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Started by upstream project "BIOFORMATS-test-repo" build number 72 originally caused by: Started by upstream project "Trigger" build number 80 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins14254817692205154750.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_10809_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:20:21,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:21,809 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:20:21,809 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:21,810 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:21,810 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:21,811 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:21,811 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:21,811 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:21,812 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:21,812 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:21,813 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:21,813 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:22,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:22,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:22,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:22,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:22,066 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:22,066 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:22,067 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:22,067 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:22,067 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:20:22,068 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:20:22,068 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 256 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-23 01:20:22,079] [main] java.version = 21 [testng] 01:20:22,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:22,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:22,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-23_01-20-22.log] [testng] 01:20:22,144 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-05-23 01:20:22,147] [main] testng.directory = /data [testng] [2024-05-23 01:20:22,147] [main] testng.configDirectory = /config [testng] [2024-05-23 01:20:22,159] [main] testng.multiplier = 1.0 [testng] [2024-05-23 01:20:22,160] [main] testng.in-memory = false [testng] [2024-05-23 01:20:22,160] [main] testng.allow-missing = false [testng] [2024-05-23 01:20:22,160] [main] user.language = en [testng] [2024-05-23 01:20:22,161] [main] user.country = ${user.country} [testng] [2024-05-23 01:20:22,161] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-23 01:20:30,663] [main] ---------------------------------------- [testng] [2024-05-23 01:20:30,664] [main] Total files: 4424 [testng] [2024-05-23 01:20:30,664] [main] Scan time: 8.502 s (1 ms/file) [testng] [2024-05-23 01:20:30,665] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 721 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-23 01:22:22,644] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] 01:22:22,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:22,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-23_01-22-22.log] [testng] 01:22:22,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@436842af - End of configuration. [testng] [2024-05-23 01:22:22,682] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z023.tif: [testng] 01:22:22,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:22,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-23_01-22-22.log] [testng] 01:22:22,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2106ca5f - End of configuration. [testng] [2024-05-23 01:22:22,711] [pool-1-thread-11] Initializing /data/public/libtiff/quad-jpeg.tif: [testng] 01:22:22,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:22,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-23_01-22-22.log] [testng] 01:22:22,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a8d60c2 - End of configuration. [testng] [2024-05-23 01:22:22,734] [pool-1-thread-10] Initializing /data/ascb/CYT-55_HowellGolgiRibbonOutlined_4800.tif: [testng] 01:22:22,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:22,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-23_01-22-22.log] [testng] 01:22:22,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fbc1ecc - End of configuration. [testng] [2024-05-23 01:22:22,793] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] 01:22:22,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:22,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-23_01-22-22.log] [testng] 01:22:22,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@103a2b4d - End of configuration. [testng] [2024-05-23 01:22:22,814] [pool-1-thread-8] Initializing /data/misc/mri.eps: [testng] 01:22:22,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:22,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-23_01-22-22.log] [testng] 01:22:22,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@664763a0 - End of configuration. [testng] [2024-05-23 01:22:22,828] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z035.tif: [testng] 01:22:22,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:22,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-23_01-22-22.log] [testng] 01:22:22,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d2b878e - End of configuration. [testng] [2024-05-23 01:22:22,854] [pool-1-thread-6] Initializing /data/josiah/cell-Z27.C1.tiff: [testng] 01:22:22,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:22,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-23_01-22-22.log] [testng] 01:22:22,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@293377ae - End of configuration. [testng] [2024-05-23 01:22:22,885] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z023.tif: [testng] 01:22:22,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:22,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-23_01-22-22.log] [testng] 01:22:22,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8b2490 - End of configuration. [testng] [2024-05-23 01:22:22,914] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] 01:22:22,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:22,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,915 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-23_01-22-22.log] [testng] 01:22:22,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23e52df - End of configuration. [testng] [2024-05-23 01:22:22,939] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z036.tif: [testng] 01:22:22,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:22,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-23_01-22-22.log] [testng] 01:22:22,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58ce6741 - End of configuration. [testng] [2024-05-23 01:22:22,968] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z059.tif: [testng] 01:22:22,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:22,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:22,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-23_01-22-22.log] [testng] 01:22:22,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58ce766d - End of configuration. [testng] [2024-05-23 01:22:24,839] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0222.TIF: [testng] [2024-05-23 01:22:24,895] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z062.tif: [testng] [2024-05-23 01:22:24,917] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z015.tif: [testng] [2024-05-23 01:22:24,939] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z031.tif: [testng] [2024-05-23 01:22:24,958] [pool-1-thread-2] Initializing /data/josh/NESb_C2_TP7.tiff: [testng] [2024-05-23 01:22:25,009] [pool-1-thread-9] Initializing /data/samples/melissa/strike-uncompressed.tiff: [testng] [2024-05-23 01:22:25,038] [pool-1-thread-8] Initializing /data/josiah/cell-Z16.C0.tiff: [testng] [2024-05-23 01:22:25,061] [pool-1-thread-4] Initializing /data/ascb/FND-28a_PaladeHepatocyteLabeled_4800.tif: [testng] [2024-05-23 01:22:26,071] [pool-1-thread-11] Initializing /data/imagesc-82872/SG11410002_253174651388_S001.tif: [testng] [2024-05-23 01:22:26,157] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0253.TIF: [testng] [2024-05-23 01:22:26,235] [pool-1-thread-12] Initializing /data/curtis/map/jumps-over: [testng] [2024-05-23 01:22:26,752] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-05-23 01:22:26,794] [pool-1-thread-12] Initializing /data/damian/06m.tiff: [testng] [2024-05-23 01:22:26,962] [pool-1-thread-6] Initializing /data/lee/r03c03f01p01rc2-ch1sk1fk1fl1.tiff: [testng] [2024-05-23 01:22:27,157] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0211.TIF: [testng] [2024-05-23 01:22:27,219] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z026.tif: [testng] [2024-05-23 01:22:27,273] [pool-1-thread-8] Initializing /data/josiah/cell-Z19.C0.tiff: [testng] [2024-05-23 01:22:27,451] [pool-1-thread-1] Initializing /data/damian/21m.tiff: [testng] [2024-05-23 01:22:27,504] [pool-1-thread-3] Initializing /data/samples/cielab/Ski_TC8-03_sRGB.tif: [testng] [2024-05-23 01:22:27,571] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z031.tif: [testng] [2024-05-23 01:22:27,593] [pool-1-thread-7] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-05-23 01:22:27,616] [pool-1-thread-12] Initializing /data/stephane/F3L1A_DNA 2.tif: [testng] [2024-05-23 01:22:28,131] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0202.TIF: [testng] [2024-05-23 01:22:28,213] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0254.TIF: [testng] [2024-05-23 01:22:28,280] [pool-1-thread-2] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-05-23 01:22:28,425] [pool-1-thread-1] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-05-23 01:22:28,476] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-05-23 01:22:28,831] [pool-1-thread-5] Initializing /data/damian/33m.tiff: [testng] [2024-05-23 01:22:29,516] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z052.tif: [testng] [2024-05-23 01:22:29,567] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z059.tif: [testng] [2024-05-23 01:22:29,601] [pool-1-thread-9] Initializing /data/ascb/CYT-35_FriendOsmiumEpididymis_4800.tif: [testng] [2024-05-23 01:22:29,921] [pool-1-thread-8] Initializing /data/brian/CurrentSystems.tiff: [testng] [2024-05-23 01:22:30,067] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z014.tif: [testng] [2024-05-23 01:22:30,133] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [2024-05-23 01:22:30,163] [pool-1-thread-1] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs007.TIF: [testng] [2024-05-23 01:22:30,221] [pool-1-thread-10] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-05-23 01:22:30,278] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z054.tif: [testng] [2024-05-23 01:22:30,551] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z030.tif: [testng] 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01:24:12,073] [pool-1-thread-12] Initializing /data/qa-5004/ID4118_21_uncuff_10x_HE.tif: [testng] [2024-05-23 01:24:12,480] [pool-1-thread-9] Initializing /data/carolyn/tumor_3.tif: [testng] [2024-05-23 01:24:13,368] [pool-1-thread-1] Initializing /data/ascb/FND-12_PorterFranziniSarcoplasmic_4800.tif: [testng] [2024-05-23 01:24:13,679] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z015.tif: [testng] [2024-05-23 01:24:14,025] [pool-1-thread-11] Initializing /data/julien/Genevievevanille.TIF: [testng] [2024-05-23 01:24:14,193] [pool-1-thread-9] Initializing /data/bgriffen/Image_XY01_00557_Z001_CH1.tif: [testng] [2024-05-23 01:24:14,726] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0210.TIF: [testng] [2024-05-23 01:24:14,963] [pool-1-thread-11] Initializing /data/matt/CR20070824-002_6202483715-06 003_0_P23_0Green.tif: [testng] [2024-05-23 01:24:15,633] [pool-1-thread-2] Initializing /data/ascb/CYT-50_FriendSecretoryPairA_4800.tif: [testng] [2024-05-23 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Initializing /data/brian/retina/retina_C0_Z063.tif: [testng] [2024-05-23 01:24:18,557] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z057.tif: [testng] [2024-05-23 01:24:18,593] [pool-1-thread-9] Initializing /data/public/condensation/A5.pattern1.tif: [testng] [2024-05-23 01:24:18,767] [pool-1-thread-7] Initializing /data/public/condensation/B12.pattern5.tif: [testng] [2024-05-23 01:24:18,948] [pool-1-thread-3] Initializing /data/josh/stack.tif: [testng] [2024-05-23 01:24:19,013] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z004.tif: [testng] [2024-05-23 01:24:19,049] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0251.TIF: [testng] [2024-05-23 01:24:19,372] [pool-1-thread-7] Initializing /data/curtis/map/the-quick: [testng] [2024-05-23 01:24:19,405] [pool-1-thread-9] Initializing /data/kevino/_BF_00001.tif: [testng] [2024-05-23 01:24:19,465] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z010.tif: [testng] [2024-05-23 01:24:19,661] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs002.TIF: [testng] [2024-05-23 01:24:19,825] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-05-23 01:24:19,892] [pool-1-thread-11] Initializing /data/lzw/DendriteForks.tif: [testng] [2024-05-23 01:24:20,034] [pool-1-thread-3] Initializing /data/qa-7589/CalGrid2.tif: [testng] [2024-05-23 01:24:20,140] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z037.tif: [testng] [2024-05-23 01:24:20,244] [pool-1-thread-8] Initializing /data/tamjid/Image_843.tif: [testng] [2024-05-23 01:24:20,615] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z016.tif: [testng] [2024-05-23 01:24:20,651] [pool-1-thread-9] Initializing /data/curtis/images24.tiff: [testng] [2024-05-23 01:24:20,723] [pool-1-thread-3] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-05-23 01:24:20,943] [pool-1-thread-7] Initializing 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01:24:22,556] [pool-1-thread-2] Initializing /data/jeff/erdas_spnad83.tif: [testng] [2024-05-23 01:24:22,592] [pool-1-thread-12] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-05-23 01:24:22,819] [pool-1-thread-3] Initializing /data/curtis/test2.tiff: [testng] [2024-05-23 01:24:23,054] [pool-1-thread-1] Initializing /data/wayne/Rockies-rgb.tif: [testng] [2024-05-23 01:24:23,086] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] [2024-05-23 01:24:23,152] [pool-1-thread-12] Initializing /data/josiah/cell-Z15.C0.tiff: [testng] [2024-05-23 01:24:23,221] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z000.tif: [testng] [2024-05-23 01:24:23,264] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-05-23 01:24:23,518] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z027.tif: [testng] [2024-05-23 01:24:23,684] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z011.tif: [testng] [2024-05-23 01:24:23,719] [pool-1-thread-11] Initializing /data/ascb/bad/CYT-76_PasolliMouse1_4800.tif: [testng] [2024-05-23 01:24:23,989] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z000.tif: [testng] [2024-05-23 01:24:24,026] [pool-1-thread-12] Initializing /data/josiah/cell-Z37.C1.tiff: [testng] [2024-05-23 01:24:24,053] [pool-1-thread-3] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-05-23 01:24:24,112] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x48.tiff: [testng] [2024-05-23 01:24:24,381] [pool-1-thread-1] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2024-05-23 01:24:24,420] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z028.tif: [testng] [2024-05-23 01:24:24,481] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z019.tif: [testng] [2024-05-23 01:24:24,545] [pool-1-thread-3] Initializing /data/martin/head.tif: [testng] [2024-05-23 01:24:24,745] [pool-1-thread-12] Initializing /data/ascb/CYT-2_BaintonBoylesPhagocytosisYeastB_4800.tif: [testng] [2024-05-23 01:24:24,832] [pool-1-thread-2] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-05-23 01:24:25,135] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-64.tiff: [testng] [2024-05-23 01:24:25,340] [pool-1-thread-3] Initializing /data/josiah/cell-Z25.C1.tiff: [testng] [2024-05-23 01:24:25,520] [pool-1-thread-2] Initializing /data/josiah/cell-Z3.C1.tiff: [testng] [2024-05-23 01:24:25,551] [pool-1-thread-10] Initializing /data/josiah/cell-Z32.C0.tiff: [testng] [2024-05-23 01:24:25,578] [pool-1-thread-1] Initializing /data/jerome/e346_plt1(m)_F1-6.tif: [testng] [2024-05-23 01:24:25,686] [pool-1-thread-9] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-05-23 01:24:25,858] [pool-1-thread-3] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-05-23 01:24:27,130] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0233.TIF: [testng] [2024-05-23 01:24:27,289] [pool-1-thread-2] Initializing /data/josiah/cell-Z7.C0.tiff: [testng] [2024-05-23 01:24:27,714] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-05-23 01:24:27,951] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z053.tif: [testng] [2024-05-23 01:24:28,028] [pool-1-thread-1] Initializing /data/wayne/m51-16bit.tif: [testng] [2024-05-23 01:24:28,257] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C1_Z012.tif: [testng] [2024-05-23 01:24:28,304] [pool-1-thread-10] Initializing /data/public/condensation/A5.pattern2.tif: [testng] [2024-05-23 01:24:28,374] [pool-1-thread-7] Initializing /data/jay/Cleared%2fStack.tif: [testng] [2024-05-23 01:24:28,570] [pool-1-thread-2] Initializing /data/bene/3d-example-stack.tif: [testng] [2024-05-23 01:24:28,816] [pool-1-thread-6] Initializing /data/damian/12m.tiff: [testng] [2024-05-23 01:24:29,006] [pool-1-thread-10] Initializing /data/public/condensation/A6.pattern2.tif: [testng] [2024-05-23 01:24:29,079] [pool-1-thread-7] Initializing /data/paulh/quickpollen4_w1_t1.tif: [testng] [2024-05-23 01:24:29,196] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z023.tif: [testng] [2024-05-23 01:24:29,343] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0256.TIF: [testng] [2024-05-23 01:24:29,407] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z005.tif: [testng] [2024-05-23 01:24:29,610] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z035.tif: [testng] [2024-05-23 01:24:29,789] [pool-1-thread-7] Initializing /data/josiah/cell-Z9.C1.tiff: [testng] [2024-05-23 01:24:29,833] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z058.tif: [testng] [2024-05-23 01:24:29,852] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-01.tiff: [testng] [2024-05-23 01:24:30,134] [pool-1-thread-1] Initializing /data/public/libtiff/caspian.tif: [testng] [2024-05-23 01:24:30,253] [pool-1-thread-9] Initializing /data/josiah/cell-Z15.C1.tiff: [testng] [2024-05-23 01:24:30,297] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z003.tif: [testng] [2024-05-23 01:24:30,363] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z058.tif: [testng] [2024-05-23 01:24:30,420] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-64.tiff: [testng] [2024-05-23 01:24:30,492] [pool-1-thread-7] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-05-23 01:24:31,048] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0213.TIF: [testng] [2024-05-23 01:24:31,347] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0206.TIF: [testng] [2024-05-23 01:24:31,419] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C1_Z005.tif: [testng] [2024-05-23 01:24:31,441] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] [2024-05-23 01:24:31,473] [pool-1-thread-1] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-05-23 01:24:31,766] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-05-23 01:24:32,142] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] [2024-05-23 01:24:32,206] [pool-1-thread-12] Initializing /data/josiah/cell-Z29.C0.tiff: [testng] [2024-05-23 01:24:32,234] [pool-1-thread-10] Initializing /data/big-images/4kx4k.tif: [testng] [2024-05-23 01:24:32,280] [pool-1-thread-6] Initializing /data/josiah/cell-Z11.C0.tiff: [testng] [2024-05-23 01:24:32,432] [pool-1-thread-1] Initializing /data/ascb/bad/FND-21_FawcettPhillipsTransverse_4800.tif: [testng] [2024-05-23 01:24:32,534] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z014.tif: [testng] [2024-05-23 01:24:32,789] [pool-1-thread-2] Initializing /data/carolyn/tumor_4.tif: [testng] [2024-05-23 01:24:32,938] [pool-1-thread-12] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-05-23 01:24:33,006] [pool-1-thread-6] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] [2024-05-23 01:24:33,059] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z002.tif: [testng] [2024-05-23 01:24:33,121] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0224.TIF: [testng] [2024-05-23 01:24:33,477] [pool-1-thread-6] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-05-23 01:24:33,712] [pool-1-thread-8] Initializing /data/qa-4968/twocars2.tif: [testng] [2024-05-23 01:24:33,955] [pool-1-thread-2] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-05-23 01:24:34,191] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z012.tif: [testng] [2024-05-23 01:24:34,474] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z039.tif: [testng] [2024-05-23 01:24:34,550] [pool-1-thread-2] Initializing /data/josiah/cell-Z9.C0.tiff: [testng] [2024-05-23 01:24:34,588] [pool-1-thread-9] Initializing /data/chris-wood/ticket-10050/cjw_stowers.tif: [testng] [2024-05-23 01:24:34,890] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z004.tif: [testng] [2024-05-23 01:24:34,952] [pool-1-thread-12] Initializing /data/misc/mri-old.mov: [testng] [2024-05-23 01:24:35,511] [pool-1-thread-2] Initializing /data/ascb/14346-myc-p125A.tif: [testng] [2024-05-23 01:24:35,756] [pool-1-thread-6] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-05-23 01:24:35,835] [pool-1-thread-12] Initializing /data/josiah/cell-Z29.C1.tiff: [testng] [2024-05-23 01:24:36,483] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z017.tif: [testng] [2024-05-23 01:24:36,528] [pool-1-thread-2] Initializing /data/josiah/cell-Z22.C0.tiff: [testng] [2024-05-23 01:24:36,577] [pool-1-thread-12] Initializing /data/julien/MarjorieCoisy1.TIF: [testng] [2024-05-23 01:24:36,698] [pool-1-thread-8] Initializing /data/misc/wtembryo.tiff: [testng] [2024-05-23 01:24:37,008] [pool-1-thread-6] Initializing /data/wayne/northern-8bit.tif: [testng] [2024-05-23 01:24:37,154] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z003.tif: [testng] [2024-05-23 01:24:37,344] [pool-1-thread-8] Initializing /data/jcb/SuppFig5D.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38213, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 42 seconds Finished: SUCCESS