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#15 445.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.7/nexus-staging-maven-plugin-1.6.7.pom
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#15 447.6 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-plugins-restlet1x/2.9.1-02/nexus-plugins-restlet1x-2.9.1-02.pom
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#15 447.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-plugins/2.9.1-02/nexus-plugins-2.9.1-02.pom
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#15 447.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.7/nexus-staging-maven-plugin-1.6.7.jar
#15 447.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.9.1-02/nexus-client-core-2.9.1-02.jar
#15 447.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-common/1.6.7/nexus-common-1.6.7.jar
#15 447.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-restlet1x-model/2.9.1-02/nexus-restlet1x-model-2.9.1-02.jar
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#15 447.8 Progress (3): 250 kB | 211 kB | 69/160 kB
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#15 447.8 Progress (2): 211 kB | 138/160 kB
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#15 447.8 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-restlet1x-model/2.9.1-02/nexus-restlet1x-model-2.9.1-02.jar (160 kB at 1.4 MB/s)
#15 447.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.pom
#15 448.0 Progress (1): 4.1 kB
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#15 448.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.jar
#15 448.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/3.1.1/maven-settings-3.1.1.jar
#15 448.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/3.1.1/maven-core-3.1.1.jar
#15 448.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/3.1.1/maven-model-3.1.1.jar
#15 448.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/3.1.1/maven-artifact-3.1.1.jar
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#15 448.2 Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar (18 kB at 93 kB/s)
#15 448.2 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/10.0.1/guava-10.0.1.jar
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#15 448.2 Downloading from central: https://repo.maven.apache.org/maven2/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar (134 kB at 542 kB/s)
#15 448.3 Progress (4): 197 kB | 0.3/1.5 MB | 145 kB | 28/33 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar
#15 448.3 Progress (4): 197 kB | 0.3/1.5 MB | 145 kB | 33 kB
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#15 448.3 [output clipped, log limit 2MiB reached]
#15 494.1 WARNING: A restricted method in java.lang.System has been called
#15 494.1 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 494.1 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 494.1 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 494.1
#15 540.5 SLF4J: No SLF4J providers were found.
#15 540.5 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 540.5 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 540.8 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 540.8 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 540.8 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 540.8 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 548.7s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.1s
#17 [13/14] RUN ant jars tools
#17 0.548 Buildfile: /bio-formats-build/bioformats/build.xml
#17 0.927 [echo] isSnapshot = true
#17 1.035
#17 1.035 copy-jars:
#17 1.035
#17 1.035 deps-formats-api:
#17 1.115 [echo] isSnapshot = true
#17 1.175
#17 1.175 install-pom:
#17 1.346 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/pom-bio-formats-9.0.0-SNAPSHOT.pom
#17 1.358 [resolver:install] Installing ome:pom-bio-formats:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 1.363 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 1.365
#17 1.365 jar-formats-api:
#17 1.482 [echo] isSnapshot = true
#17 1.630
#17 1.630 init-title:
#17 1.631 [echo] ----------=========== formats-api ===========----------
#17 1.631
#17 1.631 init-timestamp:
#17 1.643
#17 1.643 init:
#17 1.643
#17 1.643 copy-resources:
#17 1.644 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.661 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.663
#17 1.663 compile:
#17 1.852 [resolver:resolve] Resolving artifacts
#17 1.877 [javac] Compiling 59 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 2.090 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 2.090 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 2.090 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 2.996 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 2.996 [javac] int currentIndex = r.getCoreIndex();
#17 2.996 [javac] ^
#17 2.996 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 2.997 [javac] r.setCoreIndex(coreIndex);
#17 2.997 [javac] ^
#17 2.997 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 2.997 [javac] r.setCoreIndex(currentIndex);
#17 2.997 [javac] ^
#17 3.098 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.098 [javac] public void setCoreIndex(int no) {
#17 3.098 [javac] ^
#17 3.098 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.098 [javac] public int getCoreIndex() {
#17 3.099 [javac] ^
#17 3.099 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.099 [javac] public int coreIndexToSeries(int index)
#17 3.099 [javac] ^
#17 3.099 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.099 [javac] public int seriesToCoreIndex(int series)
#17 3.099 [javac] ^
#17 3.099 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.099 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.099 [javac] ^
#17 3.200 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.200 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 3.200 [javac] ^
#17 3.200 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.200 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 3.200 [javac] ^
#17 3.200 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.200 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 3.200 [javac] ^
#17 3.200 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.200 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 3.200 [javac] ^
#17 3.301 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 3.301 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 3.301 [javac] ^
#17 3.301 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.301 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.301 [javac] ^
#17 3.301 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.301 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.301 [javac] ^
#17 3.401 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:791: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.401 [javac] public void setCoreIndex(int no) {
#17 3.402 [javac] ^
#17 3.402 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.402 [javac] public int getCoreIndex() {
#17 3.402 [javac] ^
#17 3.402 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:801: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.402 [javac] public int coreIndexToSeries(int index) {
#17 3.402 [javac] ^
#17 3.402 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:796: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.402 [javac] public int seriesToCoreIndex(int series) {
#17 3.402 [javac] ^
#17 3.403 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:605: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.403 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.403 [javac] ^
#17 3.503 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:606: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.503 [javac] return getReader().getCoreMetadataList();
#17 3.503 [javac] ^
#17 3.503 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:786: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.504 [javac] return getReader().getCoreIndex();
#17 3.504 [javac] ^
#17 3.504 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:792: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.504 [javac] getReader().setCoreIndex(no);
#17 3.505 [javac] ^
#17 3.505 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:797: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.505 [javac] return getReader().seriesToCoreIndex(series);
#17 3.505 [javac] ^
#17 3.505 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:802: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.505 [javac] return getReader().coreIndexToSeries(index);
#17 3.505 [javac] ^
#17 3.505 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.505 [javac] public void setCoreIndex(int no) {
#17 3.505 [javac] ^
#17 3.505 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.505 [javac] public int getCoreIndex() {
#17 3.505 [javac] ^
#17 3.505 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.505 [javac] public int coreIndexToSeries(int index) {
#17 3.505 [javac] ^
#17 3.506 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.506 [javac] public int seriesToCoreIndex(int series) {
#17 3.506 [javac] ^
#17 3.506 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.506 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.506 [javac] ^
#17 3.506 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.506 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 3.506 [javac] ^
#17 3.506 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.506 [javac] return reader.getCoreIndex();
#17 3.506 [javac] ^
#17 3.507 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.507 [javac] reader.setCoreIndex(no);
#17 3.507 [javac] ^
#17 3.507 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.507 [javac] return reader.seriesToCoreIndex(series);
#17 3.507 [javac] ^
#17 3.507 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.507 [javac] return reader.coreIndexToSeries(index);
#17 3.508 [javac] ^
#17 3.708 [javac] Note: Some input files use unchecked or unsafe operations.
#17 3.708 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 3.708 [javac] 36 warnings
#17 3.712
#17 3.712 formats-api.jar:
#17 3.713 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 3.742 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 3.774 [resolver:install] Using default POM (ome:formats-api:9.0.0-SNAPSHOT)
#17 3.778 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.pom
#17 3.779 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar
#17 3.780 [resolver:install] Installing ome:formats-api:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 3.784 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 3.785
#17 3.785 deps-turbojpeg:
#17 3.785
#17 3.785 jar-turbojpeg:
#17 3.884 [echo] isSnapshot = true
#17 4.021
#17 4.021 init-title:
#17 4.022 [echo] ----------=========== turbojpeg ===========----------
#17 4.022
#17 4.022 init-timestamp:
#17 4.022
#17 4.022 init:
#17 4.022
#17 4.022 copy-resources:
#17 4.023 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.023
#17 4.023 compile:
#17 4.033 [resolver:resolve] Resolving artifacts
#17 4.035 [javac] Compiling 8 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.238 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 4.238 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 4.238 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 4.739 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.739 [javac] protected void finalize() throws Throwable {
#17 4.739 [javac] ^
#17 4.739 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.740 [javac] super.finalize();
#17 4.740 [javac] ^
#17 4.740 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.740 [javac] protected void finalize() throws Throwable {
#17 4.740 [javac] ^
#17 4.740 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.740 [javac] super.finalize();
#17 4.740 [javac] ^
#17 4.740 [javac] 5 warnings
#17 4.756
#17 4.756 jar:
#17 4.759 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 4.932 [resolver:install] Using default POM (ome:turbojpeg:9.0.0-SNAPSHOT)
#17 4.939 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.pom
#17 4.941 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar
#17 4.943 [resolver:install] Installing ome:turbojpeg:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 4.946 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 4.947
#17 4.947 deps-formats-bsd:
#17 4.948
#17 4.948 jar-formats-bsd:
#17 5.055 [echo] isSnapshot = true
#17 5.188
#17 5.188 init-title:
#17 5.189 [echo] ----------=========== formats-bsd ===========----------
#17 5.189
#17 5.189 init-timestamp:
#17 5.189
#17 5.189 init:
#17 5.189
#17 5.189 copy-resources:
#17 5.190 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.192 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.193
#17 5.193 compile:
#17 5.415 [resolver:resolve] Resolving artifacts
#17 5.436 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.646 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 5.646 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 5.646 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.249 [javac] core.size() != reader.getCoreMetadataList().size())
