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Started by upstream project "BIOFORMATS-test-repo" build number 7 originally caused by: Started by upstream project "Trigger" build number 10 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins17076038277828692628.sh + '[' zeiss-czi = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_1008_merge_ci -v /uod/idr/repos/curated/zeiss-czi:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-czi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:30:41,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:30:41,733 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 00:30:41,733 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:41,734 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:41,734 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:30:41,734 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:30:41,735 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:30:41,735 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:41,735 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:41,736 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:30:41,736 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:30:41,737 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:30:41,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:30:41,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:30:41,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:30:41,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:30:41,931 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:30:41,932 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:30:41,932 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:30:41,932 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:30:41,932 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 00:30:41,933 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 00:30:41,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-21 00:30:41,942] [main] java.version = 21 [testng] 00:30:41,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:30:41,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:41,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-21_00-30-41.log] [testng] 00:30:41,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-03-21 00:30:41,989] [main] testng.directory = /data [testng] [2024-03-21 00:30:41,989] [main] testng.configDirectory = /config [testng] [2024-03-21 00:30:41,998] [main] testng.multiplier = 1.0 [testng] [2024-03-21 00:30:41,998] [main] testng.in-memory = false [testng] [2024-03-21 00:30:41,998] [main] testng.allow-missing = false [testng] [2024-03-21 00:30:41,998] [main] user.language = en [testng] [2024-03-21 00:30:41,999] [main] user.country = ${user.country} [testng] [2024-03-21 00:30:41,999] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-21 00:32:51,719] [main] ---------------------------------------- [testng] [2024-03-21 00:32:51,719] [main] Total files: 503 [testng] [2024-03-21 00:32:51,719] [main] Scan time: 129.72 s (257 ms/file) [testng] [2024-03-21 00:32:51,720] [main] ---------------------------------------- [testng] [Fatal Error] :11:3: The element type "METADATA" must be terminated by the matching end-tag "</METADATA>". [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :11:2: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:5: The element type "DataSchema" must be terminated by the matching end-tag "</DataSchema>". [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:5: The element type "DataSchema" must be terminated by the matching end-tag "</DataSchema>". [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:5: The element type "DataSchema" must be terminated by the matching end-tag "</DataSchema>". [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :11:3: The element type "METADATA" must be terminated by the matching end-tag "</METADATA>". [testng] [Fatal Error] :10:5: The element type "DataSchema" must be terminated by the matching end-tag "</DataSchema>". [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :11:2: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :11:2: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:5: The element type "DataSchema" must be terminated by the matching end-tag "</DataSchema>". [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:15: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :10:16: XML document structures must start and end within the same entity. [testng] [Fatal Error] :9:2: XML document structures must start and end within the same entity. [testng] Building list of tests... [testng] Ready to test 473 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-21 00:52:26,091] [pool-1-thread-1] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/ConfocalCh3T3Z3/ConfocalCh3T3Z3.czi: [testng] 00:52:26,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:52:26,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:26,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-21_00-52-26.log] [testng] 00:52:26,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a05b572 - End of configuration. [testng] [2024-03-21 00:52:26,205] [pool-1-thread-12] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/ConfocalCh3T1Z1/ConfocalCh3T1Z1.czi: [testng] 00:52:26,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:52:26,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:26,206 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-21_00-52-26.log] [testng] 00:52:26,206 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45b60071 - End of configuration. [testng] [2024-03-21 00:52:26,298] [pool-1-thread-11] Initializing /data/michael/multipos-z.czi: [testng] 00:52:26,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:52:26,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:26,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-21_00-52-26.log] [testng] 00:52:26,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53189748 - End of configuration. [testng] [2024-03-21 00:52:26,476] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-21-Scene-1-P3-C4-01.czi: [testng] 00:52:26,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:52:26,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:26,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-21_00-52-26.log] [testng] 00:52:26,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b3587f8 - End of configuration. [testng] [2024-03-21 00:52:26,854] [pool-1-thread-9] Initializing /data/sebastian/october-2016/96Well_Ch=1_50Wells_9P_pro_Well.czi: [testng] 00:52:26,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:52:26,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:26,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-21_00-52-26.log] [testng] 00:52:26,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cfc6f9b - End of configuration. [testng] [2024-03-21 00:52:27,673] [pool-1-thread-8] Initializing /data/aaron/ticket-13186/Image_2.czi: [testng] 00:52:27,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:52:27,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:27,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-21_00-52-27.log] [testng] 00:52:27,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@758b19fe - End of configuration. [testng] [2024-03-21 00:52:27,740] [pool-1-thread-7] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-30-Scene-1-P3-C6-01.czi: [testng] 00:52:27,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:52:27,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:27,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-21_00-52-27.log] [testng] 00:52:27,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@727340a3 - End of configuration. [testng] [2024-03-21 00:52:28,492] [pool-1-thread-6] Initializing /data/zeiss/zstd/ZEISS_LLS_2048X_500Y_50Z_3T_1M_2C_16Bit/ZEISS_LLS_2048X_500Y_50Z_3T_1M_2C_16Bit_Uncompressed.czi: [testng] 00:52:28,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:52:28,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:28,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-21_00-52-28.log] [testng] 00:52:28,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d39eff - End of configuration. [testng] [2024-03-21 00:52:28,674] [pool-1-thread-5] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-22-Scene-2-P2-D4-02.czi: [testng] 00:52:28,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:52:28,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:28,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-21_00-52-28.log] [testng] 00:52:28,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b988f7b - End of configuration. [testng] [2024-03-21 00:52:29,365] [pool-1-thread-4] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/PALM_OnlineVerrechnet.czi: [testng] 00:52:29,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:52:29,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:29,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-21_00-52-29.log] [testng] 00:52:29,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c5f8c26 - End of configuration. [testng] [2024-03-21 00:52:29,416] [pool-1-thread-3] Initializing /data/zeiss/jpeg-xr/b)BF-2scenes-nozstack-compression85%.czi: [testng] 00:52:29,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:52:29,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:29,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-21_00-52-29.log] [testng] 00:52:29,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b3b68ce - End of configuration. [testng] [2024-03-21 00:52:31,127] [pool-1-thread-2] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-16-Scene-1-P1-C3-01.czi: [testng] 00:52:31,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:52:31,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:31,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-21_00-52-31.log] [testng] 00:52:31,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e77db38 - End of configuration. [testng] [2024-03-21 00:52:33,341] [pool-1-thread-8] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-06-Scene-1-P3-A1-01.czi: [testng] [2024-03-21 00:52:34,229] [pool-1-thread-11] Initializing /data/qa-9410/cav_PALM_drift_correct_Convert to Image.czi: [testng] [2024-03-21 00:52:34,758] [pool-1-thread-2] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Misc/ztacktimeposition.czi: [testng] [2024-03-21 00:52:34,800] [pool-1-thread-7] Initializing /data/zeiss/zstd/ZEISS_LLS_2048X_500Y_1Z_50T_1M_1C_16Bit/ZEISS_LLS_2048X_500Y_1Z_50T_1M_1C_16Bit_Uncompressed.czi: [testng] [2024-03-21 00:52:34,938] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-12-Scene-1-P2-F2-01.czi: [testng] [2024-03-21 00:52:35,663] [pool-1-thread-5] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Misc/positions.czi: [testng] [2024-03-21 00:52:35,818] [pool-1-thread-1] Initializing /data/qa-17711/2017_05_04__09_10__0001.czi: [testng] [2024-03-21 00:52:37,684] [pool-1-thread-6] Initializing /data/zeiss/zstd/ZEISS_LLS_2048X_500Y_374Z_1T_2M_1C_16Bit/ZEISS_LLS_2048X_500Y_374Z_1T_2M_1C_16Bit_Uncompressed.czi: [testng] [2024-03-21 00:52:37,875] [pool-1-thread-4] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Misc/Channel-Positions.czi: [testng] [2024-03-21 00:52:37,973] [pool-1-thread-12] Initializing /data/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Unspecified/rendertest.czi: [testng] [Fatal Error] :9:2: XML document structures must start and end within the same entity. [testng] [2024-03-21 00:52:38,323] [pool-1-thread-8] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-24-Scene-3-P2-F4-03.czi: [testng] [Fatal Error] :9:2: XML document structures must start and end within the same entity. [testng] [Fatal Error] :9:2: XML document structures must start and end within the same entity. [testng] [Fatal Error] :9:2: XML document structures must start and end within the same entity. [testng] [Fatal Error] :9:2: XML document structures must start and end within the same entity. [testng] [Fatal Error] :9:2: XML document structures must start and end within the same entity. [testng] [Fatal Error] :9:2: XML document structures must start and end within the same entity. [testng] [2024-03-21 00:52:39,598] [pool-1-thread-5] Initializing /data/zeiss/zstd/ZEISS_LLS_2048X_500Y_50Z_3T_1M_1C_16Bit/ZEISS_LLS_2048X_500Y_50Z_3T_1M_1C_16Bit_Uncompressed.czi: [testng] [2024-03-21 00:52:39,783] [pool-1-thread-12] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-23-Scene-1-P3-E4-01.czi: [testng] [2024-03-21 00:52:40,521] [pool-1-thread-10] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/Time_Bleaching_Marker_BleachROI.czi: [testng] [2024-03-21 00:52:40,570] [pool-1-thread-2] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-16-Scene-3-P3-C3-03.czi: [testng] [2024-03-21 00:52:41,188] [pool-1-thread-4] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/AiryscanCh1T1Z1/AiryscanCh1T1Z1.czi: [testng] [2024-03-21 00:52:41,283] [pool-1-thread-11] Initializing /data/nottingham/incorrect-colors/Image 6_Structured Illumination.czi: [testng] [2024-03-21 00:52:42,062] [pool-1-thread-8] Initializing /data/zeiss/zstd/airyscan/AiryScan_680X680Y_16Bit_ZSTD-0_compressed_Quality50.czi: [testng] [2024-03-21 00:52:42,216] [pool-1-thread-7] Initializing /data/zeiss/zstd/8bit/ZEISS_LSM_512X_512Y_1Z_1T_1M_1C_8Bit_ZSTD-1.czi: [testng] [2024-03-21 00:52:43,002] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-17-Scene-2-P3-B3-02.czi: [testng] [2024-03-21 00:52:43,918] [pool-1-thread-12] Initializing /data/vito/CalliphoraSalgld_lambda_FM4-64TMRE011.czi: [testng] [2024-03-21 00:52:44,136] [pool-1-thread-2] Initializing /data/qa-17740/2017-05-12 16_55_07-omero@omero_ _OMERO_DropBox_SPP1757.png: [testng] [2024-03-21 00:52:44,284] [pool-1-thread-4] Initializing /data/vito/zf_psa.czi: [testng] [2024-03-21 00:52:44,337] [pool-1-thread-7] Initializing /data/zeiss/zstd/ZEISS_LLS_2048X_500Y_374Z_1T_2M_1C_16Bit/ZEISS_LLS_2048X_500Y_374Z_1T_2M_1C_16Bit_ZSTD0.czi: [testng] [2024-03-21 00:52:44,539] [pool-1-thread-8] Initializing /data/nottingham/incorrect-colors/SIM SpinalChord2ch SeqFrame modeLongerExpo_OutResaved.lsm: [testng] [2024-03-21 00:52:44,589] [pool-1-thread-5] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/MT-Tilescan2-3stitched.czi: [testng] [2024-03-21 00:52:44,806] [pool-1-thread-6] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-05-Scene-1-P3-B1-01.czi: [testng] [2024-03-21 00:52:45,647] [pool-1-thread-2] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-18-Scene-1-P1-A3-01.czi: [testng] [2024-03-21 00:52:46,456] [pool-1-thread-12] Initializing /data/zeiss/zstd/LLS_50Z_3T_1M_2C/ZEISS_LLS_2048X_500Y_50Z_3T_1M_2C_16Bit_Uncompressed.czi: [testng] [2024-03-21 00:52:46,753] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-33-Scene-1-P1-F6-01.czi: [testng] [2024-03-21 00:52:47,152] [pool-1-thread-11] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Misc/2C_LUTs_Rainbow_Spectrum.czi: [testng] [2024-03-21 00:52:47,192] [pool-1-thread-4] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/3D/Zstack_003.czi: [testng] [2024-03-21 00:52:49,336] [pool-1-thread-5] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-20-Scene-3-P2-B4-03.czi: [testng] [2024-03-21 00:52:50,449] [pool-1-thread-6] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-Scene-1-P2-F1-01.czi: [testng] [2024-03-21 00:52:50,969] [pool-1-thread-2] Initializing /data/zeiss/samples/ztacktimeposition16bit.czi: [testng] [2024-03-21 00:52:50,998] [pool-1-thread-8] Initializing /data/zeiss/zen-2012/Widefield/BPAE-cells-bin2x2_3chTZ(WF).czi: [testng] [2024-03-21 00:52:51,150] [pool-1-thread-7] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/ScanModes/LineScan_Z200.czi: [testng] [2024-03-21 00:52:51,448] [pool-1-thread-11] Initializing /data/zeiss/zen-2012/Widefield/BPAE-cells_mitosis_3chZ(WF).czi: [testng] [2024-03-21 00:52:51,586] [pool-1-thread-5] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/3D/NLO_ZStack_0013.czi: [testng] [2024-03-21 00:52:51,864] [pool-1-thread-10] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/AiryscanCh3T1Z5/AiryscanCh3T1Z5.czi: [testng] [2024-03-21 00:52:51,969] [pool-1-thread-4] Initializing /data/zeiss/zstd/ZEISS_LSM_512X_512Y_1Z_1T_1M_1C_8Bit/ZEISS_LSM_512X_512Y_1Z_1T_1M_1C_8Bit_ZSTD0.czi: [testng] [2024-03-21 00:52:52,210] [pool-1-thread-6] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Misc/Channel-3-Channels-ZStack-FrameScan-Integration-And-PhotonCounting.czi: [testng] [2024-03-21 00:52:52,388] [pool-1-thread-12] Initializing /data/vito/hp1am26zelle14 RICS.czi: [testng] [2024-03-21 00:52:52,701] [pool-1-thread-7] Initializing /data/zeiss/zen-2012/CellObserver SD/Micrasterias fimbriata#1_2chTZ(SD).czi: [testng] [2024-03-21 00:52:53,359] [pool-1-thread-2] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-07-Scene-2-P3-A2-02.czi: [testng] [2024-03-21 00:52:54,045] [pool-1-thread-8] Initializing /data/zeiss/zstd/LLS_374Z_1T_2M_1C/ZEISS_LLS_2048X_500Y_374Z_1T_2M_1C_16Bit_ZSTD1.czi: [testng] [2024-03-21 00:52:54,412] [pool-1-thread-5] Initializing /data/zeiss/zstd/ZEISS_LLS_2048X_500Y_50Z_1T_1M_1C_16Bit/ZEISS_LLS_2048X_500Y_50Z_1T_1M_1C_16Bit_ZSTD0_from_Uncompressed.czi: [testng] [2024-03-21 00:52:54,799] [pool-1-thread-6] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-31-Scene-1-P1-D6-01.czi: [testng] [2024-03-21 00:52:55,580] [pool-1-thread-4] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/ConfocalCh1T3Z3/ConfocalCh1T3Z3.czi: [testng] [2024-03-21 00:52:55,711] [pool-1-thread-11] Initializing /data/zeiss/zstd/LLS_374Z_1T_2M_2C/ZEISS_LLS_2048X_500Y_374Z_1T_2M_2C_16Bit_Uncompressed.czi: [testng] [2024-03-21 00:52:56,000] [pool-1-thread-12] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-35-Scene-3-P2-E7-03.czi: [testng] [2024-03-21 00:52:56,462] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-37-Scene-1-P1-B7-01.czi: [testng] [2024-03-21 00:52:57,476] [pool-1-thread-2] Initializing /data/qa-27508/SKIP-NMD_4053-101_Batch1_A-Sarc_0712.czi: [testng] [2024-03-21 00:53:02,027] [pool-1-thread-6] Initializing /data/michael-porter/3x1 Tile 3 Colour Airyscan Fast SR with Z - Well 2_Airyscan Processing_Stitch.czi: [testng] [2024-03-21 00:53:02,710] [pool-1-thread-4] Initializing /data/qa-4981/CZI linescanbug/LSMfile_usingloci.png: [testng] [2024-03-21 00:53:02,726] [pool-1-thread-12] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-17-Scene-3-P2-B3-03.czi: [testng] [2024-03-21 00:53:03,735] [pool-1-thread-10] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/Image 16_Spectral channel extraction.czi: [testng] [2024-03-21 00:53:04,081] [pool-1-thread-5] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/DCV_LSM/NeuronsStack.czi: [testng] [2024-03-21 00:53:04,505] [pool-1-thread-7] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-Scene-3-P3-F1-03.czi: [testng] [2024-03-21 00:53:04,871] [pool-1-thread-8] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-35-Scene-2-P1-E7-02.czi: [testng] [2024-03-21 00:53:05,331] [pool-1-thread-11] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-40-Scene-3-P3-D8-03.czi: [testng] [2024-03-21 00:53:05,833] [pool-1-thread-4] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-07-Scene-3-P1-A2-03.czi: [testng] [2024-03-21 00:53:06,490] [pool-1-thread-10] Initializing /data/zeiss/zstd/airyscan/AiryScan_680X680Y_16Bit_Uncompressed.czi: [testng] [2024-03-21 00:53:06,623] [pool-1-thread-12] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-24-Scene-2-P3-F4-02.czi: [testng] [2024-03-21 00:53:07,888] [pool-1-thread-7] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-11-Scene-3-P3-E2-03.czi: [testng] [2024-03-21 00:53:08,246] [pool-1-thread-8] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-34-Scene-2-P2-F7-02.czi: [testng] [2024-03-21 00:53:09,290] [pool-1-thread-11] Initializing /data/qa-11104/Jumping_dom_brain3_slide1.czi: [testng] [2024-03-21 00:53:11,907] [pool-1-thread-4] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/ConfocalCh1T1Z1/ConfocalCh1T1Z1.czi: [testng] [2024-03-21 00:53:12,030] [pool-1-thread-12] Initializing /data/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Dualcam/redgreen.czi: [testng] [2024-03-21 00:53:12,083] [pool-1-thread-10] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/AiryscanProcessedCh3T1Z1/AiryscanProcessedCh3T1Z1.czi: [testng] [2024-03-21 00:53:12,154] [pool-1-thread-5] Initializing /data/vito/ratbrainstack_render.czi: [testng] [2024-03-21 00:53:12,664] [pool-1-thread-8] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/ScanModes/SpotScan_T50000.czi: [testng] [2024-03-21 00:53:14,568] [pool-1-thread-7] Initializing /data/zeiss/jpeg-xr/e)BF-1scene-nozstack-compressionlossless.czi: [testng] [2024-03-21 00:53:15,063] [pool-1-thread-5] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Misc/stack16bit.czi: [testng] [2024-03-21 00:53:15,187] [pool-1-thread-4] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-14-Scene-1-P1-E3-01.czi: [testng] [2024-03-21 00:53:15,945] [pool-1-thread-12] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-12-Scene-2-P1-F2-02.czi: [testng] [2024-03-21 00:53:16,771] [pool-1-thread-10] Initializing /data/teresa/1minute30asecinterval2cycles807ms.czi: [testng] [2024-03-21 00:53:17,333] [pool-1-thread-5] Initializing /data/qa-7601/AxioCamMRc_Gray16_12ValidBits_1C_9Z.czi: [testng] [2024-03-21 00:53:17,516] [pool-1-thread-10] Initializing /data/vito/YFPbleach.czi: [testng] [2024-03-21 00:53:17,779] [pool-1-thread-12] Initializing /data/qa-7771/CervantesNew_10EuroCentCoinSpain_Comb_8PO_OfflinePyramide.czi: [testng] [2024-03-21 00:53:18,365] [pool-1-thread-4] Initializing /data/qa-7748/IP-Stitching-04.czi: [testng] [2024-03-21 00:53:19,070] [pool-1-thread-6] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/SIM_nicht verrechnet.czi: [testng] [2024-03-21 00:53:19,912] [pool-1-thread-10] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/LambdaCh10T3/LambdaCh10T3.czi: [testng] [2024-03-21 00:53:21,523] [pool-1-thread-5] Initializing /data/zeiss/zstd/8bit/ZEISS_LSM_512X_512Y_1Z_1T_1M_1C_8Bit_ZSTD0.czi: [testng] [2024-03-21 00:53:22,483] [pool-1-thread-6] Initializing /data/zeiss/zstd/LLS_50Z_1T_1M_1C/ZEISS_LLS_2048X_500Y_50Z_1T_1M_1C_16Bit_ZSTD1.czi: [testng] [2024-03-21 00:53:22,868] [pool-1-thread-5] Initializing /data/zeiss/zstd/ZEISS_LLS_2048X_500Y_374Z_1T_2M_2C_16Bit/ZEISS_LLS_2048X_500Y_374Z_1T_2M_2C_16Bit_Uncompressed.czi: [testng] [2024-03-21 00:53:23,244] [pool-1-thread-10] Initializing /data/bruno/Snap-8070.tif: [testng] [2024-03-21 00:53:24,594] [pool-1-thread-6] Initializing /data/nottingham/truncated-files/SpinalChord63x_1 SIM_Out.czi: [testng] [2024-03-21 00:53:24,852] [pool-1-thread-9] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/DCV/Amphioxus_2CH_ZStack_002.czi: [testng] [2024-03-21 00:53:26,009] [pool-1-thread-9] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-03-Scene-2-P3-D1-02.czi: [testng] [2024-03-21 00:53:27,683] [pool-1-thread-9] Initializing /data/zeiss/zstd/topography/ZEISS_Smartzoom5_1600X_1200Y_1Z_1T_1M_2C_RGB_Float32_Topography_ZSTD0.czi: [testng] [2024-03-21 00:53:27,779] [pool-1-thread-6] Initializing /data/zeiss/zstd/ZEISS_Smartzoom5_1600X_1200Y_1Z_1T_1M_2C_RGB_Float32_Topography/ZEISS_Smartzoom5_1600X_1200Y_1Z_1T_1M_2C_RGB_Float32_Topography_ZSTD0.czi: [testng] [2024-03-21 00:53:27,850] [pool-1-thread-5] Initializing /data/aaron/ticket-13186/Image1.czi: [testng] [2024-03-21 00:53:28,227] [pool-1-thread-5] Initializing /data/qa-4981/CZI linescanbug/Zenblue.png: [testng] [2024-03-21 00:53:29,038] [pool-1-thread-5] Initializing /data/qa-10448/L2.04day5_spot34_20150128_03.czi: [testng] [2024-03-21 00:53:33,252] [pool-1-thread-8] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/AiryscanCh3T3Z1/AiryscanCh3T3Z1.czi: [testng] [2024-03-21 00:53:33,376] [pool-1-thread-10] Initializing /data/qa-17229/unstrained fields.czi: [testng] [2024-03-21 00:53:33,578] [pool-1-thread-6] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/LambdaImage_Spectral channel extraction2CHannel.czi: [testng] [2024-03-21 00:53:33,617] [pool-1-thread-9] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Bleach/bleach.czi: [testng] [2024-03-21 00:53:33,730] [pool-1-thread-12] Initializing /data/bruno/Screen Shot 2013-09-25 at 4.36.26 PM.png: [testng] [2024-03-21 00:53:34,139] [pool-1-thread-9] Initializing /data/stephane/AO5.czi: [testng] [2024-03-21 00:53:36,725] [pool-1-thread-6] Initializing /data/bruno/Snap-8070.czi: [testng] [2024-03-21 00:53:37,275] [pool-1-thread-8] Initializing /data/qa-17539/2017_02_03_12wksWTQm3179.czi: [testng] [2024-03-21 00:53:45,625] [pool-1-thread-12] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-02-Scene-2-P1-E1-02.czi: [testng] [2024-03-21 00:53:47,466] [pool-1-thread-12] Initializing /data/vito/CalliphoraSalgld_Linearunmixing_FM4-64TMRE01.czi: [testng] [2024-03-21 00:53:47,585] [pool-1-thread-4] Initializing /data/martin/seeds 3D 01.czi: [testng] [2024-03-21 00:53:48,401] [pool-1-thread-6] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-03-Scene-1-P1-D1-01.czi: [testng] [2024-03-21 00:53:48,953] [pool-1-thread-4] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-31-Scene-2-P2-D6-02.czi: [testng] [2024-03-21 00:53:49,848] [pool-1-thread-12] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-39-Scene-2-P3-C8-02.czi: [testng] [2024-03-21 00:53:51,331] [pool-1-thread-6] Initializing /data/qa-7271/bioformats_multifile.czi: [testng] [2024-03-21 00:53:55,843] [pool-1-thread-4] Initializing /data/qa-17179/WT_calc_after24h_stitch_2.czi: [testng] [2024-03-21 00:53:56,690] [pool-1-thread-12] Initializing /data/zeiss/jpeg-xr/a)BF-1scene-nozstack-compression85%.czi: [testng] [2024-03-21 00:53:57,992] [pool-1-thread-9] Initializing /data/falvara/cell1-Zen2.6.czi: [testng] [2024-03-21 00:54:00,346] [pool-1-thread-10] Initializing /data/zeiss/samples/Pollen-Z-stack.czi: [testng] [2024-03-21 00:54:01,314] [pool-1-thread-10] Initializing /data/zeiss/samples/FluoCells_DCV-Teststack.czi: [testng] [2024-03-21 00:54:02,377] [pool-1-thread-10] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/LambdaImage_Linear unmixing.czi: [testng] [2024-03-21 00:54:03,372] [pool-1-thread-4] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-21-Scene-3-P2-C4-03.czi: [testng] [2024-03-21 00:54:04,765] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-18-Scene-3-P2-A3-03.czi: [testng] [2024-03-21 00:54:06,563] [pool-1-thread-4] Initializing /data/zeiss/zstd/ZEISS_LLS_2048X_500Y_50Z_1T_1M_1C_16Bit/ZEISS_LLS_2048X_500Y_50Z_1T_1M_1C_16Bit_ZSTD_1_from_Uncompressed.czi: [testng] [2024-03-21 00:54:06,706] [pool-1-thread-10] Initializing /data/vito/FRETAcceptorbleach1 lambda series.czi: [testng] [2024-03-21 00:54:07,258] [pool-1-thread-3] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/AiryscanCh3T1Z1/AiryscanCh3T1Z1.czi: [testng] [2024-03-21 00:54:10,807] [pool-1-thread-6] Initializing /data/zeiss/zstd/airyscan/AiryScan_680X680Y_16Bit_ZSTD-1_compressed_Quality-50.czi: [testng] [2024-03-21 00:54:11,398] [pool-1-thread-10] Initializing /data/zeiss/jpeg-xr/i_FL_3channel_2scenes_noZ_compression85%.czi: [testng] [2024-03-21 00:54:12,694] [pool-1-thread-3] Initializing /data/qa-10301/141016_OP43adult_Worm3_DAPI_head.czi: [testng] [2024-03-21 00:54:15,420] [pool-1-thread-4] Initializing /data/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Annotation/2C_7Z-04_Tinting_Annotations.czi: [testng] [2024-03-21 00:54:15,936] [pool-1-thread-6] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/ScanModes/LineScan_T80_Z25.czi: [testng] [2024-03-21 00:54:16,677] [pool-1-thread-6] Initializing /data/zeiss/zen-2012/Widefield/BPAE-Cells_63x_oversampled-3chZ(WF).czi: [testng] [2024-03-21 00:54:17,683] [pool-1-thread-4] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Bleach/bleach16bit.czi: [testng] [2024-03-21 00:54:19,096] [pool-1-thread-9] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/DCV/LysoTracker-DAPI_ZSTack_002.czi: [testng] [2024-03-21 00:54:19,443] [pool-1-thread-6] Initializing /data/zeiss/samples/NLO_ZStack_0013.czi: [testng] [2024-03-21 00:54:19,504] [pool-1-thread-4] Initializing /data/sebastian/fused/Overview_10X_DAPI_stitched_fused.czi: [testng] [2024-03-21 00:54:20,560] [pool-1-thread-6] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-32-Scene-2-P1-E6-02.czi: [testng] [2024-03-21 00:54:22,033] [pool-1-thread-9] Initializing /data/gh-3710/ROI 1 scene_2.czi: [testng] [2024-03-21 00:54:23,453] [pool-1-thread-3] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/AiryscanProcessedCh1T3Z1/AiryscanProcessedCh1T3Z1.czi: [testng] [2024-03-21 00:54:25,079] [pool-1-thread-6] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/ConfocalCh1T15Z1Bleaching2ROIs/ConfocalCh1T15Z1Bleaching2ROIs.czi: [testng] [2024-03-21 00:54:25,596] [pool-1-thread-7] Initializing /data/falvara/cell11-Zen2.3.czi: [testng] [2024-03-21 00:54:28,912] [pool-1-thread-3] Initializing /data/qa-4981/CZI linescanbug/Zenblack2.png: [testng] [2024-03-21 00:54:29,525] [pool-1-thread-6] Initializing /data/qa-4981/CZI linescanbug/metadata in zenblack.png: [testng] [2024-03-21 00:54:29,693] [pool-1-thread-3] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/ConfocalCh1T1Z3/ConfocalCh1T1Z3.czi: [testng] [2024-03-21 00:54:30,170] [pool-1-thread-6] Initializing /data/sebastian/OME-TIFF_ROI_Wrong_from_CZI/Screenshot_ZEN_with_ROIs.png: [testng] [2024-03-21 00:54:30,591] [pool-1-thread-6] Initializing /data/zeiss/zstd/LLS_1Z_50T_1M_2C/ZEISS_LLS_2048X_500Y_1Z_50T_1M_2C_16Bit_ZSTD1.czi: [testng] [2024-03-21 00:54:31,123] [pool-1-thread-3] Initializing /data/zeiss/zen-2012/CellObserver SD/LLC-PK1_TubX-emerald_H2B-mCherry-2chZ(SD).czi: [testng] [2024-03-21 00:54:32,462] [pool-1-thread-3] Initializing /data/gh-2377/20160425_BF_CZI.czi: [testng] [2024-03-21 00:54:37,154] [pool-1-thread-6] Initializing /data/qa-7276/Experiment-297.czi: [testng] [2024-03-21 00:54:42,331] [pool-1-thread-9] Initializing /data/qa-7891/bright_RGB.czi: [testng] [2024-03-21 00:54:42,439] [pool-1-thread-4] Initializing /data/vito/GFP_YFP lambda.czi: [testng] [2024-03-21 00:54:43,924] [pool-1-thread-4] Initializing /data/michael/multipos-z-time-lambda-tile.czi: [testng] [2024-03-21 00:54:57,227] [pool-1-thread-12] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/3D/Calcium_4D_002.czi: [testng] [2024-03-21 00:54:58,252] [pool-1-thread-12] Initializing /data/qa-27461/OCR-LySM-CPS-stitched.czi: [testng] [2024-03-21 00:54:59,259] [pool-1-thread-3] Initializing /data/zeiss/zstd/LLS_50Z_3T_1M_2C/ZEISS_LLS_2048X_500Y_50Z_3T_1M_2C_16Bit_ZSTD1.czi: [testng] [2024-03-21 00:54:59,925] [pool-1-thread-4] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/AiryscanCh1T3Z1/AiryscanCh1T3Z1.czi: [testng] [2024-03-21 00:55:01,802] [pool-1-thread-9] Initializing /data/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Annotation/2C_7Z-01_Tinting_Annotationen_MeasFeatures.czi: [testng] [2024-03-21 00:55:03,230] [pool-1-thread-4] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-14-Scene-2-P3-E3-02.czi: [testng] [2024-03-21 00:55:04,247] [pool-1-thread-7] Initializing /data/sebastian/12935/20160425_BF_CZI.czi: [testng] [2024-03-21 00:55:09,522] [pool-1-thread-3] Initializing /data/qa-17740/215_1626_DAPi_0_tdTom_0_0_TAM_hc_cor.czi: [testng] [2024-03-21 00:55:19,935] [pool-1-thread-6] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-38-Scene-1-P1-A7-01.czi: [testng] [2024-03-21 00:55:21,376] [pool-1-thread-4] Initializing /data/public/zenodo-10577186/2023_11_30__RecognizedCode-27-Background subtraction-08.czi: [testng] [2024-03-21 00:55:30,653] [pool-1-thread-9] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/AiryscanProcessedCh1T3Z5/AiryscanProcessedCh1T3Z5.czi: [testng] [2024-03-21 00:55:31,588] [pool-1-thread-6] Initializing /data/zeiss/zstd/LLS_1Z_50T_1M_2C/ZEISS_LLS_2048X_500Y_1Z_50T_1M_2C_16Bit_Uncompressed.czi: [testng] [2024-03-21 00:55:32,550] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-28-Scene-2-P3-A5-02.czi: [testng] [2024-03-21 00:55:34,249] [pool-1-thread-9] Initializing /data/nottingham/incorrect-colors/SpinalChord63x_1 SIMcrop_Structured Illumination.czi: [testng] [2024-03-21 00:55:35,371] [pool-1-thread-10] Initializing /data/vito/36bit.czi: [testng] [2024-03-21 00:55:35,938] [pool-1-thread-7] Initializing /data/sebastian/october-2016/CZI_Test_20x20Tile.czi: [testng] [2024-03-21 00:55:37,004] [pool-1-thread-6] Initializing /data/michael-porter/EB01 - Airyscan Fast SR 20x_Airyscan Processing.czi: [testng] [2024-03-21 00:55:39,558] [pool-1-thread-9] Initializing /data/qa-17711/2015_08_21__16_09__0954.czi: [testng] [2024-03-21 00:55:40,144] [pool-1-thread-10] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/ConfocalCh3T1Z54BigFrameSize/ConfocalCh3T1Z54BigFrameSize.czi: [testng] [2024-03-21 00:55:46,321] [pool-1-thread-6] Initializing /data/zeiss/zen-2012/Young_mouse.czi: [testng] [2024-03-21 00:55:49,351] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-32-Scene-1-P3-E6-01.czi: [testng] [2024-03-21 00:55:51,459] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-33-Scene-2-P3-F6-02.czi: [testng] [2024-03-21 00:55:54,083] [pool-1-thread-10] Initializing /data/qa-27169/226-0903_wt_DAPI_0_DsRED_tdT_0_CB-Scene-1-ScanRegion0.czi: [testng] [2024-03-21 00:56:01,186] [pool-1-thread-2] Initializing /data/nottingham/truncated-files/Image 18_Out.czi: [testng] [2024-03-21 00:56:04,512] [pool-1-thread-2] Initializing /data/public/zenodo-10577186/2023_11_30__RecognizedCode-27.czi: [testng] [2024-03-21 00:56:15,676] [pool-1-thread-5] Initializing /data/qa-33776/210412 DOPC-Chol 1-1 STAR600 sFCS.czi: [testng] [2024-03-21 00:57:18,420] [pool-1-thread-8] Initializing /data/gh-2791/testwell96_withAttachment_S1-3.czi: [testng] [2024-03-21 00:57:19,760] [pool-1-thread-7] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-28-Scene-3-P2-A5-03.czi: [testng] [2024-03-21 00:57:21,808] [pool-1-thread-7] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/3D/Drosophila_Z_001_Maximumintensityprojection.czi: [testng] [2024-03-21 00:57:22,370] [pool-1-thread-7] Initializing /data/zeiss/zen-2012/Axio Scan.Z1/Intestine_3color_RAC.czi: [testng] [2024-03-21 00:57:24,833] [pool-1-thread-4] Initializing /data/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Unspecified/Pollen-Z-stack.czi: [testng] [2024-03-21 00:57:25,745] [pool-1-thread-4] Initializing /data/qa-11007/SCC47 EGF647 LAMP1488 - EGF only 3D with 405_PALM.czi: [testng] [2024-03-21 00:57:28,526] [pool-1-thread-8] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-08-Scene-3-P2-B2-03.czi: [testng] [2024-03-21 00:57:30,238] [pool-1-thread-8] Initializing /data/vito/kaede5lsm.czi: [testng] [2024-03-21 00:57:31,143] [pool-1-thread-8] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-13-Scene-1-P3-F3-01.czi: [testng] [2024-03-21 00:57:32,033] [pool-1-thread-12] Initializing /data/zeiss/zen-2012/ath5-gfp--his-rfp_Dual Side Fusion_FileBasedRegistration_Subset.czi: [testng] [2024-03-21 00:57:44,325] [pool-1-thread-4] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/ConfocalCh3T1Z3P2/ConfocalCh3T1Z3P2.czi: [testng] [2024-03-21 00:57:45,217] [pool-1-thread-8] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-11-Scene-2-P1-E2-02.czi: [testng] [2024-03-21 00:57:46,021] [pool-1-thread-6] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-36-Scene-1-P3-D7-01.czi: [testng] [2024-03-21 00:57:47,437] [pool-1-thread-12] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-33-Scene-3-P2-F6-03.czi: [testng] [2024-03-21 00:57:48,661] [pool-1-thread-4] Initializing /data/zeiss/zstd/ZEISS_LLS_2048X_500Y_50Z_1T_1M_2C_16Bit/ZEISS_LLS_2048X_500Y_50Z_1T_1M_2C_16Bit_ZSTD0.czi: [testng] [2024-03-21 00:57:48,964] [pool-1-thread-8] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/ConfocalCh1T3Z1/ConfocalCh1T3Z1.czi: [testng] [2024-03-21 00:57:49,233] [pool-1-thread-6] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-32-Scene-3-P2-E6-03.czi: [testng] [2024-03-21 00:57:50,541] [pool-1-thread-12] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-42-Scene-1-P1-F8-01.czi: [testng] [2024-03-21 00:57:51,781] [pool-1-thread-6] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/PALM/01PSCFP2_Subset50_Subset.czi: [testng] [2024-03-21 00:57:52,154] [pool-1-thread-8] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-09-Scene-2-P1-C2-02.czi: [testng] [2024-03-21 00:57:53,376] [pool-1-thread-12] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-27-Scene-1-P3-D5-01.czi: [testng] [2024-03-21 00:57:54,197] [pool-1-thread-4] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-27-Scene-3-P2-D5-03.czi: [testng] [2024-03-21 00:57:55,057] [pool-1-thread-6] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Misc/positions16bit.czi: [testng] [2024-03-21 00:57:55,527] [pool-1-thread-8] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-39-Scene-3-P2-C8-03.czi: [testng] [2024-03-21 00:57:56,856] [pool-1-thread-12] Initializing /data/qa-4981/CZI linescanbug/Zenblack1.png: [testng] [2024-03-21 00:57:56,916] [pool-1-thread-4] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Misc/Channel-TimeSeries-Marker-Start-Trigger-End-Time-With-Pause.czi: [testng] [2024-03-21 00:57:57,093] [pool-1-thread-6] Initializing /data/zeiss/zen-2012/VivaTome/Mouse_kidney_VivaTome-1chTZ.czi: [testng] [2024-03-21 00:57:57,305] [pool-1-thread-10] Initializing /data/imagic/Code sample good thumbnail.jpg: [testng] [2024-03-21 00:57:57,466] [pool-1-thread-8] Initializing /data/mette/Mc_04-Feb-2014_Angle1.czi: [testng] [2024-03-21 00:57:59,099] [pool-1-thread-12] Initializing /data/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Unspecified/C195 Collate 3 A.czi: [testng] [2024-03-21 00:58:00,335] [pool-1-thread-4] Initializing /data/qa-10431/KO100_1E.czi: [testng] [2024-03-21 00:58:01,566] [pool-1-thread-6] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/PALM/04Lck10-tdEosts_Subset_Palm.czi: [testng] [2024-03-21 00:58:01,685] [pool-1-thread-12] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Misc/timeserie16bit.czi: [testng] [2024-03-21 00:58:01,787] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-38-Scene-2-P3-A7-02.czi: [testng] [2024-03-21 00:58:02,819] [pool-1-thread-6] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/LambdaCh10T1/LambdaCh10T1.czi: [testng] [2024-03-21 00:58:03,366] [pool-1-thread-8] Initializing /data/zeiss/zstd/ZEISS_LLS_2048X_500Y_50Z_3T_1M_1C_16Bit/ZEISS_LLS_2048X_500Y_50Z_3T_1M_1C_16Bit_ZSTD0.czi: [testng] [2024-03-21 00:58:03,694] [pool-1-thread-12] Initializing /data/zeiss/zstd/LLS_50Z_3T_1M_1C/ZEISS_LLS_2048X_500Y_50Z_3T_1M_1C_16Bit_Uncompressed.czi: [testng] [2024-03-21 00:58:04,266] [pool-1-thread-10] Initializing /data/sebastian/HeLa-Reggie-GFP_ZT_fast2_bin-CI-measured-PSF.czi: [testng] [2024-03-21 00:58:05,379] [pool-1-thread-6] Initializing /data/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Unspecified/Inside4D_demo_image.czi: [testng] [2024-03-21 00:58:06,180] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-31-Scene-3-P3-D6-03.czi: [testng] [2024-03-21 00:58:07,005] [pool-1-thread-8] Initializing /data/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Unspecified/Longterm-Timelapse_Buters.czi: [testng] [Fatal Error] :11:3: The element type "METADATA" must be terminated by the matching end-tag "</METADATA>". [testng] [2024-03-21 00:58:09,149] [pool-1-thread-12] Initializing /data/imagic/Code sample wrong thumbnail.jpg: [testng] [2024-03-21 00:58:09,485] [pool-1-thread-6] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-40-Scene-2-P2-D8-02.czi: [testng] [2024-03-21 00:58:10,351] [pool-1-thread-7] Initializing /data/qa-11375/haptomonad.czi: [testng] [Fatal Error] :11:3: The element type "METADATA" must be terminated by the matching end-tag "</METADATA>". [testng] [Fatal Error] :11:3: The element type "METADATA" must be terminated by the matching end-tag "</METADATA>". [testng] [Fatal Error] :11:3: The element type "METADATA" must be terminated by the matching end-tag "</METADATA>". [testng] [Fatal Error] :11:3: The element type "METADATA" must be terminated by the matching end-tag "</METADATA>". [testng] [Fatal Error] :11:3: The element type "METADATA" must be terminated by the matching end-tag "</METADATA>". [testng] [Fatal Error] :11:3: The element type "METADATA" must be terminated by the matching end-tag "</METADATA>". [testng] [2024-03-21 00:58:11,288] [pool-1-thread-10] Initializing /data/zeiss/zstd/ZEISS_LLS_2048X_500Y_1Z_50T_1M_2C_16Bit/ZEISS_LLS_2048X_500Y_1Z_50T_1M_2C_16Bit_ZSTD0.czi: [testng] [2024-03-21 00:58:11,551] [pool-1-thread-8] Initializing /data/zeiss/zstd/LLS_1Z_50T_1M_1C/ZEISS_LLS_2048X_500Y_1Z_50T_1M_1C_16Bit_ZSTD1.czi: [testng] [2024-03-21 00:58:12,272] [pool-1-thread-12] Initializing /data/olivier/EXP12 1 CD31 B.czi: [testng] [2024-03-21 00:58:12,414] [pool-1-thread-6] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-15-Scene-3-P2-D3-03.czi: [testng] [2024-03-21 00:58:13,430] [pool-1-thread-7] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-07-Scene-1-P2-A2-01.czi: [testng] [2024-03-21 00:58:15,345] [pool-1-thread-7] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/Lambda1.czi: [testng] [2024-03-21 00:58:15,465] [pool-1-thread-6] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/Crop-Tilescan.czi: [testng] [2024-03-21 00:58:15,580] [pool-1-thread-12] Initializing /data/gh-3884/test-plate.czi: [testng] [2024-03-21 00:58:20,156] [pool-1-thread-8] Initializing /data/zeiss/zstd/LLS_374Z_1T_2M_1C/ZEISS_LLS_2048X_500Y_374Z_1T_2M_1C_16Bit_Uncompressed.czi: [testng] [2024-03-21 00:58:25,177] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-26-Scene-1-P3-E5-01.czi: [testng] [2024-03-21 00:58:26,614] [pool-1-thread-7] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-36-Scene-2-P2-D7-02.czi: [testng] [2024-03-21 00:58:28,865] [pool-1-thread-6] Initializing /data/qa-4981/CZI linescanbug/f01.lsm: [testng] [2024-03-21 00:58:29,047] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-20-Scene-1-P3-B4-01.czi: [testng] [2024-03-21 00:58:30,237] [pool-1-thread-7] Initializing /data/imagic/1_WF_MolProbesKidney.czi: [testng] [2024-03-21 00:58:31,272] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-06-Scene-3-P2-A1-03.czi: [testng] [2024-03-21 00:58:32,319] [pool-1-thread-8] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-24-Scene-1-P1-F4-01.czi: [testng] [2024-03-21 00:58:33,863] [pool-1-thread-7] Initializing /data/zeiss/zen-2012/Kidney_RAC_3color.czi: [testng] [2024-03-21 00:58:37,572] [pool-1-thread-6] Initializing /data/zeiss/zstd/ZEISS_LLS_2048X_500Y_50Z_1T_1M_1C_16Bit/ZEISS_LLS_2048X_500Y_50Z_1T_1M_1C_16Bit_Uncompressed.czi: [testng] [2024-03-21 00:58:38,473] [pool-1-thread-10] Initializing /data/greg/Experiment-519-export.czi: [testng] [2024-03-21 00:58:40,624] [pool-1-thread-8] Initializing /data/qa-17192/Conv 2 3 colors BandW.czi: [testng] [2024-03-21 00:58:41,629] [pool-1-thread-8] Initializing /data/falvara/cell4-Zen2.6.czi: [testng] [2024-03-21 00:58:48,925] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-09-Scene-3-P3-C2-03.czi: [testng] [2024-03-21 00:58:50,093] [pool-1-thread-6] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/Image 5_PALM_verrechnet.czi: [testng] [2024-03-21 00:58:50,369] [pool-1-thread-4] Initializing /data/jianguo/03-01-2014_Barcode-0541-1.czi: [testng] [2024-03-21 00:59:12,846] [pool-1-thread-2] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-02-Scene-3-P3-E1-03.czi: [testng] [2024-03-21 00:59:13,804] [pool-1-thread-3] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-08-Scene-1-P1-B2-01.czi: [testng] [2024-03-21 00:59:14,699] [pool-1-thread-9] Initializing /data/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Annotation/2C_7Z-01_Tinting_Annotationen_MeasFeatures_V03_ohneFocusPos.czi: [testng] [2024-03-21 00:59:15,560] [pool-1-thread-10] Initializing /data/qa-7601/AxioCamICc5_Gray16_12ValidBits_1C_8Z.czi: [testng] [2024-03-21 00:59:15,973] [pool-1-thread-2] Initializing /data/wimpomp/zstd/beads.czi: [testng] [2024-03-21 00:59:16,243] [pool-1-thread-6] Initializing /data/zeiss/zstd/LLS_50Z_1T_1M_2C/ZEISS_LLS_2048X_500Y_50Z_1T_1M_2C_16Bit_ZSTD1.czi: [testng] [2024-03-21 00:59:17,010] [pool-1-thread-11] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/AiryscanCh3T3Z5/AiryscanCh3T3Z5.czi: [testng] [2024-03-21 00:59:26,946] [pool-1-thread-3] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-09-Scene-1-P2-C2-01.czi: [testng] [2024-03-21 00:59:28,694] [pool-1-thread-9] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-37-Scene-2-P2-B7-02.czi: [testng] [2024-03-21 00:59:29,475] [pool-1-thread-2] Initializing /data/public/zenodo-10577186/2023_11_30__RecognizedCode-27-Deconvolution (defaults)-11.czi: [testng] [2024-03-21 00:59:36,063] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-12-Scene-3-P3-F2-03.czi: [testng] [2024-03-21 00:59:37,068] [pool-1-thread-3] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-42-Scene-3-P2-F8-03.czi: [testng] [2024-03-21 00:59:37,980] [pool-1-thread-6] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/DCV_LSM/Amphioxus_2CH_ZStack_002.czi: [testng] [2024-03-21 00:59:39,082] [pool-1-thread-9] Initializing /data/qa-17192/Convalaria 2 channel.czi: [testng] [2024-03-21 00:59:39,373] [pool-1-thread-11] Initializing /data/nicholas-trahearn/example.czi: [testng] [2024-03-21 00:59:42,667] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-35-Scene-1-P3-E7-01.czi: [testng] [2024-03-21 00:59:44,001] [pool-1-thread-3] Initializing /data/qa-11361/01_01_Out.czi: [testng] [2024-03-21 00:59:45,095] [pool-1-thread-6] Initializing /data/qa-4981/CZI linescanbug/f01.czi: [testng] [2024-03-21 00:59:45,472] [pool-1-thread-9] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-29-Scene-2-P2-A6-02.czi: [testng] [2024-03-21 00:59:47,741] [pool-1-thread-10] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/ConfocalCh3T3Z3P2/ConfocalCh3T3Z3P2.czi: [testng] [2024-03-21 00:59:49,081] [pool-1-thread-3] Initializing /data/qa-17199/fails-to-open.czi: [testng] [2024-03-21 00:59:49,463] [pool-1-thread-9] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-30-Scene-2-P1-C6-02.czi: [testng] [2024-03-21 00:59:52,001] [pool-1-thread-6] Initializing /data/qa-7601/AxioCamMRc_bgr48_36ValidBits_1C_9Z.czi: [testng] [2024-03-21 00:59:52,536] [pool-1-thread-3] Initializing /data/zeiss/zstd/ZEISS_LLS_2048X_500Y_374Z_1T_2M_2C_16Bit/ZEISS_LLS_2048X_500Y_374Z_1T_2M_2C_16Bit_ZSTD0_from_Uncompressed.czi: [testng] [2024-03-21 01:00:04,252] [pool-1-thread-10] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/HDR_Illu.czi: [testng] [2024-03-21 01:00:04,403] [pool-1-thread-9] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Misc/Maiglckchen.czi: [testng] [2024-03-21 01:00:06,901] [pool-1-thread-8] Initializing /data/zeiss/jpeg-xr/g_FL_1channel_noZ_compression85%.czi: [testng] [2024-03-21 01:00:10,592] [pool-1-thread-7] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/3D/Z-Stack2CHPRO.czi: [testng] [2024-03-21 01:00:10,793] [pool-1-thread-10] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/ConfocalCh3T1Z3/ConfocalCh3T1Z3.czi: [testng] [2024-03-21 01:00:10,987] [pool-1-thread-9] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-Scene-2-P1-F1-02.czi: [testng] [2024-03-21 01:00:11,723] [pool-1-thread-6] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/TileZstack5_NichtGestitchen.czi: [testng] [2024-03-21 01:00:12,031] [pool-1-thread-3] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/SIM verrechnet.czi: [testng] [2024-03-21 01:00:12,978] [pool-1-thread-7] Initializing /data/qa-11007/SCC47 EGF647 LAMP1488 - LAMP1 only 3D with 405 2_PALM - KAthrin.czi: [testng] [2024-03-21 01:00:13,401] [pool-1-thread-9] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-14-Scene-3-P2-E3-03.czi: [testng] [2024-03-21 01:00:14,290] [pool-1-thread-10] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Misc/ztacktimeposition16bit.czi: [testng] [2024-03-21 01:00:15,133] [pool-1-thread-6] Initializing /data/qa-16882/allSeriesContainSignal.czi: [testng] [2024-03-21 01:00:16,115] [pool-1-thread-9] Initializing /data/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Annotation/2C_7Z-01_Tinting_Annotationen_MeasFeatures_V03.czi: [testng] [2024-03-21 01:00:16,583] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-10-Scene-2-P3-D2-02.czi: [testng] [2024-03-21 01:00:17,738] [pool-1-thread-4] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-38-Scene-3-P2-A7-03.czi: [testng] [2024-03-21 01:00:19,044] [pool-1-thread-3] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-34-Scene-3-P3-F7-03.czi: [testng] [2024-03-21 01:00:20,305] [pool-1-thread-7] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/Timeserie_GraphikElemente.czi: [testng] [2024-03-21 01:00:20,541] [pool-1-thread-9] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-04-Scene-2-P2-C1-02.czi: [testng] [2024-03-21 01:00:21,371] [pool-1-thread-4] Initializing /data/zeiss/jpeg-xr/f)BF-1scene-nozstack-compression50%.czi: [testng] [2024-03-21 01:00:22,529] [pool-1-thread-10] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/ScanModes/LineScan_T3500.czi: [testng] [2024-03-21 01:00:22,992] [pool-1-thread-3] Initializing /data/qa-17711/2017_05_04__08_59__0002.czi: [testng] [2024-03-21 01:00:24,320] [pool-1-thread-6] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/Misc/Channel-TimeSeries-Marker-Start-Trigger-End-Time-With-Pause-Bleaching-Dummy.czi: [testng] [2024-03-21 01:00:24,603] [pool-1-thread-7] Initializing /data/zeiss/dvds/wf-disk1/CZI Test WF/CZI-Example Data WF/Tiles/Cross_12M_3x4tiles_5%_Meander.czi: [testng] [2024-03-21 01:00:25,182] [pool-1-thread-10] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-15-Scene-2-P1-D3-02.czi: [testng] [2024-03-21 01:00:26,562] [pool-1-thread-9] Initializing /data/sebastian/fused/Overview_10X_DAPI_stitched.czi: [testng] [2024-03-21 01:00:28,017] [pool-1-thread-6] Initializing /data/zeiss/dvds/lsm-disk1/CZI-Example Data LSM/DCV/NeuronsStack.czi: [testng] [2024-03-21 01:00:28,674] [pool-1-thread-10] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/MT-Tilescan2-3unstitched.czi: [testng] [2024-03-21 01:00:30,253] [pool-1-thread-10] Initializing /data/vito/lena 10k x 10k bnw 16bit.czi: [testng] [2024-03-21 01:00:30,982] [pool-1-thread-6] Initializing /data/zeiss/ZEN 2.1 black LSM 880 -May 2015/WF.czi: [testng] [2024-03-21 01:00:31,534] [pool-1-thread-7] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-26-Scene-2-P1-E5-02.czi: [testng] [2024-03-21 01:00:33,007] [pool-1-thread-6] Initializing /data/zeiss/ZEN 2.1 blue LSM 800 -May2015/AiryscanProcessedCh1T1Z1/AiryscanProcessedCh1T1Z1.czi: [testng] [2024-03-21 01:00:33,960] [pool-1-thread-7] Initializing /data/public/idr0011/Plate1-Blue-A_TS-Stinger/Plate1-Blue-A-26-Scene-3-P2-E5-03.czi: FATAL: command execution failed java.nio.channels.ClosedChannelException at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer.onReadClosed(ChannelApplicationLayer.java:241) at org.jenkinsci.remoting.protocol.ApplicationLayer.onRecvClosed(ApplicationLayer.java:221) at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.onRecvClosed(ProtocolStack.java:825) at org.jenkinsci.remoting.protocol.FilterLayer.onRecvClosed(FilterLayer.java:289) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.onRecvClosed(SSLEngineFilterLayer.java:177) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.switchToNoSecure(SSLEngineFilterLayer.java:279) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processWrite(SSLEngineFilterLayer.java:501) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processQueuedWrites(SSLEngineFilterLayer.java:244) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doSend(SSLEngineFilterLayer.java:196) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doCloseSend(SSLEngineFilterLayer.java:209) at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.doCloseSend(ProtocolStack.java:793) at org.jenkinsci.remoting.protocol.ApplicationLayer.doCloseWrite(ApplicationLayer.java:172) at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.closeWrite(ChannelApplicationLayer.java:343) at hudson.remoting.Channel.close(Channel.java:1497) at hudson.remoting.Channel.close(Channel.java:1450) at hudson.slaves.SlaveComputer.closeChannel(SlaveComputer.java:943) at hudson.slaves.SlaveComputer.kill(SlaveComputer.java:909) at hudson.model.AbstractCIBase.killComputer(AbstractCIBase.java:97) at jenkins.model.Jenkins.lambda$_cleanUpDisconnectComputers$11(Jenkins.java:3785) at hudson.model.Queue._withLock(Queue.java:1401) at hudson.model.Queue.withLock(Queue.java:1275) at jenkins.model.Jenkins._cleanUpDisconnectComputers(Jenkins.java:3781) at jenkins.model.Jenkins.cleanUp(Jenkins.java:3662) at hudson.WebAppMain.contextDestroyed(WebAppMain.java:374) at org.eclipse.jetty.server.handler.ContextHandler.callContextDestroyed(ContextHandler.java:1059) at org.eclipse.jetty.servlet.ServletContextHandler.callContextDestroyed(ServletContextHandler.java:636) at org.eclipse.jetty.server.handler.ContextHandler.contextDestroyed(ContextHandler.java:1016) at org.eclipse.jetty.servlet.ServletHandler.doStop(ServletHandler.java:306) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.security.SecurityHandler.doStop(SecurityHandler.java:412) at org.eclipse.jetty.security.ConstraintSecurityHandler.doStop(ConstraintSecurityHandler.java:413) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.server.session.SessionHandler.doStop(SessionHandler.java:497) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.server.handler.ContextHandler.stopContext(ContextHandler.java:1039) at org.eclipse.jetty.servlet.ServletContextHandler.stopContext(ServletContextHandler.java:399) at org.eclipse.jetty.webapp.WebAppContext.stopContext(WebAppContext.java:1311) at org.eclipse.jetty.server.handler.ContextHandler.doStop(ContextHandler.java:1087) at org.eclipse.jetty.servlet.ServletContextHandler.doStop(ServletContextHandler.java:312) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.server.Server.doStop(Server.java:517) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at winstone.Launcher.shutdown(Launcher.java:442) at winstone.ShutdownHook.run(ShutdownHook.java:28) Caused: java.io.IOException: Backing channel 'JNLP4-connect connection from merge-ci-docker-1.merge-ci_omero-network/172.29.0.12:54364' is disconnected. at hudson.remoting.RemoteInvocationHandler.channelOrFail(RemoteInvocationHandler.java:215) at hudson.remoting.RemoteInvocationHandler.invoke(RemoteInvocationHandler.java:285) at jdk.proxy2/jdk.proxy2.$Proxy141.isAlive(Unknown Source) at hudson.Launcher$RemoteLauncher$ProcImpl.isAlive(Launcher.java:1212) at hudson.Launcher$RemoteLauncher$ProcImpl.join(Launcher.java:1204) at hudson.tasks.CommandInterpreter.join(CommandInterpreter.java:195) at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:145) at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:92) at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20) at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:818) at hudson.model.Build$BuildExecution.build(Build.java:199) at hudson.model.Build$BuildExecution.doRun(Build.java:164) at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:526) at hudson.model.Run.execute(Run.java:1895) at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:44) at hudson.model.ResourceController.execute(ResourceController.java:101) at hudson.model.Executor.run(Executor.java:442) FATAL: Unable to delete script file /tmp/jenkins17076038277828692628.sh java.nio.channels.ClosedChannelException at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer.onReadClosed(ChannelApplicationLayer.java:241) at org.jenkinsci.remoting.protocol.ApplicationLayer.onRecvClosed(ApplicationLayer.java:221) at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.onRecvClosed(ProtocolStack.java:825) at org.jenkinsci.remoting.protocol.FilterLayer.onRecvClosed(FilterLayer.java:289) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.onRecvClosed(SSLEngineFilterLayer.java:177) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.switchToNoSecure(SSLEngineFilterLayer.java:279) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processWrite(SSLEngineFilterLayer.java:501) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processQueuedWrites(SSLEngineFilterLayer.java:244) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doSend(SSLEngineFilterLayer.java:196) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doCloseSend(SSLEngineFilterLayer.java:209) at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.doCloseSend(ProtocolStack.java:793) at org.jenkinsci.remoting.protocol.ApplicationLayer.doCloseWrite(ApplicationLayer.java:172) at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.closeWrite(ChannelApplicationLayer.java:343) at hudson.remoting.Channel.close(Channel.java:1497) at hudson.remoting.Channel.close(Channel.java:1450) at hudson.slaves.SlaveComputer.closeChannel(SlaveComputer.java:943) at hudson.slaves.SlaveComputer.kill(SlaveComputer.java:909) at hudson.model.AbstractCIBase.killComputer(AbstractCIBase.java:97) at jenkins.model.Jenkins.lambda$_cleanUpDisconnectComputers$11(Jenkins.java:3785) at hudson.model.Queue._withLock(Queue.java:1401) at hudson.model.Queue.withLock(Queue.java:1275) at jenkins.model.Jenkins._cleanUpDisconnectComputers(Jenkins.java:3781) at jenkins.model.Jenkins.cleanUp(Jenkins.java:3662) at hudson.WebAppMain.contextDestroyed(WebAppMain.java:374) at org.eclipse.jetty.server.handler.ContextHandler.callContextDestroyed(ContextHandler.java:1059) at org.eclipse.jetty.servlet.ServletContextHandler.callContextDestroyed(ServletContextHandler.java:636) at org.eclipse.jetty.server.handler.ContextHandler.contextDestroyed(ContextHandler.java:1016) at org.eclipse.jetty.servlet.ServletHandler.doStop(ServletHandler.java:306) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.security.SecurityHandler.doStop(SecurityHandler.java:412) at org.eclipse.jetty.security.ConstraintSecurityHandler.doStop(ConstraintSecurityHandler.java:413) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.server.session.SessionHandler.doStop(SessionHandler.java:497) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.server.handler.ContextHandler.stopContext(ContextHandler.java:1039) at org.eclipse.jetty.servlet.ServletContextHandler.stopContext(ServletContextHandler.java:399) at org.eclipse.jetty.webapp.WebAppContext.stopContext(WebAppContext.java:1311) at org.eclipse.jetty.server.handler.ContextHandler.doStop(ContextHandler.java:1087) at org.eclipse.jetty.servlet.ServletContextHandler.doStop(ServletContextHandler.java:312) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.server.Server.doStop(Server.java:517) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at winstone.Launcher.shutdown(Launcher.java:442) at winstone.ShutdownHook.run(ShutdownHook.java:28) Caused: hudson.remoting.ChannelClosedException: Channel "hudson.remoting.Channel@4b3641b6:JNLP4-connect connection from merge-ci-docker-1.merge-ci_omero-network/172.29.0.12:54364": Remote call on JNLP4-connect connection from merge-ci-docker-1.merge-ci_omero-network/172.29.0.12:54364 failed. The channel is closing down or has closed down at hudson.remoting.Channel.call(Channel.java:996) at hudson.FilePath.act(FilePath.java:1230) at hudson.FilePath.act(FilePath.java:1219) at hudson.FilePath.delete(FilePath.java:1766) at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:163) at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:92) at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20) at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:818) at hudson.model.Build$BuildExecution.build(Build.java:199) at hudson.model.Build$BuildExecution.doRun(Build.java:164) at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:526) at hudson.model.Run.execute(Run.java:1895) at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:44) at hudson.model.ResourceController.execute(ResourceController.java:101) at hudson.model.Executor.run(Executor.java:442) Build step 'Execute shell' marked build as failure Finished: FAILURE