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Started by upstream project "BIOFORMATS-test-repo" build number 67 originally caused by: Started by upstream project "Trigger" build number 75 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins7400550273526920428.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_10062_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:56:02,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:56:02,407 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:56:02,407 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:56:02,409 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:56:02,409 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:56:02,410 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:56:02,410 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:56:02,410 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:56:02,411 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:56:02,412 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:56:02,412 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:56:02,413 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:56:02,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:56:02,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:56:02,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:56:02,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:56:02,629 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:56:02,629 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:56:02,630 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:56:02,630 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:56:02,630 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:56:02,631 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:56:02,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 220 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-18 01:56:02,642] [main] java.version = 11.0.16 [testng] 01:56:02,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:56:02,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:56:02,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-18_01-56-02.log] [testng] 01:56:02,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-05-18 01:56:02,694] [main] testng.directory = /data [testng] [2024-05-18 01:56:02,694] [main] testng.configDirectory = /config [testng] [2024-05-18 01:56:02,705] [main] testng.multiplier = 1.0 [testng] [2024-05-18 01:56:02,706] [main] testng.in-memory = false [testng] [2024-05-18 01:56:02,707] [main] testng.allow-missing = false [testng] [2024-05-18 01:56:02,707] [main] user.language = en [testng] [2024-05-18 01:56:02,707] [main] user.country = ${user.country} [testng] [2024-05-18 01:56:02,707] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-18 02:03:36,941] [main] ---------------------------------------- [testng] [2024-05-18 02:03:36,942] [main] Total files: 7329 [testng] [2024-05-18 02:03:36,942] [main] Scan time: 454.234 s (61 ms/file) [testng] [2024-05-18 02:03:36,942] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-18 02:07:05,868] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 02:07:05,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:05,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:05,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-18_02-07-05.log] [testng] 02:07:05,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e2ebcd3 - End of configuration. [testng] [2024-05-18 02:07:05,984] [pool-1-thread-1] Used files list does not include base file [testng] [2024-05-18 02:07:05,992] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 02:07:05,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:05,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:05,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-18_02-07-05.log] [testng] 02:07:05,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf1a805 - End of configuration. [testng] [2024-05-18 02:07:06,804] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 02:07:06,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:06,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:06,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-18_02-07-06.log] [testng] 02:07:06,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c68007b - End of configuration. [testng] [2024-05-18 02:07:06,916] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 02:07:06,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:06,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:06,917 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-18_02-07-06.log] [testng] 02:07:06,917 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a2337 - End of configuration. [testng] [2024-05-18 02:07:06,998] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 02:07:06,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:06,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:06,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-18_02-07-06.log] [testng] 02:07:07,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47abc2d - End of configuration. [testng] [2024-05-18 02:07:07,060] [pool-1-thread-9] Used files list does not include base file [testng] [2024-05-18 02:07:07,063] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 02:07:07,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:07,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:07,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-18_02-07-07.log] [testng] 02:07:07,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bd39371 - End of configuration. [testng] [2024-05-18 02:07:07,119] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 02:07:07,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:07,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:07,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-18_02-07-07.log] [testng] 02:07:07,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ca1500 - End of configuration. [testng] [2024-05-18 02:07:07,151] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 02:07:07,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:07,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:07,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-18_02-07-07.log] [testng] 02:07:07,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@435bf027 - End of configuration. [testng] [2024-05-18 02:07:07,224] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 02:07:07,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:07,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:07,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-18_02-07-07.log] [testng] 02:07:07,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fe74e9f - End of configuration. [testng] [2024-05-18 02:07:07,318] [pool-1-thread-5] Used files list does not include base file [testng] [2024-05-18 02:07:07,322] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 02:07:07,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:07,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:07,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-18_02-07-07.log] [testng] 02:07:07,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21bff5e8 - End of configuration. [testng] [2024-05-18 02:07:07,506] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 02:07:07,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:07,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:07,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-18_02-07-07.log] [testng] 02:07:07,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58b3731 - End of configuration. [testng] [2024-05-18 02:07:07,585] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 02:07:07,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:07,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:07,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-18_02-07-07.log] [testng] 02:07:07,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@86b6369 - End of configuration. [testng] [2024-05-18 02:07:09,605] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-05-18 02:07:10,228] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-05-18 02:07:10,730] [pool-1-thread-11] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-05-18 02:07:10,787] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-05-18 02:07:10,915] [pool-1-thread-7] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-05-18 02:07:11,083] [pool-1-thread-10] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-05-18 02:07:11,238] [pool-1-thread-6] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-05-18 02:07:11,516] [pool-1-thread-4] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-05-18 02:07:12,165] [pool-1-thread-11] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-05-18 02:07:12,596] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-05-18 02:07:12,894] [pool-1-thread-6] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-05-18 02:07:13,151] [pool-1-thread-4] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-05-18 02:07:13,291] [pool-1-thread-1] Initializing /data/samples/zseries.stk: [testng] [2024-05-18 02:07:13,472] [pool-1-thread-8] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-05-18 02:07:13,567] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-18 02:07:13,592] [pool-1-thread-9] Used files list does not include base file [testng] [2024-05-18 02:07:13,627] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-05-18 02:07:13,937] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-05-18 02:07:14,203] [pool-1-thread-10] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-05-18 02:07:14,811] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-05-18 02:07:14,882] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-05-18 02:07:14,975] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-05-18 02:07:15,052] [pool-1-thread-4] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-05-18 02:07:15,233] [pool-1-thread-9] Initializing /data/steve/Experiment2.stk: [testng] [2024-05-18 02:07:15,312] [pool-1-thread-1] Initializing /data/josh/2101to600f.stk: [testng] [2024-05-18 02:07:17,768] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-05-18 02:07:17,813] [pool-1-thread-8] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-05-18 02:07:17,883] [pool-1-thread-4] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-05-18 02:07:18,301] [pool-1-thread-9] Initializing /data/david/tl4.tif: [testng] [2024-05-18 02:07:18,958] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-05-18 02:07:19,103] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-05-18 02:07:19,152] [pool-1-thread-12] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-05-18 02:07:19,234] [pool-1-thread-5] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-05-18 02:07:19,426] [pool-1-thread-7] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] 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Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-05-18 02:07:23,736] [pool-1-thread-11] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-05-18 02:07:23,953] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-18 02:07:24,282] [pool-1-thread-8] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-05-18 02:07:24,340] [pool-1-thread-3] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-05-18 02:07:24,581] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-05-18 02:07:25,350] [pool-1-thread-8] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-05-18 02:07:25,457] [pool-1-thread-3] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-05-18 02:07:25,922] [pool-1-thread-12] Initializing 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[pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-05-18 02:07:28,428] [pool-1-thread-12] Used files list does not include base file [testng] [2024-05-18 02:07:28,964] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-05-18 02:07:29,399] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-18 02:07:31,968] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-05-18 02:07:32,016] [pool-1-thread-9] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-05-18 02:07:32,126] [pool-1-thread-12] Initializing /data/qa-16887/m-01.tif: [testng] [2024-05-18 02:07:32,514] [pool-1-thread-4] Initializing /data/josh/2101to400astk.stk: [testng] [2024-05-18 02:07:34,058] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-05-18 02:07:34,234] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-05-18 02:07:34,256] [pool-1-thread-1] Used files list does not include base file [testng] [2024-05-18 02:07:34,603] [pool-1-thread-3] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. 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02:07:52,028] [pool-1-thread-7] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-05-18 02:07:52,118] [pool-1-thread-4] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-05-18 02:07:53,247] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-05-18 02:07:53,590] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-18 02:07:53,929] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-05-18 02:07:54,005] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-05-18 02:07:54,801] [pool-1-thread-10] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-05-18 02:07:54,918] [pool-1-thread-9] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-05-18 02:07:55,451] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-05-18 02:07:55,777] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-05-18 02:07:55,862] [pool-1-thread-12] Initializing /data/steve/Experiment2.tif: [testng] [2024-05-18 02:07:56,452] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-05-18 02:07:56,538] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-05-18 02:07:56,714] [pool-1-thread-11] Initializing /data/jerome/deconv.STK: [testng] [2024-05-18 02:07:57,385] [pool-1-thread-7] Initializing /data/qa-16915/m-04.tif: [testng] [2024-05-18 02:07:58,076] [pool-1-thread-12] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-05-18 02:07:58,158] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full 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[pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-18 02:08:04,267] [pool-1-thread-3] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-05-18 02:08:05,085] [pool-1-thread-12] Initializing /data/thomas/test.tif: [testng] [2024-05-18 02:08:05,165] [pool-1-thread-9] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-05-18 02:08:05,841] [pool-1-thread-7] Initializing /data/qa-16915/m-02.tif: [testng] [2024-05-18 02:08:06,509] [pool-1-thread-9] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-05-18 02:08:06,792] [pool-1-thread-12] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-05-18 02:08:07,268] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-05-18 02:08:07,354] [pool-1-thread-2] Used files list does not include base file [testng] [2024-05-18 02:08:07,683] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-05-18 02:08:10,073] [pool-1-thread-1] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-05-18 02:08:10,634] [pool-1-thread-10] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-05-18 02:08:10,933] [pool-1-thread-4] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-05-18 02:08:11,182] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-05-18 02:08:12,593] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-05-18 02:08:12,694] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-05-18 02:08:12,894] [pool-1-thread-2] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-05-18 02:08:14,420] [pool-1-thread-3] Initializing 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02:08:18,250] [pool-1-thread-3] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-05-18 02:08:18,499] [pool-1-thread-7] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-05-18 02:08:19,642] [pool-1-thread-7] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-05-18 02:08:19,736] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-18 02:08:20,317] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-05-18 02:08:20,618] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-05-18 02:08:21,023] [pool-1-thread-3] Initializing /data/thomas/t_test2001.tif: [testng] [2024-05-18 02:08:21,271] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-05-18 02:08:21,380] [pool-1-thread-4] Used files list does not include base file [testng] [2024-05-18 02:08:21,977] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-18 02:08:22,032] [pool-1-thread-3] Used files list does not include base file [testng] [2024-05-18 02:08:22,042] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-05-18 02:08:22,388] [pool-1-thread-1] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-05-18 02:08:23,026] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-05-18 02:08:23,502] [pool-1-thread-3] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-05-18 02:08:24,076] [pool-1-thread-12] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-05-18 02:08:24,918] [pool-1-thread-3] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-05-18 02:08:34,880] [pool-1-thread-7] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-05-18 02:08:35,701] [pool-1-thread-4] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-05-18 02:08:36,199] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-05-18 02:08:36,276] [pool-1-thread-12] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-05-18 02:08:36,941] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-05-18 02:08:37,015] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-18 02:08:38,025] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-05-18 02:08:38,353] [pool-1-thread-10] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-05-18 02:08:39,388] [pool-1-thread-4] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-05-18 02:08:39,535] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-05-18 02:08:40,443] [pool-1-thread-10] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-05-18 02:08:41,363] [pool-1-thread-4] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-05-18 02:08:41,462] [pool-1-thread-11] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-05-18 02:08:41,733] [pool-1-thread-7] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-05-18 02:08:42,863] [pool-1-thread-4] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-05-18 02:08:43,460] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-05-18 02:08:43,868] [pool-1-thread-4] Initializing /data/qa-16915/m-01.tif: [testng] [2024-05-18 02:08:44,838] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-05-18 02:08:45,137] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-05-18 02:08:45,264] [pool-1-thread-11] Used files list does not include base file [testng] [2024-05-18 02:08:46,142] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-05-18 02:08:46,685] [pool-1-thread-7] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-05-18 02:08:47,216] [pool-1-thread-9] Initializing /data/jae/RGB_s34.tif: [testng] [2024-05-18 02:08:47,826] [pool-1-thread-4] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-05-18 02:08:48,244] [pool-1-thread-10] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-05-18 02:08:49,465] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-05-18 02:08:49,550] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-18 02:08:49,568] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-05-18 02:08:49,971] [pool-1-thread-11] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-05-18 02:08:50,087] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-05-18 02:08:50,764] [pool-1-thread-11] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-05-18 02:08:50,954] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-05-18 02:08:51,387] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-18 02:08:53,307] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-05-18 02:08:53,522] [pool-1-thread-11] Initializing /data/ascb/mt aim.tif: [testng] [2024-05-18 02:08:53,623] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-05-18 02:08:55,163] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-05-18 02:08:55,525] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-05-18 02:08:55,643] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-18 02:08:55,837] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-05-18 02:08:56,025] [pool-1-thread-1] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-05-18 02:08:57,390] [pool-1-thread-10] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-05-18 02:08:57,528] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-05-18 02:08:58,231] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-05-18 02:08:58,330] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-05-18 02:08:58,472] [pool-1-thread-11] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 minutes 56 seconds Finished: SUCCESS