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.249 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.249 [javac] int n = reader.getCoreMetadataList().size();
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.249 [javac] reader.setCoreIndex(coreIndex);
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.249 [javac] int n = reader.getCoreMetadataList().size();
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.249 [javac] int n = reader.getCoreMetadataList().size();
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 7.249 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.249 [javac] int n = reader.getCoreMetadataList().size();
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 7.249 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.249 [javac] int n = reader.getCoreMetadataList().size();
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.249 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.249 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.249 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.249 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.249 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.249 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.249 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.249 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 7.249 [javac] ^
#17 7.249 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.249 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 7.249 [javac] ^
#17 7.450 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.450 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 7.450 [javac] ^
#17 7.450 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:71: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 7.450 [javac] public static final String CI_SERVER = "http://ci.openmicroscopy.org";
#17 7.450 [javac] ^
#17 7.450 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:78: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 7.450 [javac] public static final String TRUNK_BUILD =
#17 7.451 [javac] ^
#17 7.451 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:86: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 7.451 [javac] public static final String DAILY_BUILD =
#17 7.451 [javac] ^
#17 7.451 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:106: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 7.451 [javac] public static final String[] INDIVIDUAL_JARS = new String[] {
#17 7.451 [javac] ^
#17 7.451 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:228: warning: [deprecation] URL(String) in URL has been deprecated
#17 7.451 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 7.451 [javac] ^
#17 7.451 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:277: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 7.451 [javac] public boolean installIndividualJars(String urlDir, String downloadDir) {
#17 7.451 [javac] ^
#17 7.451 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:298: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 7.451 [javac] public boolean install(String urlPath, String downloadPath) {
#17 7.451 [javac] ^
#17 7.552 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitBuffer.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 7.552 [javac] public class BitBuffer {
#17 7.552 [javac] ^
#17 7.552 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitWriter.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 7.552 [javac] public class BitWriter {
#17 7.552 [javac] ^
#17 7.552 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 7.552 [javac] BitWriter out = new BitWriter();
#17 7.552 [javac] ^
#17 7.552 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 7.552 [javac] BitWriter out = new BitWriter();
#17 7.552 [javac] ^
#17 7.653 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:534: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 7.653 [javac] return new Double(v);
#17 7.653 [javac] ^
#17 8.254 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2214: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.254 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 8.254 [javac] ^
#17 8.254 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2221: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.254 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 8.254 [javac] ^
#17 8.254 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2228: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 8.254 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 8.254 [javac] ^
#17 8.456 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 8.456 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 8.456 [javac] ^
#17 8.657 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:629: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.657 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 8.657 [javac] ^
#17 8.657 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1387: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 8.657 [javac] public MetadataStore getMetadataStoreForDisplay() {
#17 8.657 [javac] ^
#17 8.657 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1405: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 8.657 [javac] public MetadataStore getMetadataStoreForConversion() {
#17 8.657 [javac] ^
#17 8.657 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 8.657 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 8.657 [javac] ^
#17 8.758 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 8.758 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 8.758 [javac] ^
#17 8.858 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.858 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 8.858 [javac] ^
#17 8.858 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 8.858 [javac] protected ReflectedUniverse r;
#17 8.859 [javac] ^
#17 8.859 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 8.859 [javac] r = new ReflectedUniverse();
#17 8.859 [javac] ^
#17 8.859 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1044: warning: [deprecation] NM in UNITS has been deprecated
#17 8.859 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 8.859 [javac] ^
#17 8.859 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1076: warning: [deprecation] MM in UNITS has been deprecated
#17 8.859 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 8.859 [javac] ^
#17 8.859 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 8.859 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 8.859 [javac] ^
#17 8.859 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1091: warning: [deprecation] MM in UNITS has been deprecated
#17 8.859 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 8.859 [javac] ^
#17 8.859 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#17 8.859 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 8.859 [javac] ^
#17 8.859 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1116: warning: [deprecation] MM in UNITS has been deprecated
#17 8.859 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 8.859 [javac] ^
#17 8.859 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1122: warning: [deprecation] MM in UNITS has been deprecated
#17 8.859 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 8.859 [javac] ^
#17 8.960 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#17 8.960 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 8.960 [javac] ^
#17 8.960 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1175: warning: [deprecation] MM in UNITS has been deprecated
#17 8.960 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 8.960 [javac] ^
#17 8.960 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 8.960 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 8.960 [javac] ^
#17 8.960 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 8.960 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 8.960 [javac] ^
#17 8.960 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 8.960 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 8.960 [javac] ^
#17 8.960 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 8.960 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 8.960 [javac] ^
#17 9.060 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:113: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 9.060 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 9.060 [javac] ^
#17 9.061 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:324: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.061 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 9.061 [javac] ^
#17 9.061 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:346: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.061 [javac] result[i] = new Double(readNumber().doubleValue());
#17 9.061 [javac] ^
#17 9.116 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/UpgradeCheck.java:70: warning: [deprecation] install(String,String) in UpgradeChecker has been deprecated
#17 9.116 [javac] checker.install(url, UpgradeChecker.TOOLS);
#17 9.116 [javac] ^
#17 9.116 [javac] Note: Some input files use unchecked or unsafe operations.
#17 9.116 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 9.116 [javac] 62 warnings
#17 9.117
#17 9.117 formats-bsd.jar:
#17 9.126 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 9.234 [resolver:install] Using default POM (ome:formats-bsd:9.0.0-SNAPSHOT)
#17 9.238 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.pom
#17 9.239 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar
#17 9.240 [resolver:install] Installing ome:formats-bsd:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 9.242 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 9.243
#17 9.243 deps-formats-gpl:
#17 9.243
#17 9.243 jar-formats-gpl:
#17 9.336 [echo] isSnapshot = true
#17 9.484
#17 9.484 init-title:
#17 9.484 [echo] ----------=========== formats-gpl ===========----------
#17 9.485
#17 9.485 init-timestamp:
#17 9.485
#17 9.485 init:
#17 9.485
#17 9.485 copy-resources:
#17 9.486 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 9.487 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 9.488
#17 9.488 compile:
#17 9.734 [resolver:resolve] Resolving artifacts
#17 9.751 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 10.07 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 10.07 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 10.07 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 13.38 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1325: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 13.38 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 13.38 [javac] ^
#17 13.38 [javac] cast to Object for a varargs call
#17 13.38 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 13.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 13.48 [javac] BitWriter bits = null;
#17 13.48 [javac] ^
#17 13.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 13.48 [javac] bits = new BitWriter(planes[index].length / 8);
#17 13.48 [javac] ^
#17 13.88 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 13.88 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 13.88 [javac] ^
#17 14.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:470: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 14.28 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 14.28 [javac] ^
#17 14.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:499: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 14.28 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 14.28 [javac] ^
#17 14.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 14.28 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 14.28 [javac] ^
#17 14.28 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 14.28 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 14.28 [javac] ^
#17 14.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 14.58 [javac] Variable variable = group.findVariable(variableName);
#17 14.58 [javac] ^
#17 14.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 14.58 [javac] Variable variable = group.findVariable(variableName);
#17 14.58 [javac] ^
#17 14.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 14.58 [javac] List<Attribute> attributes = variable.getAttributes();
#17 14.58 [javac] ^
#17 14.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 14.64 [javac] String groupName = group.getName();
#17 14.64 [javac] ^
#17 14.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 14.64 [javac] List<Attribute> attributes = group.getAttributes();
#17 14.64 [javac] ^
#17 14.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 14.64 [javac] String variableName = variable.getName();
#17 14.64 [javac] ^
#17 14.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 14.64 [javac] Group nextParent = parent.findGroup(token);
#17 14.64 [javac] ^
#17 14.64 [javac] Note: Some input files use unchecked or unsafe operations.
#17 14.64 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 14.64 [javac] 16 warnings
#17 14.64
#17 14.64 formats-gpl.jar:
#17 14.65 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 14.78 [resolver:install] Using default POM (ome:formats-gpl:9.0.0-SNAPSHOT)
#17 14.78 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.pom
#17 14.78 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar
#17 14.78 [resolver:install] Installing ome:formats-gpl:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 14.79 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 14.79
#17 14.79 deps-bio-formats-plugins:
#17 14.79
#17 14.79 jar-bio-formats-plugins:
#17 14.87 [echo] isSnapshot = true
#17 14.98
#17 14.98 init-title:
#17 14.98 [echo] ----------=========== bio-formats_plugins ===========----------
#17 14.98
#17 14.98 init-timestamp:
#17 14.98
#17 14.98 init:
#17 14.98
#17 14.98 copy-resources:
#17 14.98 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 14.98 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 14.98
#17 14.98 compile:
#17 15.21 [resolver:resolve] Resolving artifacts
#17 15.22 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 15.53 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 15.53 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 15.53 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 16.73 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:98: warning: [deprecation] install(String,String) in UpgradeChecker has been deprecated
#17 16.73 [javac] success = new UpgradeChecker().install(urlPath, jarPath);
#17 16.73 [javac] ^
#17 16.83 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 16.83 [javac] URL url = new URL(urlPath);
#17 16.83 [javac] ^
#17 16.93 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 16.93 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 16.93 [javac] ^
#17 16.93 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 16.93 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 16.93 [javac] ^
#17 17.03 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 17.03 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 17.03 [javac] ^
#17 17.03 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 17.03 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 17.03 [javac] ^
#17 17.23 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 17.23 [javac] url = new URL(path);
#17 17.23 [javac] ^
#17 17.33 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 17.33 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 17.33 [javac] 8 warnings
#17 17.34
#17 17.34 bio-formats-plugins.jar:
#17 17.35 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 17.37 [resolver:install] Using default POM (ome:bio-formats_plugins:9.0.0-SNAPSHOT)
#17 17.37 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.pom
#17 17.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar
#17 17.38 [resolver:install] Installing ome:bio-formats_plugins:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 17.38 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 17.38
#17 17.38 deps-bio-formats-tools:
#17 17.38
#17 17.38 jar-bio-formats-tools:
#17 17.46 [echo] isSnapshot = true
#17 17.59
#17 17.59 init-title:
#17 17.59 [echo] ----------=========== bio-formats-tools ===========----------
#17 17.59
#17 17.59 init-timestamp:
#17 17.59
#17 17.59 init:
#17 17.59
#17 17.59 copy-resources:
#17 17.59 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 17.59
#17 17.59 compile:
#17 17.85 [resolver:resolve] Resolving artifacts
#17 17.85 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 18.16 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 18.16 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 18.16 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 19.42 [javac] 1 warning
#17 19.42
#17 19.42 bio-formats-tools.jar:
#17 19.43 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 19.43 [resolver:install] Using default POM (ome:bio-formats-tools:9.0.0-SNAPSHOT)
#17 19.44 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.pom
#17 19.44 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar
#17 19.44 [resolver:install] Installing ome:bio-formats-tools:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 19.44 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 19.44
#17 19.44 deps-tests:
#17 19.44
#17 19.44 jar-tests:
#17 19.55 [echo] isSnapshot = true
#17 19.72
#17 19.72 init-title:
#17 19.72 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 19.72
#17 19.72 init-timestamp:
#17 19.72
#17 19.72 init:
#17 19.72
#17 19.72 copy-resources:
#17 19.72 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 19.72
#17 19.72 compile:
#17 20.35 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 20.79 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 21.22 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 21.25 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 21.55 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.00 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 22.01 [resolver:resolve] Resolving artifacts
#17 22.02 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 22.13 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 22.49 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 22.49 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 22.77 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 23.18 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 23.18 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 23.49 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 23.49 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 23.49 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 24.40 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 24.40 [javac] int index = unflattenedReader.getCoreIndex();
#17 24.40 [javac] ^
#17 24.40 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 24.40 [javac] reader.setCoreIndex(index);
#17 24.40 [javac] ^
#17 24.70 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 24.70 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 24.70 [javac] ^
#17 24.70 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 24.70 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 24.70 [javac] ^
#17 24.98 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 24.98 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 24.98 [javac] ^
#17 24.98 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 24.98 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 24.98 [javac] ^
#17 24.98 [javac] Note: Some input files use unchecked or unsafe operations.
#17 24.98 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 24.98 [javac] 7 warnings
#17 24.98
#17 24.98 tests.jar:
#17 24.98 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 25.00 [resolver:install] Using default POM (ome:test-suite:9.0.0-SNAPSHOT)
#17 25.00 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.pom
#17 25.00 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.jar
#17 25.00 [resolver:install] Installing ome:test-suite:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 25.00 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 25.00
#17 25.00 jars:
#17 25.00
#17 25.00 copy-jars:
#17 25.00
#17 25.00 deps-formats-api:
#17 25.05 [echo] isSnapshot = true
#17 25.09
#17 25.09 install-pom:
#17 25.20 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/pom-bio-formats-9.0.0-SNAPSHOT.pom
#17 25.21 [resolver:install] Installing ome:pom-bio-formats:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 25.21 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 25.21
#17 25.21 jar-formats-api:
#17 25.29 [echo] isSnapshot = true
#17 25.41
#17 25.41 init-title:
#17 25.41 [echo] ----------=========== formats-api ===========----------
#17 25.41
#17 25.41 init-timestamp:
#17 25.41
#17 25.41 init:
#17 25.41
#17 25.41 copy-resources:
#17 25.41
#17 25.41 compile:
#17 25.58 [resolver:resolve] Resolving artifacts
#17 25.59
#17 25.59 formats-api.jar:
#17 25.60 [resolver:install] Using default POM (ome:formats-api:9.0.0-SNAPSHOT)
#17 25.61 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.pom
#17 25.61 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar
#17 25.61 [resolver:install] Installing ome:formats-api:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 25.61 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 25.61
#17 25.61 deps-turbojpeg:
#17 25.61
#17 25.61 jar-turbojpeg:
#17 25.70 [echo] isSnapshot = true
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#17 25.81 [echo] ----------=========== turbojpeg ===========----------
#17 25.81
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#17 25.82 [resolver:resolve] Resolving artifacts
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#17 25.83 [resolver:install] Using default POM (ome:turbojpeg:9.0.0-SNAPSHOT)
#17 25.83 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.pom
#17 25.83 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar
#17 25.83 [resolver:install] Installing ome:turbojpeg:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 25.84 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 25.84
#17 25.84 deps-formats-bsd:
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#17 25.84 jar-formats-bsd:
#17 25.92 [echo] isSnapshot = true
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#17 26.03 [echo] ----------=========== formats-bsd ===========----------
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#17 26.21 [resolver:resolve] Resolving artifacts
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#17 26.22 formats-bsd.jar:
#17 26.25 [resolver:install] Using default POM (ome:formats-bsd:9.0.0-SNAPSHOT)
#17 26.25 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.pom
#17 26.25 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar
#17 26.25 [resolver:install] Installing ome:formats-bsd:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 26.25 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 26.25
#17 26.25 deps-formats-gpl:
#17 26.25
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#17 26.44
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#17 26.44 [echo] ----------=========== formats-gpl ===========----------
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#17 26.69 [resolver:install] Using default POM (ome:formats-gpl:9.0.0-SNAPSHOT)
#17 26.70 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.pom
#17 26.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar
#17 26.70 [resolver:install] Installing ome:formats-gpl:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 26.70 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 26.70
#17 26.70 deps-bio-formats-plugins:
#17 26.70
#17 26.70 jar-bio-formats-plugins:
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#17 26.89
#17 26.89 init-title:
#17 26.89 [echo] ----------=========== bio-formats_plugins ===========----------
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#17 27.14 [resolver:install] Using default POM (ome:bio-formats_plugins:9.0.0-SNAPSHOT)
#17 27.15 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.pom
#17 27.15 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar
#17 27.15 [resolver:install] Installing ome:bio-formats_plugins:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 27.15 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 27.15
#17 27.15 deps-bio-formats-tools:
#17 27.15
#17 27.15 jar-bio-formats-tools:
#17 27.23 [echo] isSnapshot = true
#17 27.34
#17 27.34 init-title:
#17 27.34 [echo] ----------=========== bio-formats-tools ===========----------
#17 27.34
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#17 27.34
#17 27.34 compile:
#17 27.59 [resolver:resolve] Resolving artifacts
#17 27.60
#17 27.60 bio-formats-tools.jar:
#17 27.60 [resolver:install] Using default POM (ome:bio-formats-tools:9.0.0-SNAPSHOT)
#17 27.61 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.pom
#17 27.61 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar
#17 27.61 [resolver:install] Installing ome:bio-formats-tools:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 27.61 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 27.61
#17 27.61 deps-tests:
#17 27.61
#17 27.61 jar-tests:
#17 27.69 [echo] isSnapshot = true
#17 27.81
#17 27.81 init-title:
#17 27.81 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 27.81
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#17 27.81
#17 27.81 compile:
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#17 28.05
#17 28.05 tests.jar:
#17 28.06 [resolver:install] Using default POM (ome:test-suite:9.0.0-SNAPSHOT)
#17 28.06 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.pom
#17 28.06 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.jar
#17 28.06 [resolver:install] Installing ome:test-suite:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 28.07 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 28.07
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#17 28.07
#17 28.07 tools:
#17 28.07 [echo] ----------=========== bioformats_package ===========----------
#17 28.14 [echo] isSnapshot = true
#17 28.25
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#17 28.25
#17 28.25 bundle:
#17 28.48 [resolver:resolve] Resolving artifacts
#17 28.48 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.51 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.3.0/ome-common-6.3.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.53 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.55 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.55 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.60 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.61 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.65 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.66 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.82 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.86 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.88 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.92 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.93 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.94 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 28.94 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 29.06 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 29.43 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 29.43 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 29.43 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 29.44 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 29.51 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 29.52 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.6.0/ome-xml-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 29.56 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.6.0/specification-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 29.61 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 29.62 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.2.0/ome-codecs-1.2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 29.63 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5/ome-jai-0.1.5.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 29.75 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 29.81 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 29.85 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 30.28 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 30.75 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.4.0/ome-mdbtools-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 30.76 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.4.0/ome-poi-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.86 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 31.21 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.10.0/httpservices-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 31.34 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.14/httpmime-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.34 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-math3/3.6.1/commons-math3-3.6.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.60 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.8/re2j-1.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.61 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.91 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.92 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.93 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.18/slf4j-api-2.0.18.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.94 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.94 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.96 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.26 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.5.37/logback-core-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.34 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.5.37/logback-classic-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.71 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 38.78 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 39.37 [resolver:install] Using default POM (ome:bioformats_package:9.0.0-SNAPSHOT)
#17 39.37 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/bioformats_package-9.0.0-SNAPSHOT.pom
#17 39.37 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/bioformats_package-9.0.0-SNAPSHOT.jar
#17 39.41 [resolver:install] Installing ome:bioformats_package:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 39.41 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 39.42
#17 39.42 BUILD SUCCESSFUL
#17 39.42 Total time: 38 seconds
#17 DONE 40.1s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.2s
#19 exporting to image
#19 exporting layers
#19 exporting layers 8.3s done
#19 writing image sha256:79f9dfe359d76bc9f31238dda77708cc7791453309218379fe10b8dbf6d8c749 done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 8.3s
Finished: SUCCESS
