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Started by upstream project "BIOFORMATS-test-repo" build number 70 originally caused by: Started by upstream project "Trigger" build number 78 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins943792003491935650.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_10625_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:44:17,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:44:17,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 02:44:17,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:44:17,726 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:44:17,727 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:44:17,728 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:44:17,728 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:44:17,728 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:44:17,729 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:44:17,730 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:44:17,730 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:44:17,730 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:44:17,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:44:17,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:44:17,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:44:17,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:44:17,931 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:44:17,931 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:44:17,931 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:44:17,932 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:44:17,932 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 02:44:17,933 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 02:44:17,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 204 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-21 02:44:17,942] [main] java.version = 11.0.16 [testng] 02:44:17,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:44:17,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:17,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-21_02-44-17.log] [testng] 02:44:17,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-05-21 02:44:17,992] [main] testng.directory = /data [testng] [2024-05-21 02:44:17,992] [main] testng.configDirectory = /config [testng] [2024-05-21 02:44:18,002] [main] testng.multiplier = 1.0 [testng] [2024-05-21 02:44:18,004] [main] testng.in-memory = false [testng] [2024-05-21 02:44:18,004] [main] testng.allow-missing = false [testng] [2024-05-21 02:44:18,004] [main] user.language = en [testng] [2024-05-21 02:44:18,004] [main] user.country = ${user.country} [testng] [2024-05-21 02:44:18,004] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-21 02:44:20,274] [main] ---------------------------------------- [testng] [2024-05-21 02:44:20,275] [main] Total files: 31 [testng] [2024-05-21 02:44:20,275] [main] Scan time: 2.27 s (73 ms/file) [testng] [2024-05-21 02:44:20,275] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-21 02:44:22,715] [pool-1-thread-1] Initializing /data/big-images/2kx2k.jpf: [testng] 02:44:22,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:44:22,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:22,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-21_02-44-22.log] [testng] 02:44:22,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1db62dfa - End of configuration. [testng] [2024-05-21 02:44:22,738] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jp2: [testng] 02:44:22,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:44:22,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:22,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-21_02-44-22.log] [testng] 02:44:22,740 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51a0682a - End of configuration. [testng] [2024-05-21 02:44:22,871] [pool-1-thread-11] Initializing /data/vikram/Captured 4.jp2: [testng] 02:44:22,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:44:22,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:22,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-21_02-44-22.log] [testng] 02:44:22,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cc16888 - End of configuration. [testng] [2024-05-21 02:44:22,916] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jbig: [testng] 02:44:22,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:44:22,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:22,917 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-21_02-44-22.log] [testng] 02:44:22,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c17dd6d - End of configuration. [testng] [2024-05-21 02:44:22,949] [pool-1-thread-9] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 02:44:22,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:44:22,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:22,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-21_02-44-22.log] [testng] 02:44:22,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4abfd4b4 - End of configuration. [testng] [2024-05-21 02:44:23,569] [pool-1-thread-8] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 02:44:23,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:44:23,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:23,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-21_02-44-23.log] [testng] 02:44:23,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57622af7 - End of configuration. [testng] [2024-05-21 02:44:23,618] [pool-1-thread-7] Initializing /data/david/cy5-tph.jp2: [testng] 02:44:23,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:44:23,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:23,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-21_02-44-23.log] [testng] 02:44:23,620 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5acc733c - End of configuration. [testng] [2024-05-21 02:44:23,644] [pool-1-thread-6] Initializing /data/david/000000_000001.jpx: [testng] 02:44:23,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:44:23,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:23,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-21_02-44-23.log] [testng] 02:44:23,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@171b9db0 - End of configuration. [testng] [2024-05-21 02:44:23,720] [pool-1-thread-5] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] 02:44:23,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:44:23,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:23,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-21_02-44-23.log] [testng] 02:44:23,722 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3453641b - End of configuration. [testng] [2024-05-21 02:44:23,993] [pool-1-thread-4] Initializing /data/venu/Multichannel 3a.jpg: [testng] 02:44:23,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:44:23,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:23,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-21_02-44-23.log] [testng] 02:44:23,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b3d7b6a - End of configuration. [testng] [2024-05-21 02:44:24,119] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] 02:44:24,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:44:24,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:24,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-21_02-44-24.log] [testng] 02:44:24,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c0e9ff4 - End of configuration. [testng] [2024-05-21 02:44:24,159] [pool-1-thread-2] Initializing /data/big-images/8kx8k.jpf: [testng] 02:44:24,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:44:24,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:24,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-21_02-44-24.log] [testng] 02:44:24,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18f8579 - End of configuration. [testng] [2024-05-21 02:44:25,725] [pool-1-thread-10] Initializing /data/venu/Multichannel 3.jp2: [testng] [2024-05-21 02:44:25,916] [pool-1-thread-12] Initializing /data/kraig/head.jp2: [testng] [2024-05-21 02:44:26,231] [pool-1-thread-4] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-05-21 02:44:26,356] [pool-1-thread-11] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2024-05-21 02:44:26,457] [pool-1-thread-8] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2024-05-21 02:44:27,620] [pool-1-thread-12] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-05-21 02:44:31,953] [pool-1-thread-6] Initializing /data/vikram/Captured 5.jp2: [testng] [2024-05-21 02:44:32,465] [pool-1-thread-11] Initializing /data/misc/clown-rgb.jpc: [testng] [2024-05-21 02:44:32,920] [pool-1-thread-8] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-05-21 02:44:33,129] [pool-1-thread-11] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-05-21 02:44:33,159] [pool-1-thread-6] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-05-21 02:44:34,705] [pool-1-thread-1] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-05-21 02:44:34,751] [pool-1-thread-11] Initializing /data/vikram/Captured 3.jp2: [testng] [2024-05-21 02:44:35,815] [pool-1-thread-11] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-05-21 02:44:36,794] [pool-1-thread-11] Initializing /data/frans/flower.jp2: [testng] [2024-05-21 02:44:38,100] [pool-1-thread-10] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-05-21 02:44:38,746] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-05-21 02:44:39,695] [pool-1-thread-4] Initializing /data/vikram/Captured 2.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 0 seconds Finished: SUCCESS