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Started by upstream project "BIOFORMATS-test-repo" build number 68 originally caused by: Started by upstream project "Trigger" build number 76 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins5620640665878469825.sh + '[' targa = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_10179_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:27:26,630 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:27:26,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:27:26,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:27:26,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:27:26,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:27:26,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:27:26,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:27:26,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:27:26,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:27:26,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:27:26,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:27:26,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:27:26,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:27:26,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:27:26,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:27:26,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:27:26,818 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:27:26,818 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:27:26,819 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:27:26,819 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:27:26,819 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:27:26,820 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:27:26,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-19 01:27:26,829] [main] java.version = 17.0.2 [testng] 01:27:26,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:27:26,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:26,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-19_01-27-26.log] [testng] 01:27:26,874 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-05-19 01:27:26,876] [main] testng.directory = /data [testng] [2024-05-19 01:27:26,876] [main] testng.configDirectory = /config [testng] [2024-05-19 01:27:26,885] [main] testng.multiplier = 1.0 [testng] [2024-05-19 01:27:26,886] [main] testng.in-memory = false [testng] [2024-05-19 01:27:26,886] [main] testng.allow-missing = false [testng] [2024-05-19 01:27:26,886] [main] user.language = en [testng] [2024-05-19 01:27:26,886] [main] user.country = ${user.country} [testng] [2024-05-19 01:27:26,886] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-19 01:27:27,214] [main] ---------------------------------------- [testng] [2024-05-19 01:27:27,214] [main] Total files: 21 [testng] [2024-05-19 01:27:27,214] [main] Scan time: 0.328 s (15 ms/file) [testng] [2024-05-19 01:27:27,215] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-19 01:27:27,921] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA: [testng] 01:27:27,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:27:27,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-19_01-27-27.log] [testng] 01:27:27,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a3fafe5 - End of configuration. [testng] [2024-05-19 01:27:27,940] [pool-1-thread-12] Initializing /data/samples/CTC24.TGA: [testng] 01:27:27,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:27:27,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-19_01-27-27.log] [testng] 01:27:27,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f51bdec - End of configuration. [testng] [2024-05-19 01:27:27,993] [pool-1-thread-11] Initializing /data/samples/UCM8.TGA: [testng] 01:27:27,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:27:27,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:27,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-19_01-27-27.log] [testng] 01:27:27,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a819569 - End of configuration. [testng] [2024-05-19 01:27:28,005] [pool-1-thread-10] Initializing /data/samples/FLAG_B16.TGA: [testng] 01:27:28,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:27:28,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:28,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-19_01-27-28.log] [testng] 01:27:28,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31caf268 - End of configuration. [testng] [2024-05-19 01:27:28,017] [pool-1-thread-9] Initializing /data/samples/XING_T16.TGA: [testng] 01:27:28,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:27:28,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:28,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-19_01-27-28.log] [testng] 01:27:28,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ce37081 - End of configuration. [testng] [2024-05-19 01:27:28,029] [pool-1-thread-8] Initializing /data/samples/UBW8.TGA: [testng] 01:27:28,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:27:28,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:28,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-19_01-27-28.log] [testng] 01:27:28,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@132c2ea0 - End of configuration. [testng] [2024-05-19 01:27:28,040] [pool-1-thread-7] Initializing /data/samples/MARBLES.TGA: [testng] 01:27:28,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:27:28,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:28,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-19_01-27-28.log] [testng] 01:27:28,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40b3d8ad - End of configuration. [testng] [2024-05-19 01:27:28,058] [pool-1-thread-6] Initializing /data/samples/UTC32.TGA: [testng] 01:27:28,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:27:28,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:28,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-19_01-27-28.log] [testng] 01:27:28,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4505cc7 - End of configuration. [testng] [2024-05-19 01:27:28,069] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA: [testng] 01:27:28,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:27:28,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:28,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-19_01-27-28.log] [testng] 01:27:28,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b6d5b38 - End of configuration. [testng] [2024-05-19 01:27:28,079] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA: [testng] 01:27:28,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:27:28,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:28,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-19_01-27-28.log] [testng] 01:27:28,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd9a693 - End of configuration. [testng] [2024-05-19 01:27:28,092] [pool-1-thread-3] Initializing /data/samples/XING_B32.TGA: [testng] 01:27:28,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:27:28,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:28,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-19_01-27-28.log] [testng] 01:27:28,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40763c5f - End of configuration. [testng] [2024-05-19 01:27:28,106] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] 01:27:28,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:27:28,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:28,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-19_01-27-28.log] [testng] 01:27:28,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@403ea216 - End of configuration. [testng] [2024-05-19 01:27:29,861] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA: [testng] [2024-05-19 01:27:29,875] [pool-1-thread-8] Initializing /data/samples/UTC24.TGA: [testng] [2024-05-19 01:27:29,883] [pool-1-thread-11] Initializing /data/samples/CTC16.TGA: [testng] [2024-05-19 01:27:29,894] [pool-1-thread-5] Initializing /data/samples/FLAG_B32.TGA: [testng] [2024-05-19 01:27:29,907] [pool-1-thread-4] Initializing /data/samples/XING_B24.TGA: [testng] [2024-05-19 01:27:29,919] [pool-1-thread-12] Initializing /data/samples/XING_B16.TGA: [testng] [2024-05-19 01:27:29,934] [pool-1-thread-9] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-05-19 01:27:29,948] [pool-1-thread-3] Initializing /data/samples/FLAG_T16.TGA: [testng] [2024-05-19 01:27:29,961] [pool-1-thread-2] Initializing /data/samples/XING_T32.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS