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Started by user devspace Running as SYSTEM Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/BIOFORMATS-push The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /home/omero/workspace/BIOFORMATS-push/bio-formats-build/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/bio-formats-build # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -ffdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 Fetching upstream changes from https://github.com/ome/bio-formats-build > git --version # timeout=10 > git --version # 'git version 2.43.5' > git fetch --tags --force --progress -- https://github.com/ome/bio-formats-build +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse origin/master^{commit} # timeout=10 Checking out Revision 9f5540d997a1c61b4bb2b6fec47750b0a0bcf2bf (origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 9f5540d997a1c61b4bb2b6fec47750b0a0bcf2bf # timeout=10 Commit message: "Merge pull request #716 from ome/dependabot/submodules/bio-formats-documentation-4a03a2e" > git rev-list --no-walk 9f5540d997a1c61b4bb2b6fec47750b0a0bcf2bf # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.ome-common-java.url # timeout=10 > git config -f .gitmodules --get submodule.ome-common-java.path # timeout=10 > git config --get submodule.ome-model.url # timeout=10 > git config -f .gitmodules --get submodule.ome-model.path # timeout=10 > git config --get submodule.ome-poi.url # timeout=10 > git config -f .gitmodules --get submodule.ome-poi.path # timeout=10 > git config --get submodule.ome-mdbtools.url # timeout=10 > git config -f .gitmodules --get submodule.ome-mdbtools.path # timeout=10 > git config --get submodule.ome-jai.url # timeout=10 > git config -f .gitmodules --get submodule.ome-jai.path # timeout=10 > git config --get submodule.ome-codecs.url # timeout=10 > git config -f .gitmodules --get submodule.ome-codecs.path # timeout=10 > git config --get submodule.ome-metakit.url # timeout=10 > git config -f .gitmodules --get submodule.ome-metakit.path # timeout=10 > git config --get submodule.ome-stubs.url # timeout=10 > git config -f .gitmodules --get submodule.ome-stubs.path # timeout=10 > git config --get submodule.bioformats.url # timeout=10 > git config -f .gitmodules --get submodule.bioformats.path # timeout=10 > git config --get submodule.bio-formats-documentation.url # timeout=10 > git config -f .gitmodules --get submodule.bio-formats-documentation.path # timeout=10 > git config --get submodule.bio-formats-examples.url # timeout=10 > git config -f .gitmodules --get submodule.bio-formats-examples.path # timeout=10 > git config --get submodule.ZarrReader.url # timeout=10 > git config -f .gitmodules --get submodule.ZarrReader.path # timeout=10 > git submodule update --init --recursive --remote ome-common-java # timeout=10 > git submodule update --init --recursive --remote ome-model # timeout=10 > git submodule update --init --recursive --remote ome-poi # timeout=10 > git submodule update --init --recursive --remote ome-mdbtools # timeout=10 > git submodule update --init --recursive --remote ome-jai # timeout=10 > git submodule update --init --recursive --remote ome-codecs # timeout=10 > git submodule update --init --recursive --remote ome-metakit # timeout=10 > git submodule update --init --recursive --remote ome-stubs # timeout=10 > git submodule update --init --recursive --remote bioformats # timeout=10 > git submodule update --init --recursive --remote bio-formats-documentation # timeout=10 > git submodule update --init --recursive --remote bio-formats-examples # timeout=10 > git submodule update --init --recursive --remote ZarrReader # timeout=10 [BIOFORMATS-push] $ /bin/bash -xe /tmp/jenkins11127016287686072158.sh + python3.11 -mvenv venv + source /home/omero/workspace/BIOFORMATS-push/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/BIOFORMATS-push/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/BIOFORMATS-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + pip install -U pip Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.0.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.0.1 WARNING: There was an error checking the latest version of pip. + pip install -U scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached PyGithub-2.6.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.10-py3-none-any.whl.metadata (23 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.13.0-py3-none-any.whl.metadata (3.0 kB) Collecting Deprecated (from PyGithub>=1.54->scc) Using cached Deprecated-1.2.18-py2.py3-none-any.whl.metadata (5.7 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.7 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-44.0.2-cp39-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc) Using cached cffi-1.17.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB) Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB) Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc) Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB) Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached PyGithub-2.6.1-py3-none-any.whl (410 kB) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached ruamel.yaml-0.18.10-py3-none-any.whl (117 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) Using cached requests-2.32.3-py3-none-any.whl (64 kB) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (739 kB) Using cached typing_extensions-4.13.0-py3-none-any.whl (45 kB) Using cached Deprecated-1.2.18-py2.py3-none-any.whl (10.0 kB) Using cached certifi-2025.1.31-py3-none-any.whl (166 kB) Using cached cffi-1.17.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (467 kB) Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB) Using cached cryptography-44.0.2-cp39-abi3-manylinux_2_34_x86_64.whl (4.2 MB) Using cached idna-3.10-py3-none-any.whl (70 kB) Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (83 kB) Using cached pycparser-2.22-py3-none-any.whl (117 kB) Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed Deprecated-1.2.18 PyGithub-2.6.1 PyYAML-6.0.2 certifi-2025.1.31 cffi-1.17.1 charset-normalizer-3.4.1 cryptography-44.0.2 future-1.0.0 idna-3.10 pycparser-2.22 pyjwt-2.10.1 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.10 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.13.0 urllib3-1.26.20 wrapt-1.17.2 yaclifw-0.2.0 + PATH=/home/omero/workspace/BIOFORMATS-push/bio-formats-build/scripts:/home/omero/workspace/BIOFORMATS-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + MERGE_OPTIONS='--no-ask --reset --comment -S success-only' + cd bio-formats-build + echo 'Merge base repository (no submodule updates)' Merge base repository (no submodule updates) + scc merge --no-ask --reset --comment -S success-only --shallow master 2025-03-28 10:34:57,472 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-03-28 10:34:57,472 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-03-28 10:34:57,473 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-03-28 10:34:57,473 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-03-28 10:34:57,473 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-03-28 10:34:57,473 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2025-03-28 10:35:15,935 [ scc.merge] INFO Repository: ome/bio-formats-build 2025-03-28 10:35:15,935 [ scc.merge] INFO Excluded PRs: 2025-03-28 10:35:15,935 [ scc.merge] INFO - PR 723 dependabot[bot] 'Bump ome-common-java from `2cb0b7b` to `ee7fb4c`' (status: failure) 2025-03-28 10:35:15,935 [ scc.merge] INFO Already up to date. 2025-03-28 10:35:15,935 [ scc.merge] INFO 2025-03-28 10:35:15,935 [ scc.merge] INFO Merged PRs: 2025-03-28 10:35:15,935 [ scc.merge] INFO - PR 721 dependabot[bot] 'Bump ome-model from `accccf2` to `3d70a1f`' 2025-03-28 10:35:15,935 [ scc.merge] INFO - PR 722 dependabot[bot] 'Bump bio-formats-examples from `6fa5e68` to `3aa7013`' 2025-03-28 10:35:15,935 [ scc.merge] INFO - PR 726 dependabot[bot] 'Bump bioformats from `f1654bc` to `c997de1`' 2025-03-28 10:35:15,935 [ scc.merge] INFO - PR 728 dependabot[bot] 'Bump bio-formats-documentation from `4a03a2e` to `db99c10`' 2025-03-28 10:35:15,935 [ scc.merge] INFO + git submodule sync Synchronizing submodule url for 'ZarrReader' Synchronizing submodule url for 'bio-formats-documentation' Synchronizing submodule url for 'bio-formats-examples' Synchronizing submodule url for 'bioformats' Synchronizing submodule url for 'ome-codecs' Synchronizing submodule url for 'ome-common-java' Synchronizing submodule url for 'ome-jai' Synchronizing submodule url for 'ome-mdbtools' Synchronizing submodule url for 'ome-metakit' Synchronizing submodule url for 'ome-model' Synchronizing submodule url for 'ome-poi' Synchronizing submodule url for 'ome-stubs' + git submodule update --remote --recursive Submodule path 'ome-common-java': checked out 'ee7fb4c55d925978cf22e1cad42f7cd2c88e1927' + echo 'Merge all submodules using repository configuration:' Merge all submodules using repository configuration: + cat scripts/repositories.yml base-branch: master submodules: ome-common-java: base-branch: master bioformats: base-branch: develop bio-formats-documentation: base-branch: master bio-formats-examples: base-branch: master ome-codecs: base-branch: master ome-common-java: base-branch: master ome-jai: base-branch: master ome-mdbtools: base-branch: master ome-metakit: base-branch: master ome-model: base-branch: master ome-poi: base-branch: master ome-stubs: base-branch: master ZarrReader: base-branch: main ++ pwd + scc merge --repository-config=/home/omero/workspace/BIOFORMATS-push/bio-formats-build/scripts/repositories.yml --no-ask --reset --comment -S success-only --update-gitmodules --push merge_ci master Following Github server redirection from /repos/openmicroscopy/bioformats to /repositories/2510503 2025-03-28 10:35:31,500 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/bioformats to /repositories/2510503 2025-03-28 10:35:52,904 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-03-28 10:35:52,904 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-03-28 10:35:52,904 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-03-28 10:35:52,904 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-03-28 10:35:52,905 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-03-28 10:35:52,905 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2025-03-28 10:36:09,954 [ scc.git] INFO Overriding base-branch from master to main 2025-03-28 10:36:21,867 [ scc.git] INFO Overriding base-branch from master to develop 2025-03-28 10:37:14,499 [ scc.merge] INFO Repository: ome/bio-formats-build 2025-03-28 10:37:14,499 [ scc.merge] INFO Excluded PRs: 2025-03-28 10:37:14,499 [ scc.merge] INFO - PR 723 dependabot[bot] 'Bump ome-common-java from `2cb0b7b` to `ee7fb4c`' (status: failure) 2025-03-28 10:37:14,499 [ scc.merge] INFO Already up to date. 2025-03-28 10:37:14,499 [ scc.merge] INFO 2025-03-28 10:37:14,499 [ scc.merge] INFO Merged PRs: 2025-03-28 10:37:14,499 [ scc.merge] INFO - PR 721 dependabot[bot] 'Bump ome-model from `accccf2` to `3d70a1f`' 2025-03-28 10:37:14,499 [ scc.merge] INFO - PR 722 dependabot[bot] 'Bump bio-formats-examples from `6fa5e68` to `3aa7013`' 2025-03-28 10:37:14,499 [ scc.merge] INFO - PR 726 dependabot[bot] 'Bump bioformats from `f1654bc` to `c997de1`' 2025-03-28 10:37:14,499 [ scc.merge] INFO - PR 728 dependabot[bot] 'Bump bio-formats-documentation from `4a03a2e` to `db99c10`' 2025-03-28 10:37:14,499 [ scc.merge] INFO 2025-03-28 10:37:14,499 [ scc.merge] INFO Repository: ome/ZarrReader 2025-03-28 10:37:14,499 [ scc.merge] INFO Excluded PRs: 2025-03-28 10:37:14,499 [ scc.merge] INFO - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment) 2025-03-28 10:37:14,499 [ scc.merge] INFO Already up to date. 2025-03-28 10:37:14,499 [ scc.merge] INFO 2025-03-28 10:37:14,499 [ scc.merge] INFO 2025-03-28 10:37:14,499 [ scc.merge] INFO Repository: ome/bio-formats-documentation 2025-03-28 10:37:14,499 [ scc.merge] INFO Already up to date. 2025-03-28 10:37:14,499 [ scc.merge] INFO 2025-03-28 10:37:14,499 [ scc.merge] INFO Merged PRs: 2025-03-28 10:37:14,499 [ scc.merge] INFO - PR 409 melissalinkert 'Link to Farsight GitHub instead of wiki' 2025-03-28 10:37:14,499 [ scc.merge] INFO - PR 418 sbesson 'Update MATLAB documentation for colormap return value' 2025-03-28 10:37:14,499 [ scc.merge] INFO 2025-03-28 10:37:14,499 [ scc.merge] INFO Repository: ome/bio-formats-examples 2025-03-28 10:37:14,499 [ scc.merge] INFO Already up to date. 2025-03-28 10:37:14,499 [ scc.merge] INFO 2025-03-28 10:37:14,499 [ scc.merge] INFO 2025-03-28 10:37:14,499 [ scc.merge] INFO Repository: openmicroscopy/bioformats 2025-03-28 10:37:14,499 [ scc.merge] INFO Excluded PRs: 2025-03-28 10:37:14,499 [ scc.merge] INFO - PR 4294 nicolapapp 'Miscellaneous fixes to SlideBook7Reader.java' (user: nicolapapp) 2025-03-28 10:37:14,499 [ scc.merge] INFO - PR 4284 ptahmose 'fix for garbled images with CZIs' (user: ptahmose) 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 4260 melissalinkert 'UpgradeChecker: more thorough check of upgrade check result and HTTP response code' (stage: draft) 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 4254 melissalinkert 'Memoizer: ask any ImageReader instances to remove all but the current reader' (stage: draft) 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude) 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking) 2025-03-28 10:37:14,500 [ scc.merge] INFO Already up to date. 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO Merged PRs: 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)' 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 4243 melissalinkert 'Update IExtraMetadataWriter.setExtraMetadata(...) to accept an Object' 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 4289 melissalinkert 'ImageJ export plugin: add some checks to prevent file appending' 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 4292 melissalinkert 'Document time parsing and warn if time in milliseconds is out of range' 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 4293 sbesson 'Remove unnecessary Python script for bumping component versions' 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 4295 ctrueden 'Address CVE-2023-32697' 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO Repository: ome/ome-codecs 2025-03-28 10:37:14,500 [ scc.merge] INFO Already up to date. 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO Repository: ome/ome-common-java 2025-03-28 10:37:14,500 [ scc.merge] INFO Updating 2cb0b7b..ee7fb4c 2025-03-28 10:37:14,500 [ scc.merge] INFO Previously merged: 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 99 melissalinkert 'Fix type of skipped bytes counter' 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 98 sbesson 'Add CodeQL workflow running on push and pull request events' 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO Merged PRs: 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 100 melissalinkert 'Add DataTools.readFile signature that accepts an encoding name' 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO Repository: ome/ome-jai 2025-03-28 10:37:14,500 [ scc.merge] INFO Already up to date. 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO Repository: ome/ome-mdbtools 2025-03-28 10:37:14,500 [ scc.merge] INFO Already up to date. 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO Repository: ome/ome-metakit 2025-03-28 10:37:14,500 [ scc.merge] INFO Already up to date. 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO Repository: ome/ome-model 2025-03-28 10:37:14,500 [ scc.merge] INFO Already up to date. 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO Merged PRs: 2025-03-28 10:37:14,500 [ scc.merge] INFO - PR 221 melissalinkert 'Replace mailing lists and QA with forum.image.sc and Zenodo' 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO Repository: ome/ome-poi 2025-03-28 10:37:14,500 [ scc.merge] INFO Already up to date. 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO 2025-03-28 10:37:14,500 [ scc.merge] INFO Repository: ome/ome-stubs 2025-03-28 10:37:14,500 [ scc.merge] INFO Already up to date. 2025-03-28 10:37:14,501 [ scc.merge] INFO 2025-03-28 10:37:14,501 [ scc.merge] INFO 2025-03-28 10:37:37,362 [ scc.merge] INFO Merged branch pushed to https://github.com/snoopycrimecop/bio-formats-build/tree/merge_ci + echo 'Update maven component versions' Update maven component versions + update-versions OMEZarrReader=0.6.1-SNAPSHOT bio-formats-documentation=8.2.0-SNAPSHOT bio-formats-examples=8.2.0-SNAPSHOT bio-formats_plugins=8.2.0-SNAPSHOT bio-formats-tools=8.2.0-SNAPSHOT bioformats_package=8.2.0-SNAPSHOT turbojpeg=8.2.0-SNAPSHOT formats-api=8.2.0-SNAPSHOT formats-bsd=8.2.0-SNAPSHOT formats-gpl=8.2.0-SNAPSHOT test-suite=8.2.0-SNAPSHOT pom-bio-formats=8.2.0-SNAPSHOT bioformats=8.2.0-SNAPSHOT ome-codecs=1.1.1-SNAPSHOT ome-common=6.0.26-SNAPSHOT ome-jai=0.1.5-SNAPSHOT ome-mdbtools=5.3.4-SNAPSHOT metakit=5.8.9-SNAPSHOT ome-xml=6.5.0-SNAPSHOT specification=6.5.0-SNAPSHOT ome-model=6.5.0-SNAPSHOT ome-poi=5.3.10-SNAPSHOT mipav-stubs=6.0.3-SNAPSHOT ome-stubs=6.0.3-SNAPSHOT + echo 'Commit all component version changes' Commit all component version changes + git submodule foreach 'git add -u' Entering 'ZarrReader' Entering 'bio-formats-documentation' Entering 'bio-formats-examples' Entering 'bioformats' Entering 'ome-codecs' Entering 'ome-common-java' Entering 'ome-jai' Entering 'ome-mdbtools' Entering 'ome-metakit' Entering 'ome-model' Entering 'ome-poi' Entering 'ome-stubs' + git submodule foreach 'git commit -m '\''Update component versions'\'' || true' Entering 'ZarrReader' HEAD detached from 31d6d95 nothing to commit, working tree clean Entering 'bio-formats-documentation' [detached HEAD ec0aff85] Update component versions 1 file changed, 7 insertions(+), 7 deletions(-) Entering 'bio-formats-examples' [detached HEAD b8e0245] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'bioformats' [detached HEAD 519222dad0] Update component versions 1 file changed, 9 insertions(+), 9 deletions(-) Entering 'ome-codecs' [detached HEAD ef1d1e1] Update component versions 1 file changed, 2 insertions(+), 2 deletions(-) Entering 'ome-common-java' HEAD detached from 2cb0b7b nothing to commit, working tree clean Entering 'ome-jai' HEAD detached from e70c2ab nothing to commit, working tree clean Entering 'ome-mdbtools' HEAD detached from 9193930 nothing to commit, working tree clean Entering 'ome-metakit' [detached HEAD b1560b1] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'ome-model' [detached HEAD 4d779234] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'ome-poi' [detached HEAD 344a66c] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'ome-stubs' HEAD detached from 1559997 nothing to commit, working tree clean + echo 'Push all branches' Push all branches ++ git config github.user + user=snoopycrimecop + git submodule foreach 'git push -f git@github.com:snoopycrimecop/${path}.git HEAD:merge_ci' Entering 'ZarrReader' Everything up-to-date Entering 'bio-formats-documentation' To github.com:snoopycrimecop/bio-formats-documentation.git d66d44a9..ec0aff85 HEAD -> merge_ci Entering 'bio-formats-examples' To github.com:snoopycrimecop/bio-formats-examples.git 4cba8db..b8e0245 HEAD -> merge_ci Entering 'bioformats' To github.com:snoopycrimecop/bioformats.git 88f73f3770..519222dad0 HEAD -> merge_ci Entering 'ome-codecs' To github.com:snoopycrimecop/ome-codecs.git 10ca5d0..ef1d1e1 HEAD -> merge_ci Entering 'ome-common-java' Everything up-to-date Entering 'ome-jai' Everything up-to-date Entering 'ome-mdbtools' Everything up-to-date Entering 'ome-metakit' To github.com:snoopycrimecop/ome-metakit.git 3c08fbf..b1560b1 HEAD -> merge_ci Entering 'ome-model' To github.com:snoopycrimecop/ome-model.git 682363cb..4d779234 HEAD -> merge_ci Entering 'ome-poi' To github.com:snoopycrimecop/ome-poi.git 7f8a4c9..344a66c HEAD -> merge_ci Entering 'ome-stubs' Everything up-to-date + echo 'Commit all component version changes' Commit all component version changes + git add -u + git commit -m 'Update component versions' [detached HEAD e75e83d] Update component versions 7 files changed, 7 insertions(+), 7 deletions(-) + git push -f git@github.com:snoopycrimecop/bio-formats-build.git HEAD:merge_ci To github.com:snoopycrimecop/bio-formats-build.git f5da84e..e75e83d HEAD -> merge_ci [BIOFORMATS-push] $ /bin/bash -xe /tmp/jenkins10060785497835961453.sh + mkdir -p /home/omero/workspace/BIOFORMATS-push/target + cd /home/omero/workspace/BIOFORMATS-push/target + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + export PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/BIOFORMATS-push/target/build-infra-master/ + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/BIOFORMATS-push/target/build-infra-master/ + cd /home/omero/workspace/BIOFORMATS-push/bio-formats-build + foreach-get-version + foreach-get-version-as-property Archiving artifacts Finished: SUCCESS