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Started by upstream project "BIOFORMATS-test-repo" build number 69 originally caused by: Started by upstream project "Trigger" build number 77 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins13667710092164176998.sh + '[' avi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_10391_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:13:56,493 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:13:56,495 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:13:56,495 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:13:56,497 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:13:56,497 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:13:56,497 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:13:56,497 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:13:56,497 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:13:56,498 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:13:56,498 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:13:56,499 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:13:56,499 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:13:56,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:13:56,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:13:56,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:13:56,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:13:56,899 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:13:56,900 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:13:56,900 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:13:56,901 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:13:56,901 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:13:56,902 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:13:56,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 405 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-20 02:13:56,919] [main] java.version = 1.8.0_342 [testng] 02:13:56,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:13:56,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:56,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-20_02-13-56.log] [testng] 02:13:56,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-20 02:13:56,997] [main] testng.directory = /data [testng] [2024-05-20 02:13:56,998] [main] testng.configDirectory = /config [testng] [2024-05-20 02:13:57,019] [main] testng.multiplier = 1.0 [testng] [2024-05-20 02:13:57,020] [main] testng.in-memory = false [testng] [2024-05-20 02:13:57,020] [main] testng.allow-missing = false [testng] [2024-05-20 02:13:57,020] [main] user.language = fr [testng] [2024-05-20 02:13:57,020] [main] user.country = FR [testng] [2024-05-20 02:13:57,021] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-20 02:13:58,278] [main] ---------------------------------------- [testng] [2024-05-20 02:13:58,278] [main] Total files: 40 [testng] [2024-05-20 02:13:58,278] [main] Scan time: 1.257 s (31 ms/file) [testng] [2024-05-20 02:13:58,278] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-20 02:18:29,189] [pool-1-thread-1] Initializing /data/simon/24_bit_problem.avi: [testng] 02:18:29,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:18:29,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:29,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-20_02-18-29.log] [testng] 02:18:29,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@152490bb - End of configuration. [testng] [2024-05-20 02:18:29,349] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] 02:18:29,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:18:29,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:29,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-20_02-18-29.log] [testng] 02:18:29,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45318e8e - End of configuration. [testng] [2024-05-20 02:18:29,471] [pool-1-thread-11] Initializing /data/prairie/cornea dc and macs.AVI: [testng] 02:18:29,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:18:29,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:29,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-20_02-18-29.log] [testng] 02:18:29,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a0926e6 - End of configuration. [testng] [2024-05-20 02:18:29,564] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] 02:18:29,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:18:29,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:29,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-20_02-18-29.log] [testng] 02:18:29,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d24183d - End of configuration. [testng] [2024-05-20 02:18:29,655] [pool-1-thread-9] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 02:18:29,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:18:29,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:29,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-20_02-18-29.log] [testng] 02:18:29,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2caa05b9 - End of configuration. [testng] [2024-05-20 02:18:29,705] [pool-1-thread-8] Initializing /data/kurt/40x_6um_2.avi: [testng] 02:18:29,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:18:29,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:29,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-20_02-18-29.log] [testng] 02:18:29,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63874c48 - End of configuration. [testng] [2024-05-20 02:18:29,958] [pool-1-thread-7] Initializing /data/william/worm.avi: [testng] 02:18:29,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:18:29,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:29,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-20_02-18-29.log] [testng] 02:18:29,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c7052db - End of configuration. [testng] [2024-05-20 02:18:29,992] [pool-1-thread-6] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 02:18:29,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:18:29,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:29,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-20_02-18-29.log] [testng] 02:18:29,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cc5b7e0 - End of configuration. [testng] [2024-05-20 02:18:30,103] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] 02:18:30,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:18:30,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:30,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-20_02-18-30.log] [testng] 02:18:30,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7512212f - End of configuration. [testng] [2024-05-20 02:18:30,146] [pool-1-thread-4] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 02:18:30,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:18:30,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:30,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-20_02-18-30.log] [testng] 02:18:30,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5176217b - End of configuration. [testng] [2024-05-20 02:18:30,225] [pool-1-thread-3] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] 02:18:30,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:18:30,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:30,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-20_02-18-30.log] [testng] 02:18:30,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3567643b - End of configuration. [testng] [2024-05-20 02:19:25,749] [pool-1-thread-2] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 02:19:25,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:19:25,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:25,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-20_02-19-25.log] [testng] 02:19:25,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8460cdf - End of configuration. [testng] [2024-05-20 02:19:28,159] [pool-1-thread-2] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-05-20 02:19:28,202] [pool-1-thread-1] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-05-20 02:19:29,144] [pool-1-thread-7] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-05-20 02:19:29,196] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-05-20 02:19:29,244] [pool-1-thread-9] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-05-20 02:19:29,289] [pool-1-thread-4] Initializing /data/kurt/40x_6um.avi: [testng] [2024-05-20 02:19:29,572] [pool-1-thread-6] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2024-05-20 02:19:29,984] [pool-1-thread-5] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-05-20 02:19:30,100] [pool-1-thread-12] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-05-20 02:19:30,140] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-05-20 02:19:30,481] [pool-1-thread-2] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-05-20 02:19:30,643] [pool-1-thread-5] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-05-20 02:19:30,803] [pool-1-thread-8] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2024-05-20 02:19:30,894] [pool-1-thread-9] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-05-20 02:19:31,207] [pool-1-thread-12] Initializing /data/chris/APZ04_009.avi: [testng] [2024-05-20 02:19:38,751] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2024-05-20 02:19:38,926] [pool-1-thread-11] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-05-20 02:19:39,016] [pool-1-thread-2] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2024-05-20 02:19:44,503] [pool-1-thread-10] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-05-20 02:19:44,604] [pool-1-thread-6] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-05-20 02:19:44,734] [pool-1-thread-7] Initializing /data/kurt/63x_6um.avi: [testng] [2024-05-20 02:19:45,284] [pool-1-thread-4] Initializing /data/ascb/TIRF.avi: [testng] [2024-05-20 02:19:45,840] [pool-1-thread-5] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-05-20 02:19:46,720] [pool-1-thread-11] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-05-20 02:19:47,553] [pool-1-thread-6] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-05-20 02:19:47,599] [pool-1-thread-1] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 4 seconds Finished: SUCCESS