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Started by upstream project "BIOFORMATS-test-repo" build number 71 originally caused by: Started by upstream project "Trigger" build number 79 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins17793095862499254588.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_10718_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:25:22,520 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:25:22,522 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 04:25:22,522 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:25:22,523 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:25:22,524 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:25:22,524 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:25:22,524 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:25:22,524 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:25:22,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:25:22,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:25:22,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:25:22,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:25:22,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:25:22,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:25:22,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:25:22,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:25:22,752 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:25:22,752 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:25:22,752 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:25:22,753 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:25:22,753 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 04:25:22,754 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 04:25:22,754 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 229 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-22 04:25:22,765] [main] java.version = 17.0.2 [testng] 04:25:22,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:25:22,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:22,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-22_04-25-22.log] [testng] 04:25:22,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-05-22 04:25:22,818] [main] testng.directory = /data [testng] [2024-05-22 04:25:22,819] [main] testng.configDirectory = /config [testng] [2024-05-22 04:25:22,829] [main] testng.multiplier = 1.0 [testng] [2024-05-22 04:25:22,830] [main] testng.in-memory = false [testng] [2024-05-22 04:25:22,830] [main] testng.allow-missing = false [testng] [2024-05-22 04:25:22,830] [main] user.language = en [testng] [2024-05-22 04:25:22,831] [main] user.country = ${user.country} [testng] [2024-05-22 04:25:22,831] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-22 04:32:48,032] [main] ---------------------------------------- [testng] [2024-05-22 04:32:48,032] [main] Total files: 7329 [testng] [2024-05-22 04:32:48,033] [main] Scan time: 445.201 s (60 ms/file) [testng] [2024-05-22 04:32:48,033] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-22 04:36:30,468] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 04:36:30,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:36:30,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:30,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-22_04-36-30.log] [testng] 04:36:30,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a8df2c9 - End of configuration. [testng] [2024-05-22 04:36:30,567] [pool-1-thread-12] Initializing /data/qa-16915/m-04-488.tif: [testng] 04:36:30,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:36:30,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:30,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-22_04-36-30.log] [testng] 04:36:30,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d4a06d0 - End of configuration. [testng] [2024-05-22 04:36:30,952] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] 04:36:30,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:36:30,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:30,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-22_04-36-30.log] [testng] 04:36:30,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f7b1d3 - End of configuration. [testng] [2024-05-22 04:36:31,022] [pool-1-thread-11] Used files list does not include base file [testng] [2024-05-22 04:36:31,024] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] 04:36:31,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:36:31,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:31,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-22_04-36-31.log] [testng] 04:36:31,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f3a36ee - End of configuration. [testng] [2024-05-22 04:36:31,084] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 04:36:31,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:36:31,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:31,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-22_04-36-31.log] [testng] 04:36:31,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@203fb538 - End of configuration. [testng] [2024-05-22 04:36:31,156] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] 04:36:31,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:36:31,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:31,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-22_04-36-31.log] [testng] 04:36:31,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bd833b7 - End of configuration. [testng] [2024-05-22 04:36:31,239] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] 04:36:31,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:36:31,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:31,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-22_04-36-31.log] [testng] 04:36:31,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30d4de60 - End of configuration. [testng] [2024-05-22 04:36:31,317] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-22 04:36:31,320] [pool-1-thread-6] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] 04:36:31,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:36:31,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:31,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-22_04-36-31.log] [testng] 04:36:31,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64eeb43 - End of configuration. [testng] [2024-05-22 04:36:31,399] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 04:36:31,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:36:31,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:31,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-22_04-36-31.log] [testng] 04:36:31,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@702dbf02 - End of configuration. [testng] [2024-05-22 04:36:31,462] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] 04:36:31,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:36:31,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:31,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-22_04-36-31.log] [testng] 04:36:31,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c4d0cc2 - End of configuration. [testng] [2024-05-22 04:36:31,503] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] 04:36:31,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:36:31,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:31,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-22_04-36-31.log] [testng] 04:36:31,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75d9c434 - End of configuration. [testng] [2024-05-22 04:36:32,322] [pool-1-thread-2] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] 04:36:32,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:36:32,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:32,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-22_04-36-32.log] [testng] 04:36:32,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5baea892 - End of configuration. [testng] [2024-05-22 04:36:34,353] [pool-1-thread-5] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-05-22 04:36:35,832] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-05-22 04:36:36,393] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-05-22 04:36:36,494] [pool-1-thread-10] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-05-22 04:36:36,550] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-05-22 04:36:36,607] [pool-1-thread-8] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-05-22 04:36:36,843] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-22 04:36:36,955] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-05-22 04:36:37,635] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-05-22 04:36:38,280] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-05-22 04:36:38,395] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-22 04:36:38,396] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-05-22 04:36:38,479] [pool-1-thread-1] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-05-22 04:36:38,565] [pool-1-thread-10] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-05-22 04:36:38,696] [pool-1-thread-11] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-05-22 04:36:39,673] [pool-1-thread-6] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-05-22 04:36:40,289] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-05-22 04:36:40,897] [pool-1-thread-9] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-05-22 04:36:41,300] [pool-1-thread-3] Initializing /data/ascb/mt aim.tif: [testng] [2024-05-22 04:36:41,781] [pool-1-thread-5] Initializing /data/qa-16887/m-01.tif: [testng] [2024-05-22 04:36:42,265] [pool-1-thread-10] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-05-22 04:36:42,503] [pool-1-thread-4] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-05-22 04:36:42,668] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-22 04:36:42,720] [pool-1-thread-1] Used files list does not include base file [testng] [2024-05-22 04:36:43,066] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-05-22 04:36:43,770] [pool-1-thread-3] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-05-22 04:36:44,740] [pool-1-thread-1] Initializing /data/josh/2101to800.stk: [testng] [2024-05-22 04:36:45,401] [pool-1-thread-8] Initializing /data/samples/zserEight.stk: [testng] [2024-05-22 04:36:45,850] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-05-22 04:36:46,700] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-05-22 04:36:47,146] [pool-1-thread-10] Initializing /data/samples/zserSixteen.stk: [testng] [2024-05-22 04:36:47,403] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-22 04:36:47,505] [pool-1-thread-7] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-05-22 04:36:47,755] [pool-1-thread-10] Initializing /data/ascb/golgi marker.tif: [testng] [2024-05-22 04:36:47,940] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-05-22 04:36:48,071] [pool-1-thread-9] Initializing /data/jae/RGB_s34.tif: [testng] [2024-05-22 04:36:48,234] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-22 04:36:48,316] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-05-22 04:36:49,300] [pool-1-thread-12] Initializing /data/josh/2101to400astk.stk: [testng] [2024-05-22 04:36:51,070] [pool-1-thread-4] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-05-22 04:36:51,257] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-05-22 04:36:51,477] [pool-1-thread-8] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-05-22 04:36:51,948] [pool-1-thread-5] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-05-22 04:36:53,019] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-05-22 04:36:53,068] [pool-1-thread-1] Used files list does not include base file [testng] [2024-05-22 04:36:53,167] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-05-22 04:36:53,559] [pool-1-thread-4] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-05-22 04:36:53,781] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-05-22 04:36:53,810] [pool-1-thread-6] Used files list does not include base file [testng] [2024-05-22 04:36:53,812] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-05-22 04:36:53,884] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-05-22 04:36:53,983] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-05-22 04:36:54,548] [pool-1-thread-6] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-05-22 04:36:54,898] [pool-1-thread-9] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-05-22 04:37:03,082] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-05-22 04:37:03,135] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-22 04:37:03,137] [pool-1-thread-4] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-05-22 04:37:03,650] [pool-1-thread-6] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-05-22 04:37:03,802] [pool-1-thread-11] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-05-22 04:37:04,596] [pool-1-thread-6] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-05-22 04:37:05,284] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-05-22 04:37:05,548] [pool-1-thread-1] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-05-22 04:37:05,630] [pool-1-thread-6] Initializing /data/qa-16915/m-01.tif: [testng] [2024-05-22 04:37:06,710] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-05-22 04:37:06,800] [pool-1-thread-2] Initializing /data/steve/Experiment2.stk: [testng] [2024-05-22 04:37:07,270] [pool-1-thread-1] Initializing /data/steve/Experiment2.tif: [testng] [2024-05-22 04:37:07,426] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-05-22 04:37:07,847] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-05-22 04:37:07,906] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-22 04:37:07,936] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full 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Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-05-22 04:37:15,242] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-05-22 04:37:15,317] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-05-22 04:37:15,372] [pool-1-thread-11] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-05-22 04:37:15,416] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-05-22 04:37:15,434] [pool-1-thread-1] Used files list does not include base file [testng] [2024-05-22 04:37:15,862] [pool-1-thread-1] Initializing /data/samples/zser24.stk: [testng] [2024-05-22 04:37:15,894] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-05-22 04:37:16,262] [pool-1-thread-11] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-05-22 04:37:16,409] [pool-1-thread-1] Initializing /data/samples/diatoms3d.stk: [testng] [2024-05-22 04:37:16,447] [pool-1-thread-10] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-05-22 04:37:16,572] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-05-22 04:37:16,981] [pool-1-thread-5] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-05-22 04:37:17,038] [pool-1-thread-1] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-05-22 04:37:17,126] [pool-1-thread-7] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-05-22 04:37:18,683] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-05-22 04:37:18,745] [pool-1-thread-11] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-05-22 04:37:18,812] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-05-22 04:37:18,843] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-05-22 04:37:18,915] [pool-1-thread-10] Used files list does not include base file [testng] [2024-05-22 04:37:18,916] [pool-1-thread-12] Initializing /data/josh/2101to600f.stk: [testng] [2024-05-22 04:37:21,682] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-22 04:37:21,752] [pool-1-thread-1] Initializing /data/samples/10xcalib.tif: [testng] [2024-05-22 04:37:22,363] [pool-1-thread-1] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-05-22 04:37:22,716] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-05-22 04:37:22,913] [pool-1-thread-6] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-05-22 04:37:23,227] [pool-1-thread-3] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-05-22 04:37:23,833] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-05-22 04:37:23,923] [pool-1-thread-3] Initializing /data/alex/Selected FITC.stk: [testng] [2024-05-22 04:37:24,075] [pool-1-thread-11] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-05-22 04:37:24,176] [pool-1-thread-5] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-05-22 04:37:24,272] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-22 04:37:25,039] [pool-1-thread-4] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-05-22 04:37:25,331] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-05-22 04:37:25,730] [pool-1-thread-10] Initializing /data/samples/zseries.stk: [testng] [2024-05-22 04:37:25,842] [pool-1-thread-11] Initializing 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/data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-05-22 04:37:35,885] [pool-1-thread-8] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-05-22 04:37:36,101] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-05-22 04:37:36,196] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-22 04:37:36,513] [pool-1-thread-11] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-05-22 04:37:36,841] [pool-1-thread-4] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-05-22 04:37:37,549] [pool-1-thread-11] Initializing /data/samples/10xcalib.stk: [testng] [2024-05-22 04:37:37,807] [pool-1-thread-5] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-05-22 04:37:38,176] [pool-1-thread-3] Initializing 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Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-05-22 04:37:41,384] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-05-22 04:37:41,768] [pool-1-thread-1] Initializing /data/dave/Z Series.stk: [testng] [2024-05-22 04:37:42,257] [pool-1-thread-4] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-05-22 04:37:42,452] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-05-22 04:37:42,648] [pool-1-thread-3] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-05-22 04:37:43,169] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-22 04:37:43,420] [pool-1-thread-8] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-05-22 04:37:43,589] [pool-1-thread-1] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-05-22 04:37:43,836] [pool-1-thread-4] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-05-22 04:37:44,919] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-05-22 04:37:45,002] [pool-1-thread-8] Used files list does not include base file [testng] [2024-05-22 04:37:45,120] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-05-22 04:37:45,206] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-05-22 04:37:45,255] [pool-1-thread-11] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-05-22 04:37:46,818] [pool-1-thread-3] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-05-22 04:37:47,059] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-05-22 04:37:47,771] [pool-1-thread-1] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-05-22 04:37:47,991] [pool-1-thread-12] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-05-22 04:37:48,493] [pool-1-thread-8] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-05-22 04:37:48,607] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-05-22 04:37:48,720] [pool-1-thread-12] Initializing /data/josh/2101to600b.stk: [testng] [2024-05-22 04:37:49,892] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-05-22 04:37:50,439] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-05-22 04:37:50,705] [pool-1-thread-6] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-05-22 04:37:50,996] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-05-22 04:37:51,542] [pool-1-thread-11] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-05-22 04:37:51,646] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-05-22 04:37:52,126] [pool-1-thread-1] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-05-22 04:37:52,479] [pool-1-thread-5] Initializing /data/grant/X.STK: [testng] [2024-05-22 04:37:52,631] [pool-1-thread-11] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-05-22 04:37:52,724] [pool-1-thread-4] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-05-22 04:37:53,029] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-05-22 04:37:53,173] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-05-22 04:37:53,228] [pool-1-thread-8] Used files list does not include base file [testng] [2024-05-22 04:37:53,332] [pool-1-thread-4] Initializing /data/thomas/test.tif: [testng] [2024-05-22 04:37:53,545] [pool-1-thread-3] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-05-22 04:37:54,087] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-05-22 04:37:54,179] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-22 04:37:54,480] [pool-1-thread-3] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-05-22 04:37:54,674] [pool-1-thread-11] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-05-22 04:37:55,249] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-22 04:37:55,346] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-05-22 04:37:55,413] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-05-22 04:37:55,532] [pool-1-thread-7] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-05-22 04:37:56,835] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-22 04:37:56,858] [pool-1-thread-4] Used files list does not include base file [testng] [2024-05-22 04:37:56,947] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-22 04:37:57,094] [pool-1-thread-5] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-05-22 04:37:57,446] [pool-1-thread-4] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-05-22 04:37:57,529] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-05-22 04:37:57,658] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-05-22 04:37:57,739] [pool-1-thread-1] Used files list does not include base file [testng] [2024-05-22 04:37:57,952] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-05-22 04:37:58,334] [pool-1-thread-11] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-05-22 04:37:58,610] [pool-1-thread-8] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-05-22 04:38:00,031] [pool-1-thread-6] Initializing /data/cumol-test-series/23.001: [testng] [2024-05-22 04:38:00,231] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-05-22 04:38:00,288] [pool-1-thread-9] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-05-22 04:38:00,749] [pool-1-thread-2] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-05-22 04:38:01,666] [pool-1-thread-4] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-05-22 04:38:01,739] [pool-1-thread-3] Initializing /data/jerome/deconv.STK: [testng] [2024-05-22 04:38:02,125] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-05-22 04:38:04,170] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-05-22 04:38:04,321] [pool-1-thread-3] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-05-22 04:38:06,725] [pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 22 minutes 7 seconds Finished: SUCCESS