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Started by upstream project "BIOFORMATS-test-repo" build number 71
originally caused by:
 Started by upstream project "Trigger" build number 79
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins16082409494292324372.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_10676_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 03:58:06,906 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 03:58:06,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 03:58:06,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:58:06,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:58:06,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:58:06,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:58:06,910 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:58:06,910 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:58:06,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:58:06,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:58:06,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:58:06,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:58:07,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:58:07,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:58:07,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:58:07,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:58:07,143 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:58:07,143 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:58:07,143 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:58:07,144 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:58:07,144 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 03:58:07,145 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 03:58:07,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 234 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-05-22 03:58:07,158] [main] java.version = 17.0.2
   [testng] 03:58:07,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:58:07,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:58:07,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-22_03-58-07.log]
   [testng] 03:58:07,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-05-22 03:58:07,229] [main] testng.directory = /data
   [testng] [2024-05-22 03:58:07,229] [main] testng.configDirectory = /config
   [testng] [2024-05-22 03:58:07,239] [main] testng.multiplier = 1.0
   [testng] [2024-05-22 03:58:07,240] [main] testng.in-memory = false
   [testng] [2024-05-22 03:58:07,240] [main] testng.allow-missing = false
   [testng] [2024-05-22 03:58:07,240] [main] user.language = en
   [testng] [2024-05-22 03:58:07,241] [main] user.country = ${user.country}
   [testng] [2024-05-22 03:58:07,241] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-05-22 03:58:07,718] [main] ----------------------------------------
   [testng] [2024-05-22 03:58:07,719] [main] Total files: 14
   [testng] [2024-05-22 03:58:07,719] [main] Scan time: 0.477 s (34 ms/file)
   [testng] [2024-05-22 03:58:07,719] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 13 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-05-22 03:58:14,384] [pool-1-thread-1] Initializing /data/samples/BigTIFFLong.tif: 
   [testng] 03:58:14,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:58:14,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:58:14,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-22_03-58-14.log]
   [testng] 03:58:14,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a499048 - End of configuration.
   [testng] [2024-05-22 03:58:14,454] [pool-1-thread-12] Initializing /data/colin/7S59P8I1_F00000012.btf: 
   [testng] 03:58:14,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 03:58:14,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:58:14,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-22_03-58-14.log]
   [testng] 03:58:14,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f09442e - End of configuration.
   [testng] [2024-05-22 03:58:16,353] [pool-1-thread-11] Initializing /data/samples/BigTIFFSubIFD4.tif: 
   [testng] 03:58:16,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 03:58:16,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:58:16,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-22_03-58-16.log]
   [testng] 03:58:16,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ded36c3 - End of configuration.
   [testng] [2024-05-22 03:58:16,379] [pool-1-thread-10] Initializing /data/samples/BigTIFFLong8Tiles.tif: 
   [testng] 03:58:16,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:58:16,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:58:16,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-22_03-58-16.log]
   [testng] 03:58:16,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aee526f - End of configuration.
   [testng] [2024-05-22 03:58:16,409] [pool-1-thread-9] Initializing /data/carlsen/Olympics8-raw.tif: 
   [testng] 03:58:16,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:58:16,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:58:16,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-22_03-58-16.log]
   [testng] 03:58:16,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67bfe4eb - End of configuration.
   [testng] [2024-05-22 03:58:16,447] [pool-1-thread-8] Initializing /data/samples/BigTIFFMotorola.tif: 
   [testng] 03:58:16,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:58:16,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:58:16,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-22_03-58-16.log]
   [testng] 03:58:16,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd1a19e - End of configuration.
   [testng] [2024-05-22 03:58:16,469] [pool-1-thread-7] Initializing /data/carlsen/Olympics8-lzw.tif: 
   [testng] 03:58:16,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:58:16,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:58:16,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-22_03-58-16.log]
   [testng] 03:58:16,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36f276ed - End of configuration.
   [testng] [2024-05-22 03:58:16,502] [pool-1-thread-6] Initializing /data/samples/BigTIFFSubIFD8.tif: 
   [testng] 03:58:16,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:58:16,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:58:16,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-22_03-58-16.log]
   [testng] 03:58:16,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b2cb6d - End of configuration.
   [testng] [2024-05-22 03:58:16,523] [pool-1-thread-5] Initializing /data/samples/BigTIFF.tif: 
   [testng] 03:58:16,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:58:16,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:58:16,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-22_03-58-16.log]
   [testng] 03:58:16,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14e0307b - End of configuration.
   [testng] [2024-05-22 03:58:16,552] [pool-1-thread-4] Initializing /data/samples/BigTIFFLong8.tif: 
   [testng] 03:58:16,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:58:16,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:58:16,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-22_03-58-16.log]
   [testng] 03:58:16,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f861faf - End of configuration.
   [testng] [2024-05-22 03:58:16,571] [pool-1-thread-3] Initializing /data/samples/Classic.tif: 
   [testng] 03:58:16,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:58:16,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:58:16,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-22_03-58-16.log]
   [testng] 03:58:16,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c6c56bc - End of configuration.
   [testng] [2024-05-22 03:58:16,596] [pool-1-thread-2] Initializing /data/carlsen/Olympics8.tif: 
   [testng] 03:58:16,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:58:16,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:58:16,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-22_03-58-16.log]
   [testng] 03:58:16,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17be8144 - End of configuration.
   [testng] [2024-05-22 03:58:18,239] [pool-1-thread-3] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 689, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 25 seconds
Finished: SUCCESS