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Started by upstream project "BIOFORMATS-test-repo" build number 70 originally caused by: Started by upstream project "Trigger" build number 78 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins4885710277511828104.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_10470_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:20:50,437 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:50,438 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:20:50,438 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:50,439 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:50,440 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:50,440 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:50,440 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:50,440 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:50,441 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:50,441 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:50,441 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:50,442 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:50,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:50,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:50,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:50,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:50,624 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:50,624 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:50,624 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:50,625 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:50,625 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:20:50,626 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:20:50,626 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-21 01:20:50,634] [main] java.version = 11.0.16 [testng] 01:20:50,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:50,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:50,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-21_01-20-50.log] [testng] 01:20:50,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-05-21 01:20:50,679] [main] testng.directory = /data [testng] [2024-05-21 01:20:50,680] [main] testng.configDirectory = /config [testng] [2024-05-21 01:20:50,689] [main] testng.multiplier = 1.0 [testng] [2024-05-21 01:20:50,690] [main] testng.in-memory = false [testng] [2024-05-21 01:20:50,690] [main] testng.allow-missing = false [testng] [2024-05-21 01:20:50,690] [main] user.language = en [testng] [2024-05-21 01:20:50,690] [main] user.country = ${user.country} [testng] [2024-05-21 01:20:50,690] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-21 01:20:51,134] [main] ---------------------------------------- [testng] [2024-05-21 01:20:51,134] [main] Total files: 36 [testng] [2024-05-21 01:20:51,135] [main] Scan time: 0.444 s (12 ms/file) [testng] [2024-05-21 01:20:51,135] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-21 01:20:52,231] [pool-1-thread-1] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] 01:20:52,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:20:52,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:52,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-21_01-20-52.log] [testng] 01:20:52,234 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bffd0a7 - End of configuration. [testng] [2024-05-21 01:20:52,284] [pool-1-thread-12] Initializing /data/generated/mri-stack8.pcx: [testng] 01:20:52,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:20:52,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:52,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-21_01-20-52.log] [testng] 01:20:52,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79c1c2f8 - End of configuration. [testng] [2024-05-21 01:20:52,292] [pool-1-thread-11] Initializing /data/generated/mri-stack0.pcx: [testng] 01:20:52,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:20:52,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:52,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-21_01-20-52.log] [testng] 01:20:52,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2efe4e30 - End of configuration. [testng] [2024-05-21 01:20:52,298] [pool-1-thread-10] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] 01:20:52,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:20:52,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:52,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-21_01-20-52.log] [testng] 01:20:52,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@753d03ae - End of configuration. [testng] [2024-05-21 01:20:52,314] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 01:20:52,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:20:52,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:52,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-21_01-20-52.log] [testng] 01:20:52,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24d2e027 - End of configuration. [testng] [2024-05-21 01:20:52,322] [pool-1-thread-8] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] 01:20:52,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:20:52,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:52,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-21_01-20-52.log] [testng] 01:20:52,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57465a73 - End of configuration. [testng] [2024-05-21 01:20:52,331] [pool-1-thread-7] Initializing /data/generated/mri-stack26.pcx: [testng] 01:20:52,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:20:52,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:52,332 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-21_01-20-52.log] [testng] 01:20:52,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@505b05e - End of configuration. [testng] [2024-05-21 01:20:52,338] [pool-1-thread-6] Initializing /data/generated/mri-stack7.pcx: [testng] 01:20:52,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:20:52,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:52,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-21_01-20-52.log] [testng] 01:20:52,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6603c86e - End of configuration. [testng] [2024-05-21 01:20:52,344] [pool-1-thread-5] Initializing /data/generated/mri-stack3.pcx: [testng] 01:20:52,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:20:52,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:52,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-21_01-20-52.log] [testng] 01:20:52,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c5d0f31 - End of configuration. [testng] [2024-05-21 01:20:52,361] [pool-1-thread-4] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] 01:20:52,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:20:52,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:52,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-21_01-20-52.log] [testng] 01:20:52,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3008f505 - End of configuration. [testng] [2024-05-21 01:20:52,371] [pool-1-thread-3] Initializing /data/generated/mri-stack21.pcx: [testng] 01:20:52,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:20:52,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:52,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-21_01-20-52.log] [testng] 01:20:52,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4128c441 - End of configuration. [testng] [2024-05-21 01:20:52,378] [pool-1-thread-2] Initializing /data/generated/mri-stack23.pcx: [testng] 01:20:52,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:20:52,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:52,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-21_01-20-52.log] [testng] 01:20:52,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40727802 - End of configuration. [testng] [2024-05-21 01:20:54,449] [pool-1-thread-6] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-05-21 01:20:54,455] [pool-1-thread-5] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-05-21 01:20:54,460] [pool-1-thread-2] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-05-21 01:20:54,465] [pool-1-thread-7] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-05-21 01:20:54,470] [pool-1-thread-9] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-05-21 01:20:54,474] [pool-1-thread-11] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-05-21 01:20:54,478] [pool-1-thread-12] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-05-21 01:20:54,482] [pool-1-thread-3] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-05-21 01:20:54,488] [pool-1-thread-10] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-05-21 01:20:54,491] [pool-1-thread-4] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-05-21 01:20:54,495] [pool-1-thread-1] Initializing /data/generated/mri-stack4.pcx: [testng] [2024-05-21 01:20:54,499] [pool-1-thread-8] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-05-21 01:20:54,722] [pool-1-thread-1] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-05-21 01:20:54,778] [pool-1-thread-11] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-05-21 01:20:54,781] [pool-1-thread-4] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-05-21 01:20:54,784] [pool-1-thread-8] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-05-21 01:20:54,787] [pool-1-thread-2] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-05-21 01:20:54,793] [pool-1-thread-10] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-05-21 01:20:54,812] [pool-1-thread-7] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-05-21 01:20:54,859] [pool-1-thread-9] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-05-21 01:20:54,866] [pool-1-thread-6] Initializing /data/generated/mri-stack17.pcx: [testng] [2024-05-21 01:20:54,870] [pool-1-thread-12] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-05-21 01:20:54,881] [pool-1-thread-3] Initializing /data/generated/mri-stack15.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS