 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.706 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.706 [javac] ^
#16 8.706 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.706 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.706 [javac] ^
#16 8.706 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.706 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.706 [javac] ^
#16 8.806 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.806 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.806 [javac] ^
#16 8.906 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.906 [javac] BitWriter out = new BitWriter();
#16 8.906 [javac] ^
#16 8.906 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.906 [javac] BitWriter out = new BitWriter();
#16 8.906 [javac] ^
#16 9.006 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.007 [javac] return new Double(v);
#16 9.007 [javac] ^
#16 9.707 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1872: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.707 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.707 [javac] ^
#16 9.707 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1879: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.707 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.707 [javac] ^
#16 9.707 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:1886: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.707 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.707 [javac] ^
#16 9.808 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.808 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 9.808 [javac] ^
#16 10.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.01 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 10.01 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 10.11 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 10.11 [javac] ^
#16 10.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.21 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.21 [javac] ^
#16 10.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.21 [javac] protected ReflectedUniverse r;
#16 10.21 [javac] ^
#16 10.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.21 [javac] r = new ReflectedUniverse();
#16 10.21 [javac] ^
#16 10.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 10.31 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.31 [javac] ^
#16 10.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 10.31 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.31 [javac] ^
#16 10.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 10.31 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.31 [javac] ^
#16 10.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 10.31 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.31 [javac] ^
#16 10.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 10.31 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.31 [javac] ^
#16 10.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 10.31 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.31 [javac] ^
#16 10.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 10.31 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.31 [javac] ^
#16 10.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 10.31 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.31 [javac] ^
#16 10.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 10.31 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.31 [javac] ^
#16 10.41 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.41 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.41 [javac] ^
#16 10.41 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.41 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.41 [javac] ^
#16 10.41 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.41 [javac] result[i] = new Double(readNumber().doubleValue());
#16 10.41 [javac] ^
#16 10.46 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.46 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.46 [javac] 46 warnings
#16 10.46
#16 10.46 formats-bsd.jar:
#16 10.47 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.57 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 10.58 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 10.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 10.63 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 10.63 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.63
#16 10.63 deps-formats-gpl:
#16 10.63
#16 10.63 jar-formats-gpl:
#16 10.72 [echo] isSnapshot = true
#16 10.87
#16 10.87 init-title:
#16 10.87 [echo] ----------=========== formats-gpl ===========----------
#16 10.87
#16 10.87 init-timestamp:
#16 10.87
#16 10.87 init:
#16 10.87
#16 10.87 copy-resources:
#16 10.87 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.87 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.87
#16 10.87 compile:
#16 11.29 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.53 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.57 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.99 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 12.00 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.01 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.04 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.17 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 12.27 [resolver:resolve] Resolving artifacts
#16 12.27 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.27 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.32 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.32 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.35 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.35 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.75 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.75 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.79 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.00 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 14.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.20 [javac] import loci.formats.codec.BitWriter;
#16 14.20 [javac] ^
#16 14.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.30 [javac] import loci.formats.codec.BitWriter;
#16 14.30 [javac] ^
#16 16.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 16.20 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 16.20 [javac] ^
#16 16.20 [javac] cast to Object for a varargs call
#16 16.20 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 16.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.30 [javac] BitWriter bits = null;
#16 16.30 [javac] ^
#16 16.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.30 [javac] bits = new BitWriter(planes[index].length / 8);
#16 16.30 [javac] ^
#16 16.60 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 16.60 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 16.60 [javac] ^
#16 17.00 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.00 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.00 [javac] ^
#16 17.00 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.00 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.00 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 17.30 [javac] List<Attribute> attributes = variable.getAttributes();
#16 17.30 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.30 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 17.30 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.30 [javac] String groupName = group.getName();
#16 17.30 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 17.30 [javac] List<Attribute> attributes = group.getAttributes();
#16 17.30 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.30 [javac] String attributeName = attribute.getName();
#16 17.30 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.30 [javac] String variableName = variable.getName();
#16 17.30 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 17.30 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 17.30 [javac] ^
#16 17.30 [javac] Note: Some input files use unchecked or unsafe operations.
#16 17.30 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.30 [javac] 16 warnings
#16 17.31
#16 17.31 formats-gpl.jar:
#16 17.32 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 17.46 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 17.46 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 17.51 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 17.51 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 17.51 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 17.51
#16 17.51 deps-bio-formats-plugins:
#16 17.51
#16 17.51 jar-bio-formats-plugins:
#16 17.60 [echo] isSnapshot = true
#16 17.74
#16 17.74 init-title:
#16 17.74 [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.74
#16 17.74 init-timestamp:
#16 17.74
#16 17.74 init:
#16 17.74
#16 17.74 copy-resources:
#16 17.74 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.75 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.75
#16 17.75 compile:
#16 18.00 [resolver:resolve] Resolving artifacts
#16 18.02 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.33 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.03 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.03 [javac] import loci.common.ReflectedUniverse;
#16 19.03 [javac] ^
#16 19.03 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.03 [javac] import loci.common.ReflectedUniverse;
#16 19.03 [javac] ^
#16 19.53 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 19.53 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 19.53 [javac] ^
#16 19.63 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.63 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.63 [javac] ^
#16 19.63 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.63 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.63 [javac] ^
#16 19.73 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.73 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.73 [javac] ^
#16 19.73 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.73 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.73 [javac] ^
#16 20.13 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 20.13 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 20.13 [javac] 8 warnings
#16 20.14
#16 20.14 bio-formats-plugins.jar:
#16 20.14 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 20.17 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 20.17 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 20.17 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 20.18 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.18 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 20.18
#16 20.18 deps-bio-formats-tools:
#16 20.18
#16 20.18 jar-bio-formats-tools:
#16 20.29 [echo] isSnapshot = true
#16 20.42
#16 20.42 init-title:
#16 20.42 [echo] ----------=========== bio-formats-tools ===========----------
#16 20.42
#16 20.42 init-timestamp:
#16 20.42
#16 20.42 init:
#16 20.42
#16 20.42 copy-resources:
#16 20.43 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.43
#16 20.43 compile:
#16 20.70 [resolver:resolve] Resolving artifacts
#16 20.71 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.91 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 22.07 [javac] 1 warning
#16 22.07
#16 22.07 bio-formats-tools.jar:
#16 22.08 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 22.08 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 22.09 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 22.09 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 22.09 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 22.09 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 22.09
#16 22.09 deps-tests:
#16 22.09
#16 22.09 jar-tests:
#16 22.18 [echo] isSnapshot = true
#16 22.32
#16 22.32 init-title:
#16 22.32 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 22.32
#16 22.32 init-timestamp:
#16 22.32
#16 22.32 init:
#16 22.32
#16 22.32 copy-resources:
#16 22.32 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.32
#16 22.32 compile:
#16 22.67 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.75 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.77 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.17 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.59 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 23.77 [resolver:resolve] Resolving artifacts
#16 23.78 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.82 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.84 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.23 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.51 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 24.52 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 24.73 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 25.73 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.73 [javac] int index = unflattenedReader.getCoreIndex();
#16 25.73 [javac] ^
#16 25.73 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 25.73 [javac] reader.setCoreIndex(index);
#16 25.73 [javac] ^
#16 26.03 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.03 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 26.03 [javac] ^
#16 26.03 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 26.03 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 26.03 [javac] ^
#16 26.23 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.23 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 26.23 [javac] ^
#16 26.23 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.23 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 26.23 [javac] ^
#16 26.31 [javac] Note: Some input files use unchecked or unsafe operations.
#16 26.31 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 26.31 [javac] 7 warnings
#16 26.31
#16 26.31 tests.jar:
#16 26.32 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 26.33 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 26.33 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 26.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 26.38 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.38 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.38
#16 26.38 jars:
#16 26.38
#16 26.38 copy-jars:
#16 26.38
#16 26.38 deps-formats-api:
#16 26.42 [echo] isSnapshot = true
#16 26.46
#16 26.46 install-pom:
#16 26.58 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 26.59 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.59 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 26.59
#16 26.59 jar-formats-api:
#16 26.67 [echo] isSnapshot = true
#16 26.79
#16 26.79 init-title:
#16 26.79 [echo] ----------=========== formats-api ===========----------
#16 26.79
#16 26.79 init-timestamp:
#16 26.79
#16 26.79 init:
#16 26.79
#16 26.79 copy-resources:
#16 26.80
#16 26.80 compile:
#16 26.94 [resolver:resolve] Resolving artifacts
#16 26.96
#16 26.96 formats-api.jar:
#16 26.97 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 26.98 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 26.98 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 26.98 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.98 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 26.98
#16 26.98 deps-turbojpeg:
#16 26.98
#16 26.98 jar-turbojpeg:
#16 27.06 [echo] isSnapshot = true
#16 27.18
#16 27.18 init-title:
#16 27.18 [echo] ----------=========== turbojpeg ===========----------
#16 27.18
#16 27.18 init-timestamp:
#16 27.18
#16 27.18 init:
#16 27.18
#16 27.18 copy-resources:
#16 27.19
#16 27.19 compile:
#16 27.19 [resolver:resolve] Resolving artifacts
#16 27.20
#16 27.20 jar:
#16 27.20 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 27.21 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 27.21 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 27.21 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.21 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 27.21
#16 27.21 deps-formats-bsd:
#16 27.21
#16 27.21 jar-formats-bsd:
#16 27.29 [echo] isSnapshot = true
#16 27.42
#16 27.42 init-title:
#16 27.42 [echo] ----------=========== formats-bsd ===========----------
#16 27.42
#16 27.42 init-timestamp:
#16 27.42
#16 27.42 init:
#16 27.42
#16 27.42 copy-resources:
#16 27.42
#16 27.42 compile:
#16 27.60 [resolver:resolve] Resolving artifacts
#16 27.62
#16 27.62 formats-bsd.jar:
#16 27.65 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 27.65 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 27.66 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 27.66 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.66 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 27.66
#16 27.66 deps-formats-gpl:
#16 27.66
#16 27.66 jar-formats-gpl:
#16 27.74 [echo] isSnapshot = true
#16 27.87
#16 27.87 init-title:
#16 27.87 [echo] ----------=========== formats-gpl ===========----------
#16 27.87
#16 27.87 init-timestamp:
#16 27.87
#16 27.87 init:
#16 27.87
#16 27.87 copy-resources:
#16 27.87
#16 27.87 compile:
#16 28.09 [resolver:resolve] Resolving artifacts
#16 28.11
#16 28.11 formats-gpl.jar:
#16 28.15 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 28.15 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 28.15 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 28.15 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.15 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 28.15
#16 28.15 deps-bio-formats-plugins:
#16 28.15
#16 28.15 jar-bio-formats-plugins:
#16 28.23 [echo] isSnapshot = true
#16 28.36
#16 28.36 init-title:
#16 28.36 [echo] ----------=========== bio-formats_plugins ===========----------
#16 28.36
#16 28.36 init-timestamp:
#16 28.36
#16 28.36 init:
#16 28.36
#16 28.36 copy-resources:
#16 28.36
#16 28.36 compile:
#16 28.60 [resolver:resolve] Resolving artifacts
#16 28.62
#16 28.62 bio-formats-plugins.jar:
#16 28.63 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 28.63 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 28.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 28.65 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.65 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 28.65
#16 28.65 deps-bio-formats-tools:
#16 28.65
#16 28.65 jar-bio-formats-tools:
#16 28.73 [echo] isSnapshot = true
#16 28.92
#16 28.92 init-title:
#16 28.92 [echo] ----------=========== bio-formats-tools ===========----------
#16 28.92
#16 28.92 init-timestamp:
#16 28.92
#16 28.92 init:
#16 28.92
#16 28.92 copy-resources:
#16 28.92
#16 28.92 compile:
#16 29.15 [resolver:resolve] Resolving artifacts
#16 29.16
#16 29.16 bio-formats-tools.jar:
#16 29.16 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 29.17 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 29.17 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 29.17 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.17 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 29.17
#16 29.17 deps-tests:
#16 29.17
#16 29.17 jar-tests:
#16 29.25 [echo] isSnapshot = true
#16 29.38
#16 29.38 init-title:
#16 29.38 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.38
#16 29.38 init-timestamp:
#16 29.38
#16 29.38 init:
#16 29.38
#16 29.38 copy-resources:
#16 29.38
#16 29.38 compile:
#16 29.61 [resolver:resolve] Resolving artifacts
#16 29.62
#16 29.62 tests.jar:
#16 29.62 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 29.63 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 29.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 29.63 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 29.63 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 29.63
#16 29.63 jars:
#16 29.63
#16 29.63 tools:
#16 29.63 [echo] ----------=========== bioformats_package ===========----------
#16 29.71 [echo] isSnapshot = true
#16 29.84
#16 29.84 init-timestamp:
#16 29.84
#16 29.84 bundle:
#16 30.09 [resolver:resolve] Resolving artifacts
#16 30.10 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.13 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.23-SNAPSHOT/ome-common-6.0.23-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.15 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.18 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.18 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.24 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.26 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.31 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.32 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.55 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.60 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.62 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.68 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.68 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.70 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.70 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.87 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.35 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.36 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.36 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.37 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.45 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.46 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.46 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.52 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.57 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.59 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.60 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.74 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.76 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.84 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.88 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.88 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.92 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.94 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.37 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.39 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.42 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.49 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.59 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.61 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.63 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.64 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.87 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.94 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.00 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.10 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.11 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.11 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.24 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.25 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.70 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.71 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.83 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.88 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.89 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.90 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.06 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.08 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.08 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.10 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.10 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.13 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.53 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.64 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.94 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 40.36 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 40.87 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 40.87 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 40.88 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 40.91 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 40.91 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 40.92
#16 40.92 BUILD SUCCESSFUL
#16 40.92 Total time: 39 seconds
#16 DONE 42.8s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.3s done
#18 writing image sha256:bedbfcfb0efd907f05a13c68c7d42c643662280ac89226951ea29082b28c0df5 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.4s
Finished: SUCCESS
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