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Started by upstream project "BIOFORMATS-test-repo" build number 71 originally caused by: Started by upstream project "Trigger" build number 79 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins13089187286284234735.sh + '[' lim = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_10648_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:51:57,363 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:51:57,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 03:51:57,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:51:57,365 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:51:57,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:51:57,365 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:51:57,366 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:51:57,366 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:51:57,366 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:51:57,367 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:51:57,367 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:51:57,367 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:51:57,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:51:57,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:51:57,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:51:57,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:51:57,581 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:51:57,581 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:51:57,582 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:51:57,582 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:51:57,582 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 03:51:57,583 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 03:51:57,583 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 217 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-22 03:51:57,592] [main] java.version = 17.0.2 [testng] 03:51:57,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:51:57,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:57,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-22_03-51-57.log] [testng] 03:51:57,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-05-22 03:51:57,642] [main] testng.directory = /data [testng] [2024-05-22 03:51:57,642] [main] testng.configDirectory = /config [testng] [2024-05-22 03:51:57,651] [main] testng.multiplier = 1.0 [testng] [2024-05-22 03:51:57,652] [main] testng.in-memory = false [testng] [2024-05-22 03:51:57,653] [main] testng.allow-missing = false [testng] [2024-05-22 03:51:57,653] [main] user.language = en [testng] [2024-05-22 03:51:57,653] [main] user.country = ${user.country} [testng] [2024-05-22 03:51:57,653] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-22 03:51:58,076] [main] ---------------------------------------- [testng] [2024-05-22 03:51:58,076] [main] Total files: 21 [testng] [2024-05-22 03:51:58,077] [main] Scan time: 0.423 s (20 ms/file) [testng] [2024-05-22 03:51:58,077] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-22 03:51:59,333] [pool-1-thread-1] Initializing /data/venu/Kontrolle0004.lim: [testng] 03:51:59,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:51:59,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:59,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-22_03-51-59.log] [testng] 03:51:59,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ee24703 - End of configuration. [testng] [2024-05-22 03:51:59,407] [pool-1-thread-12] Initializing /data/venu/Kontrolle0005.lim: [testng] 03:51:59,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:51:59,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:59,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-22_03-51-59.log] [testng] 03:51:59,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76ed1806 - End of configuration. [testng] [2024-05-22 03:51:59,432] [pool-1-thread-11] Initializing /data/venu/Kontrolle0003.lim: [testng] 03:51:59,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:51:59,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:59,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-22_03-51-59.log] [testng] 03:51:59,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63bd9b57 - End of configuration. [testng] [2024-05-22 03:51:59,463] [pool-1-thread-10] Initializing /data/venu/Kontrolle0019.lim: [testng] 03:51:59,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:51:59,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:59,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-22_03-51-59.log] [testng] 03:51:59,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eef41a - End of configuration. [testng] [2024-05-22 03:51:59,489] [pool-1-thread-9] Initializing /data/venu/Kontrolle0012.lim: [testng] 03:51:59,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:51:59,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:59,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-22_03-51-59.log] [testng] 03:51:59,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6cff2c - End of configuration. [testng] [2024-05-22 03:51:59,510] [pool-1-thread-8] Initializing /data/venu/Kontrolle0010.lim: [testng] 03:51:59,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:51:59,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:59,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-22_03-51-59.log] [testng] 03:51:59,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fb52c3 - End of configuration. [testng] [2024-05-22 03:51:59,542] [pool-1-thread-7] Initializing /data/venu/Kontrolle0002.lim: [testng] 03:51:59,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:51:59,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:59,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-22_03-51-59.log] [testng] 03:51:59,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d7b7883 - End of configuration. [testng] [2024-05-22 03:51:59,563] [pool-1-thread-6] Initializing /data/venu/Kontrolle0021.lim: [testng] 03:51:59,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:51:59,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:59,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-22_03-51-59.log] [testng] 03:51:59,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a89e1c - End of configuration. [testng] [2024-05-22 03:51:59,584] [pool-1-thread-5] Initializing /data/venu/Kontrolle0001.lim: [testng] 03:51:59,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:51:59,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:59,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-22_03-51-59.log] [testng] 03:51:59,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bc10b8 - End of configuration. [testng] [2024-05-22 03:51:59,607] [pool-1-thread-4] Initializing /data/venu/Kontrolle0020.lim: [testng] 03:51:59,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:51:59,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:59,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-22_03-51-59.log] [testng] 03:51:59,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1070fb26 - End of configuration. [testng] [2024-05-22 03:51:59,624] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] 03:51:59,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:51:59,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:59,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-22_03-51-59.log] [testng] 03:51:59,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a19f1cf - End of configuration. [testng] [2024-05-22 03:51:59,639] [pool-1-thread-2] Initializing /data/venu/Kontrolle0018.lim: [testng] 03:51:59,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:51:59,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:59,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-22_03-51-59.log] [testng] 03:51:59,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d9006ce - End of configuration. [testng] [2024-05-22 03:52:01,945] [pool-1-thread-12] Initializing /data/venu/Kontrolle0007.lim: [testng] [2024-05-22 03:52:01,955] [pool-1-thread-9] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-05-22 03:52:01,969] [pool-1-thread-1] Initializing /data/venu/Kontrolle0008.lim: [testng] [2024-05-22 03:52:01,982] [pool-1-thread-8] Initializing /data/venu/Kontrolle0014.lim: [testng] [2024-05-22 03:52:01,996] [pool-1-thread-3] Initializing /data/venu/Kontrolle0009.lim: [testng] [2024-05-22 03:52:02,007] [pool-1-thread-2] Initializing /data/venu/Kontrolle0016.lim: [testng] [2024-05-22 03:52:02,018] [pool-1-thread-5] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-05-22 03:52:02,038] [pool-1-thread-10] Initializing /data/venu/Kontrolle0017.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS