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Started by upstream project "Trigger" build number 1
originally caused by:
 Started by user devspace
Running as SYSTEM
Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/BIOFORMATS-push
The recommended git tool is: NONE
No credentials specified
Cloning the remote Git repository
Cloning repository https://github.com/ome/bio-formats-build
 > git init /home/omero/workspace/BIOFORMATS-push/bio-formats-build # timeout=10
Fetching upstream changes from https://github.com/ome/bio-formats-build
 > git --version # timeout=10
 > git --version # 'git version 2.47.3'
 > git fetch --tags --force --progress -- https://github.com/ome/bio-formats-build +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/ome/bio-formats-build # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse origin/master^{commit} # timeout=10
Checking out Revision 9e8c9ff560c2beea8ec33cc8a45a192d8a2f8fe0 (origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 9e8c9ff560c2beea8ec33cc8a45a192d8a2f8fe0 # timeout=10
Commit message: "Merge pull request #731 from pwalczysko/fix-build-no-ant"
First time build. Skipping changelog.
 > git remote # timeout=10
 > git submodule init # timeout=10
 > git submodule sync # timeout=10
 > git config --get remote.origin.url # timeout=10
 > git submodule init # timeout=10
 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
 > git config --get submodule.ome-common-java.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-common-java.path # timeout=10
 > git config --get submodule.ome-model.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-model.path # timeout=10
 > git config --get submodule.ome-poi.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-poi.path # timeout=10
 > git config --get submodule.ome-mdbtools.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-mdbtools.path # timeout=10
 > git config --get submodule.ome-jai.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-jai.path # timeout=10
 > git config --get submodule.ome-codecs.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-codecs.path # timeout=10
 > git config --get submodule.ome-metakit.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-metakit.path # timeout=10
 > git config --get submodule.ome-stubs.url # timeout=10
 > git config -f .gitmodules --get submodule.ome-stubs.path # timeout=10
 > git config --get submodule.bioformats.url # timeout=10
 > git config -f .gitmodules --get submodule.bioformats.path # timeout=10
 > git config --get submodule.bio-formats-documentation.url # timeout=10
 > git config -f .gitmodules --get submodule.bio-formats-documentation.path # timeout=10
 > git config --get submodule.bio-formats-examples.url # timeout=10
 > git config -f .gitmodules --get submodule.bio-formats-examples.path # timeout=10
 > git config --get submodule.ZarrReader.url # timeout=10
 > git config -f .gitmodules --get submodule.ZarrReader.path # timeout=10
 > git submodule update --init --recursive --remote ome-common-java # timeout=10
 > git submodule update --init --recursive --remote ome-model # timeout=10
 > git submodule update --init --recursive --remote ome-poi # timeout=10
 > git submodule update --init --recursive --remote ome-mdbtools # timeout=10
 > git submodule update --init --recursive --remote ome-jai # timeout=10
 > git submodule update --init --recursive --remote ome-codecs # timeout=10
 > git submodule update --init --recursive --remote ome-metakit # timeout=10
 > git submodule update --init --recursive --remote ome-stubs # timeout=10
 > git submodule update --init --recursive --remote bioformats # timeout=10
 > git submodule update --init --recursive --remote bio-formats-documentation # timeout=10
 > git submodule update --init --recursive --remote bio-formats-examples # timeout=10
 > git submodule update --init --recursive --remote ZarrReader # timeout=10
[BIOFORMATS-push] $ /bin/bash -xe /tmp/jenkins9414733002526700638.sh
+ python3.11 -mvenv venv
+ source /home/omero/workspace/BIOFORMATS-push/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/BIOFORMATS-push/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/BIOFORMATS-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ pip install -U pip
Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (22.3.1)
Collecting pip
  Downloading pip-25.3-py3-none-any.whl (1.8 MB)
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Installing collected packages: pip
  Attempting uninstall: pip
    Found existing installation: pip 22.3.1
    Uninstalling pip-22.3.1:
      Successfully uninstalled pip-22.3.1
Successfully installed pip-25.3
+ pip install -U scc
Collecting scc
  Downloading scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
  Downloading pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB)
Collecting PyYAML>=5.1 (from scc)
  Downloading pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
Collecting future (from scc)
  Downloading future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
  Downloading ruamel.yaml-0.18.16-py3-none-any.whl.metadata (25 kB)
Collecting ruamel.yaml.jinja2 (from scc)
  Downloading ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
  Downloading six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
Collecting urllib3<2 (from scc)
  Downloading urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
  Downloading yaclifw-0.2.0.tar.gz (13 kB)
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
  Downloading pynacl-1.6.1-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (9.8 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
  Downloading requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Downloading PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB)
Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
  Downloading typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Downloading cryptography-46.0.3-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB)
Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Downloading cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB)
Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
  Downloading pycparser-2.23-py3-none-any.whl.metadata (993 bytes)
Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Downloading charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Downloading idna-3.11-py3-none-any.whl.metadata (8.4 kB)
Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
  Downloading certifi-2025.11.12-py3-none-any.whl.metadata (2.5 kB)
Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
  Downloading ruamel_yaml_clib-0.2.15-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.5 kB)
Downloading scc-0.20.0-py3-none-any.whl (48 kB)
Downloading urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
Downloading pygithub-2.8.1-py3-none-any.whl (432 kB)
Downloading PyJWT-2.10.1-py3-none-any.whl (22 kB)
Downloading cryptography-46.0.3-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB)
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Downloading cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB)
Downloading pynacl-1.6.1-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB)
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Downloading pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
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Downloading requests-2.32.5-py3-none-any.whl (64 kB)
Downloading charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
Downloading idna-3.11-py3-none-any.whl (71 kB)
Downloading certifi-2025.11.12-py3-none-any.whl (159 kB)
Downloading typing_extensions-4.15.0-py3-none-any.whl (44 kB)
Downloading future-1.0.0-py3-none-any.whl (491 kB)
Downloading pycparser-2.23-py3-none-any.whl (118 kB)
Downloading ruamel.yaml-0.18.16-py3-none-any.whl (119 kB)
Downloading ruamel_yaml_clib-0.2.15-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (777 kB)
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Downloading ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Downloading six-1.17.0-py2.py3-none-any.whl (11 kB)
Building wheels for collected packages: yaclifw
  Building wheel for yaclifw (pyproject.toml): started
  Building wheel for yaclifw (pyproject.toml): finished with status 'done'
  Created wheel for yaclifw: filename=yaclifw-0.2.0-py3-none-any.whl size=14689 sha256=12a7701da8b44db6be44bab114589d0cd51ad142987d706db12800f0c1940af5
  Stored in directory: /home/omero/.cache/pip/wheels/65/14/90/3ee93d92964646dc1f6990630191b41765be2582811bce72ac
Successfully built yaclifw
Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml, requests, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc

Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2025.11.12 cffi-2.0.0 charset_normalizer-3.4.4 cryptography-46.0.3 future-1.0.0 idna-3.11 pycparser-2.23 pyjwt-2.10.1 pynacl-1.6.1 requests-2.32.5 ruamel.yaml-0.18.16 ruamel.yaml.clib-0.2.15 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0
+ PATH=/home/omero/workspace/BIOFORMATS-push/bio-formats-build/scripts:/home/omero/workspace/BIOFORMATS-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
+ MERGE_OPTIONS='--no-ask --reset --comment -S success-only'
+ cd bio-formats-build
+ echo 'Merge base repository (no submodule updates)'
Merge base repository (no submodule updates)
+ scc merge --no-ask --reset --comment -S success-only --shallow master
2025-12-17 16:31:05,249 [   scc.merge] INFO  Merging Pull Request(s) based on master
2025-12-17 16:31:05,249 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2025-12-17 16:31:05,249 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2025-12-17 16:31:05,249 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2025-12-17 16:31:05,249 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2025-12-17 16:31:05,249 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
2025-12-17 16:31:05,614 [   scc.merge] INFO  Repository: ome/bio-formats-build
2025-12-17 16:31:05,614 [   scc.merge] INFO  Already up to date.
2025-12-17 16:31:05,614 [   scc.merge] INFO  
2025-12-17 16:31:05,614 [   scc.merge] INFO  
+ git submodule sync
Synchronizing submodule url for 'ZarrReader'
Synchronizing submodule url for 'bio-formats-documentation'
Synchronizing submodule url for 'bio-formats-examples'
Synchronizing submodule url for 'bioformats'
Synchronizing submodule url for 'ome-codecs'
Synchronizing submodule url for 'ome-common-java'
Synchronizing submodule url for 'ome-jai'
Synchronizing submodule url for 'ome-mdbtools'
Synchronizing submodule url for 'ome-metakit'
Synchronizing submodule url for 'ome-model'
Synchronizing submodule url for 'ome-poi'
Synchronizing submodule url for 'ome-stubs'
+ git submodule update --remote --recursive
Submodule path 'ZarrReader': checked out '5f3faa45fef73473bce6e4fc732a9cccc05c105d'
Submodule path 'bio-formats-documentation': checked out '56211d70211301a587788e031691f5d8495761bc'
Submodule path 'bio-formats-examples': checked out '1e4408bdccf1da4506d2b060010d134094d86dde'
Submodule path 'bioformats': checked out '3fa05af5a63128aec8ff5c1cc57ac6cf7def1e67'
Submodule path 'ome-codecs': checked out '1f655e61d0a7e02217a1bbff46dc54f205c8ea37'
Submodule path 'ome-common-java': checked out 'd22ba6097e15edbfe2389fdcc093fd8efecc1523'
Submodule path 'ome-jai': checked out '9f1b4efff4c048da02bc6634ed3325cb38b41f0f'
Submodule path 'ome-mdbtools': checked out '9c3c3e268e1e76dd602daa88788403073b532e24'
Submodule path 'ome-metakit': checked out '55abb777df3ebcd3d201ab0c6621b331a2731c37'
Submodule path 'ome-model': checked out '3120dc4f0bf13c1ffaba04f67f738ee0d5e445aa'
Submodule path 'ome-poi': checked out 'd727828f8f30ce7a97d13b58dba97580e75bab5d'
Submodule path 'ome-stubs': checked out '6a87342b85e0539247e64f53045ea776c90a269b'
+ echo 'Merge all submodules using repository configuration:'
Merge all submodules using repository configuration:
+ cat scripts/repositories.yml
base-branch: master

submodules:
  ome-common-java:
    base-branch: master

  bioformats:
    base-branch: develop
    
  bio-formats-documentation:
    base-branch: master

  bio-formats-examples:
    base-branch: master
    
  ome-codecs:
    base-branch: master
    
  ome-common-java:
    base-branch: master
    
  ome-jai:
    base-branch: master
    
  ome-mdbtools:
    base-branch: master
    
  ome-metakit:
    base-branch: master
    
  ome-model:
    base-branch: master
    
  ome-poi:
    base-branch: master
    
  ome-stubs:
    base-branch: master
    
  ZarrReader:
    base-branch: main
++ pwd
+ scc merge --repository-config=/home/omero/workspace/BIOFORMATS-push/bio-formats-build/scripts/repositories.yml --no-ask --reset --comment -S success-only --update-gitmodules --push merge_ci master
Following Github server redirection from /repos/openmicroscopy/bioformats to /repositories/2510503
2025-12-17 16:31:20,577 [github.Reque] INFO  Following Github server redirection from /repos/openmicroscopy/bioformats to /repositories/2510503
2025-12-17 16:31:42,987 [   scc.merge] INFO  Merging Pull Request(s) based on master
2025-12-17 16:31:42,988 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2025-12-17 16:31:42,988 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2025-12-17 16:31:42,988 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2025-12-17 16:31:42,988 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2025-12-17 16:31:42,988 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
2025-12-17 16:31:43,242 [     scc.git] INFO  Overriding base-branch from master to main
2025-12-17 16:32:07,424 [     scc.git] INFO  Overriding base-branch from master to develop
2025-12-17 16:34:01,921 [   scc.merge] INFO  Repository: ome/bio-formats-build
2025-12-17 16:34:01,921 [   scc.merge] INFO  Already up to date.
2025-12-17 16:34:01,921 [   scc.merge] INFO  
2025-12-17 16:34:01,921 [   scc.merge] INFO  
2025-12-17 16:34:01,921 [   scc.merge] INFO  Repository: ome/ZarrReader
2025-12-17 16:34:01,921 [   scc.merge] INFO  Excluded PRs:
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 113 dominikl 'Zarr v3' (stage: draft)
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
2025-12-17 16:34:01,921 [   scc.merge] INFO  Updating 31d6d95..5f3faa4
2025-12-17 16:34:01,921 [   scc.merge] INFO  Previously merged:
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 111 Tom-TBT 'Fixed typo in README env var name to set'
2025-12-17 16:34:01,921 [   scc.merge] INFO  
2025-12-17 16:34:01,921 [   scc.merge] INFO  
2025-12-17 16:34:01,921 [   scc.merge] INFO  Repository: ome/bio-formats-documentation
2025-12-17 16:34:01,921 [   scc.merge] INFO  Updating db99c10d..56211d70
2025-12-17 16:34:01,921 [   scc.merge] INFO  Previously merged:
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 450 melissalinkert 'Update a couple of outdated lines in about page'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 446 sbesson 'Add labelPlanes to the list of flags for fake images'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 445 melissalinkert 'Update ome-common to 6.1.1'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 444 dependabot[bot] 'Bump ch.qos.logback:logback-core from 1.3.15 to 1.3.16'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 442 will-moore 'Link to Receipt of Sample Data'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 440 dominikl 'Exclude https://www.mail-archive.com/tiff from linkcheck'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 441 melissalinkert 'Update external readers page based upon feedback'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 439 melissalinkert 'Start describing external reader usage'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 438 will-moore 'Fix netcdf-java links'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 437 pwalczysko 'Nis elements and cibc-datasets'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 436 pwalczysko 'Replace broken link in lemkesoft with working one'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 435 pwalczysko 'Replace nikoninstruments link with redirect'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 434 sbesson 'Add format page for Zeiss XRM format'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 432 sbesson 'Add release notes for upcoming Bio-Formats 8.3.0 release'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 433 sbesson 'Review list of dependencies for Bio-Formats 8.3.0'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 431 pwalczysko 'Fix limited javadoc syntax'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 430 pwalczysko 'Fix sourceforge'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 426 jburel 'Update EMAN2 URL'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 427 jburel 'Checking linkcheck config'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 422 melissalinkert 'Add page for JDCE'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 425 melissalinkert 'Release notes for 8.2.0'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 423 pwalczysko 'Replace link to Vaa3D for a relevant one and fix peng lab link'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 409 melissalinkert 'Link to Farsight GitHub instead of wiki'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 418 sbesson 'Update MATLAB documentation for colormap return value'
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 421 dominikl 'Exclude merckmillipore.com from link check'
2025-12-17 16:34:01,921 [   scc.merge] INFO  
2025-12-17 16:34:01,921 [   scc.merge] INFO  
2025-12-17 16:34:01,921 [   scc.merge] INFO  Repository: ome/bio-formats-examples
2025-12-17 16:34:01,921 [   scc.merge] INFO  Updating 3aa7013..1e4408b
2025-12-17 16:34:01,921 [   scc.merge] INFO  Previously merged:
2025-12-17 16:34:01,921 [   scc.merge] INFO    - PR 136 melissalinkert 'Add precompressed tile writing example'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 137 melissalinkert 'Fix output path for in-memory writing test'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 135 melissalinkert 'Bump logback version to 1.3.16'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 134 sbesson 'POM: cleanup outdated metadata'
2025-12-17 16:34:01,922 [   scc.merge] INFO  
2025-12-17 16:34:01,922 [   scc.merge] INFO  
2025-12-17 16:34:01,922 [   scc.merge] INFO  Repository: openmicroscopy/bioformats
2025-12-17 16:34:01,922 [   scc.merge] INFO  Excluded PRs:
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4260 melissalinkert 'UpgradeChecker: more thorough check of upgrade check result and HTTP response code' (stage: draft)
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4254 melissalinkert 'Memoizer: ask any ImageReader instances to remove all but the current reader' (stage: draft)
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
2025-12-17 16:34:01,922 [   scc.merge] INFO  Updating 3f70394503..3fa05af5a6
2025-12-17 16:34:01,922 [   scc.merge] INFO  Previously merged:
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4371 melissalinkert 'Fix and refactor ModuloC handling in ImageJ plugins'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4391 melissalinkert 'Add lens IDs 18113 and 18114'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4382 melissalinkert 'bfconvert: make sure plane indexes are correct when writing single Z/C/T'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4387 melissalinkert 'Parse .vsi timestamps similar to Z positions'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4388 melissalinkert 'Update to CodeQL v4'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4385 melissalinkert 'Update ome-model, ome-codecs, ome-poi, ome-metakit to latest versions'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4384 melissalinkert 'Update ome-common to 6.1.1'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4383 melissalinkert 'Bump logback version to 1.3.16'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4381 melissalinkert 'ND2: preserve pixel type when setting dimensions'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4378 melissalinkert 'Unify emission wavelength handling in NDPI and NDPIS readers'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4375 melissalinkert 'FV1000: fix some small ROI parsing issues'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4374 melissalinkert 'CellH5: reduce memory usage'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4370 melissalinkert 'ND2: don't reset pixel type when the bits per pixel doesn't make sense'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4368 odinsbane 'Put the scanline padding to 4 bytes on the non-compressed reading.'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4360 melissalinkert 'Fix several OIR issues'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4365 melissalinkert 'Fix array sizes in Octave'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4358 melissalinkert 'OMEXMLReader: escape values when re-assembling OME-XML'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4363 melissalinkert 'Metamorph: read plane positions from multiple files'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4361 melissalinkert 'Remove unused detector linking logic'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4357 melissalinkert 'Add reader for TissueFAXS (.tfcyto) data'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4359 sbesson 'Report workflow: delay the first execution by 1 h'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4355 zacsimile 'Fix DCIMG indexing over multiple files'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4350 sbesson 'Build report workflow: fix failure when no tests failed'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4339 melissalinkert 'Fake: add `labelPlanes` option to add human-readable labels to planes'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4353 melissalinkert 'Fix tag encoding for LEO files'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4348 sbesson 'FakeReader: link instrument to all images'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4349 sbesson 'Add unit tests for ChannelMerger and ChannelSeparator'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4351 sbesson 'GH release workflow: add flag to automatically generate notes'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4345 melissalinkert 'ChannelMerger: correct number of Channels in MetadataStore'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4347 melissalinkert 'Fix Metamorph .nd encoding'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4341 melissalinkert 'Don't use position metadata when distinguishing between T and series'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4307 jburel 'Build report'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4343 sbesson 'Upgrade from commons-lang:commons-lang to org.apache.commons:commons-lang3'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4332 melissalinkert 'ND2: add TextInfoItems to original metadata before parsing'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4322 melissalinkert 'Metamorph: don't reset dimensions if the well count and series count match'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4316 sbesson 'xmlvalid: consume OMEXMLServiceImpl.SCHEMA_CLASSPATH_READER'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4338 sbesson 'org.openmicroscopy component updates'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4294 nicolapapp 'Miscellaneous fixes to SlideBook7Reader.java'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4336 sbesson 'TecanReader: use try-with-resources when opening SQL connection'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4337 melissalinkert 'Metamorph TIFF: throw more explicit exceptions if parsing invalid TIFF'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4331 melissalinkert 'Zeiss CZI: fix a few ID/reference issues'
2025-12-17 16:34:01,922 [   scc.merge] INFO    - PR 4319 melissalinkert 'Zeiss CZI: use millisecond units for exposure times attached to channels'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4306 melissalinkert 'CZI: LightSource fixes, set LightSourceSettings.Attenuation'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4328 melissalinkert 'Ventana .bif: fix LEFT overlap and add Z stack support'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4317 melissalinkert 'Fix OME-TIFF optimal tile size if an IFD is not linked to an Image'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4323 melissalinkert 'showinf: configure logging for `-omexml-only` after all arguments parsed'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4327 melissalinkert 'Check modulo values in repository tests'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4326 sbesson 'LiFlimReader: cast integers to double for division accuracy'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4314 melissalinkert 'Operetta/Harmony: fix case where index XML is in the parent of the image directory'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4309 odinsbane 'ND2Reader Changed the padding for a specific condition to pad to 4 byte boundaries.'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4308 melissalinkert 'Add support for Zeiss XRM (.txm/.txrm) data'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4311 sbesson 'Review declaration of Maven Scijava as a repository'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4284 ptahmose 'fix for garbled images with CZIs'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4289 melissalinkert 'ImageJ export plugin: add some checks to prevent file appending'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4304 melissalinkert 'Leica LIF: map offsets to images by memory block ID'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4305 melissalinkert 'Add reader for Molecular Devices JDCE'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4293 sbesson 'Remove unnecessary Python script for bumping component versions'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4302 sbesson 'Olympus ScanR: check getCurrentFile is the first value of getUsedFiles'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4299 foxmja 'Added Multi-Page TIFF Support for Prairie Technologies TIFFs'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4298 zacsimile 'Add frameFooterBytes to image stride for DCIMG >=0x1000000'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4303 melissalinkert 'Fix Unidata repository URLs'
2025-12-17 16:34:01,923 [   scc.merge] INFO  
2025-12-17 16:34:01,923 [   scc.merge] INFO  Merged PRs:
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4243 melissalinkert 'Update IExtraMetadataWriter.setExtraMetadata(...) to accept an Object'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4354 melissalinkert 'DICOM: use `Study Time` tag as an extra check on whether files should be grouped'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4362 ngladitz 'OBF: Support complex data stacks'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4373 melissalinkert 'CZI: ignore plate information if not activated'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4379 melissalinkert 'DICOM: fix width of values with DS VR'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4380 melissalinkert 'Calculate resolution counts when generating pyramids with `bfconvert`'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 4392 melissalinkert 'A few more ND2 dimension fixes'
2025-12-17 16:34:01,923 [   scc.merge] INFO  
2025-12-17 16:34:01,923 [   scc.merge] INFO  Repository: ome/ome-codecs
2025-12-17 16:34:01,923 [   scc.merge] INFO  Updating fab1a01..1f655e6
2025-12-17 16:34:01,923 [   scc.merge] INFO  Previously merged:
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 44 sbesson 'GitHub actions: add step to auto-create GitHub release on tags'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 43 melissalinkert 'Update to ome-common 6.1.1'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 42 sbesson 'Update publication build system to use Central Portal'
2025-12-17 16:34:01,923 [   scc.merge] INFO  
2025-12-17 16:34:01,923 [   scc.merge] INFO  
2025-12-17 16:34:01,923 [   scc.merge] INFO  Repository: ome/ome-common-java
2025-12-17 16:34:01,923 [   scc.merge] INFO  Excluded PRs:
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 109 dominikl 'Remove jackson dependency' (stage: draft)
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 108 dominikl 'Remove S3 handling' (stage: draft)
2025-12-17 16:34:01,923 [   scc.merge] INFO  Updating 2cb0b7b..d22ba60
2025-12-17 16:34:01,923 [   scc.merge] INFO  Previously merged:
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 107 sbesson 'Add GitHub release creation to Maven workflow'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 106 melissalinkert 'Bump logback-classic to 1.3.16'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 100 melissalinkert 'Add DataTools.readFile signature that accepts an encoding name'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 101 sbesson 'Update deployment infrastructure to publish to Central Portal'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 99 melissalinkert 'Fix type of skipped bytes counter'
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 98 sbesson 'Add CodeQL workflow running on push and pull request events'
2025-12-17 16:34:01,923 [   scc.merge] INFO  
2025-12-17 16:34:01,923 [   scc.merge] INFO  Merged PRs:
2025-12-17 16:34:01,923 [   scc.merge] INFO    - PR 110 sbesson 'Deprecate the S3 interfaces, implementations and services'
2025-12-17 16:34:01,923 [   scc.merge] INFO  
2025-12-17 16:34:01,924 [   scc.merge] INFO  Repository: ome/ome-jai
2025-12-17 16:34:01,924 [   scc.merge] INFO  Updating e70c2ab..9f1b4ef
2025-12-17 16:34:01,924 [   scc.merge] INFO  Previously merged:
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 8 sbesson 'Update publication build system to use Central Portal '
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 9 sbesson 'Replace usage of sun.security.action by PrivilegedAction'
2025-12-17 16:34:01,924 [   scc.merge] INFO  
2025-12-17 16:34:01,924 [   scc.merge] INFO  
2025-12-17 16:34:01,924 [   scc.merge] INFO  Repository: ome/ome-mdbtools
2025-12-17 16:34:01,924 [   scc.merge] INFO  Updating 9193930..9c3c3e2
2025-12-17 16:34:01,924 [   scc.merge] INFO  Previously merged:
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 14 sbesson 'Update publication system to use Central Portal'
2025-12-17 16:34:01,924 [   scc.merge] INFO  
2025-12-17 16:34:01,924 [   scc.merge] INFO  
2025-12-17 16:34:01,924 [   scc.merge] INFO  Repository: ome/ome-metakit
2025-12-17 16:34:01,924 [   scc.merge] INFO  Updating 1ba6cf1..55abb77
2025-12-17 16:34:01,924 [   scc.merge] INFO  Previously merged:
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 31 sbesson 'GitHub actions: add step to auto-create GitHub release on tags'
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 30 melissalinkert 'Update ome-common to 6.1.1'
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 29 dependabot[bot] 'Bump ch.qos.logback:logback-core from 1.3.15 to 1.3.16'
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 27 sbesson 'Update publication build system to use Central Portal'
2025-12-17 16:34:01,924 [   scc.merge] INFO  
2025-12-17 16:34:01,924 [   scc.merge] INFO  
2025-12-17 16:34:01,924 [   scc.merge] INFO  Repository: ome/ome-model
2025-12-17 16:34:01,924 [   scc.merge] INFO  Updating 3d70a1f9..3120dc4f
2025-12-17 16:34:01,924 [   scc.merge] INFO  Previously merged:
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 226 rleigh-codelibre 'OMEXMLMetadata: Correct indexed access to annotation references'
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 225 melissalinkert 'Update ome-common to 6.1.1'
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 223 melissalinkert 'Bump logback-classic to 1.3.16'
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 224 sbesson 'Add release step to GitHub Maven workflow'
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 222 sbesson 'Update publication build system to use Central Portal'
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 221 melissalinkert 'Replace mailing lists and QA with forum.image.sc and Zenodo'
2025-12-17 16:34:01,924 [   scc.merge] INFO  
2025-12-17 16:34:01,924 [   scc.merge] INFO  
2025-12-17 16:34:01,924 [   scc.merge] INFO  Repository: ome/ome-poi
2025-12-17 16:34:01,924 [   scc.merge] INFO  Updating da3a5f3..d727828
2025-12-17 16:34:01,924 [   scc.merge] INFO  Previously merged:
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 21 sbesson 'GitHub actions: add step to auto-create GitHub release on tags'
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 20 melissalinkert 'Update to ome-common 6.1.1'
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 19 sbesson 'Update publication system to use Central Portal'
2025-12-17 16:34:01,924 [   scc.merge] INFO  
2025-12-17 16:34:01,924 [   scc.merge] INFO  
2025-12-17 16:34:01,924 [   scc.merge] INFO  Repository: ome/ome-stubs
2025-12-17 16:34:01,924 [   scc.merge] INFO  Updating 1559997..6a87342
2025-12-17 16:34:01,924 [   scc.merge] INFO  Previously merged:
2025-12-17 16:34:01,924 [   scc.merge] INFO    - PR 12 sbesson 'Update publication build system to use Central Portal'
2025-12-17 16:34:01,924 [   scc.merge] INFO  
2025-12-17 16:34:01,924 [   scc.merge] INFO  
2025-12-17 16:34:24,491 [   scc.merge] INFO  Merged branch pushed to https://github.com/snoopycrimecop/bio-formats-build/tree/merge_ci
+ echo 'Update maven component versions'
Update maven component versions
+ update-versions
OMEZarrReader=0.6.1-SNAPSHOT bio-formats-documentation=8.4.0-SNAPSHOT bio-formats-examples=8.4.0-SNAPSHOT bio-formats_plugins=8.4.0-SNAPSHOT bio-formats-tools=8.4.0-SNAPSHOT bioformats_package=8.4.0-SNAPSHOT turbojpeg=8.4.0-SNAPSHOT formats-api=8.4.0-SNAPSHOT formats-bsd=8.4.0-SNAPSHOT formats-gpl=8.4.0-SNAPSHOT test-suite=8.4.0-SNAPSHOT pom-bio-formats=8.4.0-SNAPSHOT bioformats=8.4.0-SNAPSHOT ome-codecs=1.1.3-SNAPSHOT ome-common=6.1.2-SNAPSHOT ome-jai=0.1.6-SNAPSHOT ome-mdbtools=5.3.5-SNAPSHOT metakit=5.3.10-SNAPSHOT ome-xml=6.5.2-SNAPSHOT specification=6.5.2-SNAPSHOT ome-model=6.5.2-SNAPSHOT ome-poi=5.3.11-SNAPSHOT mipav-stubs=6.0.4-SNAPSHOT ome-stubs=6.0.4-SNAPSHOT
+ echo 'Commit all component version changes'
Commit all component version changes
+ git submodule foreach 'git add -u'
Entering 'ZarrReader'
Entering 'bio-formats-documentation'
Entering 'bio-formats-examples'
Entering 'bioformats'
Entering 'ome-codecs'
Entering 'ome-common-java'
Entering 'ome-jai'
Entering 'ome-mdbtools'
Entering 'ome-metakit'
Entering 'ome-model'
Entering 'ome-poi'
Entering 'ome-stubs'
+ git submodule foreach 'git commit -m '\''Update component versions'\'' || true'
Entering 'ZarrReader'
HEAD detached from 31d6d95
nothing to commit, working tree clean
Entering 'bio-formats-documentation'
[detached HEAD 0b727a34] Update component versions
 1 file changed, 7 insertions(+), 7 deletions(-)
Entering 'bio-formats-examples'
[detached HEAD 3994c03] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'bioformats'
[detached HEAD d2372c37e2] Update component versions
 1 file changed, 9 insertions(+), 9 deletions(-)
Entering 'ome-codecs'
[detached HEAD 2455ff4] Update component versions
 1 file changed, 2 insertions(+), 2 deletions(-)
Entering 'ome-common-java'
HEAD detached from 2cb0b7b
nothing to commit, working tree clean
Entering 'ome-jai'
HEAD detached from e70c2ab
nothing to commit, working tree clean
Entering 'ome-mdbtools'
HEAD detached from 9193930
nothing to commit, working tree clean
Entering 'ome-metakit'
[detached HEAD d1821f9] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'ome-model'
[detached HEAD a6b52f45] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'ome-poi'
[detached HEAD fda155b] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'ome-stubs'
HEAD detached from 1559997
nothing to commit, working tree clean
+ echo 'Push all branches'
Push all branches
++ git config github.user
+ user=snoopycrimecop
+ git submodule foreach 'git push -f git@github.com:snoopycrimecop/${path}.git HEAD:merge_ci'
Entering 'ZarrReader'
Everything up-to-date
Entering 'bio-formats-documentation'
To github.com:snoopycrimecop/bio-formats-documentation.git
   3f218bf6..0b727a34  HEAD -> merge_ci
Entering 'bio-formats-examples'
To github.com:snoopycrimecop/bio-formats-examples.git
   12d86ae..3994c03  HEAD -> merge_ci
Entering 'bioformats'
To github.com:snoopycrimecop/bioformats.git
   1c9eb4623e..d2372c37e2  HEAD -> merge_ci
Entering 'ome-codecs'
To github.com:snoopycrimecop/ome-codecs.git
   1e81420..2455ff4  HEAD -> merge_ci
Entering 'ome-common-java'
Everything up-to-date
Entering 'ome-jai'
Everything up-to-date
Entering 'ome-mdbtools'
Everything up-to-date
Entering 'ome-metakit'
To github.com:snoopycrimecop/ome-metakit.git
   0e26bb7..d1821f9  HEAD -> merge_ci
Entering 'ome-model'
To github.com:snoopycrimecop/ome-model.git
   e97d46bb..a6b52f45  HEAD -> merge_ci
Entering 'ome-poi'
To github.com:snoopycrimecop/ome-poi.git
   35904fd..fda155b  HEAD -> merge_ci
Entering 'ome-stubs'
Everything up-to-date
+ echo 'Commit all component version changes'
Commit all component version changes
+ git add -u
+ git commit -m 'Update component versions'
[detached HEAD 125f965] Update component versions
 7 files changed, 7 insertions(+), 7 deletions(-)
+ git push -f git@github.com:snoopycrimecop/bio-formats-build.git HEAD:merge_ci
To github.com:snoopycrimecop/bio-formats-build.git
   e7e5030..125f965  HEAD -> merge_ci
[BIOFORMATS-push] $ /bin/bash -xe /tmp/jenkins4272389614322890098.sh
+ mkdir -p /home/omero/workspace/BIOFORMATS-push/target
+ cd /home/omero/workspace/BIOFORMATS-push/target
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ tar -zxf -
+ export PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/BIOFORMATS-push/target/build-infra-master/
+ PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/BIOFORMATS-push/target/build-infra-master/
+ cd /home/omero/workspace/BIOFORMATS-push/bio-formats-build
+ foreach-get-version
+ foreach-get-version-as-property
Archiving artifacts
Finished: SUCCESS