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Started by upstream project "BIOFORMATS-test-repo" build number 7 originally caused by: Started by upstream project "Trigger" build number 10 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins6940397683133892871.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_1037_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 07:39:25,814 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:39:25,816 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 07:39:25,816 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:39:25,818 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:39:25,818 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:39:25,819 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:39:25,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:39:25,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:39:25,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:39:25,821 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:39:25,821 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:39:25,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:39:26,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:39:26,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:39:26,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:39:26,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:39:26,093 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:39:26,094 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:39:26,094 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:39:26,094 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:39:26,095 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 07:39:26,096 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 07:39:26,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 276 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-21 07:39:26,110] [main] java.version = 21 [testng] 07:39:26,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:39:26,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:26,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-21_07-39-26.log] [testng] 07:39:26,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-03-21 07:39:26,182] [main] testng.directory = /data [testng] [2024-03-21 07:39:26,182] [main] testng.configDirectory = /config [testng] [2024-03-21 07:39:26,193] [main] testng.multiplier = 1.0 [testng] [2024-03-21 07:39:26,193] [main] testng.in-memory = false [testng] [2024-03-21 07:39:26,194] [main] testng.allow-missing = false [testng] [2024-03-21 07:39:26,194] [main] user.language = en [testng] [2024-03-21 07:39:26,194] [main] user.country = ${user.country} [testng] [2024-03-21 07:39:26,194] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-21 07:39:28,015] [main] ---------------------------------------- [testng] [2024-03-21 07:39:28,015] [main] Total files: 22 [testng] [2024-03-21 07:39:28,015] [main] Scan time: 1.821 s (82 ms/file) [testng] [2024-03-21 07:39:28,016] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-21 07:39:36,192] [pool-1-thread-1] Initializing /data/converted/clown.ipw: [testng] 07:39:36,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:39:36,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:36,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-21_07-39-36.log] [testng] 07:39:36,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c02fa44 - End of configuration. [testng] [2024-03-21 07:39:36,244] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips: [testng] 07:39:36,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:39:36,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:36,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-21_07-39-36.log] [testng] 07:39:36,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4745ac65 - End of configuration. [testng] [2024-03-21 07:39:36,301] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 07:39:36,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:39:36,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:36,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-21_07-39-36.log] [testng] 07:39:36,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f24f1c7 - End of configuration. [testng] [2024-03-21 07:39:36,378] [pool-1-thread-10] Initializing /data/converted/clown8c.ipw: [testng] 07:39:36,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:39:36,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:36,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-21_07-39-36.log] [testng] 07:39:36,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@825e653 - End of configuration. [testng] [2024-03-21 07:39:36,423] [pool-1-thread-9] Initializing /data/samples/FLDUAL.TIF: [testng] 07:39:36,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:39:36,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:36,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-21_07-39-36.log] [testng] 07:39:36,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1446d1e7 - End of configuration. [testng] [2024-03-21 07:39:36,559] [pool-1-thread-8] Initializing /data/converted/mitosis-test.tif: [testng] 07:39:36,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:39:36,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:36,561 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-21_07-39-36.log] [testng] 07:39:36,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d2d2150 - End of configuration. [testng] [2024-03-21 07:39:36,838] [pool-1-thread-7] Initializing /data/converted/clown.seq: [testng] 07:39:36,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:39:36,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:36,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-21_07-39-36.log] [testng] 07:39:36,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c47127 - End of configuration. [testng] [2024-03-21 07:39:36,893] [pool-1-thread-6] Initializing /data/converted/dub01.ipw: [testng] 07:39:36,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:39:36,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:36,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-21_07-39-36.log] [testng] 07:39:36,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@755533c1 - End of configuration. [testng] [2024-03-21 07:39:36,964] [pool-1-thread-5] Initializing /data/converted/dub01.seq: [testng] 07:39:36,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:39:36,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:36,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-21_07-39-36.log] [testng] 07:39:36,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19d4aa52 - End of configuration. [testng] [2024-03-21 07:39:37,023] [pool-1-thread-4] Initializing /data/converted/mitosis-test.seq: [testng] 07:39:37,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:39:37,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:37,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-21_07-39-37.log] [testng] 07:39:37,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53cc4861 - End of configuration. [testng] [2024-03-21 07:39:37,105] [pool-1-thread-3] Initializing /data/samples/PROBE.TIF: [testng] 07:39:37,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:39:37,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:37,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-21_07-39-37.log] [testng] 07:39:37,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c9cc5d7 - End of configuration. [testng] [2024-03-21 07:39:37,147] [pool-1-thread-2] Initializing /data/converted/clown8c.tif: [testng] 07:39:37,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:39:37,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:39:37,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-21_07-39-37.log] [testng] 07:39:37,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d887faa - End of configuration. [testng] [2024-03-21 07:39:39,982] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-03-21 07:39:40,413] [pool-1-thread-7] Initializing /data/xiuwen/head2.seq: [testng] [2024-03-21 07:39:40,542] [pool-1-thread-1] Initializing /data/converted/clown8c.seq: [testng] [2024-03-21 07:39:40,765] [pool-1-thread-4] Initializing /data/converted/clown.tif: [testng] [2024-03-21 07:39:41,065] [pool-1-thread-5] Initializing /data/samples/TISSUE.TIF: [testng] [2024-03-21 07:39:41,265] [pool-1-thread-6] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [2024-03-21 07:39:41,395] [pool-1-thread-3] Initializing /data/samples/HEART.SEQ: [testng] [2024-03-21 07:39:41,471] [pool-1-thread-11] Initializing /data/converted/mitosis-test.ipw: [testng] [2024-03-21 07:39:41,532] [pool-1-thread-2] Initializing /data/converted/dub01.pic: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 45 seconds Finished: SUCCESS