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Started by upstream project "BIOFORMATS-test-repo" build number 71 originally caused by: Started by upstream project "Trigger" build number 79 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins270033087831694305.sh + '[' pict = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_10684_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:59:50,504 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:59:50,506 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 03:59:50,506 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:59:50,507 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:59:50,508 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:59:50,508 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:59:50,508 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:59:50,508 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:59:50,509 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:59:50,510 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:59:50,510 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:59:50,510 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:59:50,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:59:50,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:59:50,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:59:50,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:59:50,723 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:59:50,723 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:59:50,723 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:59:50,723 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:59:50,723 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 03:59:50,724 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 03:59:50,724 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 215 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-22 03:59:50,734] [main] java.version = 17.0.2 [testng] 03:59:50,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:59:50,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:50,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-22_03-59-50.log] [testng] 03:59:50,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-05-22 03:59:50,803] [main] testng.directory = /data [testng] [2024-05-22 03:59:50,804] [main] testng.configDirectory = /config [testng] [2024-05-22 03:59:50,819] [main] testng.multiplier = 1.0 [testng] [2024-05-22 03:59:50,820] [main] testng.in-memory = false [testng] [2024-05-22 03:59:50,821] [main] testng.allow-missing = false [testng] [2024-05-22 03:59:50,821] [main] user.language = en [testng] [2024-05-22 03:59:50,821] [main] user.country = ${user.country} [testng] [2024-05-22 03:59:50,821] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-22 03:59:51,210] [main] ---------------------------------------- [testng] [2024-05-22 03:59:51,211] [main] Total files: 25 [testng] [2024-05-22 03:59:51,211] [main] Scan time: 0.389 s (15 ms/file) [testng] [2024-05-22 03:59:51,211] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-22 03:59:52,693] [pool-1-thread-1] Initializing /data/wayne/PotatoMeristem.pict: [testng] 03:59:52,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:59:52,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:52,695 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-22_03-59-52.log] [testng] 03:59:52,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b40a94c - End of configuration. [testng] [2024-05-22 03:59:52,756] [pool-1-thread-12] Initializing /data/misc/planet.pict: [testng] 03:59:52,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:59:52,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:52,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-22_03-59-52.log] [testng] 03:59:52,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@370c073 - End of configuration. [testng] [2024-05-22 03:59:52,796] [pool-1-thread-11] Initializing /data/jqd/32bit.pict: [testng] 03:59:52,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:59:52,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:52,797 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-22_03-59-52.log] [testng] 03:59:52,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73fe3107 - End of configuration. [testng] [2024-05-22 03:59:52,844] [pool-1-thread-10] Initializing /data/brian/images/RED.PCT: [testng] 03:59:52,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:59:52,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:52,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-22_03-59-52.log] [testng] 03:59:52,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eaea136 - End of configuration. [testng] [2024-05-22 03:59:52,865] [pool-1-thread-9] Initializing /data/misc/planet.png: [testng] 03:59:52,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:59:52,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:52,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-22_03-59-52.log] [testng] 03:59:52,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b6f9ee8 - End of configuration. [testng] [2024-05-22 03:59:52,871] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict: [testng] 03:59:52,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:59:52,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:52,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-22_03-59-52.log] [testng] 03:59:52,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a3bbdd5 - End of configuration. [testng] [2024-05-22 03:59:52,886] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 03:59:52,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:59:52,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:52,887 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-22_03-59-52.log] [testng] 03:59:52,888 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ec4cef8 - End of configuration. [testng] [2024-05-22 03:59:52,920] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 03:59:52,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:59:52,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:52,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-22_03-59-52.log] [testng] 03:59:52,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6de033c5 - End of configuration. [testng] [2024-05-22 03:59:52,929] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 03:59:52,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:59:52,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:52,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-22_03-59-52.log] [testng] 03:59:52,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29ce1dcf - End of configuration. [testng] [2024-05-22 03:59:52,938] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 03:59:52,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:59:52,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:52,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-22_03-59-52.log] [testng] 03:59:52,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55ebbee6 - End of configuration. [testng] [2024-05-22 03:59:53,113] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B32.pct: [testng] 03:59:53,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:59:53,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:53,114 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-22_03-59-53.log] [testng] 03:59:53,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dfc6800 - End of configuration. [testng] [2024-05-22 03:59:53,129] [pool-1-thread-2] Initializing /data/misc/planet2.pict: [testng] 03:59:53,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:59:53,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:59:53,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-22_03-59-53.log] [testng] 03:59:53,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5331fd25 - End of configuration. [testng] [2024-05-22 03:59:54,216] [pool-1-thread-3] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-05-22 03:59:54,223] [pool-1-thread-8] Initializing /data/brian/images/GRN.PCT: [testng] [2024-05-22 03:59:54,237] [pool-1-thread-5] Initializing /data/brian/images/WHT.PCT: [testng] [2024-05-22 03:59:54,252] [pool-1-thread-6] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-05-22 03:59:54,447] [pool-1-thread-9] Initializing /data/brian/images/VENUS.pct: [testng] [2024-05-22 03:59:54,464] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-05-22 03:59:54,588] [pool-1-thread-12] Initializing /data/misc/swlogo.pict: [testng] [2024-05-22 03:59:54,766] [pool-1-thread-11] Initializing /data/brian/images/BLU.PCT: [testng] [2024-05-22 03:59:54,782] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-05-22 03:59:54,797] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-05-22 03:59:54,872] [pool-1-thread-6] Initializing /data/brian/images/BLK.PCT: [testng] [2024-05-22 03:59:54,996] [pool-1-thread-7] Initializing /data/brian/images/YEL.PCT: [testng] [2024-05-22 03:59:55,059] [pool-1-thread-12] Initializing /data/jqd/mire32.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS